Citrus Sinensis ID: 042413

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFILHYGSMPLENYFLGEAFLTVWRQIYTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALHP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccccEEEEEcccHHHHHcccccccEEcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHHHHcccEEEEccccccccccEEEEEEEccccccccccccccccccEEEEccccccccccHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccccEEEEEEccHHHHHHHcccccccEEEcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHEEEEEccccccEEcHHHHHHHHHHHcHccccHHHHHHHHHHHHHHHccEEEEcccccccEEEEEHHHHHHHHHHHHHccccEEEEEcccccccccEEEEEEEEccccccHHHccccccEEEEEEEccccccccHHHHHHHHHcccEEEEEEccccccHHcccHHHHHHHHHEEcccccccHHccHHHHHHHcccEEEccccccHHccHHHHHHHHHHEEEEccccccccccccccccHHHHHHcccc
Coil and Loop (DISEMBL)
MTFQQWDNLeqvlpdnqngsrvlITVTDPELLLSLEmengekirpdsvlnggpmirlkHESWQFFILHygsmplenyflgEAFLTVWRQIYTVMELPFHLKVCCIYlcvfppsieisTRQLYQLWVAegfipyngeeTAEHYLKELIHRGFIKVSKRRARDtikscyvpsfIYTSLALVAEKtgfvwmpdmeeeslANVKRCFILKDLIDFFSSLKHSDMYLQSFLNhssknnhlnskdYENFFKRFKYLRVLNLGSavldqypsgleNLYLLKYLklnipslkCLHSLLCTLLNletlempssyidqsphDIWMMQKLMHLYFYcispctsknysssLKNLIFISALHP
Flexible Loop (DISEMBL)
MTFQQWDNLEqvlpdnqngsrvLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFILHYGSMPLENYFLGEAFLTVWRQIYTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALHP
Low Complexity Region (SEG)
MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFILHYGSMPLENYFLGEAFLTVWRQIYTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLIDFFSSLKHSDMYLQsflnhssknnhlnskDYENFFKRFKYLRVLNLGSAVLDQYPSGLEnlyllkylklnIPslkclhsllctllnletleMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALHP
Disordered region (IsUnstruct)
********************RVLITVTDPELLLSLEM*********SVLNGGPMIRLKHESWQFFILHYGSMPLENYFLGEAFLTVWRQIYTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFIS****
Disordered Region (DISOPRED)
MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFILHYGSMPLENYFLGEAFLTVWRQIYTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALH*
Disordered Region (DISEMBL)
MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFILHYGSMPLENYFLGEAFLTVWRQIYTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALHP
Disordered Region (DISPRO)
*TFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFILHYGSMPLENYFLGEAFLTVWRQIYTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALH*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFILHYGSMPLENYFLGEAFLTVWRQIYTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALHP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q9STE7	847	Putative disease resistan	yes	no	0.88	0.363	0.225	3e-12
Q39214	926	Disease resistance protei	no	no	0.871	0.329	0.245	2e-11
Q9M667	835	Disease resistance protei	no	no	0.628	0.263	0.280	2e-11
Q6L3N7	1292	Putative late blight resi	N/A	no	0.897	0.243	0.237	7e-11
Q6L3L0	1262	Putative late blight resi	N/A	no	0.897	0.248	0.239	1e-10
Q6L400	1284	Putative late blight resi	N/A	no	0.877	0.239	0.231	2e-10
Q6L3Z7	1317	Putative late blight resi	N/A	no	0.882	0.234	0.245	2e-10
Q6L406	1326	Putative late blight resi	N/A	no	0.911	0.240	0.239	3e-10
Q9STE5	847	Putative disease resistan	no	no	0.637	0.263	0.259	9e-10
Q8W3K3	910	Putative disease resistan	no	no	0.565	0.217	0.274	3e-09

>sp|Q9STE7|R13L3_ARATH Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=3 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 154/385 (40%), Gaps = 77/385 (20%)

Query: 6   WDNLEQVLPDNQNGSRVLITVTDPELLLSLE------------------------MENGE 41
           W++L++ LP +  GS+V+IT     +   +E                          N E
Sbjct: 286 WESLKRALPCDHRGSKVIITTRIRAIAEGVEGTVYAHKLRFLTFEESWTLFERKAFSNIE 345

Query: 42  KIRPDSVLNGGPMIRLKHESWQFFILHYGSMPLENYFLG------------EAFLTVWRQ 89
           K+  D    G  M++             G +PL    L             E   ++WR+
Sbjct: 346 KVDEDLQRTGKEMVK-----------KCGGLPLAIVVLSGLLSRKRTNEWHEVCASLWRR 394

Query: 90  -------IYTVMELPF-----HLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNG-- 135
                  I TV +L F      LK+C +Y  VFP   EI   +L  L VAEGFI  +   
Sbjct: 395 LKDNSIHISTVFDLSFKEMRHELKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEM 454

Query: 136 --EETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEE 193
             E+ A  Y+ EL+ R  +K ++R  R  + SC +   +       A++  FV + + ++
Sbjct: 455 MMEDVARCYIDELVDRSLVK-AERIERGKVMSCRIHDLLRDLAIKKAKELNFVNVYNEKQ 513

Query: 194 ESLANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKN--NHLNSKDYENFFKRFKYLR 251
            S    +R  +   + D++   +  +  ++SFL    +    ++N+ +      + K LR
Sbjct: 514 HSSDICRREVVHHLMNDYYLCDRRVNKRMRSFLFIGERRGFGYVNTTNL-----KLKLLR 568

Query: 252 VLNL------GSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSY 305
           VLN+         + +  P  +  L  L+YL +    +  L + +  L  L+TL+   + 
Sbjct: 569 VLNMEGLLFVSKNISNTLPDVIGELIHLRYLGIADTYVSILPASISNLRFLQTLDASGND 628

Query: 306 IDQSPHDIWMMQKLMHLYFYCISPC 330
             Q   D+  +  L H+    +  C
Sbjct: 629 PFQYTTDLSKLTSLRHVIGKFVGEC 653

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 156/374 (41%), Gaps = 69/374 (18%)

Query: 6   WDNLEQVLPDNQNGSRVLITVTD--------------PELLLSLEMEN----GEKIRPDS 47
           W  +   LPD   GSRV++T  D               E+ L  E E       K  P S
Sbjct: 294 WREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPAS 353

Query: 48  V-----LNGGPMIRLKHESWQFFILHYGSMPLENYFLGEAFLTVWRQIYTVM-------- 94
           +      N  P+ R   E  Q   L   S  L +    + F + W+++Y+ +        
Sbjct: 354 LEQCRTQNLEPIARKLVERCQGLPLAIAS--LGSMMSTKKFESEWKKVYSTLNWELNNNH 411

Query: 95  --------------ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFI-PYNG---E 136
                         +LP+ LK C +Y  +FP +  +  ++L ++W+A+ F+ P  G   E
Sbjct: 412 ELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAE 471

Query: 137 ETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGF--VWMPDMEEE 194
           E A+ YL EL++R  ++V         K+  +   I+     V++   F  V+  D + +
Sbjct: 472 EVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGD 531

Query: 195 SLANVKRCF------ILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFK 248
             A     +      I K++     S++ ++  L S L  SS  + +             
Sbjct: 532 DAAETMENYGSRHLCIQKEMTP--DSIRATN--LHSLLVCSSAKHKM------ELLPSLN 581

Query: 249 YLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQ 308
            LR L+L  + + + P  L  ++ LKYL L+   +K L      L+NLETL    S I++
Sbjct: 582 LLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEE 641

Query: 309 SPHDIWMMQKLMHL 322
            P  +W ++KL +L
Sbjct: 642 LPLGMWKLKKLRYL 655

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 15/235 (6%)

Query: 95  ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNG----EETAEHYLKELIHRG 150
           EL    K+C +YL +FP   EI   +L  L VAEGFI  +     E+ A +Y++ELI R 
Sbjct: 412 ELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRS 471

Query: 151 FIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWM-PDMEEESLANVKRCFILKDLI 209
            ++ + RR R  + SC +   +       +++  FV +  D   +  +   R  ++    
Sbjct: 472 LLE-AVRRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQF 530

Query: 210 DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLEN 269
             +SS K  +  ++SFL +  + +HL   D+E      K LRVL+ GS  L    +G  +
Sbjct: 531 KRYSSEKRKNKRMRSFL-YFGEFDHLVGLDFET----LKLLRVLDFGSLWLPFKING--D 583

Query: 270 LYLLKYLKLNIPSLK--CLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHL 322
           L  L+YL ++  S+    + +++  L  L+TL +  +Y  +   D+  +  L H+
Sbjct: 584 LIHLRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETIDLRKLTSLRHV 638

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L3N7|R1C3_SOLDE Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 154/396 (38%), Gaps = 82/396 (20%)

Query: 6    WDNLEQVLPDNQNGSRVLITV------------TDPELLLSLEMENGEKIRPDSVLNGGP 53
            WD+L    PD  N SR+++T             +DP  L   +     K+    V     
Sbjct: 627  WDDLSGCFPDVNNRSRIILTTRHHEVAKYASVHSDPLHLRMFDEVESWKLLEKKVFGEES 686

Query: 54   MIRLKHESWQFFILHYGSMPLENYFLG------EAFLTVWRQIYTVME------------ 95
               L  +  Q      G +PL    +       E  +  W Q+   +             
Sbjct: 687  CSPLLRDIGQRIAKMCGQLPLSIVLVAGILSEMEKEVEYWEQVANNLGTHIHNDSRAVVD 746

Query: 96   -----LPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIP----YNGEETAEHYLKEL 146
                 LP HLK C +Y   F     I   +L +LW++E F+      + E+ AE YL+ L
Sbjct: 747  QSYHVLPCHLKSCFLYFGAFLEDRVIDISRLIRLWISESFVKSCEGRSLEDIAEGYLENL 806

Query: 147  IHRGFIKVSKRRARD-TIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFIL 205
            I R  + V++R   D  +K+C +   +   L    E+         EE  L  + R  I 
Sbjct: 807  IGRNLVMVTQRDDSDGKVKACRLHDVL---LDFCKERAA-------EENFLLWINRDQIT 856

Query: 206  KDLIDFFSSLKHSDMY---LQSFLNHSSKNNHLNS---KDYENFFK-------------- 245
            K     +S  +H+ +    +++ +  S+  + + S   K+Y+ +F               
Sbjct: 857  KPSSCVYSHNQHAHLAFTDMKNLVEWSASCSRVGSVLFKNYDPYFAGRPLSSHAFSISRI 916

Query: 246  --RFKYLRVLNLG-SAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMP 302
               FK+L+VL+L    V+D  P+    L+ L+Y+  +I     + S +  L NLETL + 
Sbjct: 917  LLNFKFLKVLDLEHQVVIDSIPT---ELFYLRYISAHIEQ-NSIPSSISNLWNLETLILN 972

Query: 303  SSYIDQS-----PHDIWMMQKLMHLYFYCISPCTSK 333
             +          P  +W M KL HL+    SP   K
Sbjct: 973  RTSAATGKTLLLPSTVWDMVKLRHLHIPKFSPENKK 1008

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L3L0|R1B23_SOLDE Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum GN=R1B-23 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 154/396 (38%), Gaps = 82/396 (20%)

Query: 6   WDNLEQVLPDNQNGSRVLITV------------TDPELLLSLEMENGEKIRPDSVLNGGP 53
           WD+L    PD  N SR+++T             +DP  L   +     K+    V     
Sbjct: 597 WDDLSGCFPDVNNRSRIILTTRHHEVAKYASVHSDPLHLRMFDEVESWKLLEKKVFGEES 656

Query: 54  MIRLKHESWQFFILHYGSMPLENYFLG------EAFLTVWRQIYTVME------------ 95
              L  +  Q      G +PL    +       E  +  W Q+   +             
Sbjct: 657 CSPLLRDIGQRIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHNDSRAVVD 716

Query: 96  -----LPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIP----YNGEETAEHYLKEL 146
                LP HLK C +Y   F     I   +L +LW++E FI      + E+ AE YL+ L
Sbjct: 717 QSYHVLPCHLKSCFLYFGAFLEDRVIDIPRLIRLWISESFIKSCEGRSLEDIAEGYLENL 776

Query: 147 IHRGFIKVSKRRARD-TIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFIL 205
           I R  + V++R   D  +K+C +   +   L    E+         EE  L  + R  I 
Sbjct: 777 IGRNLVMVTQRDDSDGKVKACRLHDVL---LDFCKERAA-------EENFLLWINRDQIT 826

Query: 206 KDLIDFFSSLKHSDMY---LQSFLNHSSKNNHLNS---KDYENFFK-------------- 245
           K     +S  +H+ +    +++ +  S+  + + S   K+Y+ +F               
Sbjct: 827 KPSSCVYSHNQHAHLAFTDMKNLVEWSASCSCVGSVLFKNYDPYFAGRPLSSHAFSISRI 886

Query: 246 --RFKYLRVLNLG-SAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMP 302
              FK+L+VL+L    V+D  P+    L+ L+Y+  +I     + S +  L NLETL + 
Sbjct: 887 LLNFKFLKVLDLEHQVVIDSIPT---ELFYLRYISAHIEQ-NSIPSSISNLWNLETLILN 942

Query: 303 SSYIDQS-----PHDIWMMQKLMHLYFYCISPCTSK 333
            +          P  +W M KL HL+    SP   K
Sbjct: 943 RTSAATGKTLLLPSTVWDMVKLRHLHIPKFSPENKK 978

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L400|R1B16_SOLDE Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 148/385 (38%), Gaps = 78/385 (20%)

Query: 6    WDNLEQVLPDNQNGSRVLITV------------TDPELLLSLEMENGEKIRPDSVLNGGP 53
            WD+L    PD  N SR+++T             +DP  L   + +   K+    V     
Sbjct: 656  WDDLRGCFPDVNNRSRIILTTRHHEVAKYASVHSDPLHLRMFDKDESWKLLEKKVFGEQS 715

Query: 54   MIRLKHESWQFFILHYGSMPLENYFLG------EAFLTVWRQIYTVME------------ 95
               L  +         G +PL    +       E  +  W Q+   +             
Sbjct: 716  CSPLLKDVGLRIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHNDSRAIVN 775

Query: 96   -----LPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNG----EETAEHYLKEL 146
                 LP HLK C +Y   F     I   +L +LW++E FI  +     E+ AE YL+ L
Sbjct: 776  QSYHVLPCHLKSCFLYFGAFLEDEVIDISRLIRLWISESFIKSSEGRRLEDIAEGYLENL 835

Query: 147  IHRGFIKVSKRRARD-TIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFIL 205
            I R  + V++R   D  +K+C +   +       A +  F+   + ++ + A        
Sbjct: 836  IGRNLVMVTQRADSDGKVKACRLHDVLLDFCKERAAEENFLLWINRDQSTNA-------- 887

Query: 206  KDLIDFFSSLKHSDMY---LQSFLNHSSKNNHLNSKDYENFFKR---------------F 247
                  +S  +H+ +    + S +  S+  + + S   +N+ +R               F
Sbjct: 888  -----VYSHKRHAHLAFTEMDSLVEWSASCSLVGSVLLKNYARRPLSSPAFSISHILLNF 942

Query: 248  KYLRVLNLG-SAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMP--SS 304
            K+L+VL+L    V+D  P+    L+ L+YL   I     + S +  L NLETL +   S 
Sbjct: 943  KFLKVLDLEHQVVIDSIPT---ELFYLRYLSARIEQ-NSIPSSISNLWNLETLILKHVSR 998

Query: 305  YIDQSPHDIWMMQKLMHLYFYCISP 329
                 P  +W M KL HL+     P
Sbjct: 999  CTVLLPSTVWDMVKLRHLHIPNFRP 1023

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L3Z7|R1B14_SOLDE Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 152/387 (39%), Gaps = 78/387 (20%)

Query: 6    WDNLEQVLPDNQNGSRVLITV------------TDPELLLSLEMENGEKIRPDSVLNGGP 53
            WD+L    PD  N SR+++T             +DP  L   + +   K+    V     
Sbjct: 657  WDDLRGCFPDANNRSRIILTTRHHEVAKYASVHSDPLHLRMFDEDESWKLLEKKVFGEKR 716

Query: 54   MIRLKHESWQFFILHY-GSMPLENYFLG------EAFLTVWRQIYTVME----------- 95
               L  +     I    G +PL    +       E  +  W Q+   +            
Sbjct: 717  CSSLLLKDVGLRIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHNDSRAIV 776

Query: 96   ------LPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNG----EETAEHYLKE 145
                  LP HLK C +Y   F     I   +L +LW++E FI  +     E+ AE YL+ 
Sbjct: 777  NQSYHVLPCHLKSCFLYFGAFLEDEVIDISRLIRLWISESFIKSSEGRRLEDIAEGYLEN 836

Query: 146  LIHRGFIKVSKRRARD-TIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKR--- 201
            LI R  + V++R   D  +K+C +   +       A +  F+   + ++ S   V     
Sbjct: 837  LIGRNLVMVTQRADSDGKVKACRLHDVLLDFCKERAAEENFLLWINRDQISTKAVYSHKQ 896

Query: 202  ----CFI-LKDLIDFFSS--------LKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFK 248
                 F  + +L+++ +S         K+ D YL S    +S                FK
Sbjct: 897  HAHLAFTEMDNLVEWSASCSLVGSVLFKNPDSYLYSPAFSTSL-----------ILLNFK 945

Query: 249  YLRVLNLG-SAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYID 307
            +L+VL+L    V+D  P+    L+ L+YL  +I     + S +  L NLETL + S+ + 
Sbjct: 946  FLKVLDLEHQVVIDFIPT---ELFYLRYLSASIEQ-NSIPSSISNLWNLETLILKSTPVG 1001

Query: 308  QS-----PHDIWMMQKLMHLYFYCISP 329
            +      P  IW M KL HL+    SP
Sbjct: 1002 RHNTLLLPSTIWDMVKLRHLHIPKFSP 1028

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L406|R1B19_SOLDE Putative late blight resistance protein homolog R1B-19 OS=Solanum demissum GN=R1B-19 PE=5 SV=2

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 152/405 (37%), Gaps = 86/405 (21%)

Query: 6    WDNLEQVLPDNQNGSRVLITV------------TDPELLLSLEMENGEKIRPDSVLNGGP 53
            WD+L    PD  N SR+++T              DP  L   +     K    +V     
Sbjct: 659  WDDLRGCFPDTNNRSRIILTTRHHEVAKYASVHIDPLHLRMFDENESWKFLEKNVFGEES 718

Query: 54   MIRLKHESWQFFILHYGSMPLENYFLG------EAFLTVWRQIYTVME------------ 95
               L  +  Q      G +P     +       E  +  W Q+   +             
Sbjct: 719  CSPLLRDVGQRIAKMCGQLPFSIVLVAGIPSEMEKEVECWEQVANNLGTRIHNDSRAIVD 778

Query: 96   -----LPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNG----EETAEHYLKEL 146
                 LP HLK C +Y   F   + I   +L +LW++E FI  +     E+ AE YL+ L
Sbjct: 779  QSYHVLPCHLKSCFLYFAAFLEDVVIYISRLLRLWISEAFIKSSEGRSLEDIAEGYLENL 838

Query: 147  IHRGFIKVSKRRARD-TIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFIL 205
            I R  + V++R   D  +K+C +   +            F      EE  L  + R  I 
Sbjct: 839  IGRNLVMVTQRADSDGKVKTCRLHDVLL----------DFCKKRAAEENFLLWINRDLIT 888

Query: 206  KDLIDFFSSLKHSDMYLQSFLN-------HSSKNNHLNSKDYENFFK------------- 245
            K     +S  +H+ +      N        S   + + SK YE +F              
Sbjct: 889  KPFSCVYSHKQHAHLAFTEMHNLVEWSASCSFVGSVVLSKKYEPYFSIDLYSFYDFAISR 948

Query: 246  ---RFKYLRVLNLGSAV-LDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEM 301
                FK+L+VL+L   V +D  P+    L  LKY   +I     + S +  L N ETL++
Sbjct: 949  NLPNFKFLKVLDLEHQVFIDFIPT---ELVYLKYFSAHIKQ-NSIPSSIYNLWNPETLKL 1004

Query: 302  PS-SYIDQS----PHDIWMMQKLMHLYFYCISPCTSKNYSSSLKN 341
                ++ +     P  +W M KL HLY   I   +++N  + L+N
Sbjct: 1005 KRPRHVRRCTLLLPSTVWDMVKLRHLY---IPDFSTENEEALLEN 1046

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q9STE5|R13L2_ARATH Putative disease resistance RPP13-like protein 2 OS=Arabidopsis thaliana GN=RPP13L2 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 16/239 (6%)

Query: 95  ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEET----AEHYLKELIHRG 150
           ++   LK+C +YL VFP   E+   +L QL VAEGFI  + E T    A +Y+++L++  
Sbjct: 405 DMGHELKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFIQEDEEMTMEDVARYYIEDLVYIS 464

Query: 151 FIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLID 210
            ++V KR+ +  + S  +   +       +++  FV + D E+ S    +R  +   + D
Sbjct: 465 LVEVVKRK-KGKLMSFRIHDLVREFTIKKSKELNFVNVYD-EQHSSTTSRREVVHHLMDD 522

Query: 211 FFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSA--VLDQY----- 263
            +   +  +  ++SFL    + N +     E    + K LRVLNLG    +   Y     
Sbjct: 523 NYLCDRRVNTQMRSFLFFGKRRNDITY--VETITLKLKLLRVLNLGGLHFICQGYSPWSL 580

Query: 264 PSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHL 322
           P  +  L  L+YL +    +  L   +  L  L+TL+   +  ++   D+  +  L HL
Sbjct: 581 PDVIGGLVHLRYLGIADTVVNNLPDFISNLRFLQTLDASGNSFERMT-DLSNLTSLRHL 638

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 13/211 (6%)

Query: 95  ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIP---YNGE---ETAEHYLKELIH 148
           ELP +LK C +YL  FP    I   +L   W AEG +    Y+G+   +  E Y++EL+ 
Sbjct: 419 ELPSYLKHCFLYLAHFPEDHNIKVEKLSYCWAAEGILEPRHYHGQTIRDVGESYIEELVR 478

Query: 149 RGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVW----MPDMEEESLANVKRCFI 204
           R  +   +       ++C++   +     L A++  FV     +P           R F+
Sbjct: 479 RNMVIAERDVTTLRFEACHLHDMMREVCLLKAKEENFVQIASILPPTANSQYPGTSRRFV 538

Query: 205 LKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD--Q 262
            ++      S   ++  LQS L    +N   + K   + F R + LRVL+L  A  +   
Sbjct: 539 SQNPTTLHVSRDINNPKLQSLLI-VWENRRKSWKLLGSSFIRLELLRVLDLYKAKFEGRN 597

Query: 263 YPSGLENLYLLKYLKLNIPSLKCLHSLLCTL 293
            PSG+  L  L+YL L++  +  L S L  L
Sbjct: 598 LPSGIGKLIHLRYLNLDLARVSRLPSSLGNL 628

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
147766035	902	hypothetical protein VITISV_038742 [Viti	0.9	0.349	0.264	3e-25
356577907	921	PREDICTED: disease resistance protein RP	0.905	0.344	0.277	4e-25
359489156	899	PREDICTED: probable disease resistance p	0.897	0.349	0.303	1e-24
359489148	897	PREDICTED: probable disease resistance R	0.942	0.367	0.294	1e-24
297744337	591	unnamed protein product [Vitis vinifera]	0.874	0.517	0.274	1e-24
359496848	856	PREDICTED: disease resistance RPP8-like	0.657	0.268	0.296	2e-23
359491404	922	PREDICTED: probable disease resistance R	0.885	0.336	0.272	2e-23
351727228	920	disease resistance protein [Glycine max]	0.905	0.344	0.267	3e-23
222640579	854	hypothetical protein OsJ_27368 [Oryza sa	0.902	0.370	0.254	8e-23
115476476	907	Os08g0424700 [Oryza sativa Japonica Grou	0.902	0.348	0.254	9e-23

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 165/371 (44%), Gaps = 56/371 (15%)

Query: 6   WDNLEQVLPDNQNGSRVLITV--------TDPELLL------------SLEMENGEKIRP 45
           WD+L+ + PD  N SRVL T          DP                 L ++    +  
Sbjct: 291 WDDLKTLFPDVMNASRVLFTTRIRDVAIHADPRSATHELHFLNQAQSWELFLKKAFPMEG 350

Query: 46  DSVLNGGPMIRLKHESWQFFILHYGSMPLENYFLG------EAFLTVW------------ 87
           DSV     + RL  +     +   G +PL    +G      E   +VW            
Sbjct: 351 DSVTCPPELERLGTQ----IVAKCGGLPLAIVIIGGLLSRKEKXPSVWLRVLQSISWQLN 406

Query: 88  ---RQIYTVM-----ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEET- 138
              RQ+  ++     +LP++LK C +Y  +FP  +EI   +L  LW+AEGF+   GEE+ 
Sbjct: 407 NDSRQLMEILALSYNDLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESM 466

Query: 139 ---AEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDME--E 193
              AE +L+EL+ R  I+V+++R    IK C +   +       A++  F+ + D    +
Sbjct: 467 EDVAEDFLEELVDRSMIQVAEKRYNGKIKMCRIHDLLRDLAMSEAKECKFLEILDSTNID 526

Query: 194 ESLANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVL 253
            S+    R   +   ++ +  L+H + + +S L+ S     L  + +++ F+  K LRVL
Sbjct: 527 TSVTTRARRISVHSSLEEYMKLRHPNPHFRSMLHFSRCEESLRREQWKSLFESLKLLRVL 586

Query: 254 NLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDI 313
           +L        P  +  L  L+YL L    L+ L S +    NL+TL++ ++ + + P  +
Sbjct: 587 DLERVQTHALPKEIRELVHLRYLGLRRTGLQRLPSSVQNFCNLQTLDIRATKVSRLPIQL 646

Query: 314 WMMQKLMHLYF 324
           W M  L HLY 
Sbjct: 647 WNMPGLRHLYL 657

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577907|ref|XP_003557063.1| PREDICTED: disease resistance protein RPM1-like [Glycine max]

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 170/382 (44%), Gaps = 65/382 (17%)

Query: 6   WDNLEQVLPDNQNGSRVLITVTD------------------------------------- 28
           WD++E  + DN+NGSR+LIT  D                                     
Sbjct: 291 WDHIESAVIDNKNGSRILITTRDEKVAEYCRKSSFVEVHKLEKPLTEEESLKLFCKKAFQ 350

Query: 29  -------PELL--LSLEMENGEKIRPDSVLNGGPMIRLKHES---WQFFILHYGSMPLEN 76
                  PE L  +SLE+    K  P +++  G ++  K ES   W  F     S+ LE 
Sbjct: 351 YSSDGDCPEELKDISLEIVRKCKGLPLAIVAIGGLLSQKDESAPEWGQFSRDL-SLDLER 409

Query: 77  YFLGEAFLTVWRQIYTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNG- 135
                +   +    Y   +LP +L+ C +Y  ++P   E+ + +L + W+AEGF+ +   
Sbjct: 410 NSELNSITKILGLSYD--DLPINLRSCLLYFGMYPEDYEVESDRLIRQWIAEGFVKHETG 467

Query: 136 ---EETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDME 192
              EE  + YL  L+ R  ++ S  R  D +KSC V   I+  +    + TGF    D  
Sbjct: 468 KSLEEVGQQYLSGLVRRSLVQASSLRIDDKVKSCRVHDLIHDMILRKVKDTGFCQYIDGP 527

Query: 193 EESLAN--VKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYL 250
           ++S+++  V+R  I     DF  S+  S   ++S L  + K+  L+      F   +  L
Sbjct: 528 DQSVSSKIVRRLTIATH--DFSGSIGSSP--IRSILIMTGKDEKLSQDLVNKFPTNYMLL 583

Query: 251 RVLNL-GSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQS 309
           +VL+  GS +L   P  L NL  LKYL      ++ L   +  L NLETL++  +Y+ + 
Sbjct: 584 KVLDFEGSVLLSDVPENLGNLCHLKYLSFRNTFIESLPKSIGKLQNLETLDIRGTYVSEM 643

Query: 310 PHDIWMMQKLMHLYFYCISPCT 331
           P +I  ++KL HL  Y  S C+
Sbjct: 644 PEEISKLKKLRHLLAY--SRCS 663

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489156|ref|XP_003633889.1| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera]

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 162/369 (43%), Gaps = 55/369 (14%)

Query: 4   QQWDNLEQVLPDNQNGSRVLITV--------TDP-----ELLLSLEMENGEKIRPDSVLN 50
           + WD L    PD+ NGSRVLIT          DP     EL    E E+ E       L 
Sbjct: 272 EAWDRLGLYFPDSVNGSRVLITSRNKQIGLYADPQTIPHELSFLTEEESWELFLKKIFLA 331

Query: 51  GGPMI---RLKHESWQFFILHYGSMPLENYFLG------EAFLTVWRQIYTVM------- 94
           G       R   E  +  + + G +PL    LG      E     W+++   +       
Sbjct: 332 GSANAVCPRELEELGKKIVANCGGLPLAIVVLGGLLSRKEKTPLSWQKVLDSLTWHLNQG 391

Query: 95  -------------ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEE---- 137
                        ++P++LK C +Y  +FP   EI T +L +LWVAEGFI   GEE    
Sbjct: 392 PDSCLGVLALSYNDMPYYLKSCFLYCGLFPEDSEIRTDKLIRLWVAEGFIQRRGEEIAED 451

Query: 138 TAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFV-WMPDMEEESL 196
            AE +L+EL+HR  I+V+ R     + SC +   +       A+ T F      ++  S 
Sbjct: 452 VAEDHLQELVHRSMIQVAARSFDGRVMSCRMHDLLRDLAISEAKDTKFFEGYESIDSTSP 511

Query: 197 ANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSS--KNNHLNSKDYENFFKRFKYLRVLN 254
            +V+R  I +        L H+   L+SF+  S   + N L S       +R K L VL+
Sbjct: 512 VSVRRLTIHQGKKTNSKHL-HTSRSLRSFICFSVCFQENILRS-----LHRRVKLLTVLD 565

Query: 255 LGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIW 314
           L    ++  P G+  L  LKYL L    +K L S +  L NL+TL+  S++I+  P  IW
Sbjct: 566 LERMPINTIPEGIGELIHLKYLCLRRTRIKRLPSSIGRLTNLQTLDFQSTFIEIIPSTIW 625

Query: 315 MMQKLMHLY 323
            +  L HLY
Sbjct: 626 KLHHLRHLY 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489148|ref|XP_003633887.1| PREDICTED: probable disease resistance RPP8-like protein 4-like [Vitis vinifera]

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 168/387 (43%), Gaps = 57/387 (14%)

Query: 4   QQWDNLEQVLPDNQNGSRVLITV--------TDP-----ELLLSLEMENGEKIRPDSVLN 50
           + WD L    PD+ NGSRVLIT          DP     EL    E E+ E       L 
Sbjct: 271 EAWDRLGLYFPDSVNGSRVLITSRNKEIGFYADPQAIPHELSFLTEEESWELFLKKIFLA 330

Query: 51  GGPMI---RLKHESWQFFILHYGSMPLENYFLG------EAFLTVWRQIYTVM------- 94
           G       R   E  +  + + G +PL    LG      E     W+++   +       
Sbjct: 331 GSANAVCPRELEELGKKIVANCGGLPLAIVVLGGLLSRKEKTPLSWQKVLDSLTWHLNQG 390

Query: 95  -------------ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNG----EE 137
                        ++P++LK C +Y  +FP   EI T +L +LWVAEGFI   G    E+
Sbjct: 391 PDSCLGVLALSYNDMPYYLKSCFLYCGLFPEDSEIWTDKLIRLWVAEGFIQRRGVEIAED 450

Query: 138 TAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFV-WMPDMEEESL 196
            AE +L+EL+HR  I+V+ R     + SC +   +       A+ T F      ++  S 
Sbjct: 451 VAEDHLQELVHRSMIQVAARSFDGRVMSCRMHDLLRDLAISEAKDTKFFEGYESIDSTSP 510

Query: 197 ANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSS--KNNHLNSKDYENFFKRFKYLRVLN 254
            +V+R  I +        L H+   L+SF+  S   + N L S       +R K L VL+
Sbjct: 511 VSVRRLTIHQGKKTNSKHL-HTSRSLRSFICFSVCFQKNSLRS-----LHRRVKLLTVLD 564

Query: 255 LGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIW 314
           L    ++  P G+  L  LKYL L    +K L S +  L NL+TL+  S+ I+  P  IW
Sbjct: 565 LEGMTINTIPEGIGELIHLKYLCLRRTRIKRLPSSIGRLTNLQTLDFRSTLIEIIPSTIW 624

Query: 315 MMQKLMHLYFYCISPCTSKNYSSSLKN 341
            +  L HL  YC    +S++     +N
Sbjct: 625 KLHHLRHL--YCRGVVSSQSVIDKFRN 649

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744337|emb|CBI37307.3| unnamed protein product [Vitis vinifera]

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 169/371 (45%), Gaps = 65/371 (17%)

Query: 3   FQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKI---RPDS--------VLNG 51
           F  + ++   LP+N+ GSR++IT  + +++   + +   ++    PDS           G
Sbjct: 141 FHNFCHITPTLPENKKGSRIIITTRNDDVVAGCKDDYIHRLPHLSPDSSWELFCKKAFQG 200

Query: 52  GPMIRLKHESWQFFILHYGSMPLENYFLG------EAFLTVWRQ---------------- 89
                LK  S    +   G +PL    +G      E  ++ WR+                
Sbjct: 201 SCPPELKKLS-DDIVKRCGGLPLAIVAIGGLLSRKEKIVSEWRKFSDSLGFELESNSHLE 259

Query: 90  -IYTVM-----ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNG----EETA 139
            I T++     +LP+ LK C +YL +FP    I    L +LW+AEGF+        E+TA
Sbjct: 260 SINTILSLSYYDLPYQLKSCFLYLAIFPKDYTIKCGILTRLWIAEGFVKAKRGVTLEDTA 319

Query: 140 EHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANV 199
           E +L ELIHR  ++VS+      IK C++   +   +   AE+  F  +       +A  
Sbjct: 320 EEFLTELIHRSLVQVSQVYIDGNIKRCHIHDLMREIILKKAEELSFCSV-------MAGE 372

Query: 200 KRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSK--------DYENFFKRFKYLR 251
             CF  +     F  L   +    + L+ +SK +H+ S           E    +FK L+
Sbjct: 373 ASCFDGR-----FRRLSIQNSS-NNVLDITSKKSHIRSIFLYNSEMFSLETLASKFKLLK 426

Query: 252 VLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPH 311
           VL+LG A LD+ P  L NL+ L+YL L    +K L   +  L NL+TL++  S+++  P 
Sbjct: 427 VLDLGGAPLDRIPEDLGNLFHLRYLSLRKTKVKMLPRSIGKLQNLQTLDLKYSFVEDLPV 486

Query: 312 DIWMMQKLMHL 322
           +I  +QKL ++
Sbjct: 487 EINRLQKLRNI 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 122/236 (51%), Gaps = 6/236 (2%)

Query: 95  ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEET----AEHYLKELIHRG 150
           +LP++LK C +Y  +FP  +EI   +L  LW+AEGF+   GEE+    AE +L+EL+ R 
Sbjct: 376 DLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRS 435

Query: 151 FIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDME--EESLANVKRCFILKDL 208
            I+V+++R    IK+C +   +       A++  F+ + D    + S+    R   +   
Sbjct: 436 MIQVAEKRYNGKIKACRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRISVHSS 495

Query: 209 IDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLE 268
           ++ +  L+H + + +S L+ S     L    +++ F+  K LRVL+L        P  + 
Sbjct: 496 LEEYMKLRHPNPHFRSMLHFSRCEESLRRDQWKSLFESLKLLRVLDLERVQTHALPKEIR 555

Query: 269 NLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYF 324
            L  L+YL L    L+ L S +    NL+TL++ ++ + + P  +W M  L HLY 
Sbjct: 556 ELVHLRYLGLRRTGLQRLPSSIQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLYL 611

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 173/403 (42%), Gaps = 93/403 (23%)

Query: 6   WDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFF 65
           WD+L+   PD +NGSR++ T    ++ L  +        P S L+  P +    + W+  
Sbjct: 299 WDDLKAAFPDRKNGSRIIFTTRFKDVALHAD--------PRSPLHE-PCLLSDEDGWELL 349

Query: 66  -------------------------ILHYGSMPLENYFLG------EAFLTVWRQIYTVM 94
                                    +   G +PL    +G      +A    W ++   +
Sbjct: 350 SRKVCLEWNAKTSLPPWSKELGIQIVKRCGGLPLAIVVMGGLLSRKDATFNEWLKVLQSV 409

Query: 95  --------------------ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYN 134
                               +LP++LK C +Y  +FP   EIS R+L  LWVAEGF+   
Sbjct: 410 HWQLAQDPTQCAEILALSYSDLPYYLKSCFLYFGLFPEDYEISARRLILLWVAEGFVQPR 469

Query: 135 GEE----TAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGF--VWM 188
           G+E     AE YL+EL+ R  I+V+ R++   IK+C V   ++       ++  F  +  
Sbjct: 470 GQEPLEDVAEDYLEELVGRSMIQVATRKSNGRIKTCCVHDLLHELSVSKGKEDQFLDIIH 529

Query: 189 PDMEEESLANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDY-ENFF--- 244
            +    SL  V+R  I               + +     ++SK   L   D  E  F   
Sbjct: 530 GEFTVSSLTRVRRLAI--------------HLGVPPTTKNTSKVRSLLCFDICEPSFQEL 575

Query: 245 KRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSS 304
           ++FK LR+L+L    + +  S + NL  L+YL L    LK L   +  LLNL+TL++ S+
Sbjct: 576 RKFKLLRILDLEGVYISRLHSSIGNLIHLRYLGLRGTWLKKLPPSIQFLLNLQTLDLRST 635

Query: 305 YIDQSPHDIWMMQKLMHLYF-----YCISPCTSKNYSSSLKNL 342
            ++  P  IW MQKL HLYF       ++P T     +SL NL
Sbjct: 636 LLNPIPIVIWKMQKLRHLYFNELEEMAVNPPT----DASLANL 674

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727228|ref|NP_001235618.1| disease resistance protein [Glycine max] gi|223452576|gb|ACM89615.1| disease resistance protein [Glycine max]

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 166/381 (43%), Gaps = 64/381 (16%)

Query: 6   WDNLEQVLPDNQNGSRVLITVTD------------------------------------- 28
           WD++E  + DN+NGSR+LIT  D                                     
Sbjct: 291 WDHIESAVIDNKNGSRILITTRDEKVAEYCRKSSFVEVHNLEKPLTEEESLKLFCKKAFQ 350

Query: 29  -------PELL--LSLEMENGEKIRPDSVLNGGPMIRLKHES---WQFFILHYGSMPLEN 76
                  PE L  +SLE+    K  P +++  G ++  K ES   W  F     S+ LE 
Sbjct: 351 YSSDGDCPEELKDISLEIVRKCKDLPLAIVAIGGLLSQKDESAPEWGQFSRDL-SLDLER 409

Query: 77  YFLGEAFLTVWRQIYTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNG- 135
                +   +    Y   +LP +L+ C +Y  ++P   E+ + +L + W+ EGF+ +   
Sbjct: 410 NSELNSITKILGLSYD--DLPINLRSCLLYFGMYPEDYEVKSDRLIRQWITEGFVKHETG 467

Query: 136 ---EETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDME 192
              EE  + YL  L+HR  ++VS  R    +K C V   I+  +    + TGF    D  
Sbjct: 468 KSLEEVGQPYLSGLVHRSLVQVSSLRIDGKVKRCRVHDLIHDMILRKVKDTGFCQYIDGR 527

Query: 193 EESLAN--VKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYL 250
           ++S+++  V+R  I     DF  S + S   ++S L  + K+ +L+      F   +  L
Sbjct: 528 DQSVSSNIVRRLTIATH--DFSGSTRSSP--IRSILIMTGKDENLSQDLVNKFPTNYMLL 583

Query: 251 RVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSP 310
           +VL+   +     P  L NL  LKYL      +  L   +  LLNLETL++  + + + P
Sbjct: 584 KVLDFEGSAFSYVPENLGNLCHLKYLSFRYTWIASLPKSIGKLLNLETLDIRGTGVSEMP 643

Query: 311 HDIWMMQKLMHLYFYCISPCT 331
            +I  ++KL HL  Y  S C+
Sbjct: 644 EEISKLKKLRHLLAY--SRCS 662

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222640579|gb|EEE68711.1| hypothetical protein OsJ_27368 [Oryza sativa Japonica Group]

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 158/366 (43%), Gaps = 50/366 (13%)

Query: 6   WDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGG-----------PM 54
           WD L+  LP+N  GSR++++    E+     + +  +I     LN             P 
Sbjct: 229 WDYLKLALPNNGQGSRIIVSTRAQEIGRDCRLASDIQIFEKRPLNEDDAWLLFCNKAFPA 288

Query: 55  IRLK-----HESWQFFILHYGSMPLENYFLG------EAFLTVWRQI------------- 90
           I+ +      E+ +  +     +PL    +G      E  + VW+ +             
Sbjct: 289 IQARCPAELEETGRKIVRECHGVPLLVVTIGGLMSMKEQTVQVWKNVLDNLHKKYLPEFT 348

Query: 91  ------YTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGE----ETAE 140
                 +   +LP HLK C +Y  +FP    I    L +LW+AEGFI  + E    +TA 
Sbjct: 349 LPSILWFAYSDLPHHLKCCLLYFIMFPRKYSIKRMTLIRLWMAEGFIKNDQESTLEDTAG 408

Query: 141 HYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGF-VWMPDMEEESLANV 199
            YL ELI RG ++V+       +KSC V   +   + L + +  F + +     +   NV
Sbjct: 409 RYLTELIDRGMVQVADFYDYGRVKSCSVHDMLREIIILKSTEDNFGIPVTRGVNKVRGNV 468

Query: 200 KRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV 259
           +R  I+    DF      +++        SS    +++     F   F+ LR+L+L  A 
Sbjct: 469 RRLSIINTNDDFLEDNSCTNLRTLFVFGASS----ISTTSLHAFLVGFRLLRILDLEGAP 524

Query: 260 LDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKL 319
           ++  P  L +L+ L+YL L    +  L   L  ++NL+TL++  +Y+ Q P  I  ++ L
Sbjct: 525 VESLPDELPDLFYLRYLSLRNTRIDKLPKSLKKMMNLQTLDLKGTYVSQLPSGITKLESL 584

Query: 320 MHLYFY 325
            HL  Y
Sbjct: 585 RHLLAY 590

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115476476|ref|NP_001061834.1| Os08g0424700 [Oryza sativa Japonica Group] gi|27817976|dbj|BAC55740.1| putative disease resistance gene homolog [Oryza sativa Japonica Group] gi|37806292|dbj|BAC99807.1| putative disease resistance gene homolog [Oryza sativa Japonica Group] gi|113623803|dbj|BAF23748.1| Os08g0424700 [Oryza sativa Japonica Group] gi|161376418|gb|ABX71479.1| putative disease resistance-like protein [Oryza sativa Japonica Group]

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 158/366 (43%), Gaps = 50/366 (13%)

Query: 6   WDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGG-----------PM 54
           WD L+  LP+N  GSR++++    E+     + +  +I     LN             P 
Sbjct: 282 WDYLKLALPNNGQGSRIIVSTRAQEIGRDCRLASDIQIFEKRPLNEDDAWLLFCNKAFPA 341

Query: 55  IRLK-----HESWQFFILHYGSMPLENYFLG------EAFLTVWRQI------------- 90
           I+ +      E+ +  +     +PL    +G      E  + VW+ +             
Sbjct: 342 IQARCPAELEETGRKIVRECHGVPLLVVTIGGLMSMKEQTVQVWKNVLDNLHKKYLPEFT 401

Query: 91  ------YTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGE----ETAE 140
                 +   +LP HLK C +Y  +FP    I    L +LW+AEGFI  + E    +TA 
Sbjct: 402 LPSILWFAYSDLPHHLKCCLLYFIMFPRKYSIKRMTLIRLWMAEGFIKNDQESTLEDTAG 461

Query: 141 HYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGF-VWMPDMEEESLANV 199
            YL ELI RG ++V+       +KSC V   +   + L + +  F + +     +   NV
Sbjct: 462 RYLTELIDRGMVQVADFYDYGRVKSCSVHDMLREIIILKSTEDNFGIPVTRGVNKVRGNV 521

Query: 200 KRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV 259
           +R  I+    DF      +++        SS    +++     F   F+ LR+L+L  A 
Sbjct: 522 RRLSIINTNDDFLEDNSCTNLRTLFVFGASS----ISTTSLHAFLVGFRLLRILDLEGAP 577

Query: 260 LDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKL 319
           ++  P  L +L+ L+YL L    +  L   L  ++NL+TL++  +Y+ Q P  I  ++ L
Sbjct: 578 VESLPDELPDLFYLRYLSLRNTRIDKLPKSLKKMMNLQTLDLKGTYVSQLPSGITKLESL 637

Query: 320 MHLYFY 325
            HL  Y
Sbjct: 638 RHLLAY 643

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.445	0.186	0.272	3.9e-08
TAIR|locus:2102857	847	AT3G46710 [Arabidopsis thalian	0.451	0.186	0.271	1.4e-06
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.345	0.142	0.308	1.4e-06
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.454	0.186	0.257	5.4e-06
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.411	0.158	0.299	6e-06
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.322	0.125	0.319	1.3e-05
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.171	0.064	0.359	3.1e-05
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.454	0.156	0.254	4.4e-05
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.454	0.156	0.254	4.4e-05
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.468	0.144	0.258	4.6e-05

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
 Identities = 46/169 (27%), Positives = 76/169 (44%)

Query:    95 ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGE----ETAEHYLKELIHRG 150
             EL    K+C +YL +FP   EI   +L  L VAEGFI  + E    + A +Y++ELI R 
Sbjct:   412 ELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRS 471

Query:   151 FIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFV--WMPDMEEESLANVKRCFILKDL 208
              ++ + RR R  + SC +   +       +++  FV  +   + + S    +R  ++   
Sbjct:   472 LLE-AVRRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRR-EVVHHQ 529

Query:   209 IDFFSSLKHSDMYLQXXXXXXXXXXXXXXXDYENFFKRFKYLRVLNLGS 257
                +SS K  +  ++               D+E      K LRVL+ GS
Sbjct:   530 FKRYSSEKRKNKRMRSFLYFGEFDHLVGL-DFETL----KLLRVLDFGS 573

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:2102857 AT3G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
 Identities = 45/166 (27%), Positives = 77/166 (46%)

Query:    95 ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAE----HYLKELIHRG 150
             ++   LK+C +YL VFP   E+   +L QL VAEGFI  + E T E    +Y+++L++  
Sbjct:   405 DMGHELKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFIQEDEEMTMEDVARYYIEDLVYIS 464

Query:   151 FIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLID 210
              ++V KR+ +  + S  +   +       +++  FV + D  E+  +   R  ++  L+D
Sbjct:   465 LVEVVKRK-KGKLMSFRIHDLVREFTIKKSKELNFVNVYD--EQHSSTTSRREVVHHLMD 521

Query:   211 FFSSLKHSDMYLQXXXXXXXXXXXXXXXDYENFFKRFKYLRVLNLG 256
               + L    +  Q                 E    + K LRVLNLG
Sbjct:   522 D-NYLCDRRVNTQMRSFLFFGKRRNDITYVETITLKLKLLRVLNLG 566

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 41/133 (30%), Positives = 69/133 (51%)

Query:    90 IYTVMELPF----H-LKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGE----ETAE 140
             I TV +L F    H LK+C +Y  VFP   EI   +L  L VAEGFI  + E    + A 
Sbjct:   402 ISTVFDLSFKEMRHELKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEMMMEDVAR 461

Query:   141 HYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVK 200
              Y+ EL+ R  +K ++R  R  + SC +   +       A++  FV + + ++ S +++ 
Sbjct:   462 CYIDELVDRSLVK-AERIERGKVMSCRIHDLLRDLAIKKAKELNFVNVYNEKQHS-SDIC 519

Query:   201 RCFILKDLI-DFF 212
             R  ++  L+ D++
Sbjct:   520 RREVVHHLMNDYY 532

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
 Identities = 44/171 (25%), Positives = 70/171 (40%)

Query:    95 ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPY-NGE---ETAEHYLKELIHRG 150
             ELP HLK C + L ++P    I  +QL   W+ EGF+ + NG    E+ E     L +R 
Sbjct:   410 ELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSATESGEDCFSGLTNRC 469

Query:   151 FIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLID 210
              I+V  +    TI +C +   +   +  +A+K  F        E L N +   I  +  +
Sbjct:   470 LIEVVDKTYSGTIITCKIHDMVRDLVIDIAKKDSF-----SNPEGL-NCRHLGISGNFDE 523

Query:   211 FFSSLKHSDMYLQXXXXXXXXXXXXXXXDYENFFKRFKYLRVLNLGSAVLD 261
                 +K +                    D    F   KYLRVL++  ++ D
Sbjct:   524 --KQIKVNHKLRGVVSTTKTGEVNKLNSDLAKKFTDCKYLRVLDISKSIFD 572

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
 Identities = 47/157 (29%), Positives = 77/157 (49%)

Query:     4 QQWDNLEQVLPDNQNGSRVLITVTDPEL-LLSLEMENGEKIRPDSVLNGGPMIRLKHE-- 60
             + W   E+++   ++ + V +   D E+  +  EM       P +V   G ++  KH   
Sbjct:   325 ESWKLCERIVFPRRDETEVRL---DEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHTVP 381

Query:    61 SWQFFILHYGSMPLENYFLGEAFL-TVWRQIYTVME-LPFHLKVCCIYLCVFPPSIEIST 118
              W+    + GS  +   +L +  L +V+R +    E LP HLK C + L  FP   EIST
Sbjct:   382 EWKRVFDNIGSQIVGGSWLDDNSLNSVYRILSLSYEDLPTHLKHCFLNLAHFPEDSEIST 441

Query:   119 RQLYQLWVAEGFIPYNG---EETAEHYLKELIHRGFI 152
               L+  W AEG   Y+G   E++ E+YL+EL+ R  +
Sbjct:   442 YSLFYYWAAEGI--YDGSTIEDSGEYYLEELVRRNLV 476

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
 Identities = 39/122 (31%), Positives = 59/122 (48%)

Query:    52 GPMIRLKHES--WQFFILHYGSMPLENYFLGEAFL-TVWRQIYTVME-LPFHLKVCCIYL 107
             G ++  KH +  W+    + G+  +    L +  L +V+R +    E LP  LK C +YL
Sbjct:   365 GGLLANKHTASEWKRVSENIGAQIVGKSCLDDNSLNSVYRILSLSYEDLPTDLKHCFLYL 424

Query:   108 CVFPPSIEISTRQLYQLWVAEGFIPYNGE---ETAEHYLKELIHRGFIKVSKRRARDTIK 164
               FP   +I TR LY  W AEG   Y+G    ++ E YL+EL+ R  +   K      +K
Sbjct:   425 AHFPEDYKIKTRTLYSYWAAEGI--YDGLTILDSGEDYLEELVRRNLVIAEKSNLSWRLK 482

Query:   165 SC 166
              C
Sbjct:   483 LC 484

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
 Identities = 23/64 (35%), Positives = 41/64 (64%)

Query:    95 ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFI-PYNG---EETAEHYLKELIHRG 150
             +LP+ LK C +Y  +FP +  +  ++L ++W+A+ F+ P  G   EE A+ YL EL++R 
Sbjct:   426 DLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRN 485

Query:   151 FIKV 154
              ++V
Sbjct:   486 MLQV 489

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
 Identities = 43/169 (25%), Positives = 77/169 (45%)

Query:    95 ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEG-FIP--YNGE---ETAEHYLKELIH 148
             ELP +LK C +YL  FP   EI    L   W AEG F P  Y+GE   +  + Y++EL+ 
Sbjct:   419 ELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVR 478

Query:   149 RGFIKVSKRRARDT-IKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKD 207
             R  + +S+R  + +  ++C++   +     L A++  F+ +      S AN++     + 
Sbjct:   479 RNMV-ISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITS-SRPSTANLQSTVTSRR 536

Query:   208 LIDFFSSLKHSDMYLQXXXXXXXXXXXXXXXDYE-NFFKRFKYLRVLNL 255
              +  + +  H +  +                +   + F R + LRVL+L
Sbjct:   537 FVYQYPTTLHVEKDINNPKLRALVVVTLGSWNLAGSSFTRLELLRVLDL 585

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
 Identities = 43/169 (25%), Positives = 77/169 (45%)

Query:    95 ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEG-FIP--YNGE---ETAEHYLKELIH 148
             ELP +LK C +YL  FP   EI    L   W AEG F P  Y+GE   +  + Y++EL+ 
Sbjct:   419 ELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVR 478

Query:   149 RGFIKVSKRRARDT-IKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKD 207
             R  + +S+R  + +  ++C++   +     L A++  F+ +      S AN++     + 
Sbjct:   479 RNMV-ISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITS-SRPSTANLQSTVTSRR 536

Query:   208 LIDFFSSLKHSDMYLQXXXXXXXXXXXXXXXDYE-NFFKRFKYLRVLNL 255
              +  + +  H +  +                +   + F R + LRVL+L
Sbjct:   537 FVYQYPTTLHVEKDINNPKLRALVVVTLGSWNLAGSSFTRLELLRVLDL 585

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 45/174 (25%), Positives = 78/174 (44%)

Query:    95 ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEG-FIP--YNGE---ETAEHYLKELIH 148
             ELP +LK C +YL  FP   EI    L   W AE  F P  Y+GE   +  + Y++EL+ 
Sbjct:   423 ELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEEIFQPRHYDGEIIRDVGDVYIEELVR 482

Query:   149 RGFIKVSKRRARDT-IKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKD 207
             R  + +S+R  + +  ++C++   +     L A++  F+ +      S AN +     + 
Sbjct:   483 RNMV-ISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITS-NPPSTANFQSTVTSRR 540

Query:   208 LIDFFSSLKHSDMYLQXXXXXXXXXXXXXXXDYE-NFFKRFKYLRVLNLGSAVL 260
             L+  + +  H +  +                +   + F R + LRVL+L  A L
Sbjct:   541 LVYQYPTTLHVEKDINNPKLRSLVVVTLGSWNMAGSSFTRLELLRVLDLVQAKL 594

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033834001 SubName- Full=Chromosome undetermined scaffold_70, whole genome shotgun sequence; (897 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	4e-07

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 39/176 (22%), Positives = 58/176 (32%), Gaps = 58/176 (32%)

Query: 6   WDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFF 65
           WD +    PD +NGSRV++T     +   +     +    +S+           ESW+ F
Sbjct: 115 WDKIGVPFPDGENGSRVIVTTRSESVAGRM-GGTSKPHEVESLE--------PEESWELF 165

Query: 66  ILHYG----------------------SMPLENYFLGEA-----FLTVWRQIYTVM---- 94
                                       +PL    LG        +  W  +   +    
Sbjct: 166 SNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNEL 225

Query: 95  ------------------ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIP 132
                              LP HLK C +YL +FP    I   QL +LW+AEGF+ 
Sbjct: 226 AGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVI 281

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.87
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.35
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.34
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.31
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.3
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.22
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.17
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.9
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.82
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.74
PLN03150	623	hypothetical protein; Provisional	98.73
PLN03150	623	hypothetical protein; Provisional	98.69
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.68
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.6
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.54
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.46
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.42
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.41
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.4
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.37
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.32
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.31
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.31
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.87
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.68
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.61
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.54
PRK15386	426	type III secretion protein GogB; Provisional	97.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.34
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.26
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.17
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.04
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.79
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.69
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.64
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.58
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.55
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.4
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.38
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.15
PRK04841	903	transcriptional regulator MalT; Provisional	95.65
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.38
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.1
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.97
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.64
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.46
smart00370	26	LRR Leucine-rich repeats, outliers.	93.46
smart00370	26	LRR Leucine-rich repeats, outliers.	93.15
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.15
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.15
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.93
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.63
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.44
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.88
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	84.21
PF05729	166	NACHT: NACHT domain	84.1
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.51

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-56  Score=453.49  Aligned_cols=332  Identities=24%  Similarity=0.382  Sum_probs=286.5

Q ss_pred             CChhhHHHHHhhcCCCCCCcEEEEEeCChHHHhh-cccccCCCCCCCceEEcCCCCCChhhhhhccc---ccc-------
Q 042413            1 MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLS-LEMENGEKIRPDSVLNGGPMIRLKHESWQFFI---LHY-------   69 (350)
Q Consensus         1 ~~~~~w~~l~~~l~~~~~GSrIivTTR~~~v~~~-~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~---f~~-------   69 (350)
                      |+..+|+.+..++|...+||||++|||++.||.. |++.        ..+++++|.  ++|||+||+   |..       
T Consensus       271 W~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~--------~~~~v~~L~--~~eaW~LF~~~v~~~~~~~~~~  340 (889)
T KOG4658|consen  271 WEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD--------YPIEVECLT--PEEAWDLFQKKVGPNTLGSHPD  340 (889)
T ss_pred             cccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC--------ccccccccC--ccccHHHHHHhhcccccccccc
Confidence            8899999999999999999999999999999998 7765        999999999  999999999   433       


Q ss_pred             ------------CCchhHHHHHHHHHH-----HHHHhhhc------------------------cCCCChhhHHHHhhhh
Q 042413           70 ------------GSMPLENYFLGEAFL-----TVWRQIYT------------------------VMELPFHLKVCCIYLC  108 (350)
Q Consensus        70 ------------~GlPLai~~lg~~L~-----~~W~~~l~------------------------y~~L~~~lk~cfl~~a  108 (350)
                                  +|+|||+++||++|+     ++|+++.+                        ||+||+++|.||+|||
T Consensus       341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLyca  420 (889)
T KOG4658|consen  341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCA  420 (889)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhc
Confidence                        999999999999999     88999887                        9999999999999999


Q ss_pred             cCCCCceeeHHHHHHHHHHcCCCCCC--C---hhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHhh--
Q 042413          109 VFPPSIEISTRQLYQLWVAEGFIPYN--G---EETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAE--  181 (350)
Q Consensus       109 ~Fp~~~~i~~~~li~~w~a~g~i~~~--~---e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~~--  181 (350)
                      +|||||.|++++||.+|+||||+.+.  +   ++.|+.|+++|+++++++.....  ++..+|+|||+|||+|..+++  
T Consensus       421 lFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~  498 (889)
T KOG4658|consen  421 LFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDF  498 (889)
T ss_pred             cCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccc
Confidence            99999999999999999999999885  3   99999999999999999987754  677899999999999999999  


Q ss_pred             ---hcCcEEecC-CCC----C-CCCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceee
Q 042413          182 ---KTGFVWMPD-MEE----E-SLANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLR  251 (350)
Q Consensus       182 ---~~~~~~~~~-~~~----~-~~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~  251 (350)
                         +++.+...+ ...    . ....+|++++.++.. ..+.....+  +++||.+.++...  .......+|..++.|+
T Consensus       499 ~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~--~L~tLll~~n~~~--l~~is~~ff~~m~~Lr  574 (889)
T KOG4658|consen  499 GKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENP--KLRTLLLQRNSDW--LLEISGEFFRSLPLLR  574 (889)
T ss_pred             cccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCC--ccceEEEeecchh--hhhcCHHHHhhCcceE
Confidence               666444432 111    1 457899999999998 677777888  9999999998620  2456677899999999


Q ss_pred             EEEccCCC-CCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCC-cCcccchhccccccCcEEEeeccCC
Q 042413          252 VLNLGSAV-LDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSS-YIDQSPHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       252 ~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~~~~  329 (350)
                      +|||++|. +.++|.+|+.|.|||||+++++.++.+|.++++|..|++||+..+ .+..+|..+..|++|++|.+.....
T Consensus       575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~  654 (889)
T KOG4658|consen  575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL  654 (889)
T ss_pred             EEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc
Confidence            99999887 889999999999999999999999999999999999999999999 6677777777799999999976542


Q ss_pred             CCCCCCccccccccccccc
Q 042413          330 CTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       330 ~~~~~~~~~l~~L~~L~~L  348 (350)
                      .........+.+|++|+.+
T Consensus       655 ~~~~~~l~el~~Le~L~~l  673 (889)
T KOG4658|consen  655 SNDKLLLKELENLEHLENL  673 (889)
T ss_pred             ccchhhHHhhhcccchhhh
Confidence            2222244455555555544

>PLN03210 Resistant to P

Probab=100.00  E-value=1.7e-36  Score=320.67  Aligned_cols=297  Identities=18%  Similarity=0.152  Sum_probs=225.1

Q ss_pred             CChhhHHHHHhhcCCCCCCcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc---ccc--------
Q 042413            1 MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI---LHY--------   69 (350)
Q Consensus         1 ~~~~~w~~l~~~l~~~~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~---f~~--------   69 (350)
                      |+.+.|+.+.......++|||||||||+++|+..+++.        .+|+++.|+  +++||+||+   |++        
T Consensus       306 ~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~--------~~~~v~~l~--~~ea~~LF~~~Af~~~~~~~~~~  375 (1153)
T PLN03210        306 DDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID--------HIYEVCLPS--NELALEMFCRSAFKKNSPPDGFM  375 (1153)
T ss_pred             CCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC--------eEEEecCCC--HHHHHHHHHHHhcCCCCCcHHHH
Confidence            67788999887766667899999999999999888776        899999999  999999999   754        


Q ss_pred             ----------CCchhHHHHHHHHHH----HHHHhhhc-----------------cCCCCh-hhHHHHhhhhcCCCCceee
Q 042413           70 ----------GSMPLENYFLGEAFL----TVWRQIYT-----------------VMELPF-HLKVCCIYLCVFPPSIEIS  117 (350)
Q Consensus        70 ----------~GlPLai~~lg~~L~----~~W~~~l~-----------------y~~L~~-~lk~cfl~~a~Fp~~~~i~  117 (350)
                                +|+|||++++|+.|+    .+|+.+++                 |++|++ ..|.||+||||||++..+ 
T Consensus       376 ~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~-  454 (1153)
T PLN03210        376 ELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV-  454 (1153)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH-
Confidence                      999999999999999    89998876                 999987 599999999999998754 


Q ss_pred             HHHHHHHHHHcCCCCCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHhhhcC-------cEEecC
Q 042413          118 TRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTG-------FVWMPD  190 (350)
Q Consensus       118 ~~~li~~w~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~~~~~-------~~~~~~  190 (350)
                        +.+..|.|.+....      +..++.|+++|||+...       ..++|||++|+||+++++++.       +....+
T Consensus       455 --~~v~~~l~~~~~~~------~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~  519 (1153)
T PLN03210        455 --NDIKLLLANSDLDV------NIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAK  519 (1153)
T ss_pred             --HHHHHHHHhcCCCc------hhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHH
Confidence              34777888765533      33488999999998743       358999999999999997753       111110


Q ss_pred             C------CCCCCCCeeEEEEecCccc---h--hhccCCCCCCeeEEEE-------------------------------e
Q 042413          191 M------EEESLANVKRCFILKDLID---F--FSSLKHSDMYLQSFLN-------------------------------H  228 (350)
Q Consensus       191 ~------~~~~~~~~r~L~l~~~~~~---~--~~~~~~~~~~Lr~L~~-------------------------------~  228 (350)
                      +      ......+++.+++......   +  .....+.  +|+.|.+                               .
T Consensus       520 di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~--~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~  597 (1153)
T PLN03210        520 DICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR--NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD  597 (1153)
T ss_pred             HHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCc--cccEEEEecccccccccceeecCcchhhcCcccEEEEec
Confidence            0      0012245566655433321   1  1112233  4444444                               3


Q ss_pred             cCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCC-CcccchhhhcCcCCCEEEccCC-cC
Q 042413          229 SSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPS-LKCLHSLLCTLLNLETLEMPSS-YI  306 (350)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~-l~~lP~~i~~l~~L~~L~l~~~-~l  306 (350)
                      ++..    . .+|..| .+.+|+.|++++|.++.+|..+..+++|++|+|+++. +..+|. ++.+++|++|++++| .+
T Consensus       598 ~~~l----~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L  670 (1153)
T PLN03210        598 KYPL----R-CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSL  670 (1153)
T ss_pred             CCCC----C-CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCc
Confidence            3332    1 122223 4578888999998888888888899999999999865 677874 888999999999999 88


Q ss_pred             cccchhccccccCcEEEeeccCCCCC
Q 042413          307 DQSPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       307 ~~lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      .++|.+++++++|+.|++++|.....
T Consensus       671 ~~lp~si~~L~~L~~L~L~~c~~L~~  696 (1153)
T PLN03210        671 VELPSSIQYLNKLEDLDMSRCENLEI  696 (1153)
T ss_pred             cccchhhhccCCCCEEeCCCCCCcCc
Confidence            99999999999999999988754443

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.87  E-value=2.1e-23  Score=189.89  Aligned_cols=124  Identities=29%  Similarity=0.548  Sum_probs=97.7

Q ss_pred             CChhhHHHHHhhcCCCCCCcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc---ccc--------
Q 042413            1 MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI---LHY--------   69 (350)
Q Consensus         1 ~~~~~w~~l~~~l~~~~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~---f~~--------   69 (350)
                      |+...|+.+...++....||+||||||++.|+..++...       ..|++++|+  ++||++||+   +..        
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~-------~~~~l~~L~--~~ea~~L~~~~~~~~~~~~~~~~  181 (287)
T PF00931_consen  111 WDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTD-------KVIELEPLS--EEEALELFKKRAGRKESESPEDL  181 (287)
T ss_dssp             -SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCE-------EEEECSS----HHHHHHHHHHHHTSHS----TTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-------ccccccccc--ccccccccccccccccccccccc
Confidence            677889999988888888999999999999998876522       889999999  999999999   211        


Q ss_pred             -----------CCchhHHHHHHHHHH-----HHHHhhhc-----------------------cCCCChhhHHHHhhhhcC
Q 042413           70 -----------GSMPLENYFLGEAFL-----TVWRQIYT-----------------------VMELPFHLKVCCIYLCVF  110 (350)
Q Consensus        70 -----------~GlPLai~~lg~~L~-----~~W~~~l~-----------------------y~~L~~~lk~cfl~~a~F  110 (350)
                                 +|+|||++++|++|+     .+|+.+++                       |+.||+++|+||+|||+|
T Consensus       182 ~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f  261 (287)
T PF00931_consen  182 EDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIF  261 (287)
T ss_dssp             CTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCC
Confidence                       999999999999996     67777664                       999999999999999999


Q ss_pred             CCCceeeHHHHHHHHHHcCCCCC
Q 042413          111 PPSIEISTRQLYQLWVAEGFIPY  133 (350)
Q Consensus       111 p~~~~i~~~~li~~w~a~g~i~~  133 (350)
                      |+++.|+++.|+++|+++|||..
T Consensus       262 ~~~~~i~~~~li~lW~~e~~i~~  284 (287)
T PF00931_consen  262 PEGVPIPRERLIRLWVAEGFISS  284 (287)
T ss_dssp             GTTS-EEHHHHHHHHTT-HHTC-
T ss_pred             CCCceECHHHHHHHHHHCCCCcc
Confidence            99999999999999999999976

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.35  E-value=1.9e-14  Score=116.27  Aligned_cols=136  Identities=20%  Similarity=0.180  Sum_probs=107.7

Q ss_pred             CeeEEEEecCcc-chhhcc-CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC--cCccccCCCCCC
Q 042413          198 NVKRCFILKDLI-DFFSSL-KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD--QYPSGLENLYLL  273 (350)
Q Consensus       198 ~~r~L~l~~~~~-~~~~~~-~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L  273 (350)
                      ++..|.+.++.+ +.|..+ .++  +||.|.+.-+..     ...|..|+.++.|++|||++|++.  .+|..+..+.-|
T Consensus        57 nlevln~~nnqie~lp~~issl~--klr~lnvgmnrl-----~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl  129 (264)
T KOG0617|consen   57 NLEVLNLSNNQIEELPTSISSLP--KLRILNVGMNRL-----NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL  129 (264)
T ss_pred             hhhhhhcccchhhhcChhhhhch--hhhheecchhhh-----hcCccccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence            344555555555 444433 444  777777765554     356778899999999999999877  789989889999


Q ss_pred             CeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccc
Q 042413          274 KYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLI  343 (350)
Q Consensus       274 ~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~  343 (350)
                      +-|.|++|.++-+|+.+++|++||.|.++.|.+-++|..++.|+.|+.|++.+|....   +|+.+++|.
T Consensus       130 ralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v---lppel~~l~  196 (264)
T KOG0617|consen  130 RALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV---LPPELANLD  196 (264)
T ss_pred             HHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee---cChhhhhhh
Confidence            9999999999999999999999999999999999999999999999999998885443   555665553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.34  E-value=5.5e-14  Score=133.46  Aligned_cols=146  Identities=18%  Similarity=0.181  Sum_probs=116.8

Q ss_pred             CCeeEEEEecCcc-c-hhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          197 ANVKRCFILKDLI-D-FFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~-~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      .++.||++.++.. . .-...+++  .||++++..+...  ..++ |..+..+..|.+||||.|++.++|..+..-+++-
T Consensus        55 qkLEHLs~~HN~L~~vhGELs~Lp--~LRsv~~R~N~LK--nsGi-P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~i  129 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLISVHGELSDLP--RLRSVIVRDNNLK--NSGI-PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSI  129 (1255)
T ss_pred             hhhhhhhhhhhhhHhhhhhhccch--hhHHHhhhccccc--cCCC-CchhcccccceeeecchhhhhhcchhhhhhcCcE
Confidence            4677888887776 2 23344666  9999999988875  2344 4556679999999999999999999999999999


Q ss_pred             eeeeeCCCCcccchhh-hcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccccC
Q 042413          275 YLKLNIPSLKCLHSLL-CTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALH  349 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~  349 (350)
                      .|+||+|+|..+|.++ -+|..|-.|||++|.+..+|+.+.+|..|+.|++++|...-.  ....++.+++|++||
T Consensus       130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf--QLrQLPsmtsL~vLh  203 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF--QLRQLPSMTSLSVLH  203 (1255)
T ss_pred             EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH--HHhcCccchhhhhhh
Confidence            9999999999999876 578899999999999999999999999999999998854332  344566677777665

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.31  E-value=3.1e-12  Score=135.27  Aligned_cols=128  Identities=20%  Similarity=0.213  Sum_probs=77.3

Q ss_pred             CCeeEEEEecCccc-hhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCCCCCCC
Q 042413          197 ANVKRCFILKDLID-FFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLENLYLLK  274 (350)
Q Consensus       197 ~~~r~L~l~~~~~~-~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~  274 (350)
                      .++|+|.+..+... ......++  +|++|.+.++..    ....+..+.++++|++|+|++|.+. .+|..++++++|+
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~~~l~--~L~~L~Ls~n~~----~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  191 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPRGSIP--NLETLDLSNNML----SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE  191 (968)
T ss_pred             CCCCEEECcCCccccccCccccC--CCCEEECcCCcc----cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence            45566666555441 11112233  666666666554    2334455666777777777777654 5666677777777


Q ss_pred             eeeeeCCCCc-ccchhhhcCcCCCEEEccCCcC-cccchhccccccCcEEEeeccCCC
Q 042413          275 YLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYI-DQSPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       275 ~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l-~~lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                      +|++++|.+. .+|..++++.+|++|++++|.+ ..+|..++++++|++|++++|...
T Consensus       192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence            7777776654 5666666677777777766633 356666666666666666666443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.30  E-value=4.6e-14  Score=114.02  Aligned_cols=144  Identities=17%  Similarity=0.223  Sum_probs=115.8

Q ss_pred             CCCeeEEEEecCcc--chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413          196 LANVKRCFILKDLI--DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL  273 (350)
Q Consensus       196 ~~~~r~L~l~~~~~--~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L  273 (350)
                      .+.+.+|.+.++..  ..|...+..  +|+.|.++.+.+.     .+|..++.++.||.|+++-|.+..+|..+|.++-|
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~--nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELK--NLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhh--hhhhhhcccchhh-----hcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence            46678888888887  233344566  8888888888763     35577888999999999988888899999999999


Q ss_pred             CeeeeeCCCCc--ccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccccC
Q 042413          274 KYLKLNIPSLK--CLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALH  349 (350)
Q Consensus       274 ~~L~l~~~~l~--~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~  349 (350)
                      ..|+|..|++.  .+|..+..+.-|+.|.+++|.+.-+|.++++|++|+.|.+.+|....   +|..++.|+.|+.||
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~---lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS---LPKEIGDLTRLRELH  179 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh---CcHHHHHHHHHHHHh
Confidence            99999998875  78888888888888889999899999999999999999998775443   677777777777765

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.22  E-value=1.6e-11  Score=129.76  Aligned_cols=106  Identities=25%  Similarity=0.220  Sum_probs=54.3

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCCCCCCCeeeeeCCCCc-ccchhhhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLENLYLLKYLKLNIPSLK-CLHSLLCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~l~-~lP~~i~~l~~L~~  298 (350)
                      +|++|.+.++..    ....+..+.++++|+.|+|++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++
T Consensus       189 ~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  264 (968)
T PLN00113        189 SLEFLTLASNQL----VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY  264 (968)
T ss_pred             CCCeeeccCCCC----cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence            444444444433    2233344555555555555555544 45555555555555555555543 45555555555555


Q ss_pred             EEccCCcC-cccchhccccccCcEEEeeccCCC
Q 042413          299 LEMPSSYI-DQSPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       299 L~l~~~~l-~~lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                      |++++|.+ ..+|..++++++|++|++++|...
T Consensus       265 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             EECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            55555532 345555555555555555555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.17  E-value=1e-12  Score=125.01  Aligned_cols=125  Identities=21%  Similarity=0.232  Sum_probs=102.6

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE  300 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~  300 (350)
                      .|.+|.+.+...   +...+|..+..+.+|+.+|||.|++..+|+.+-++.+|+.|+||+|.|+++.-.++.-.+|++|+
T Consensus       198 sL~vLhms~TqR---Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLN  274 (1255)
T KOG0444|consen  198 SLSVLHMSNTQR---TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLN  274 (1255)
T ss_pred             hhhhhhcccccc---hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhc
Confidence            334444444333   34456677888999999999999999999999999999999999999999988888889999999


Q ss_pred             ccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccccC
Q 042413          301 MPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALH  349 (350)
Q Consensus       301 l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~  349 (350)
                      ++.|.+..+|+.+++|++|+.|.+.+|... ...+|+++++|..|+++|
T Consensus       275 lSrNQLt~LP~avcKL~kL~kLy~n~NkL~-FeGiPSGIGKL~~Levf~  322 (1255)
T KOG0444|consen  275 LSRNQLTVLPDAVCKLTKLTKLYANNNKLT-FEGIPSGIGKLIQLEVFH  322 (1255)
T ss_pred             cccchhccchHHHhhhHHHHHHHhccCccc-ccCCccchhhhhhhHHHH
Confidence            999999999999999999999999887543 234788888888887765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.03  E-value=1.4e-11  Score=111.80  Aligned_cols=94  Identities=22%  Similarity=0.256  Sum_probs=72.0

Q ss_pred             ccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchh------------------------hhc
Q 042413          237 SKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSL------------------------LCT  292 (350)
Q Consensus       237 ~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~------------------------i~~  292 (350)
                      .+.++..++.+++|..|+|++|.+..+|...+.+..||.|+++.|++..+|+.                        +++
T Consensus       424 isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n  503 (565)
T KOG0472|consen  424 ISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN  503 (565)
T ss_pred             cccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence            44566778888889999999998889998899888899999998887777764                        445


Q ss_pred             CcCCCEEEccCCcCcccchhccccccCcEEEeeccCCC
Q 042413          293 LLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       293 l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                      +.+|.+||+.+|.+..+|+.+|++++|+||++++|.+.
T Consensus       504 m~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  504 MRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            66677777777777777777777777777777766543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.98  E-value=3.7e-10  Score=94.15  Aligned_cols=105  Identities=21%  Similarity=0.229  Sum_probs=33.2

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhc-CCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFK-RFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~  298 (350)
                      ++|.|.+.++.+..     + +.+. .+.+|++|+|++|.++.++ .+..+++|+.|++++|.|+.+++.+ ..+++|++
T Consensus        20 ~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   20 KLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccc-----c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            55666666666521     1 1222 3556677777777766654 4566677777777777777665544 34677777


Q ss_pred             EEccCCcCcccch--hccccccCcEEEeeccCCCCC
Q 042413          299 LEMPSSYIDQSPH--DIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       299 L~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |++++|.+.++-+  .+..+++|+.|++.+|..+..
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            7777775544432  455666677777776655544

>PLN03210 Resistant to P

Probab=98.90  E-value=5.4e-09  Score=112.03  Aligned_cols=125  Identities=23%  Similarity=0.172  Sum_probs=100.1

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC-CCcCccccCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV-LDQYPSGLENLYLL  273 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L  273 (350)
                      +.++|.|.+..+.. .+|......  +|+.|.+.++...     ..+..+..+++|+.|+|+++. +..+| .++.+++|
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~f~~~--~L~~L~L~~s~l~-----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~L  659 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSNFRPE--NLVKLQMQGSKLE-----KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNL  659 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCcCCcc--CCcEEECcCcccc-----ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcc
Confidence            46688888877665 556555556  9999998887653     233456788999999999876 67777 48889999


Q ss_pred             CeeeeeCCC-CcccchhhhcCcCCCEEEccCC-cCcccchhccccccCcEEEeeccCC
Q 042413          274 KYLKLNIPS-LKCLHSLLCTLLNLETLEMPSS-YIDQSPHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       274 ~~L~l~~~~-l~~lP~~i~~l~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~~~~  329 (350)
                      ++|++++|. +..+|.+++++.+|+.|++++| .++.+|..+ ++++|+.|++++|..
T Consensus       660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR  716 (1153)
T ss_pred             cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence            999999875 6799999999999999999998 899999876 788999999988754

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.88  E-value=5.3e-10  Score=101.73  Aligned_cols=85  Identities=24%  Similarity=0.268  Sum_probs=67.7

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-----------------------c-cCCCCCCCee
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-----------------------G-LENLYLLKYL  276 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-----------------------~-i~~l~~L~~L  276 (350)
                      ++..|.+..+..+     .+|..+..+..||.||++.|.|..+|+                       + +++|.+|..|
T Consensus       436 kLt~L~L~NN~Ln-----~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL  510 (565)
T KOG0472|consen  436 KLTFLDLSNNLLN-----DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL  510 (565)
T ss_pred             cceeeecccchhh-----hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence            6666666665543     455667777778888888876654443                       2 7788999999


Q ss_pred             eeeCCCCcccchhhhcCcCCCEEEccCCcCcccch
Q 042413          277 KLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPH  311 (350)
Q Consensus       277 ~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~  311 (350)
                      +|.+|.+..+|+.+|++.+|++|++.+|.+. .|.
T Consensus       511 DL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr  544 (565)
T KOG0472|consen  511 DLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPR  544 (565)
T ss_pred             ccCCCchhhCChhhccccceeEEEecCCccC-CCH
Confidence            9999999999999999999999999999887 554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.82  E-value=2.4e-09  Score=89.31  Aligned_cols=126  Identities=17%  Similarity=0.146  Sum_probs=56.2

Q ss_pred             CCCeeEEEEecCccchhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccC-CCCCCC
Q 042413          196 LANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLE-NLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~  274 (350)
                      +.+.|.|.+.++.+...+.....+.+|+.|.+..|....    +  +.+..++.|+.|++++|.++.+++.+. .+++|+
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~----l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK----L--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCCCCCcc----c--cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            346789999999984444443223399999999998842    2  356779999999999999998876553 689999


Q ss_pred             eeeeeCCCCcccc--hhhhcCcCCCEEEccCCcCcccch----hccccccCcEEEeecc
Q 042413          275 YLKLNIPSLKCLH--SLLCTLLNLETLEMPSSYIDQSPH----DIWMMQKLMHLYFYCI  327 (350)
Q Consensus       275 ~L~l~~~~l~~lP--~~i~~l~~L~~L~l~~~~l~~lP~----~i~~L~~L~~L~l~~~  327 (350)
                      .|++++|+|..+-  ..+..+++|++|++.+|.+..-+.    -+..+++|+.||....
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            9999999987553  456789999999999998877765    6788999999988653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.81  E-value=4.5e-09  Score=99.88  Aligned_cols=145  Identities=17%  Similarity=0.117  Sum_probs=103.0

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLK  274 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~  274 (350)
                      .+++.+++..+.. .+|...... .++..|.+..|.+    ..+-...+..++.||+||||.|.|.++| .++..=.+++
T Consensus       102 ~nLq~v~l~~N~Lt~IP~f~~~s-ghl~~L~L~~N~I----~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen  102 PNLQEVNLNKNELTRIPRFGHES-GHLEKLDLRHNLI----SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK  176 (873)
T ss_pred             Ccceeeeeccchhhhcccccccc-cceeEEeeecccc----ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence            3455555555554 444433222 2688888887776    4556677888899999999999998887 4556667899


Q ss_pred             eeeeeCCCCcccc-hhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCCC-CCccccccccccc
Q 042413          275 YLKLNIPSLKCLH-SLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTSK-NYSSSLKNLIFIS  346 (350)
Q Consensus       275 ~L~l~~~~l~~lP-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~  346 (350)
                      +|+|++|.|+.+- ..+..|.+|.+|.|+.|.+..+|. .|.+|++|+.|++..|.+.... --+.+|..|++|+
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk  251 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK  251 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence            9999999998763 456788899999999999999987 5666999999999877543321 1344455555443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.76  E-value=1.2e-09  Score=108.50  Aligned_cols=125  Identities=17%  Similarity=0.195  Sum_probs=97.2

Q ss_pred             CCeeEEEEecCcc---chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413          197 ANVKRCFILKDLI---DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL  273 (350)
Q Consensus       197 ~~~r~L~l~~~~~---~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L  273 (350)
                      ..+.-|.+.+|..   -+|....+.  +||.|.+..|..    ..++...+.++..|+.|+||||.++.+|..+..+..|
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~--hLKVLhLsyNrL----~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFK--HLKVLHLSYNRL----NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRL  432 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhcccc--ceeeeeeccccc----ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhh
Confidence            4445555555554   355566777  999999988876    4567778888999999999999999999989999999


Q ss_pred             CeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcc--cchhccccccCcEEEeeccCC
Q 042413          274 KYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQ--SPHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       274 ~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~~~~  329 (350)
                      ++|...+|.+..+| .+..++.|+++|++.|.+..  +|...-. ++|++||+++|..
T Consensus       433 ~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  433 HTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             HHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            99999889899898 68889999999999885544  4443332 7899999988853

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.74  E-value=7.9e-09  Score=106.35  Aligned_cols=129  Identities=22%  Similarity=0.170  Sum_probs=96.2

Q ss_pred             chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC--CCcCcc-ccCCCCCCCeeeeeCCC-Ccc
Q 042413          210 DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV--LDQYPS-GLENLYLLKYLKLNIPS-LKC  285 (350)
Q Consensus       210 ~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--l~~lp~-~i~~l~~L~~L~l~~~~-l~~  285 (350)
                      +.+......  ..|...+.++....     . ..-...+.|+.|-+.+|.  +..++. .+..++.|++|||++|. +.+
T Consensus       515 ~~~~~~~~~--~~rr~s~~~~~~~~-----~-~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~  586 (889)
T KOG4658|consen  515 EIPQVKSWN--SVRRMSLMNNKIEH-----I-AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK  586 (889)
T ss_pred             ccccccchh--heeEEEEeccchhh-----c-cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence            445555555  88888888877632     1 112234468888888886  666664 47789999999999875 789


Q ss_pred             cchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413          286 LHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       286 lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L  348 (350)
                      ||++|+.|-+|++|+++++.+..+|.++++|++|.+|++..+......  +..+..|++|++|
T Consensus       587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVL  647 (889)
T ss_pred             CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc--cchhhhcccccEE
Confidence            999999999999999999999999999999999999999877544442  2223335555443

>PLN03150 hypothetical protein; Provisional

Probab=98.73  E-value=2.8e-08  Score=99.79  Aligned_cols=103  Identities=16%  Similarity=0.173  Sum_probs=69.3

Q ss_pred             eeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCCCCCCCeeeeeCCCCc-ccchhhhcCcCCCEE
Q 042413          222 LQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLENLYLLKYLKLNIPSLK-CLHSLLCTLLNLETL  299 (350)
Q Consensus       222 Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L  299 (350)
                      ++.|.+.++..    ...++..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|+.+++|++|++|
T Consensus       420 v~~L~L~~n~L----~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQGL----RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEECCCCCc----cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            55555555554    3445566777777777777777776 67777777777777777777776 677777777777777


Q ss_pred             EccCC-cCcccchhcccc-ccCcEEEeeccC
Q 042413          300 EMPSS-YIDQSPHDIWMM-QKLMHLYFYCIS  328 (350)
Q Consensus       300 ~l~~~-~l~~lP~~i~~L-~~L~~L~l~~~~  328 (350)
                      +|++| ..+.+|..++.+ .++..+++.+|.
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEecCCc
Confidence            77777 344677766653 355666666653

>PLN03150 hypothetical protein; Provisional

Probab=98.69  E-value=2.8e-08  Score=99.80  Aligned_cols=84  Identities=19%  Similarity=0.249  Sum_probs=77.0

Q ss_pred             eeeEEEccCCCCC-cCccccCCCCCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcC-cccchhccccccCcEEEee
Q 042413          249 YLRVLNLGSAVLD-QYPSGLENLYLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYI-DQSPHDIWMMQKLMHLYFY  325 (350)
Q Consensus       249 ~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l-~~lP~~i~~L~~L~~L~l~  325 (350)
                      .++.|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+ +.+|+.++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4889999999988 88999999999999999999997 8999999999999999999955 5899999999999999999


Q ss_pred             ccCCCCC
Q 042413          326 CISPCTS  332 (350)
Q Consensus       326 ~~~~~~~  332 (350)
                      +|...+.
T Consensus       499 ~N~l~g~  505 (623)
T PLN03150        499 GNSLSGR  505 (623)
T ss_pred             CCccccc
Confidence            9876654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.68  E-value=3.2e-09  Score=93.36  Aligned_cols=128  Identities=20%  Similarity=0.159  Sum_probs=97.6

Q ss_pred             CCeeEEEEecCcc-chhhcc-CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFSSL-KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~-~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      ..+..+.+.+|.+ .+-.+. -.+  .+|.|+++.|.+.    .+  ..+..+++|..||||+|.++++-..-.+|-+.+
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~P--kir~L~lS~N~i~----~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAP--KLRRLILSQNRIR----TV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIK  355 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhcc--ceeEEecccccee----ee--hhhhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence            3445556666665 233333 234  8999999888862    12  347788899999999998887766556777889


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccch--hccccccCcEEEeeccCCCCCC
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPH--DIWMMQKLMHLYFYCISPCTSK  333 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~  333 (350)
                      .|.|++|.|+.+ +.+++|++|..||+++|++.++..  +||+|+.|+++.+.+|.....+
T Consensus       356 tL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  356 TLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             eeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            999999988888 568999999999999998888765  8999999999999988765543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.66  E-value=1.1e-08  Score=97.33  Aligned_cols=128  Identities=16%  Similarity=0.134  Sum_probs=85.7

Q ss_pred             CCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCC
Q 042413          197 ANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYL  272 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~  272 (350)
                      .++.+|.+..+.+ .+.  ....+.  +|-+|.+..|..    ...++..|++++.|+.|+|..|.|..+ --.+.+|.+
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~ln--sL~tlkLsrNri----ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S  246 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLN--SLLTLKLSRNRI----TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS  246 (873)
T ss_pred             CCceEEeeccccccccccccccccc--hheeeecccCcc----cccCHHHhhhcchhhhhhccccceeeehhhhhcCchh
Confidence            5688889888887 222  223444  788888888886    567778888899999999988887744 345666777


Q ss_pred             CCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCC
Q 042413          273 LKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       273 L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~  330 (350)
                      |+.|.|..|+|..|-.. +..|.++++|+|..|++..+-+ ++..|++|++|+++.|.+.
T Consensus       247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~  306 (873)
T KOG4194|consen  247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ  306 (873)
T ss_pred             hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence            77777777777666543 2455666666666665555543 4555666666666655443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=2.8e-08  Score=68.12  Aligned_cols=56  Identities=27%  Similarity=0.395  Sum_probs=27.7

Q ss_pred             eeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCC
Q 042413          249 YLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSS  304 (350)
Q Consensus       249 ~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~  304 (350)
                      +|++|++++|.++.+| ..+..+++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            3455555555555444 234445555555555555554433 3345555555555544

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.60  E-value=6.8e-08  Score=98.06  Aligned_cols=116  Identities=15%  Similarity=0.173  Sum_probs=66.6

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      +..++.|.+.++.+ .++... ..  +|++|.+.+|...    .++ ..+  .+.|+.|+|++|.+..+|..+.  .+|+
T Consensus       198 p~~L~~L~Ls~N~LtsLP~~l-~~--nL~~L~Ls~N~Lt----sLP-~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~  265 (754)
T PRK15370        198 PEQITTLILDNNELKSLPENL-QG--NIKTLYANSNQLT----SIP-ATL--PDTIQEMELSINRITELPERLP--SALQ  265 (754)
T ss_pred             ccCCcEEEecCCCCCcCChhh-cc--CCCEEECCCCccc----cCC-hhh--hccccEEECcCCccCcCChhHh--CCCC
Confidence            45677777777766 333322 24  7777777766552    222 222  1356677777777766666554  3567


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeecc
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~  327 (350)
                      +|++++|++..+|..+.  .+|+.|++++|.+..+|..+.  ++|++|++++|
T Consensus       266 ~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N  314 (754)
T PRK15370        266 SLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN  314 (754)
T ss_pred             EEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC
Confidence            77777777766666553  367777777776666665432  23444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.57  E-value=4.3e-08  Score=67.17  Aligned_cols=58  Identities=22%  Similarity=0.212  Sum_probs=52.4

Q ss_pred             CCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccC
Q 042413          271 YLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCIS  328 (350)
Q Consensus       271 ~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~  328 (350)
                      ++|++|++++|+++.+|+ .+..+++|++|++++|.+..+|+ .|..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            479999999999999985 56889999999999999999976 78999999999998874

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.56  E-value=4.9e-08  Score=98.78  Aligned_cols=79  Identities=16%  Similarity=0.081  Sum_probs=64.7

Q ss_pred             ceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeecc
Q 042413          248 KYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       248 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~  327 (350)
                      ..|+.|++++|.++.+|...   .+|+.|++++|.++.+|...   .+|+.|++++|.+..+|.+++++++|+.|++++|
T Consensus       382 ~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             cccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCCcch---hhhhhhhhccCcccccChHHhhccCCCeEECCCC
Confidence            46788888888888777543   56888899999888888643   4678899999999999999999999999999999


Q ss_pred             CCCCC
Q 042413          328 SPCTS  332 (350)
Q Consensus       328 ~~~~~  332 (350)
                      ...+.
T Consensus       456 ~Ls~~  460 (788)
T PRK15387        456 PLSER  460 (788)
T ss_pred             CCCch
Confidence            77654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.54  E-value=2.5e-07  Score=94.01  Aligned_cols=120  Identities=18%  Similarity=0.136  Sum_probs=92.9

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY  275 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~  275 (350)
                      .+...+.+..... .+|... .+  +++.|.+.+|.+    ..++...+   ++|+.|++++|.++.+|..+.  .+|+.
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I-p~--~L~~L~Ls~N~L----tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~  245 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI-PE--QITTLILDNNEL----KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQE  245 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc-cc--CCcEEEecCCCC----CcCChhhc---cCCCEEECCCCccccCChhhh--ccccE
Confidence            3455677766555 444332 24  899999999876    33433332   589999999999999998765  47999


Q ss_pred             eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413          276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |+|++|.+..+|..+.  .+|+.|++++|.+..+|..+.  .+|++|++++|.....
T Consensus       246 L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~L  298 (754)
T PRK15370        246 MELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTL  298 (754)
T ss_pred             EECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccC
Confidence            9999999999998875  589999999999999998775  4899999999876654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.46  E-value=1.4e-08  Score=96.22  Aligned_cols=125  Identities=19%  Similarity=0.182  Sum_probs=101.0

Q ss_pred             eeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeee
Q 042413          199 VKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLK  277 (350)
Q Consensus       199 ~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~  277 (350)
                      +..+.+..+.. ..|.....-  -|+.|++..+...     ..+..++....|..||.+.|.+..+|..++.|..|+.|+
T Consensus       123 lt~l~ls~NqlS~lp~~lC~l--pLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  123 LTFLDLSSNQLSHLPDGLCDL--PLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN  195 (722)
T ss_pred             HHHhhhccchhhcCChhhhcC--cceeEEEecCccc-----cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence            44445555555 344444444  6888988888763     355666788899999999999999999999999999999


Q ss_pred             eeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCC
Q 042413          278 LNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       278 l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~  331 (350)
                      ++.|.+..+|+.++.| .|..||++.|++..+|-.|.+|+.|++|.|.+|....
T Consensus       196 vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  196 VRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            9999999999999855 5899999999999999999999999999999885543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.46  E-value=2.8e-08  Score=99.09  Aligned_cols=90  Identities=19%  Similarity=0.249  Sum_probs=57.3

Q ss_pred             HhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEE
Q 042413          243 FFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHL  322 (350)
Q Consensus       243 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L  322 (350)
                      +..+.-+|++||+++|.+..+|..|..+.+|+.|+++.|.|.+.|.+++++.+|++|+|.+|.+..+|.++..+++|+.|
T Consensus        40 ~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L  119 (1081)
T KOG0618|consen   40 FVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL  119 (1081)
T ss_pred             HhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence            33333346666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             EeeccCCCCC
Q 042413          323 YFYCISPCTS  332 (350)
Q Consensus       323 ~l~~~~~~~~  332 (350)
                      +++.|.....
T Consensus       120 dlS~N~f~~~  129 (1081)
T KOG0618|consen  120 DLSFNHFGPI  129 (1081)
T ss_pred             ccchhccCCC
Confidence            6666654443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.42  E-value=6.1e-07  Score=90.98  Aligned_cols=59  Identities=20%  Similarity=0.133  Sum_probs=29.1

Q ss_pred             eeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhc-----------------CcCCCEEEccCCcCcccch
Q 042413          250 LRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCT-----------------LLNLETLEMPSSYIDQSPH  311 (350)
Q Consensus       250 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~-----------------l~~L~~L~l~~~~l~~lP~  311 (350)
                      |+.|++++|.++.+|..   +++|++|++++|.++.+|.....                 ..+|++|++++|++..+|.
T Consensus       284 L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~  359 (788)
T PRK15387        284 LCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT  359 (788)
T ss_pred             cCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCC
Confidence            44445555555444432   24455555555555544431111                 1256666666666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.41  E-value=3.3e-07  Score=58.06  Aligned_cols=39  Identities=31%  Similarity=0.314  Sum_probs=22.3

Q ss_pred             CCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccc
Q 042413          272 LLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSP  310 (350)
Q Consensus       272 ~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP  310 (350)
                      +|++|++++|+|+.+|+.+++|++|++|++++|.+.++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            456666666666666655666666666666666555543

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.40  E-value=4.8e-08  Score=86.09  Aligned_cols=119  Identities=18%  Similarity=0.101  Sum_probs=75.0

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE  300 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~  300 (350)
                      .|..+.+++|.+.     .+..+..-.+.+|+|++|.|++..+-. +..|.+|+.|+|++|.+.++-.+=-+|-|.++|.
T Consensus       285 ~LtelDLS~N~I~-----~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-----QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhccccccchh-----hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            4445555555442     334455556777777777777665433 6667777777777777666654445667777777


Q ss_pred             ccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          301 MPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       301 l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      |++|.+..+ +++++|-+|..||+++|.+.... -..++++|..|++
T Consensus       359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ld-eV~~IG~LPCLE~  403 (490)
T KOG1259|consen  359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELD-EVNHIGNLPCLET  403 (490)
T ss_pred             hhhhhHhhh-hhhHhhhhheeccccccchhhHH-HhcccccccHHHH
Confidence            777766666 46788888899999888655432 2233444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.37  E-value=5.1e-08  Score=92.55  Aligned_cols=122  Identities=16%  Similarity=0.148  Sum_probs=77.7

Q ss_pred             eeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeee
Q 042413          199 VKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLK  277 (350)
Q Consensus       199 ~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~  277 (350)
                      ++.+.+.+++. ..|..+. -+..|.-|.+..|...     ..+.-+.++..||.|++..|.+..+|+.++.|+ |..||
T Consensus       145 Lkvli~sNNkl~~lp~~ig-~~~tl~~ld~s~nei~-----slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lD  217 (722)
T KOG0532|consen  145 LKVLIVSNNKLTSLPEEIG-LLPTLAHLDVSKNEIQ-----SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLD  217 (722)
T ss_pred             ceeEEEecCccccCCcccc-cchhHHHhhhhhhhhh-----hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeee
Confidence            45555566655 3444333 2226666666666542     344566777777777777777777777777554 77777


Q ss_pred             eeCCCCcccchhhhcCcCCCEEEccCCcCcccchhcccccc---CcEEEeecc
Q 042413          278 LNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQK---LMHLYFYCI  327 (350)
Q Consensus       278 l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~---L~~L~l~~~  327 (350)
                      ++.|++..||-.+.+|++||+|-|.+|.+++-|..|+...+   .++|+..-|
T Consensus       218 fScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  218 FSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             cccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            77777777777777777777777777777777765543333   344444433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.34  E-value=5.1e-07  Score=83.08  Aligned_cols=109  Identities=19%  Similarity=0.246  Sum_probs=58.6

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchhh
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSLL  290 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~i  290 (350)
                      +|+.|.+.++.............+..++.|+.|++++|.+.     .++..+..+.+|++|++++|.+.     .++..+
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~  217 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL  217 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence            66666666666521001122334555566777777776655     23334444556777777766654     233445


Q ss_pred             hcCcCCCEEEccCCcCccc-chhcc-----ccccCcEEEeeccCC
Q 042413          291 CTLLNLETLEMPSSYIDQS-PHDIW-----MMQKLMHLYFYCISP  329 (350)
Q Consensus       291 ~~l~~L~~L~l~~~~l~~l-P~~i~-----~L~~L~~L~l~~~~~  329 (350)
                      ..+++|++|++++|.+... +..+.     ..++|++|++++|..
T Consensus       218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence            5566677777777654431 11111     135677777766644

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.32  E-value=4.6e-07  Score=57.39  Aligned_cols=41  Identities=27%  Similarity=0.353  Sum_probs=35.8

Q ss_pred             ceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccch
Q 042413          248 KYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHS  288 (350)
Q Consensus       248 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~  288 (350)
                      ++|++|++++|.++.+|..+++|++|++|++++|.++.+|.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            46899999999999999889999999999999999998764

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.31  E-value=9.5e-08  Score=87.08  Aligned_cols=123  Identities=20%  Similarity=0.144  Sum_probs=97.0

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeC-CCCcccchh-hhcCcCCC
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNI-PSLKCLHSL-LCTLLNLE  297 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~-~~l~~lP~~-i~~l~~L~  297 (350)
                      ....+.+..|.+    ..+++..|+.++.||.||||.|.|+.+ |+.+..|.+|..|-+.+ |+|+.+|.. ++.|..||
T Consensus        68 ~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   68 ETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             cceEEEeccCCc----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            566677778876    678889999999999999999999954 78899999998888777 889999975 48899999


Q ss_pred             EEEccCCcCcccch-hccccccCcEEEeeccCCCCCCCCcccccccccccccC
Q 042413          298 TLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISALH  349 (350)
Q Consensus       298 ~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~  349 (350)
                      .|.+.-|.+.-++. .+..|++|..|.+.+|......  -..+..+..++++|
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~--~~tf~~l~~i~tlh  194 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC--KGTFQGLAAIKTLH  194 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc--cccccchhccchHh
Confidence            99998887776654 7888999999999887554442  12455555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.31  E-value=3.4e-07  Score=84.32  Aligned_cols=132  Identities=18%  Similarity=0.103  Sum_probs=95.7

Q ss_pred             CCeeEEEEecCccc--hh----hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCC-ceeeEEEccCCCCC-----cCc
Q 042413          197 ANVKRCFILKDLID--FF----SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRF-KYLRVLNLGSAVLD-----QYP  264 (350)
Q Consensus       197 ~~~r~L~l~~~~~~--~~----~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~l~-----~lp  264 (350)
                      .+++++.+.++...  .+    .....+  +|+.|.+.++.............+..+ ++|+.|++++|.++     .++
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~--~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSS--SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccC--cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            47888988877652  11    111113  699999998876311112333456677 89999999999987     445


Q ss_pred             cccCCCCCCCeeeeeCCCCc-----ccchhhhcCcCCCEEEccCCcCc-----ccchhccccccCcEEEeeccCCC
Q 042413          265 SGLENLYLLKYLKLNIPSLK-----CLHSLLCTLLNLETLEMPSSYID-----QSPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       265 ~~i~~l~~L~~L~l~~~~l~-----~lP~~i~~l~~L~~L~l~~~~l~-----~lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                      ..+..+.+|++|++++|.+.     .++..+..+++|+.|++++|.+.     .++..+..+++|++|++++|...
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            56777889999999999886     35556667789999999999664     34556778899999999998654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.21  E-value=6.1e-07  Score=85.41  Aligned_cols=79  Identities=32%  Similarity=0.413  Sum_probs=42.8

Q ss_pred             eeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeecc
Q 042413          249 YLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       249 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~  327 (350)
                      +|+.|++++|.+..+|..++.+++|+.|++++|++..+|...+.+.+|+.|++++|.+..+|..+..+..|..|.+++|
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence            5555555555555555555555555555555555555555544555555555555555555554444444555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.20  E-value=7.3e-07  Score=84.88  Aligned_cols=86  Identities=26%  Similarity=0.288  Sum_probs=41.8

Q ss_pred             CCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEee
Q 042413          246 RFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFY  325 (350)
Q Consensus       246 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~  325 (350)
                      ..+.|+.|++++|.+..+|..+..+.+|..|.+++|.+...|..+.++.++..|.+.+|.+..+|..++.+++++.|+++
T Consensus       184 ~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         184 NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS  263 (394)
T ss_pred             hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence            34444444444444444444443444444444444443344444444445555554444444445555666666666666


Q ss_pred             ccCCCC
Q 042413          326 CISPCT  331 (350)
Q Consensus       326 ~~~~~~  331 (350)
                      +|....
T Consensus       264 ~n~i~~  269 (394)
T COG4886         264 NNQISS  269 (394)
T ss_pred             cccccc
Confidence            554433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=7e-07  Score=82.47  Aligned_cols=129  Identities=20%  Similarity=0.113  Sum_probs=79.0

Q ss_pred             CeeEEEEecCccchhhcc--CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC-CCcCccccCCCCCCC
Q 042413          198 NVKRCFILKDLIDFFSSL--KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV-LDQYPSGLENLYLLK  274 (350)
Q Consensus       198 ~~r~L~l~~~~~~~~~~~--~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L~  274 (350)
                      .++.|.+..|....+...  ...+++++.|.+.+|..   ++.........++.|.+|+|.+|. +..--.+..-+..|+
T Consensus       173 ~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl---s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  173 SLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL---SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             cchhcccccccccCCccccchhhhhhhheEEeccCCC---CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            445555555554222211  11123778888887777   366666677778888888888874 221112223355677


Q ss_pred             eeeeeCCCCcccc--hhhhcCcCCCEEEccCCcCccc--chh-----ccccccCcEEEeeccCC
Q 042413          275 YLKLNIPSLKCLH--SLLCTLLNLETLEMPSSYIDQS--PHD-----IWMMQKLMHLYFYCISP  329 (350)
Q Consensus       275 ~L~l~~~~l~~lP--~~i~~l~~L~~L~l~~~~l~~l--P~~-----i~~L~~L~~L~l~~~~~  329 (350)
                      .|+|++|.+..+|  .-++.++.|..|+++.|.+.++  |+.     ...+++|++|++..|.+
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            8888887776555  4567778888888877755543  332     34566788888877765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.12  E-value=2e-06  Score=86.64  Aligned_cols=130  Identities=15%  Similarity=0.179  Sum_probs=96.9

Q ss_pred             CCeeEEEEecCcc---chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413          197 ANVKRCFILKDLI---DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL  273 (350)
Q Consensus       197 ~~~r~L~l~~~~~---~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L  273 (350)
                      .++++|.+.+...   ..+...+..+|.||+|.+.+-...   .......+.++++|+.||+|+++++.+ ..++.|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence            5677888877554   333444434559999999987763   334557788999999999999999988 789999999


Q ss_pred             CeeeeeCCCCcccc--hhhhcCcCCCEEEccCCcCcccch-------hccccccCcEEEeeccCCC
Q 042413          274 KYLKLNIPSLKCLH--SLLCTLLNLETLEMPSSYIDQSPH-------DIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       274 ~~L~l~~~~l~~lP--~~i~~l~~L~~L~l~~~~l~~lP~-------~i~~L~~L~~L~l~~~~~~  330 (350)
                      +.|.+.+=.+..-+  ..+.+|++|++||+|......-|.       .-..|++||.||.+++...
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            99999987666432  457899999999999873333332       1124889999999886543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.05  E-value=1.1e-06  Score=69.00  Aligned_cols=88  Identities=20%  Similarity=0.264  Sum_probs=58.8

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE  300 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~  300 (350)
                      +|.+..+.+|..    ...++.+...++.++.|+|++|.+..+|..+..++.||.|+++.|.+...|.-+..|.+|-.|+
T Consensus        54 el~~i~ls~N~f----k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   54 ELTKISLSDNGF----KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             eEEEEecccchh----hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            666666666665    4455555555666677777777777777666677777777777777777776666677777777


Q ss_pred             ccCCcCcccchh
Q 042413          301 MPSSYIDQSPHD  312 (350)
Q Consensus       301 l~~~~l~~lP~~  312 (350)
                      ..+|...++|-+
T Consensus       130 s~~na~~eid~d  141 (177)
T KOG4579|consen  130 SPENARAEIDVD  141 (177)
T ss_pred             CCCCccccCcHH
Confidence            666666666654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=3.6e-06  Score=77.91  Aligned_cols=128  Identities=18%  Similarity=0.097  Sum_probs=79.1

Q ss_pred             CCeeEEEEecCccchhh----ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc--cCCC
Q 042413          197 ANVKRCFILKDLIDFFS----SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG--LENL  270 (350)
Q Consensus       197 ~~~r~L~l~~~~~~~~~----~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~--i~~l  270 (350)
                      +++|.+++.+.....+.    ...++  ++|.|.++.+-+.  .+.....+...+++|+.|+|+.|.+....++  -..+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~--~v~~LdLS~NL~~--nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILP--NVRDLDLSRNLFH--NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCC--cceeecchhhhHH--hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            56777777777763222    34566  8888888887764  2555556777888888888888876633222  2256


Q ss_pred             CCCCeeeeeCCCCc--ccchhhhc------------------------CcCCCEEEccCCcCcccc--hhccccccCcEE
Q 042413          271 YLLKYLKLNIPSLK--CLHSLLCT------------------------LLNLETLEMPSSYIDQSP--HDIWMMQKLMHL  322 (350)
Q Consensus       271 ~~L~~L~l~~~~l~--~lP~~i~~------------------------l~~L~~L~l~~~~l~~lP--~~i~~L~~L~~L  322 (350)
                      .+|+.|.|+.|+++  .+-...-.                        ++.|+.|||++|++..+|  ..++.++.|..|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            78888888887765  22111122                        334666666666555555  345566666666


Q ss_pred             EeeccC
Q 042413          323 YFYCIS  328 (350)
Q Consensus       323 ~l~~~~  328 (350)
                      .++.+.
T Consensus       277 nls~tg  282 (505)
T KOG3207|consen  277 NLSSTG  282 (505)
T ss_pred             hccccC
Confidence            665553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.87  E-value=1.2e-06  Score=80.04  Aligned_cols=95  Identities=16%  Similarity=0.166  Sum_probs=75.1

Q ss_pred             eeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccC-CcCcccch-hccccccCcEEEe
Q 042413          249 YLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPS-SYIDQSPH-DIWMMQKLMHLYF  324 (350)
Q Consensus       249 ~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~-~~l~~lP~-~i~~L~~L~~L~l  324 (350)
                      .-..++|..|+|+.+| ..++.+++||.|+|++|.|+.+ |..+..|.+|-.|-+-+ |+|+++|. .|+.|.+|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            3467899999999998 5778899999999999999977 77888899987777766 69999998 6889999999998


Q ss_pred             eccCCCCCC-CCcccccccc
Q 042413          325 YCISPCTSK-NYSSSLKNLI  343 (350)
Q Consensus       325 ~~~~~~~~~-~~~~~l~~L~  343 (350)
                      .-|...-.. +.+..+++|.
T Consensus       148 Nan~i~Cir~~al~dL~~l~  167 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLS  167 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcc
Confidence            776543332 2334444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.84  E-value=2.7e-06  Score=66.87  Aligned_cols=87  Identities=15%  Similarity=0.103  Sum_probs=69.0

Q ss_pred             HhcCCceeeEEEccCCCCCcCccccCCC-CCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcE
Q 042413          243 FFKRFKYLRVLNLGSAVLDQYPSGLENL-YLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMH  321 (350)
Q Consensus       243 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l-~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~  321 (350)
                      .+.....|...+|++|.++++|+.+... +-++.|++++|.|+.+|.++..++.|+.|+++.|.+...|.-|..|.+|-.
T Consensus        48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM  127 (177)
T ss_pred             HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence            3455566777888888888888777653 478888888888888888888888888888888888888888888888888


Q ss_pred             EEeeccCC
Q 042413          322 LYFYCISP  329 (350)
Q Consensus       322 L~l~~~~~  329 (350)
                      |+..++..
T Consensus       128 Lds~~na~  135 (177)
T KOG4579|consen  128 LDSPENAR  135 (177)
T ss_pred             hcCCCCcc
Confidence            88876643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.80  E-value=3.2e-05  Score=72.61  Aligned_cols=113  Identities=15%  Similarity=0.108  Sum_probs=75.4

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCC-CCCcCccccCCCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSA-VLDQYPSGLENLYLLK  274 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~  274 (350)
                      ...++|.+..+.. .+|   ..+ ++|++|.+.++..    ....+..+  .++|+.|++++| .+..+|.+      |+
T Consensus        52 ~~l~~L~Is~c~L~sLP---~LP-~sLtsL~Lsnc~n----LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le  115 (426)
T PRK15386         52 RASGRLYIKDCDIESLP---VLP-NELTEITIENCNN----LTTLPGSI--PEGLEKLTVCHCPEISGLPES------VR  115 (426)
T ss_pred             cCCCEEEeCCCCCcccC---CCC-CCCcEEEccCCCC----cccCCchh--hhhhhheEccCcccccccccc------cc
Confidence            3467888887755 444   222 2799998877554    22333333  257899999998 57788865      55


Q ss_pred             eeeeeCCC---CcccchhhhcCc------------------CCCEEEccCCcCcccchhccccccCcEEEeecc
Q 042413          275 YLKLNIPS---LKCLHSLLCTLL------------------NLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       275 ~L~l~~~~---l~~lP~~i~~l~------------------~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~  327 (350)
                      .|+++++.   +..+|+++..|.                  +|++|++++|....+|..+.  .+|++|+++.+
T Consensus       116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            56666643   567888776653                  68889998886555665544  47888888764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.68  E-value=1.4e-06  Score=85.18  Aligned_cols=85  Identities=20%  Similarity=0.179  Sum_probs=49.1

Q ss_pred             HHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcE
Q 042413          242 NFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMH  321 (350)
Q Consensus       242 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~  321 (350)
                      ..+.-++.|+.|||+.|.++++- .+..|.+|+.|||+.|.+..+|.--..=.+|+.|++++|.++++ .++.+|.+|++
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~  258 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYG  258 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhhhhc
Confidence            44455566666666666666553 55566666666666666665554111112366666666655555 34666666666


Q ss_pred             EEeeccC
Q 042413          322 LYFYCIS  328 (350)
Q Consensus       322 L~l~~~~  328 (350)
                      ||++.|-
T Consensus       259 LDlsyNl  265 (1096)
T KOG1859|consen  259 LDLSYNL  265 (1096)
T ss_pred             cchhHhh
Confidence            6666653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.62  E-value=3.3e-06  Score=82.69  Aligned_cols=104  Identities=20%  Similarity=0.299  Sum_probs=83.9

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCCCCeeeeeCCCCcccchhhhcCcCCCEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYLLKYLKLNIPSLKCLHSLLCTLLNLETL  299 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L  299 (350)
                      .+++|++..|...      --+.+..++.|+.|||++|.+..+|.- ...++ |..|.+++|.+++| ..|.+|.+|+.|
T Consensus       188 ale~LnLshNk~~------~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~L  259 (1096)
T KOG1859|consen  188 ALESLNLSHNKFT------KVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGL  259 (1096)
T ss_pred             Hhhhhccchhhhh------hhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhcc
Confidence            8999999998873      224788999999999999999988842 23344 99999999999988 568999999999


Q ss_pred             EccCCcCcccch--hccccccCcEEEeeccCCCCC
Q 042413          300 EMPSSYIDQSPH--DIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       300 ~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |+++|.+....+  -++.|..|+.|.+.+|..+-.
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            999995443322  477888999999999876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.61  E-value=2.8e-05  Score=78.56  Aligned_cols=108  Identities=19%  Similarity=0.131  Sum_probs=83.5

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC--cCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD--QYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~  298 (350)
                      +|+.|.+.+...-  ....+...-..+|.|+.|.+++-.+.  ++-.-..++++|+.||+|+++++.+ ..|++|+|||+
T Consensus       123 nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  123 NLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             hhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            8899988875542  23334455566899999999987754  4444456789999999999999999 88999999999


Q ss_pred             EEccCCcCcccch--hccccccCcEEEeeccCCCC
Q 042413          299 LEMPSSYIDQSPH--DIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       299 L~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~  331 (350)
                      |.+++-.+..-+.  .+.+|++|++||+|......
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND  234 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence            9987766555443  78899999999998864433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.54  E-value=2.9e-05  Score=74.44  Aligned_cols=103  Identities=24%  Similarity=0.230  Sum_probs=71.4

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE  300 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~  300 (350)
                      ++..+.+.++.+..     +...+..+++|++|++++|.|+.+. .+..+..|+.|++++|.|..++. +..+.+|+.++
T Consensus        96 ~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~  168 (414)
T KOG0531|consen   96 SLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKLLD  168 (414)
T ss_pred             ceeeeeccccchhh-----cccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence            77777777776631     1122566788888888888877664 45666778888888888776643 45577888888


Q ss_pred             ccCCcCcccchh-ccccccCcEEEeeccCCC
Q 042413          301 MPSSYIDQSPHD-IWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       301 l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~  330 (350)
                      +++|.+..++.. ...+.+|+.+++.+|...
T Consensus       169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  169 LSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             CCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            888877776654 467777888888776543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.42  E-value=0.00021  Score=67.24  Aligned_cols=79  Identities=14%  Similarity=0.101  Sum_probs=45.8

Q ss_pred             CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC-CCcCccccCCCCCCCeeeeeCC-CCcccchhhhcC
Q 042413          216 KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV-LDQYPSGLENLYLLKYLKLNIP-SLKCLHSLLCTL  293 (350)
Q Consensus       216 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~-~l~~lP~~i~~l  293 (350)
                      .+.  +++.|.+..+..    ..+ |.   -..+|+.|.++++. ++.+|..+.  .+|++|++++| .+..+|++    
T Consensus        50 ~~~--~l~~L~Is~c~L----~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s----  113 (426)
T PRK15386         50 EAR--ASGRLYIKDCDI----ESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES----  113 (426)
T ss_pred             Hhc--CCCEEEeCCCCC----ccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc----
Confidence            445  777777776644    112 11   12347777777654 666666553  46777777776 56667654    


Q ss_pred             cCCCEEEccCC---cCcccchh
Q 042413          294 LNLETLEMPSS---YIDQSPHD  312 (350)
Q Consensus       294 ~~L~~L~l~~~---~l~~lP~~  312 (350)
                        |+.|+++++   .+..+|.+
T Consensus       114 --Le~L~L~~n~~~~L~~LPss  133 (426)
T PRK15386        114 --VRSLEIKGSATDSIKNVPNG  133 (426)
T ss_pred             --cceEEeCCCCCcccccCcch
Confidence              444555444   35566654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.34  E-value=0.00021  Score=60.03  Aligned_cols=85  Identities=21%  Similarity=0.237  Sum_probs=42.7

Q ss_pred             HHhcCCceeeEEEccCCCCCcCccccCC-CCCCCeeeeeCCCCcccch--hhhcCcCCCEEEccCCcCcccch----hcc
Q 042413          242 NFFKRFKYLRVLNLGSAVLDQYPSGLEN-LYLLKYLKLNIPSLKCLHS--LLCTLLNLETLEMPSSYIDQSPH----DIW  314 (350)
Q Consensus       242 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~-l~~L~~L~l~~~~l~~lP~--~i~~l~~L~~L~l~~~~l~~lP~----~i~  314 (350)
                      +.|..++.|..|.|++|.|+.+-..++. +++|..|.|.+|+|.++-+  -+..++.|++|.+-+|.+..-+.    -+.
T Consensus        58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~  137 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY  137 (233)
T ss_pred             ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence            3445555555555555555554444443 3445555555555543311  13344555555555554444432    345


Q ss_pred             ccccCcEEEeec
Q 042413          315 MMQKLMHLYFYC  326 (350)
Q Consensus       315 ~L~~L~~L~l~~  326 (350)
                      ++++|+.||+.+
T Consensus       138 klp~l~~LDF~k  149 (233)
T KOG1644|consen  138 KLPSLRTLDFQK  149 (233)
T ss_pred             ecCcceEeehhh
Confidence            555555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.26  E-value=0.00021  Score=64.63  Aligned_cols=133  Identities=15%  Similarity=0.066  Sum_probs=96.9

Q ss_pred             CCCCeeEEEEecCcc-chh-----h-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-----c
Q 042413          195 SLANVKRCFILKDLI-DFF-----S-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----Q  262 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~-----~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~  262 (350)
                      .+.++|.+....|.. +.+     . ....+  .|..+.+..+.+...........|..+++|++|||..|.++     .
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~--~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~  232 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHP--TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA  232 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhcc--ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence            467788888888776 111     1 12335  88888888887753223356677899999999999999987     3


Q ss_pred             CccccCCCCCCCeeeeeCCCCcc-----cchhh-hcCcCCCEEEccCCcCcc-----cchhccccccCcEEEeeccCC
Q 042413          263 YPSGLENLYLLKYLKLNIPSLKC-----LHSLL-CTLLNLETLEMPSSYIDQ-----SPHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       263 lp~~i~~l~~L~~L~l~~~~l~~-----lP~~i-~~l~~L~~L~l~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~  329 (350)
                      +...+..+++|+.|++++|.++.     +-..+ ...++|++|.+.+|.++.     +-..+...+.|+.|++++|..
T Consensus       233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            55667788899999999997752     22223 347899999999996542     334567788999999999876

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.17  E-value=0.00012  Score=70.21  Aligned_cols=89  Identities=21%  Similarity=0.237  Sum_probs=76.3

Q ss_pred             HHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcE
Q 042413          242 NFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMH  321 (350)
Q Consensus       242 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~  321 (350)
                      ..+..++.|..|++.+|.++.+...+..+.+|++|++++|.|+.+. .+..+..|+.|++++|.+..++ ++..+.+|+.
T Consensus        89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~  166 (414)
T KOG0531|consen   89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKL  166 (414)
T ss_pred             cccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhc
Confidence            3467889999999999999988766889999999999999999884 4788889999999999888875 4666899999


Q ss_pred             EEeeccCCCCC
Q 042413          322 LYFYCISPCTS  332 (350)
Q Consensus       322 L~l~~~~~~~~  332 (350)
                      +++++|.....
T Consensus       167 l~l~~n~i~~i  177 (414)
T KOG0531|consen  167 LDLSYNRIVDI  177 (414)
T ss_pred             ccCCcchhhhh
Confidence            99988865544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.04  E-value=0.00092  Score=56.25  Aligned_cols=85  Identities=24%  Similarity=0.173  Sum_probs=68.2

Q ss_pred             ceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhc-CcCCCEEEccCCcCcccch--hccccccCcEEEe
Q 042413          248 KYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCT-LLNLETLEMPSSYIDQSPH--DIWMMQKLMHLYF  324 (350)
Q Consensus       248 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~-l~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l  324 (350)
                      .....+||+.|.+..++ .+..+..|.+|.+++|+|+.+-+.+.. +++|++|.+.+|++.++-+  .+..+++|++|.+
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            45678999999987664 477889999999999999999777755 5679999999997777644  4667889999999


Q ss_pred             eccCCCCCC
Q 042413          325 YCISPCTSK  333 (350)
Q Consensus       325 ~~~~~~~~~  333 (350)
                      -+|..+...
T Consensus       121 l~Npv~~k~  129 (233)
T KOG1644|consen  121 LGNPVEHKK  129 (233)
T ss_pred             cCCchhccc
Confidence            888665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.79  E-value=0.0005  Score=59.99  Aligned_cols=84  Identities=21%  Similarity=0.181  Sum_probs=50.0

Q ss_pred             HHhcCCceeeEEEccCC--CCC-cCccccCCCCCCCeeeeeCCCCc---ccchhhhcCcCCCEEEccCCcCcccch----
Q 042413          242 NFFKRFKYLRVLNLGSA--VLD-QYPSGLENLYLLKYLKLNIPSLK---CLHSLLCTLLNLETLEMPSSYIDQSPH----  311 (350)
Q Consensus       242 ~~~~~l~~L~~L~L~~~--~l~-~lp~~i~~l~~L~~L~l~~~~l~---~lP~~i~~l~~L~~L~l~~~~l~~lP~----  311 (350)
                      ..|..+++|+.|.++.|  .+. .++-....+++|++|++++|+|.   .+++ +..+.+|..|++.+|....+-.    
T Consensus        59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~  137 (260)
T KOG2739|consen   59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREK  137 (260)
T ss_pred             ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCccccccHHHH
Confidence            34556677777777777  333 44444445577777777777655   2322 4566677777777774444422    


Q ss_pred             hccccccCcEEEeec
Q 042413          312 DIWMMQKLMHLYFYC  326 (350)
Q Consensus       312 ~i~~L~~L~~L~l~~  326 (350)
                      .+.-+++|++|+-..
T Consensus       138 vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  138 VFLLLPSLKYLDGCD  152 (260)
T ss_pred             HHHHhhhhccccccc
Confidence            345566777766644

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.69  E-value=0.00078  Score=58.78  Aligned_cols=39  Identities=31%  Similarity=0.279  Sum_probs=17.9

Q ss_pred             CCceeeEEEccCCCCCcC--ccccCCCCCCCeeeeeCCCCc
Q 042413          246 RFKYLRVLNLGSAVLDQY--PSGLENLYLLKYLKLNIPSLK  284 (350)
Q Consensus       246 ~l~~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~l~~~~l~  284 (350)
                      .+++|++|+|++|.+..+  -.....+.+|..|++.+|...
T Consensus        89 ~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   89 KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            345555555555554421  112233444555555555433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.64  E-value=0.00072  Score=35.76  Aligned_cols=17  Identities=35%  Similarity=0.469  Sum_probs=6.9

Q ss_pred             CCeeeeeCCCCcccchh
Q 042413          273 LKYLKLNIPSLKCLHSL  289 (350)
Q Consensus       273 L~~L~l~~~~l~~lP~~  289 (350)
                      |++|++++|.++.+|++
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            33444444444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.00053  Score=60.97  Aligned_cols=87  Identities=21%  Similarity=0.151  Sum_probs=65.6

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcccc-CCCCCCCeeeeeCCCCc--ccchhhhcCcCCC
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGL-ENLYLLKYLKLNIPSLK--CLHSLLCTLLNLE  297 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~~~l~--~lP~~i~~l~~L~  297 (350)
                      +++-+.+.+|.+.  -|+.+...+.+++.|++|+|+.|++.....+. -.+++|+.|-|.++.+.  ..-..+..++.++
T Consensus        72 ~v~elDL~~N~iS--dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   72 DVKELDLTGNLIS--DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhcccchhc--cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            8888888888875  36777788889999999999999877443444 36778999999888764  5566677788888


Q ss_pred             EEEccCCcCccc
Q 042413          298 TLEMPSSYIDQS  309 (350)
Q Consensus       298 ~L~l~~~~l~~l  309 (350)
                      .|.++.|++..+
T Consensus       150 elHmS~N~~rq~  161 (418)
T KOG2982|consen  150 ELHMSDNSLRQL  161 (418)
T ss_pred             hhhhccchhhhh
Confidence            888888754433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.001  Score=59.19  Aligned_cols=35  Identities=34%  Similarity=0.366  Sum_probs=14.7

Q ss_pred             CceeeEEEccCCCCC--cCccccCCCCCCCeeeeeCC
Q 042413          247 FKYLRVLNLGSAVLD--QYPSGLENLYLLKYLKLNIP  281 (350)
Q Consensus       247 l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~  281 (350)
                      .++|++|-|.+..+.  ..-..+..++.++.|.++.|
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            344555555544433  22233333444444444444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.55  E-value=0.00096  Score=35.26  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=17.9

Q ss_pred             CCCEEEccCCcCcccchhcccc
Q 042413          295 NLETLEMPSSYIDQSPHDIWMM  316 (350)
Q Consensus       295 ~L~~L~l~~~~l~~lP~~i~~L  316 (350)
                      +|++||+++|.++.+|++|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5889999999888999887654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.00015  Score=63.72  Aligned_cols=96  Identities=18%  Similarity=0.187  Sum_probs=54.7

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccch--hhhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHS--LLCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~--~i~~l~~L~~  298 (350)
                      +++.|++.++..+      --....+|+.|+||.||-|.|+.+. .+..+++|+.|.|+.|.|..+-+  -+.+|++|++
T Consensus        20 ~vkKLNcwg~~L~------DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD------DISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HhhhhcccCCCcc------HHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            5566666666552      1144566777777777777766553 35566667777777766665533  2356666666


Q ss_pred             EEccCC-cCcccch-----hccccccCcEEE
Q 042413          299 LEMPSS-YIDQSPH-----DIWMMQKLMHLY  323 (350)
Q Consensus       299 L~l~~~-~l~~lP~-----~i~~L~~L~~L~  323 (350)
                      |.|..| ..+.-+.     -+.-|++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            666666 3333332     233455555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.41  E-value=0.0034  Score=57.03  Aligned_cols=111  Identities=14%  Similarity=0.138  Sum_probs=84.8

Q ss_pred             CCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchh
Q 042413          220 MYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSL  289 (350)
Q Consensus       220 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~  289 (350)
                      +.||+++...|.........+...|...+.|..+.++.|.|.     -+-..+..++||+.|+|++|-++     .+-..
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            399999999988754445566678888999999999999865     23456778999999999999775     34556


Q ss_pred             hhcCcCCCEEEccCCcCccc-----chhc-cccccCcEEEeeccCCC
Q 042413          290 LCTLLNLETLEMPSSYIDQS-----PHDI-WMMQKLMHLYFYCISPC  330 (350)
Q Consensus       290 i~~l~~L~~L~l~~~~l~~l-----P~~i-~~L~~L~~L~l~~~~~~  330 (350)
                      ++.+++|+.|++++|.+..=     -..+ ...++|+.|.+.+|.+.
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            67888999999999965432     2222 23678999999888543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.00043  Score=61.57  Aligned_cols=126  Identities=18%  Similarity=0.137  Sum_probs=76.3

Q ss_pred             CCeeEEEEecCccc---hhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC--cC---ccccC
Q 042413          197 ANVKRCFILKDLID---FFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD--QY---PSGLE  268 (350)
Q Consensus       197 ~~~r~L~l~~~~~~---~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~l---p~~i~  268 (350)
                      .+++.+++.+...+   .....+..  +|+.+.+..+..-  +.....-.+.+++.|..|+|++|.+.  .+   -..|+
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAkN~--~L~~lnlsm~sG~--t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAKNS--NLVRLNLSMCSGF--TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhccc--cceeecccccccc--chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            45667777776652   12233555  8888888777652  23445567888999999999988744  11   12222


Q ss_pred             CCCCCCeeeeeCCC--C--cccchhhhcCcCCCEEEccCC-cCcc-cchhccccccCcEEEeeccC
Q 042413          269 NLYLLKYLKLNIPS--L--KCLHSLLCTLLNLETLEMPSS-YIDQ-SPHDIWMMQKLMHLYFYCIS  328 (350)
Q Consensus       269 ~l~~L~~L~l~~~~--l--~~lP~~i~~l~~L~~L~l~~~-~l~~-lP~~i~~L~~L~~L~l~~~~  328 (350)
                        ..|..|+++++.  +  ..+.--..++++|..|||++| .++. +-..|.+++-|+||.++.|.
T Consensus       286 --e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  286 --ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             --hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence              356667777752  1  223222356777777787777 4432 22356667777777776663

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.00031  Score=61.90  Aligned_cols=82  Identities=21%  Similarity=0.232  Sum_probs=48.2

Q ss_pred             CceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccch--hccccccCcEEEe
Q 042413          247 FKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPH--DIWMMQKLMHLYF  324 (350)
Q Consensus       247 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l  324 (350)
                      +.+.+.|+.-||.++.+. -+.+++.|..|.|+-|+|+.|- .+..+++|+.|.|+.|.|..+-+  -+.+|++|+.|.+
T Consensus        18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            444555666666665442 2335666667777766666663 35566667777776665555543  4556666666666


Q ss_pred             eccCCC
Q 042413          325 YCISPC  330 (350)
Q Consensus       325 ~~~~~~  330 (350)
                      ..|.-|
T Consensus        96 ~ENPCc  101 (388)
T KOG2123|consen   96 DENPCC  101 (388)
T ss_pred             ccCCcc
Confidence            665433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.15  E-value=0.00016  Score=62.05  Aligned_cols=87  Identities=17%  Similarity=0.014  Sum_probs=69.6

Q ss_pred             HHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcE
Q 042413          242 NFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMH  321 (350)
Q Consensus       242 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~  321 (350)
                      ..+..++...+||++.|.+..+-..++.+..|.-|+++.|.+..+|...+.+..+..+++..|.....|.++++++.+++
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence            34556677788888888877777777778888888888888888888888888888888888888888888888888888


Q ss_pred             EEeeccC
Q 042413          322 LYFYCIS  328 (350)
Q Consensus       322 L~l~~~~  328 (350)
                      +++-++.
T Consensus       116 ~e~k~~~  122 (326)
T KOG0473|consen  116 NEQKKTE  122 (326)
T ss_pred             hhhccCc
Confidence            8876653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.65  E-value=0.1  Score=55.32  Aligned_cols=149  Identities=15%  Similarity=0.149  Sum_probs=97.2

Q ss_pred             HHHhhcCCCCCCcEEEEEeCChHHH--hhcccccCCCCCCCceEEcC----CCCCChhhhhhccc--ccc----------
Q 042413            8 NLEQVLPDNQNGSRVLITVTDPELL--LSLEMENGEKIRPDSVLNGG----PMIRLKHESWQFFI--LHY----------   69 (350)
Q Consensus         8 ~l~~~l~~~~~GSrIivTTR~~~v~--~~~~~~~~~~~~~~~~~~l~----~L~~~~~~s~~Lf~--f~~----------   69 (350)
                      .+...++....+-++|||||...-.  ......       +...++.    +++  .+|+-++|.  .+.          
T Consensus       141 ~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~-------~~~~~l~~~~l~f~--~~e~~~ll~~~~~~~~~~~~~~~l  211 (903)
T PRK04841        141 AMRFFLRHQPENLTLVVLSRNLPPLGIANLRVR-------DQLLEIGSQQLAFD--HQEAQQFFDQRLSSPIEAAESSRL  211 (903)
T ss_pred             HHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhc-------CcceecCHHhCCCC--HHHHHHHHHhccCCCCCHHHHHHH
Confidence            3444444445677898999984211  111111       1456666    899  999999997  442          


Q ss_pred             ----CCchhHHHHHHHHHH-HHH-------H-------hhhc------cCCCChhhHHHHhhhhcCCCCceeeHHHHHHH
Q 042413           70 ----GSMPLENYFLGEAFL-TVW-------R-------QIYT------VMELPFHLKVCCIYLCVFPPSIEISTRQLYQL  124 (350)
Q Consensus        70 ----~GlPLai~~lg~~L~-~~W-------~-------~~l~------y~~L~~~lk~cfl~~a~Fp~~~~i~~~~li~~  124 (350)
                          +|.|+++..++..+. ..|       .       .+-+      ++.||+..+..++..|+++   .|+.+ +...
T Consensus       212 ~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~~  287 (903)
T PRK04841        212 CDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIVR  287 (903)
T ss_pred             HHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHHH
Confidence                999999998887765 111       1       1111      7999999999999999986   33322 2221


Q ss_pred             HHHcCCCCCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHh
Q 042413          125 WVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVA  180 (350)
Q Consensus       125 w~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~  180 (350)
                      -.        |.+.+...+++|...+++...... .+  ..|+.|++++++.+...
T Consensus       288 l~--------~~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        288 VT--------GEENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC  332 (903)
T ss_pred             Hc--------CCCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence            11        134467889999999997543211 11  35888999999998765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.38  E-value=0.011  Score=29.07  Aligned_cols=16  Identities=31%  Similarity=0.607  Sum_probs=5.6

Q ss_pred             CCCEEEccCCcCcccc
Q 042413          295 NLETLEMPSSYIDQSP  310 (350)
Q Consensus       295 ~L~~L~l~~~~l~~lP  310 (350)
                      +|++|++++|.++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3444444444444443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.10  E-value=0.013  Score=28.74  Aligned_cols=16  Identities=31%  Similarity=0.301  Sum_probs=6.7

Q ss_pred             CCCeeeeeCCCCcccc
Q 042413          272 LLKYLKLNIPSLKCLH  287 (350)
Q Consensus       272 ~L~~L~l~~~~l~~lP  287 (350)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555554

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.97  E-value=0.0012  Score=58.90  Aligned_cols=204  Identities=13%  Similarity=0.024  Sum_probs=118.9

Q ss_pred             cCCCChh-hHHHHhhhhcCCCCceeeHHHHHHHHHHcCCCCC-----C-C-hhHHHHHHHHHHHcCcceeeecCCCCCee
Q 042413           93 VMELPFH-LKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPY-----N-G-EETAEHYLKELIHRGFIKVSKRRARDTIK  164 (350)
Q Consensus        93 y~~L~~~-lk~cfl~~a~Fp~~~~i~~~~li~~w~a~g~i~~-----~-~-e~~~~~~~~~Lv~r~li~~~~~~~~g~~~  164 (350)
                      |+.||++ +-.+|   ++.|+.......-+.++|-..|--..     + + ..+-...+..|+.|+.+-.          
T Consensus        98 ~~slpDEill~IF---s~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~----------  164 (419)
T KOG2120|consen   98 WDSLPDEILLGIF---SCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVF----------  164 (419)
T ss_pred             cccCCHHHHHHHH---HhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEE----------
Confidence            6788887 55555   44455544555556666665542211     1 1 4444455666777665532          


Q ss_pred             EEEeCHHHHHHHHHHhhhcCcEEecCCCCCCCCCeeEEEEecCccchhh----ccCCCCCCeeEEEEecCCCCCCCccch
Q 042413          165 SCYVPSFIYTSLALVAEKTGFVWMPDMEEESLANVKRCFILKDLIDFFS----SLKHSDMYLQSFLNHSSKNNHLNSKDY  240 (350)
Q Consensus       165 ~~~mhdli~dl~~~i~~~~~~~~~~~~~~~~~~~~r~L~l~~~~~~~~~----~~~~~~~~Lr~L~~~~~~~~~~~~~~~  240 (350)
                        +.       |+....++.+....   .....+++++.+....+....    ...+.  +|+.|.+.+....    ...
T Consensus       165 --Rl-------ar~~~~~prlae~~---~~frsRlq~lDLS~s~it~stl~~iLs~C~--kLk~lSlEg~~Ld----D~I  226 (419)
T KOG2120|consen  165 --RL-------ARSFMDQPRLAEHF---SPFRSRLQHLDLSNSVITVSTLHGILSQCS--KLKNLSLEGLRLD----DPI  226 (419)
T ss_pred             --Ec-------chhhhcCchhhhhh---hhhhhhhHHhhcchhheeHHHHHHHHHHHH--hhhhccccccccC----cHH
Confidence              11       11111121111100   002245777777776662221    22456  8888888888763    344


Q ss_pred             HHHhcCCceeeEEEccCCC-CCcC--ccccCCCCCCCeeeeeCCCCc-c----cchhhhcCcCCCEEEccCC--cCc--c
Q 042413          241 ENFFKRFKYLRVLNLGSAV-LDQY--PSGLENLYLLKYLKLNIPSLK-C----LHSLLCTLLNLETLEMPSS--YID--Q  308 (350)
Q Consensus       241 ~~~~~~l~~L~~L~L~~~~-l~~l--p~~i~~l~~L~~L~l~~~~l~-~----lP~~i~~l~~L~~L~l~~~--~l~--~  308 (350)
                      -..+.+-.+|+.|+|+.++ +++.  ---+.+++.|..|+++.|.+. +    +-..|+  .+|..|++++|  ++.  .
T Consensus       227 ~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh  304 (419)
T KOG2120|consen  227 VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSH  304 (419)
T ss_pred             HHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhH
Confidence            4567778899999999887 7633  233567888999999998653 2    122233  46888999998  332  2


Q ss_pred             cchhccccccCcEEEeeccCC
Q 042413          309 SPHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       309 lP~~i~~L~~L~~L~l~~~~~  329 (350)
                      +..-..+.++|.+||+++|..
T Consensus       305 ~~tL~~rcp~l~~LDLSD~v~  325 (419)
T KOG2120|consen  305 LSTLVRRCPNLVHLDLSDSVM  325 (419)
T ss_pred             HHHHHHhCCceeeeccccccc
Confidence            323345788999999998743

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.64  E-value=0.0019  Score=55.59  Aligned_cols=83  Identities=17%  Similarity=0.124  Sum_probs=66.9

Q ss_pred             CCcCc-cccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCccc
Q 042413          260 LDQYP-SGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSS  338 (350)
Q Consensus       260 l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~  338 (350)
                      ++++| ..|.....-+.||++.|++..+-..++.++.|..|+++.|.+.-+|.+++++..++++++.+|.....   |.+
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~---p~s  106 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ---PKS  106 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC---Ccc
Confidence            44555 56777888999999999998888889999999999999999999999999999999999987754443   444


Q ss_pred             ccccccc
Q 042413          339 LKNLIFI  345 (350)
Q Consensus       339 l~~L~~L  345 (350)
                      .+++..+
T Consensus       107 ~~k~~~~  113 (326)
T KOG0473|consen  107 QKKEPHP  113 (326)
T ss_pred             ccccCCc
Confidence            4444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.46  E-value=0.071  Score=29.12  Aligned_cols=19  Identities=21%  Similarity=0.419  Sum_probs=10.2

Q ss_pred             cCCCEEEccCCcCcccchh
Q 042413          294 LNLETLEMPSSYIDQSPHD  312 (350)
Q Consensus       294 ~~L~~L~l~~~~l~~lP~~  312 (350)
                      .+|++|+|++|.+..+|.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4455555555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.46  E-value=0.071  Score=29.12  Aligned_cols=19  Identities=21%  Similarity=0.419  Sum_probs=10.2

Q ss_pred             cCCCEEEccCCcCcccchh
Q 042413          294 LNLETLEMPSSYIDQSPHD  312 (350)
Q Consensus       294 ~~L~~L~l~~~~l~~lP~~  312 (350)
                      .+|++|+|++|.+..+|.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4455555555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.15  E-value=0.067  Score=29.24  Aligned_cols=21  Identities=29%  Similarity=0.156  Sum_probs=15.6

Q ss_pred             CCCCCeeeeeCCCCcccchhh
Q 042413          270 LYLLKYLKLNIPSLKCLHSLL  290 (350)
Q Consensus       270 l~~L~~L~l~~~~l~~lP~~i  290 (350)
                      |++|++|+|++|.++.+|+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            456788888888888887764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.15  E-value=0.067  Score=29.24  Aligned_cols=21  Identities=29%  Similarity=0.156  Sum_probs=15.6

Q ss_pred             CCCCCeeeeeCCCCcccchhh
Q 042413          270 LYLLKYLKLNIPSLKCLHSLL  290 (350)
Q Consensus       270 l~~L~~L~l~~~~l~~lP~~i  290 (350)
                      |++|++|+|++|.++.+|+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            456788888888888887764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.15  E-value=0.38  Score=37.47  Aligned_cols=97  Identities=20%  Similarity=0.206  Sum_probs=50.8

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~  298 (350)
                      +|+.+.+.. ..    ..+....|.+++.|+.+.+..+ +..++ ..+..+..|+.+.+.+ .+..++... ..+.+|+.
T Consensus        13 ~l~~i~~~~-~~----~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   13 NLESITFPN-TI----KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             T--EEEETS-T------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCEEEECC-Ce----eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            677776653 22    3455567777877888888764 66555 3455666788888865 555565443 45788888


Q ss_pred             EEccCCcCcccch-hccccccCcEEEeec
Q 042413          299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYC  326 (350)
Q Consensus       299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~  326 (350)
                      +++..+ +..++. .+.+. +|+.+.+..
T Consensus        86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            888654 555655 44444 777777654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.93  E-value=0.11  Score=46.00  Aligned_cols=39  Identities=13%  Similarity=0.098  Sum_probs=17.0

Q ss_pred             CCCCCCeeeeeCCCCc-ccchhh----hcCcCCCEEEccCCcCc
Q 042413          269 NLYLLKYLKLNIPSLK-CLHSLL----CTLLNLETLEMPSSYID  307 (350)
Q Consensus       269 ~l~~L~~L~l~~~~l~-~lP~~i----~~l~~L~~L~l~~~~l~  307 (350)
                      ++++|+..+||+|.+. +.|+.+    .+-..|..|.+++|.++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            3444555555555443 333322    23344555555544443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.63  E-value=0.46  Score=42.32  Aligned_cols=48  Identities=17%  Similarity=0.043  Sum_probs=28.3

Q ss_pred             hhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC
Q 042413          212 FSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD  261 (350)
Q Consensus       212 ~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~  261 (350)
                      +...+++  ++++..+++|.+.......+.+.+++...|..|.|++|.+-
T Consensus        86 ~aLlkcp--~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          86 KALLKCP--RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HHHhcCC--cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            3345566  77777777666643333344455666666666666666543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.44  E-value=0.39  Score=37.36  Aligned_cols=85  Identities=13%  Similarity=0.152  Sum_probs=52.2

Q ss_pred             hHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hcccc
Q 042413          240 YENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMM  316 (350)
Q Consensus       240 ~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L  316 (350)
                      ....|.++++|+.+.+.. .++.++ ..+..+.+|+.+.+.++ +..++.. +..+.+|+.+.+.. .+..++. .+...
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            345678888999999875 566665 45677889999999875 7777654 46677899999976 5555655 45568


Q ss_pred             ccCcEEEeecc
Q 042413          317 QKLMHLYFYCI  327 (350)
Q Consensus       317 ~~L~~L~l~~~  327 (350)
                      ++|+.+.+..+
T Consensus        81 ~~l~~i~~~~~   91 (129)
T PF13306_consen   81 TNLKNIDIPSN   91 (129)
T ss_dssp             TTECEEEETTT
T ss_pred             ccccccccCcc
Confidence            89999999653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.88  E-value=0.21  Score=42.39  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=18.0

Q ss_pred             CcCCCEEEccCC-cCcccc-hhccccccCcEEEeec
Q 042413          293 LLNLETLEMPSS-YIDQSP-HDIWMMQKLMHLYFYC  326 (350)
Q Consensus       293 l~~L~~L~l~~~-~l~~lP-~~i~~L~~L~~L~l~~  326 (350)
                      .++||+|++++| .|++-- ..+.++++|+.|.+.+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            345666666666 555432 2445555566555543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=84.21  E-value=3.9  Score=42.18  Aligned_cols=147  Identities=19%  Similarity=0.178  Sum_probs=89.5

Q ss_pred             hcCCCCCCcEEEEEeCChHHHhhcccccCCCCCCCceEEcCC----CCCChhhhhhccc-cccCCchhHHHHHHHHHH--
Q 042413           12 VLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGP----MIRLKHESWQFFI-LHYGSMPLENYFLGEAFL--   84 (350)
Q Consensus        12 ~l~~~~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~----L~~~~~~s~~Lf~-f~~~GlPLai~~lg~~L~--   84 (350)
                      .+.....+=..|||||+.--.....-..     -+...+++.    ++  .+|+-++|. -  +|+|+-...+..+..  
T Consensus       153 Ll~~~P~~l~lvv~SR~rP~l~la~lRl-----r~~llEi~~~~Lrf~--~eE~~~fl~~~--~~l~Ld~~~~~~L~~~t  223 (894)
T COG2909         153 LLKHAPENLTLVVTSRSRPQLGLARLRL-----RDELLEIGSEELRFD--TEEAAAFLNDR--GSLPLDAADLKALYDRT  223 (894)
T ss_pred             HHHhCCCCeEEEEEeccCCCCcccceee-----hhhHHhcChHhhcCC--hHHHHHHHHHc--CCCCCChHHHHHHHhhc
Confidence            3445556778999999875432211100     013444432    56  788888887 2  233333333332222  


Q ss_pred             HH--------------------------------HHhhhc--cCCCChhhHHHHhhhhcCCCCceeeHHHHHHHHHHcCC
Q 042413           85 TV--------------------------------WRQIYT--VMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGF  130 (350)
Q Consensus        85 ~~--------------------------------W~~~l~--y~~L~~~lk~cfl~~a~Fp~~~~i~~~~li~~w~a~g~  130 (350)
                      +-                                |++..+  ++.||+.+|...+-||+++.=.    ++|+..-.    
T Consensus       224 eGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~Lt----  295 (894)
T COG2909         224 EGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNALT----  295 (894)
T ss_pred             ccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHHh----
Confidence            22                                333333  9999999999999999875421    23333222    


Q ss_pred             CCCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHhhh
Q 042413          131 IPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEK  182 (350)
Q Consensus       131 i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~~~  182 (350)
                          |++.|...+++|.+++++-..-.   +....|+.|.+..|+-+.-.+.
T Consensus       296 ----g~~ng~amLe~L~~~gLFl~~Ld---d~~~WfryH~LFaeFL~~r~~~  340 (894)
T COG2909         296 ----GEENGQAMLEELERRGLFLQRLD---DEGQWFRYHHLFAEFLRQRLQR  340 (894)
T ss_pred             ----cCCcHHHHHHHHHhCCCceeeec---CCCceeehhHHHHHHHHhhhcc
Confidence                36678889999999999865432   2236799999999998765554

>PF05729 NACHT: NACHT domain

Probab=84.10  E-value=1.6  Score=35.35  Aligned_cols=40  Identities=18%  Similarity=0.268  Sum_probs=31.8

Q ss_pred             CCCcEEEEEeCChHHHh---hcccccCCCCCCCceEEcCCCCCChhhhhhccc
Q 042413           17 QNGSRVLITVTDPELLL---SLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI   66 (350)
Q Consensus        17 ~~GSrIivTTR~~~v~~---~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~   66 (350)
                      -++.+||||||......   .....        ..+++++++  +++..+++.
T Consensus       118 ~~~~~liit~r~~~~~~~~~~~~~~--------~~~~l~~~~--~~~~~~~~~  160 (166)
T PF05729_consen  118 PPGVKLIITSRPRAFPDLRRRLKQA--------QILELEPFS--EEDIKQYLR  160 (166)
T ss_pred             CCCCeEEEEEcCChHHHHHHhcCCC--------cEEEECCCC--HHHHHHHHH
Confidence            56899999999987733   23222        689999999  999999887

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.51  E-value=0.74  Score=25.22  Aligned_cols=17  Identities=18%  Similarity=0.430  Sum_probs=12.5

Q ss_pred             CCCEEEccCCcCcccch
Q 042413          295 NLETLEMPSSYIDQSPH  311 (350)
Q Consensus       295 ~L~~L~l~~~~l~~lP~  311 (350)
                      +|+.|++++|++.++|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            56777777777777775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	2e-11
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	3e-11

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 88.0 bits (217), Expect = 4e-19
 Identities = 65/389 (16%), Positives = 121/389 (31%), Gaps = 111/389 (28%)

Query: 6   WDNLEQVLPDNQNGSRVLIT-----VTDP------------ELLLSLEMENGEKI----- 43
            +   +         ++L+T     VTD                ++L  +  + +     
Sbjct: 254 QN--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 44  ------RPDSVLNGGP--------MIRLKHESWQFFILHYGSMPLENYFLGEAFLTV--- 86
                  P  VL   P         IR    +W  +  H     L      E+ L V   
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-KHVNCDKLTTII--ESSLNVLEP 368

Query: 87  --WRQIYTVMELPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAEHYLK 144
             +R+++               L VFPPS  I T  L  +W          +      + 
Sbjct: 369 AEYRKMFD-------------RLSVFPPSAHIPTILLSLIWFDV------IKSDVMVVVN 409

Query: 145 ELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGFVWMPDMEEESLA--NVKRC 202
           +L     ++  K+    TI    +PS IY  L +  E         +    +   N+ + 
Sbjct: 410 KLHKYSLVE--KQPKESTI---SIPS-IYLELKVKLEN-----EYALHRSIVDHYNIPKT 458

Query: 203 FILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ 262
           F   DL        + D Y  S + H     HL + ++      F+ +  L+        
Sbjct: 459 FDSDDL-----IPPYLDQYFYSHIGH-----HLKNIEHPERMTLFRMV-FLDFR------ 501

Query: 263 YPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYI-DQSPHDIWMMQKLMH 321
                   +L + ++ +  +     S+L TL  L+  +    YI D  P    ++  ++ 
Sbjct: 502 --------FLEQKIRHDSTAWNASGSILNTLQQLKFYK---PYICDNDPKYERLVNAILD 550

Query: 322 LYFYCISPCTSKNYSSSLKNLIFISALHP 350
             F  +         S   +L+ I+ +  
Sbjct: 551 --F--LPKIEENLICSKYTDLLRIALMAE 575

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 44/295 (14%), Positives = 75/295 (25%), Gaps = 85/295 (28%)

Query: 121 LYQLWVAEGFIPYNGEETAEHYLKELIHRG--FIK--VSKRRARDTIKSC--------YV 168
           L      E   P             L +    F K  VS+ +    ++           V
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 169 PSFIY-------TSLAL-VAEKTGFV--------WMPDMEEESLANVKRCFILKDLIDFF 212
              I        T +AL V               W+         N+K C   + +++  
Sbjct: 154 --LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---------NLKNCNSPETVLEML 202

Query: 213 SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRF----KYLRVLNLGSAVLD--QYPSG 266
             L +      +  +  S N  L     +   +R      Y   L L   VL   Q    
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-L---VLLNVQNAKA 258

Query: 267 LE-------------NLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHD- 312
                             +  +L     +   L     TL   E   +   Y+D  P D 
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 313 -----------IWMMQKLMHLYFYCISPCTSKNY----SSSLKNLI--FISALHP 350
                      + ++ + +          T  N+       L  +I   ++ L P
Sbjct: 319 PREVLTTNPRRLSIIAESIR-----DGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 96  LPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNGEETAEHYLKELIHRGFIKVS 155
           L   +K     L +    +++ T+ L  LW  E        E  E  L+E +++  +   
Sbjct: 375 LREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCD 427

Query: 156 KRRARDTIKSCYV 168
           +          Y+
Sbjct: 428 R---NGKSFRYYL 437

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 63.5 bits (154), Expect = 3e-11
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 96  LPFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNG--EETAEHYLKELIHRGFIK 153
           L    +    +  V PP ++I  +    +   +         ++     LK L  RG + 
Sbjct: 385 LSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALL 444

Query: 154 VSKRRARDTIKSCYV 168
             KR    T K  ++
Sbjct: 445 SGKRMPVLTFKIDHI 459

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.94
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.87
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.87
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.77
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.55
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.53
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.51
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.49
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.47
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.47
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.46
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.44
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.44
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.43
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.42
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.42
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.42
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.42
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.41
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.41
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.41
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.4
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.4
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.4
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.4
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.39
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.39
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.38
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.37
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.37
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.37
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.36
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.35
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.34
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.33
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.32
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.32
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.32
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.31
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.3
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.3
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.3
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.29
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.29
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.29
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.28
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.28
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.22
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.22
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.22
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.19
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.17
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.15
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.03
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.98
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.94
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.89
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.74
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.69
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.48
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.45
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.39
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.33
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.29
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.27
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.12
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.1
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.03
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.98
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.94
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.78
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.31
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.15
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.71
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.52
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.13
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.39
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.26
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.81
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.4
2fna_A	357	Conserved hypothetical protein; structural genomic	94.1
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.51
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.46
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.17
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	90.87
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	80.98

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.94  E-value=1.9e-27  Score=233.88  Aligned_cols=151  Identities=21%  Similarity=0.301  Sum_probs=124.7

Q ss_pred             CCcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc---ccc-----------------CCchhHHH
Q 042413           18 NGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI---LHY-----------------GSMPLENY   77 (350)
Q Consensus        18 ~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~---f~~-----------------~GlPLai~   77 (350)
                      +|||||||||++.|+..++...       .+|++++|+  +++||+||+   |+.                 +|+||||+
T Consensus       264 ~gs~ilvTTR~~~v~~~~~~~~-------~~~~l~~L~--~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~  334 (549)
T 2a5y_B          264 LRLRCLVTTRDVEISNAASQTC-------EFIEVTSLE--IDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLM  334 (549)
T ss_dssp             TTCEEEEEESBGGGGGGCCSCE-------EEEECCCCC--HHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCEEEEEcCCHHHHHHcCCCC-------eEEECCCCC--HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHH
Confidence            7999999999999999886321       689999999  999999999   543                 99999999


Q ss_pred             HHHHHHH-HHHHhh--hc------------------cCCCChhhHHHHh-----------hhhcCCCCceeeHHHHHHHH
Q 042413           78 FLGEAFL-TVWRQI--YT------------------VMELPFHLKVCCI-----------YLCVFPPSIEISTRQLYQLW  125 (350)
Q Consensus        78 ~lg~~L~-~~W~~~--l~------------------y~~L~~~lk~cfl-----------~~a~Fp~~~~i~~~~li~~w  125 (350)
                      ++|+.|+ ..|+.+  +.                  |++||+++|.||+           |||+||+++.|+    +++|
T Consensus       335 ~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w  410 (549)
T 2a5y_B          335 MFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLW  410 (549)
T ss_dssp             HHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHH
T ss_pred             HHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeee
Confidence            9999877 333322  11                  9999999999999           999999999998    8999


Q ss_pred             HHc--CCCCCC--C---hhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHhhhcCc
Q 042413          126 VAE--GFIPYN--G---EETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKTGF  185 (350)
Q Consensus       126 ~a~--g~i~~~--~---e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~~~~~~  185 (350)
                      +|+  ||+...  +   ++.++ |+++|+++||++....+   ....|+|||+||++|+.++.++++
T Consensus       411 ~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          411 SCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             HHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             eeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence            999  999765  2   77777 99999999999987643   346799999999999998877653

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.87  E-value=1.4e-22  Score=205.57  Aligned_cols=149  Identities=15%  Similarity=0.222  Sum_probs=126.2

Q ss_pred             CChhhHHHHHhhcCCCCCCcEEEEEeCChHHHhhcccccCCCCCCCceEEcC------CCCCChhhhhhccc--ccc---
Q 042413            1 MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGG------PMIRLKHESWQFFI--LHY---   69 (350)
Q Consensus         1 ~~~~~w~~l~~~l~~~~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~------~L~~~~~~s~~Lf~--f~~---   69 (350)
                      |+.+.|+.+    +   +|||||||||++.++..+...        .+|+++      +|+  ++|||+||+  |+.   
T Consensus       254 wd~eqLe~f----~---pGSRILVTTRd~~Va~~l~g~--------~vy~LeL~d~dL~LS--~eEA~eLF~~~~g~~~e  316 (1221)
T 1vt4_I          254 QNAKAWNAF----N---LSCKILLTTRFKQVTDFLSAA--------TTTHISLDHHSMTLT--PDEVKSLLLKYLDCRPQ  316 (1221)
T ss_dssp             CCHHHHHHH----H---SSCCEEEECSCSHHHHHHHHH--------SSCEEEECSSSSCCC--HHHHHHHHHHHHCCCTT
T ss_pred             ChHHHHHhh----C---CCeEEEEeccChHHHHhcCCC--------eEEEecCccccCCcC--HHHHHHHHHHHcCCCHH
Confidence            566667654    2   799999999999999866554        578888      999  999999999  543   


Q ss_pred             -------CCchhHHHHHHHHHH------HHHHhhhc----------cCCCChhh-HHHHhhhhcCCCCceeeHHHHHHHH
Q 042413           70 -------GSMPLENYFLGEAFL------TVWRQIYT----------VMELPFHL-KVCCIYLCVFPPSIEISTRQLYQLW  125 (350)
Q Consensus        70 -------~GlPLai~~lg~~L~------~~W~~~l~----------y~~L~~~l-k~cfl~~a~Fp~~~~i~~~~li~~w  125 (350)
                             +|+||||+++|+.|+      ++|+..-.          |+.||+++ |+||+|||+||+++.|+++.++.+|
T Consensus       317 eL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW  396 (1221)
T 1vt4_I          317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW  396 (1221)
T ss_dssp             THHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHh
Confidence                   899999999999998      57875422          99999999 9999999999999999999999999


Q ss_pred             HHcCCCCCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHH
Q 042413          126 VAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLA  177 (350)
Q Consensus       126 ~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~  177 (350)
                      +++|      ++.++.++++|+++||++..     +....|+|||++++++.
T Consensus       397 ~aeG------eedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          397 FDVI------KSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKV  437 (1221)
T ss_dssp             CSSC------SHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred             cCCC------HHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence            9987      34688999999999999873     12257999999999663

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.87  E-value=3.9e-22  Score=213.15  Aligned_cols=147  Identities=17%  Similarity=0.265  Sum_probs=126.9

Q ss_pred             CCCcEEEEEeCChHHHhhc-ccccCCCCCCCceEEcCC-CCCChhhhhhccc-ccc-----------------CCchhHH
Q 042413           17 QNGSRVLITVTDPELLLSL-EMENGEKIRPDSVLNGGP-MIRLKHESWQFFI-LHY-----------------GSMPLEN   76 (350)
Q Consensus        17 ~~GSrIivTTR~~~v~~~~-~~~~~~~~~~~~~~~l~~-L~~~~~~s~~Lf~-f~~-----------------~GlPLai   76 (350)
                      ++|||||||||++.|+..+ +..        ..+++++ |+  ++|||+||+ +..                 +|+||||
T Consensus       255 ~~~~~ilvTtR~~~~~~~~~~~~--------~~~~~~~~l~--~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal  324 (1249)
T 3sfz_A          255 DNQCQILLTTRDKSVTDSVMGPK--------HVVPVESGLG--REKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVV  324 (1249)
T ss_dssp             CSSCEEEEEESSTTTTTTCCSCB--------CCEECCSSCC--HHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHH
T ss_pred             cCCCEEEEEcCCHHHHHhhcCCc--------eEEEecCCCC--HHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHH
Confidence            6799999999999999654 443        8899996 99  999999999 211                 9999999


Q ss_pred             HHHHHHHH---HHHHhhhc----------------------------cCCCChhhHHHHhhhhcCCCCceeeHHHHHHHH
Q 042413           77 YFLGEAFL---TVWRQIYT----------------------------VMELPFHLKVCCIYLCVFPPSIEISTRQLYQLW  125 (350)
Q Consensus        77 ~~lg~~L~---~~W~~~l~----------------------------y~~L~~~lk~cfl~~a~Fp~~~~i~~~~li~~w  125 (350)
                      +++|+.|+   ..|+..++                            |+.||+++|.||+|||+||+++.|+++.++.+|
T Consensus       325 ~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~  404 (1249)
T 3sfz_A          325 SLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW  404 (1249)
T ss_dssp             HHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHH
T ss_pred             HHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHh
Confidence            99999998   45554433                            999999999999999999999999999999999


Q ss_pred             HHcCCCCCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHhhhc
Q 042413          126 VAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVAEKT  183 (350)
Q Consensus       126 ~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~~~~  183 (350)
                      .++       ++.++.++++|+++||++...   .++...|+|||++|++++..+.++
T Consensus       405 ~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          405 DLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             TCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             CCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence            776       678999999999999999765   344567999999999999987654

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.77  E-value=2.3e-18  Score=170.82  Aligned_cols=143  Identities=17%  Similarity=0.233  Sum_probs=120.3

Q ss_pred             CCCcEEEEEeCChHHHhhcccccCCCCCCCceEEc---CCCCCChhhhhhccc---ccc---------------CCchhH
Q 042413           17 QNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNG---GPMIRLKHESWQFFI---LHY---------------GSMPLE   75 (350)
Q Consensus        17 ~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l---~~L~~~~~~s~~Lf~---f~~---------------~GlPLa   75 (350)
                      ++||+||||||++.++..+..         ..|++   ++|+  ++|+++||.   +..               +|+|||
T Consensus       255 ~~~~~ilvTsR~~~~~~~~~~---------~~~~v~~l~~L~--~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLa  323 (591)
T 1z6t_A          255 DSQCQILLTTRDKSVTDSVMG---------PKYVVPVESSLG--KEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLV  323 (591)
T ss_dssp             CSSCEEEEEESCGGGGTTCCS---------CEEEEECCSSCC--HHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHH
T ss_pred             cCCCeEEEECCCcHHHHhcCC---------CceEeecCCCCC--HHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHH
Confidence            569999999999999876542         45666   5899  999999998   331               999999


Q ss_pred             HHHHHHHHH---HHHHhhhc----------------------------cCCCChhhHHHHhhhhcCCCCceeeHHHHHHH
Q 042413           76 NYFLGEAFL---TVWRQIYT----------------------------VMELPFHLKVCCIYLCVFPPSIEISTRQLYQL  124 (350)
Q Consensus        76 i~~lg~~L~---~~W~~~l~----------------------------y~~L~~~lk~cfl~~a~Fp~~~~i~~~~li~~  124 (350)
                      |+.+|+.|+   ..|+.+++                            |+.||++.|.||++||+||+++.|+.+.++.+
T Consensus       324 l~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l  403 (591)
T 1z6t_A          324 VSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCIL  403 (591)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHH
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHH
Confidence            999999998   45764432                            89999999999999999999999999999999


Q ss_pred             HHHcCCCCCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHHHHHh
Q 042413          125 WVAEGFIPYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSLALVA  180 (350)
Q Consensus       125 w~a~g~i~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~~~i~  180 (350)
                      |.++       .+.++.++++|+++||++....   +....|+||++++++++...
T Consensus       404 ~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          404 WDME-------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             HTCC-------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred             hccC-------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence            9765       4568899999999999986542   34468999999999998873

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.55  E-value=9.4e-15  Score=134.27  Aligned_cols=85  Identities=16%  Similarity=0.157  Sum_probs=35.5

Q ss_pred             hcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCC-cCcccchhccccccCcE
Q 042413          244 FKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSS-YIDQSPHDIWMMQKLMH  321 (350)
Q Consensus       244 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~-~l~~lP~~i~~L~~L~~  321 (350)
                      +.++++|+.|+|++|.++.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++| .++.+|..++++++|++
T Consensus       202 l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  281 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK  281 (328)
T ss_dssp             GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred             hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence            33344444444444444444434444444444444443322 33444444444444444443 33344444444444444


Q ss_pred             EEeeccC
Q 042413          322 LYFYCIS  328 (350)
Q Consensus       322 L~l~~~~  328 (350)
                      |++++|.
T Consensus       282 L~L~~n~  288 (328)
T 4fcg_A          282 LDLRGCV  288 (328)
T ss_dssp             EECTTCT
T ss_pred             EeCCCCC
Confidence            4444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.54  E-value=1.7e-14  Score=132.58  Aligned_cols=143  Identities=16%  Similarity=0.162  Sum_probs=82.9

Q ss_pred             CCeeEEEEecCcc-chhh-ccCCCCCCeeEEEEecCCCCCCCccchHHH---------hcCCceeeEEEccCCCCCcCcc
Q 042413          197 ANVKRCFILKDLI-DFFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENF---------FKRFKYLRVLNLGSAVLDQYPS  265 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~---------~~~l~~L~~L~L~~~~l~~lp~  265 (350)
                      .+++.|.+..+.. .++. ...++  +|+.|.+.++..    ....+..         +..+++|++|+|++|.++.+|.
T Consensus       127 ~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~L~~n~~----~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~  200 (328)
T 4fcg_A          127 AGLETLTLARNPLRALPASIASLN--RLRELSIRACPE----LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA  200 (328)
T ss_dssp             TTCSEEEEESCCCCCCCGGGGGCT--TCCEEEEEEETT----CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG
T ss_pred             CCCCEEECCCCccccCcHHHhcCc--CCCEEECCCCCC----ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH
Confidence            4455555555554 2222 22334  666666655443    1112222         2236666666666666666666


Q ss_pred             ccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCC-cCcccchhccccccCcEEEeeccCCCCCCCCccccccccc
Q 042413          266 GLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSS-YIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIF  344 (350)
Q Consensus       266 ~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~  344 (350)
                      .++.+++|++|++++|.+..+|+.++.+++|++|++++| ..+.+|..++.+++|++|++++|...+.  .|..+.++++
T Consensus       201 ~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~  278 (328)
T 4fcg_A          201 SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQ  278 (328)
T ss_dssp             GGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB--CCTTGGGCTT
T ss_pred             hhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh--cchhhhcCCC
Confidence            666777777777777777667666777777777777776 5556666677777777777766654443  3444444444


Q ss_pred             ccc
Q 042413          345 ISA  347 (350)
Q Consensus       345 L~~  347 (350)
                      |+.
T Consensus       279 L~~  281 (328)
T 4fcg_A          279 LEK  281 (328)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.53  E-value=4.1e-14  Score=124.80  Aligned_cols=132  Identities=17%  Similarity=0.106  Sum_probs=106.0

Q ss_pred             CCCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCC
Q 042413          195 SLANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENL  270 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l  270 (350)
                      .+..++.|.+..+.. ..+.  ...++  +|+.|.+.++..    ....+..|..+++|++|+|++|.++.+| ..++.+
T Consensus        33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  106 (251)
T 3m19_A           33 IPADTEKLDLQSTGLATLSDATFRGLT--KLTWLNLDYNQL----QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL  106 (251)
T ss_dssp             CCTTCCEEECTTSCCCCCCTTTTTTCT--TCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             CCCCCCEEEccCCCcCccCHhHhcCcc--cCCEEECCCCcC----CccCHhHhccCCcCCEEECCCCcccccChhHhccc
Confidence            346788888888877 2222  33455  999999988876    4456667888999999999999988776 456889


Q ss_pred             CCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCC
Q 042413          271 YLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       271 ~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ++|++|++++|.++.+|+. ++.+++|++|++++|.+..+|. .++.+++|++|++++|.....
T Consensus       107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A          107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            9999999999999988776 4789999999999998888887 588899999999998877655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.51  E-value=5.1e-14  Score=122.59  Aligned_cols=128  Identities=21%  Similarity=0.228  Sum_probs=80.7

Q ss_pred             CCCeeEEEEecCcc-ch-hh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCC
Q 042413          196 LANVKRCFILKDLI-DF-FS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLY  271 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~-~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~  271 (350)
                      +..+++|.+..+.+ .. +. ...++  +|+.|.+.++..    ..+.+..|..+++|++|+|++|.++.+|.. +..++
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~N~l----~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  112 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLI--NLKELYLGSNQL----GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV  112 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCT--TCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCcc--CCcEEECCCCCC----CCcChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence            35666677666665 22 11 22344  677777766665    334445566677777777777776666543 45677


Q ss_pred             CCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCC
Q 042413          272 LLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       272 ~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~  329 (350)
                      +|++|++++|.++.+|..+..+++|++|++++|.+..+|. .+..+++|+.|++++|..
T Consensus       113 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            7777777777777777767777777777777776666664 456666777777766643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.50  E-value=8.8e-14  Score=124.24  Aligned_cols=131  Identities=21%  Similarity=0.254  Sum_probs=104.7

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYLL  273 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L  273 (350)
                      ...+++|.+..+.. ..+....++  +|+.|.+.++..    ....+..+..+++|++|++++|.++.+|.. ++.+++|
T Consensus        62 l~~L~~L~l~~n~l~~~~~l~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  135 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDISALKELT--NLTYLILTGNQL----QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL  135 (272)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTCT--TCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCCcEEECCCCCCCCchhhcCCC--CCCEEECCCCcc----CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence            46788888888777 444455666  899999988876    455666678889999999999998877654 6888999


Q ss_pred             CeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCCCCC
Q 042413          274 KYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       274 ~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ++|++++|.++.+|+. ++.+++|++|++++|.+..+|.. ++.+++|++|++++|.....
T Consensus       136 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            9999999998888765 47889999999999988887764 57889999999988876655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=6.8e-14  Score=121.05  Aligned_cols=128  Identities=16%  Similarity=0.164  Sum_probs=89.6

Q ss_pred             CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCC
Q 042413          196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLY  271 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~  271 (350)
                      +..++.|.+..+.+ .++.  ...++  +|+.|.+.++..    ....+..|..+++|++|+|++|.++.+|.. +..++
T Consensus        31 ~~~l~~L~l~~n~i~~i~~~~~~~l~--~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~  104 (220)
T 2v9t_B           31 PETITEIRLEQNTIKVIPPGAFSPYK--KLRRIDLSNNQI----SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF  104 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCT--TCCEEECCSSCC----CEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CcCCCEEECCCCcCCCcCHhHhhCCC--CCCEEECCCCcC----CCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence            35677777777766 2222  22444  777887777776    445566777778888888888887777754 46677


Q ss_pred             CCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCC
Q 042413          272 LLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       272 ~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~  329 (350)
                      +|++|+|++|.++.+ |..+..+++|++|++++|.+..+|. .+..+++|++|++++|..
T Consensus       105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            888888888877766 4556777788888888887777765 467777788888877643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.49  E-value=1.9e-13  Score=116.04  Aligned_cols=139  Identities=11%  Similarity=0.088  Sum_probs=112.9

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-CccccCCCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSGLENLYLLK  274 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~  274 (350)
                      ..++++.+..+.+ .++....++  +|++|.+.++...     .+ ..+..+++|+.|++++|.++. .|..++.+++|+
T Consensus        44 ~~L~~L~l~~n~i~~l~~l~~l~--~L~~L~l~~n~~~-----~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTGIEYAH--NIKDLTINNIHAT-----NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HTCCEEEEESSCCSCCTTGGGCT--TCSEEEEESCCCS-----CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             CCccEEeccCCCccChHHHhcCC--CCCEEEccCCCCC-----cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            5688999998887 555555677  9999999998652     12 468889999999999999984 788899999999


Q ss_pred             eeeeeCCCCc-ccchhhhcCcCCCEEEccCCc-CcccchhccccccCcEEEeeccCCCCCCCCcccccccccc
Q 042413          275 YLKLNIPSLK-CLHSLLCTLLNLETLEMPSSY-IDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFI  345 (350)
Q Consensus       275 ~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~-l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L  345 (350)
                      +|++++|.++ ..|..++.+++|++|++++|. +..+| .+..+++|++|++++|...... .+..+++|+.|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L  186 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQL  186 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEE
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEE
Confidence            9999999998 478889999999999999996 99998 6999999999999998765542 23334444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.47  E-value=2.7e-13  Score=120.87  Aligned_cols=130  Identities=16%  Similarity=0.186  Sum_probs=82.4

Q ss_pred             CCeeEEEEecCcc-chhhc--cCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFSS--LKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYL  272 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~--~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~  272 (350)
                      .++++|.+..+.. .++..  ..++  +|++|.+.++..    ....+..|..+++|++|++++|.++.+| ..++.+++
T Consensus        61 ~~L~~L~l~~n~l~~i~~~~~~~l~--~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  134 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLPAGIFKELK--NLETLWVTDNKL----QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK  134 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTSSCT--TCCEEECCSSCC----CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCEEECCCCccCeeChhhhcCCC--CCCEEECCCCcC----CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence            4556666655554 22221  2234  666666666655    3344455666777777777777776555 34567777


Q ss_pred             CCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCC
Q 042413          273 LKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       273 L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |++|++++|.++.+|.. ++.+++|++|++++|.+..+|. .+..+++|++|++++|.....
T Consensus       135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence            77777777777766654 5677777777777777776665 366777777777777755544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.47  E-value=1.1e-13  Score=140.06  Aligned_cols=107  Identities=20%  Similarity=0.163  Sum_probs=75.6

Q ss_pred             chHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhcccccc
Q 042413          239 DYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQK  318 (350)
Q Consensus       239 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~  318 (350)
                      .++..+..++.|+.|+|++|.+..+|..+..+++|++|+|++|.|+.+|.+++.|.+|++|+|++|.+..+|.+|+.|++
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            45566777888888888888887888777788888888888888888888888888888888888877788888888888


Q ss_pred             CcEEEeeccCCCCCCCCccccccccccccc
Q 042413          319 LMHLYFYCISPCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       319 L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L  348 (350)
                      |++|++++|.+..   +|..+.+|++|+.|
T Consensus       295 L~~L~L~~N~l~~---lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          295 LKYFYFFDNMVTT---LPWEFGNLCNLQFL  321 (727)
T ss_dssp             CSEEECCSSCCCC---CCSSTTSCTTCCCE
T ss_pred             CCEEECCCCCCCc---cChhhhcCCCccEE
Confidence            8888887776543   34445555555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=1.2e-13  Score=114.13  Aligned_cols=124  Identities=16%  Similarity=0.036  Sum_probs=65.2

Q ss_pred             CCeeEEEEecCccc---hhhc-cCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-CccccCCCC
Q 042413          197 ANVKRCFILKDLID---FFSS-LKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSGLENLY  271 (350)
Q Consensus       197 ~~~r~L~l~~~~~~---~~~~-~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~  271 (350)
                      ..+++|.+..+...   ++.. ..++  +|+.|.+.++...    ..  ..+..+++|++|++++|.++. +|..+..++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~--~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFV--NLEFLSLINVGLI----SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGG--GCCEEEEESSCCC----CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCC--CCCEEeCcCCCCC----Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            44555555555442   2222 2333  5555555555542    11  344555555666666555554 444444455


Q ss_pred             CCCeeeeeCCCCcccc--hhhhcCcCCCEEEccCCcCcccch----hccccccCcEEEeeccC
Q 042413          272 LLKYLKLNIPSLKCLH--SLLCTLLNLETLEMPSSYIDQSPH----DIWMMQKLMHLYFYCIS  328 (350)
Q Consensus       272 ~L~~L~l~~~~l~~lP--~~i~~l~~L~~L~l~~~~l~~lP~----~i~~L~~L~~L~l~~~~  328 (350)
                      +|++|++++|.++.+|  ..++.+++|++|++++|.+..+|.    .+..+++|++|++++|.
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            5666666655555544  455555556666665555555554    45555556665555553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.47  E-value=2.8e-13  Score=120.80  Aligned_cols=131  Identities=20%  Similarity=0.185  Sum_probs=87.4

Q ss_pred             CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCC
Q 042413          196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLY  271 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~  271 (350)
                      +..+++|.+..+.+ ..+.  ...++  +|+.|.+.++..    ....+..|..+++|++|++++|.++.+|. .+..++
T Consensus        36 ~~~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l----~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  109 (270)
T 2o6q_A           36 PADTKKLDLQSNKLSSLPSKAFHRLT--KLRLLYLNDNKL----QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV  109 (270)
T ss_dssp             CTTCSEEECCSSCCSCCCTTSSSSCT--TCCEEECCSSCC----SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred             CCCCCEEECcCCCCCeeCHHHhcCCC--CCCEEECCCCcc----CeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence            35677777776665 2222  22444  777777777665    34455556777777777777777776664 346677


Q ss_pred             CCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCCCCC
Q 042413          272 LLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       272 ~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~  332 (350)
                      +|++|++++|.++.+|+. ++.+++|++|++++|.+..+|.. +..+++|++|++++|.....
T Consensus       110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A          110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            777777777777766543 46777777777777777777664 66777777777777755544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.46  E-value=1.6e-13  Score=118.69  Aligned_cols=128  Identities=16%  Similarity=0.096  Sum_probs=92.7

Q ss_pred             CCCeeEEEEecCcc-ch-hh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCC
Q 042413          196 LANVKRCFILKDLI-DF-FS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENL  270 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~-~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l  270 (350)
                      +..++.|.+..+.+ .. +.  ...++  +|+.|.+.++..    ....+..|..+++|++|+|++|.++.+|. .++.+
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~--~L~~L~L~~N~i----~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  104 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLP--QLRKINFSNNKI----TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL  104 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCT--TCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCC--CCCEEECCCCcC----CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence            34567777777776 22 11  23455  888888877776    44555677788888888888888876654 47778


Q ss_pred             CCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCccc-chhccccccCcEEEeeccCC
Q 042413          271 YLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       271 ~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~  329 (350)
                      ++|++|+|++|.++.+ |..+..+++|++|++++|.+..+ |..+..+++|+.|++++|..
T Consensus       105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            8888888888888766 56677888888888888877777 56777888888888877754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.46  E-value=3e-13  Score=117.70  Aligned_cols=121  Identities=25%  Similarity=0.260  Sum_probs=102.9

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~  298 (350)
                      +++.|.+.++..    ....+..|..+++|++|+|++|.++.+|.. +..+++|++|+|++|.++.+|.. +..+++|++
T Consensus        41 ~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           41 NAQILYLHDNQI----TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             TCSEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEEcCCCcc----CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence            999999999987    456667889999999999999999988854 68999999999999999999876 588999999


Q ss_pred             EEccCCcCcccchhccccccCcEEEeeccCCCCCCC-Ccccccccccc
Q 042413          299 LEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKN-YSSSLKNLIFI  345 (350)
Q Consensus       299 L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L  345 (350)
                      |++++|.+..+|..+..+++|++|++++|.....+. .+..+.+|+.|
T Consensus       117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A          117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             EECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             EeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            999999999999999999999999999997776532 23334444433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.45  E-value=6.8e-14  Score=113.19  Aligned_cols=109  Identities=19%  Similarity=0.213  Sum_probs=90.5

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcc-cchhhhcCcCCCEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKC-LHSLLCTLLNLETL  299 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~-lP~~i~~l~~L~~L  299 (350)
                      +++.|.+.++...   ....+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++|++|
T Consensus        18 ~l~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           18 DVKELVLDNSRSN---EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GCSEEECTTCBCB---TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             cCeEEEccCCcCC---hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            7888888888762   134455678889999999999998877 778889999999999999986 78877889999999


Q ss_pred             EccCCcCcccc--hhccccccCcEEEeeccCCCCCC
Q 042413          300 EMPSSYIDQSP--HDIWMMQKLMHLYFYCISPCTSK  333 (350)
Q Consensus       300 ~l~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~  333 (350)
                      ++++|.+..+|  ..++.+++|++|++++|.....+
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence            99999888876  78899999999999988766553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.44  E-value=3.6e-13  Score=120.89  Aligned_cols=107  Identities=19%  Similarity=0.253  Sum_probs=57.8

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~  298 (350)
                      +|++|.+.++..    ....+..+..+++|++|++++|.++.+|. .++.+++|++|++++|.++.+|.. +..+++|++
T Consensus       106 ~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  181 (285)
T 1ozn_A          106 RLHTLHLDRCGL----QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR  181 (285)
T ss_dssp             TCCEEECTTSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCCcC----CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence            555555555443    22333445555555666666555554443 245555666666666655555442 455566666


Q ss_pred             EEccCCcCccc-chhccccccCcEEEeeccCCCC
Q 042413          299 LEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       299 L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~  331 (350)
                      |++++|.+..+ |..++.+++|+.|++++|....
T Consensus       182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence            66666644444 4455556666666665554443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.44  E-value=5.2e-13  Score=114.19  Aligned_cols=130  Identities=18%  Similarity=0.173  Sum_probs=102.9

Q ss_pred             CCCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCC
Q 042413          195 SLANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENL  270 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l  270 (350)
                      .+..+++|.+..+.. ..+.  ...++  +|+.|.+.++..    ....+..|..+++|++|++++|.++.+|.. ++.+
T Consensus        26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   99 (208)
T 2o6s_A           26 IPAQTTYLDLETNSLKSLPNGVFDELT--SLTQLYLGGNKL----QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL   99 (208)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCCcEEEcCCCccCcCChhhhcccc--cCcEEECCCCcc----CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence            346788899888877 3333  22455  899999988876    445556678899999999999998877754 6789


Q ss_pred             CCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCCC
Q 042413          271 YLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       271 ~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~  330 (350)
                      ++|++|++++|.++.+|+. ++.+++|++|++++|.+..+|.. +..+++|++|++++|...
T Consensus       100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            9999999999999888765 58889999999999988888775 778899999999887543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.43  E-value=5.4e-13  Score=120.32  Aligned_cols=88  Identities=24%  Similarity=0.220  Sum_probs=45.5

Q ss_pred             HhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchh-ccccccC
Q 042413          243 FFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHD-IWMMQKL  319 (350)
Q Consensus       243 ~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L  319 (350)
                      .+..+++|++|++++|.++.+| ..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+..+|.. +..+++|
T Consensus        95 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G           95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (290)
T ss_dssp             CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence            3444555555555555555444 3345555555555555555555443 24555555555555555555543 2445555


Q ss_pred             cEEEeeccCCC
Q 042413          320 MHLYFYCISPC  330 (350)
Q Consensus       320 ~~L~l~~~~~~  330 (350)
                      ++|++++|...
T Consensus       175 ~~L~L~~N~l~  185 (290)
T 1p9a_G          175 DTLLLQENSLY  185 (290)
T ss_dssp             CEEECCSSCCC
T ss_pred             CEEECCCCcCC
Confidence            55555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.43  E-value=2.3e-13  Score=124.12  Aligned_cols=127  Identities=13%  Similarity=0.078  Sum_probs=71.2

Q ss_pred             CCeeEEEEecCccc----hhh-ccCCCCCCeeEEEEec-CCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCC
Q 042413          197 ANVKRCFILKDLID----FFS-SLKHSDMYLQSFLNHS-SKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLEN  269 (350)
Q Consensus       197 ~~~r~L~l~~~~~~----~~~-~~~~~~~~Lr~L~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~  269 (350)
                      .++++|.+..+...    .+. ...++  +|++|.+.+ +..    ....+..+.++++|++|+|++|.++ .+|..++.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~--~L~~L~L~~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  123 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLP--YLNFLYIGGINNL----VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ  123 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCT--TCSEEEEEEETTE----ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCC--CCCeeeCCCCCcc----cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence            45666666655542    122 22344  666666663 433    2233445556666666666666655 55556666


Q ss_pred             CCCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcCc-ccchhccccc-cCcEEEeeccCC
Q 042413          270 LYLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYID-QSPHDIWMMQ-KLMHLYFYCISP  329 (350)
Q Consensus       270 l~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l~-~lP~~i~~L~-~L~~L~l~~~~~  329 (350)
                      +++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.++ +|++|++++|..
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            666666666666655 55666666666666666666544 5566666655 566666655533

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.42  E-value=5.3e-13  Score=119.79  Aligned_cols=144  Identities=17%  Similarity=0.163  Sum_probs=93.8

Q ss_pred             CCeeEEEEecCcc-ch-h-hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCC
Q 042413          197 ANVKRCFILKDLI-DF-F-SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYL  272 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~-~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~  272 (350)
                      ..+++|.+..+.. .. + ....++  +|++|.+.++..   .....+..+..+++|+.|++++|.++.+ |..+..+++
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  130 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLA--LLEQLDLSDNAQ---LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA  130 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSCTT---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             CCCCEEECCCCccceeCHhhcCCcc--CCCEEeCCCCCC---ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence            4566666666655 22 1 122344  777777776652   1334456677777788888888777755 456777788


Q ss_pred             CCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          273 LKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       273 L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      |++|++++|.++.+|.. ++.+++|++|++++|.+..+|. .+..+++|++|++++|.....  .+..+.++++|+.
T Consensus       131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~  205 (285)
T 1ozn_A          131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV--HPHAFRDLGRLMT  205 (285)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCE
T ss_pred             CCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc--CHhHccCcccccE
Confidence            88888888877777654 6777888888888887777776 477778888888877765544  2333444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.42  E-value=3.9e-13  Score=120.11  Aligned_cols=131  Identities=15%  Similarity=0.092  Sum_probs=93.6

Q ss_pred             CCCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCC
Q 042413          196 LANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLY  271 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~  271 (350)
                      +..+++|.+..+.. ..+  ....++  +|+.|.+.++..    ....+..|..+++|++|++++|.++.++ ..+..++
T Consensus        27 ~~~l~~L~ls~n~l~~~~~~~~~~l~--~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCT--TCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CCCccEEECCCCcccccCHhHhcccc--CCcEEECCCCcC----CccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence            45678888877766 222  233455  888888877765    4455556777888888888888877554 5677788


Q ss_pred             CCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcc--cchhccccccCcEEEeeccCCCCC
Q 042413          272 LLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQ--SPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       272 ~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      +|++|++++|.+..++. .++.+++|++|++++|.+..  +|..++.+++|++|++++|.....
T Consensus       101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            88888888887776655 57778888888888886665  677788888888888877765443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.42  E-value=6.9e-13  Score=118.37  Aligned_cols=128  Identities=18%  Similarity=0.144  Sum_probs=108.0

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYLLK  274 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~  274 (350)
                      ..++.+.+..+.. ..+....++  +|+.|.+.++...    ..  +.+..+++|++|++++|.++.+|.. ++.+++|+
T Consensus        41 ~~L~~L~l~~~~i~~~~~l~~l~--~L~~L~l~~n~l~----~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQGIQYLP--NVRYLALGGNKLH----DI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCT--TCCEEECTTSCCC----CC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cceeeeeeCCCCcccccccccCC--CCcEEECCCCCCC----Cc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            5688888887776 444455677  9999999998873    22  4788999999999999999977754 68999999


Q ss_pred             eeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCCCCC
Q 042413          275 YLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~  332 (350)
                      +|++++|.++.+|+. ++.+++|++|++++|.+..+|.. ++.+++|++|++++|.....
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL  172 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence            999999999988765 68999999999999998888875 68999999999999977654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.42  E-value=8.4e-13  Score=114.14  Aligned_cols=121  Identities=18%  Similarity=0.162  Sum_probs=102.0

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~  298 (350)
                      +++.|.+.++.+    ....+..|..+++|+.|+|++|.++.+ |..+..+++|++|+|++|.++.+|..+ ..+++|++
T Consensus        33 ~l~~L~l~~n~i----~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           33 TITEIRLEQNTI----KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             TCCEEECCSSCC----CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEECCCCcC----CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence            899999999987    556667889999999999999999966 788999999999999999999998874 78999999


Q ss_pred             EEccCCcCcccc-hhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          299 LEMPSSYIDQSP-HDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       299 L~l~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      |++++|.+..++ ..+..+++|++|++++|.....+.  ..+..+++|+.
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~  156 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQT  156 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCE
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCE
Confidence            999999888884 578999999999999998776632  23444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.42  E-value=5.4e-13  Score=120.34  Aligned_cols=143  Identities=17%  Similarity=0.119  Sum_probs=113.4

Q ss_pred             CCCCeeEEEEecCcc-ch--hhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCC
Q 042413          195 SLANVKRCFILKDLI-DF--FSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLY  271 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~--~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~  271 (350)
                      .+..++.|.+..+.+ ..  .....++  +|+.|.+.++...    ....  ...+++|++|++++|.++.+|..+..++
T Consensus        29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~--~L~~L~L~~n~l~----~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  100 (290)
T 1p9a_G           29 LPKDTTILHLSENLLYTFSLATLMPYT--RLTQLNLDRAELT----KLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLP  100 (290)
T ss_dssp             CCTTCCEEECTTSCCSEEEGGGGTTCT--TCCEEECTTSCCC----EEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCT
T ss_pred             CCCCCCEEEcCCCcCCccCHHHhhcCC--CCCEEECCCCccC----cccC--CCCCCcCCEEECCCCcCCcCchhhccCC
Confidence            346789999998887 22  2234566  9999999998873    2222  2788999999999999999999999999


Q ss_pred             CCCeeeeeCCCCcccc-hhhhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCCCCCCC-Ccccccccccc
Q 042413          272 LLKYLKLNIPSLKCLH-SLLCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTSKN-YSSSLKNLIFI  345 (350)
Q Consensus       272 ~L~~L~l~~~~l~~lP-~~i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L  345 (350)
                      +|++|++++|.++.+| ..+..+++|++|++++|.+..+|.. +..+++|+.|++++|.....+. .+..+.+|+.|
T Consensus       101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G          101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL  177 (290)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence            9999999999999887 4589999999999999999998875 5789999999999997766532 23334444433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.41  E-value=3.4e-13  Score=133.84  Aligned_cols=132  Identities=15%  Similarity=0.080  Sum_probs=107.6

Q ss_pred             CCCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCC
Q 042413          195 SLANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENL  270 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l  270 (350)
                      .+..+++|.+..+.+ .++.  ...++  +|+.|.+.++.+    ..+.+..|.++++|++|+|++|.++.+|. .++++
T Consensus        50 lp~~~~~LdLs~N~i~~l~~~~f~~l~--~L~~L~Ls~N~i----~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L  123 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL  123 (635)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred             CCcCCCEEEeeCCCCCCCCHHHHhCCC--CCCEEECCCCcC----CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence            456889999998887 3332  34556  999999998876    55667788999999999999999998874 57889


Q ss_pred             CCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcc--cchhccccccCcEEEeeccCCCCC
Q 042413          271 YLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQ--SPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       271 ~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ++|++|++++|.++.+|+ .++++++|++|++++|.+..  +|..++.+++|++|++++|.....
T Consensus       124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            999999999999998876 47899999999999997654  577888999999999988866554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.41  E-value=9.4e-13  Score=112.55  Aligned_cols=108  Identities=20%  Similarity=0.260  Sum_probs=92.7

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~  298 (350)
                      +++.|.+.++..    ....+..|..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|.. ++.+++|++
T Consensus        29 ~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           29 QTTYLDLETNSL----KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             TCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCcEEEcCCCcc----CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence            899999999887    445666788999999999999999988754 57899999999999999988765 589999999


Q ss_pred             EEccCCcCcccchh-ccccccCcEEEeeccCCCCC
Q 042413          299 LEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       299 L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |++++|.+..+|.. +..+++|++|++++|.....
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  139 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV  139 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCCcccee
Confidence            99999988888875 68899999999999876654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.41  E-value=3.8e-13  Score=133.38  Aligned_cols=132  Identities=17%  Similarity=0.115  Sum_probs=112.9

Q ss_pred             CCCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCC
Q 042413          195 SLANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENL  270 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l  270 (350)
                      .+..+++|.+..+.. ..+.  ...++  +|++|.+.++..    ....+..|.++++|++|+|++|.++.+ |..++++
T Consensus        30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  103 (606)
T 3vq2_A           30 IPSSTKNIDLSFNPLKILKSYSFSNFS--ELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL  103 (606)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred             CCCCcCEEECCCCCcCEeChhhccCCc--cCcEEeCCCCcc----cccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence            457899999999887 3332  34566  999999999876    556677899999999999999999876 7889999


Q ss_pred             CCCCeeeeeCCCCcccc-hhhhcCcCCCEEEccCCcCc--ccchhccccccCcEEEeeccCCCCC
Q 042413          271 YLLKYLKLNIPSLKCLH-SLLCTLLNLETLEMPSSYID--QSPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       271 ~~L~~L~l~~~~l~~lP-~~i~~l~~L~~L~l~~~~l~--~lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ++|++|++++|.+..+| ..++++++|++|++++|.+.  .+|..++++++|++|++++|.....
T Consensus       104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            99999999999998876 67899999999999999776  5899999999999999999876554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.41  E-value=7.4e-13  Score=116.72  Aligned_cols=127  Identities=17%  Similarity=0.113  Sum_probs=103.1

Q ss_pred             eEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeee
Q 042413          200 KRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLK  277 (350)
Q Consensus       200 r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~  277 (350)
                      +++....+.. .+|.... +  .++.|.+.++..    ....+..|.++++|++|+|++|.++.++ ..+..+++|++|+
T Consensus        17 ~~l~~~~~~l~~~p~~~~-~--~l~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           17 KEVDCQGKSLDSVPSGIP-A--DTEKLDLQSTGL----ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             TEEECTTCCCSSCCSCCC-T--TCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             eEEecCCCCccccCCCCC-C--CCCEEEccCCCc----CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            3444444444 3443332 4  899999999887    4566677899999999999999999766 4578999999999


Q ss_pred             eeCCCCcccch-hhhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCCCCCC
Q 042413          278 LNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTSK  333 (350)
Q Consensus       278 l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~  333 (350)
                      +++|.++.+|. .++.+++|++|++++|.+..+|.. +..+++|++|++++|.....+
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP  147 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence            99999998875 458999999999999999999875 688999999999999776653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.41  E-value=3.6e-13  Score=111.20  Aligned_cols=110  Identities=21%  Similarity=0.206  Sum_probs=96.3

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcc-cchhhhcCcCCCEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKC-LHSLLCTLLNLETL  299 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~-lP~~i~~l~~L~~L  299 (350)
                      +++.|.+.++...   ...++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++|++|
T Consensus        25 ~L~~L~l~~n~l~---~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           25 AVRELVLDNCKSN---DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             SCSEEECCSCBCB---TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cCCEEECCCCCCC---hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            8999999998872   134455678899999999999999988 789999999999999999987 78888889999999


Q ss_pred             EccCCcCcccc--hhccccccCcEEEeeccCCCCCCC
Q 042413          300 EMPSSYIDQSP--HDIWMMQKLMHLYFYCISPCTSKN  334 (350)
Q Consensus       300 ~l~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~~  334 (350)
                      ++++|.+..+|  ..+..+++|++|++++|.....+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            99999999987  689999999999999997766543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=3.5e-13  Score=112.26  Aligned_cols=81  Identities=15%  Similarity=0.133  Sum_probs=45.0

Q ss_pred             eeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCEEEccCCcCcccch--hccccccCcEEEee
Q 042413          249 YLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLETLEMPSSYIDQSPH--DIWMMQKLMHLYFY  325 (350)
Q Consensus       249 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l~  325 (350)
                      +|++|++++|.++.+ ..++.+++|++|++++|.++.+|+.+ +.+++|++|++++|.+..+|.  .++.+++|++|+++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence            555555555555544 34555555555555555555555443 555555555555555555554  45555555555555


Q ss_pred             ccCCC
Q 042413          326 CISPC  330 (350)
Q Consensus       326 ~~~~~  330 (350)
                      +|...
T Consensus       122 ~N~i~  126 (176)
T 1a9n_A          122 RNPVT  126 (176)
T ss_dssp             SSGGG
T ss_pred             CCCCC
Confidence            55443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.40  E-value=8.2e-13  Score=114.20  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=106.9

Q ss_pred             EEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccc-hHHHhcCCceeeEEEccCCCCCcCcc-ccCCCCCCCeee
Q 042413          201 RCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKD-YENFFKRFKYLRVLNLGSAVLDQYPS-GLENLYLLKYLK  277 (350)
Q Consensus       201 ~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~  277 (350)
                      .+.+..+.. .+|... ..  .++.|.+.++..    ... ....|..+++|+.|+|++|.++.++. .++.+++|++|+
T Consensus        15 ~l~~s~n~l~~iP~~~-~~--~~~~L~L~~N~l----~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHI-PQ--YTAELRLNNNEF----TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             EEECCSSCCSSCCSCC-CT--TCSEEECCSSCC----CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             EeEeCCCCcccCccCC-CC--CCCEEEcCCCcC----CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence            445555544 444322 33  778999999887    333 33558899999999999999997764 799999999999


Q ss_pred             eeCCCCcccchh-hhcCcCCCEEEccCCcCccc-chhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          278 LNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       278 l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      |++|.++.+|+. ++.+++|++|++++|.+..+ |..+..+++|++|++++|.....  .+..+..+++|+.
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~  157 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV--APGAFDTLHSLST  157 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB--CTTTTTTCTTCCE
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE--CHHHhcCCCCCCE
Confidence            999999988765 78999999999999988887 56899999999999999987766  2344444554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.40  E-value=1.1e-12  Score=111.37  Aligned_cols=127  Identities=17%  Similarity=0.139  Sum_probs=108.0

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLENLYLL  273 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L  273 (350)
                      ...++.|.+..+.. ..+....++  +|+.|.+.++..    ....+..+..+++|++|++++|.++ ..|..++.+++|
T Consensus        65 l~~L~~L~l~~n~~~~~~~l~~l~--~L~~L~l~~n~l----~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A           65 AHNIKDLTINNIHATNYNPISGLS--NLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             CTTCSEEEEESCCCSCCGGGTTCT--TCCEEEEECTTC----BGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred             CCCCCEEEccCCCCCcchhhhcCC--CCCEEEeECCcc----CcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence            46799999999876 444455667  999999999887    3334566889999999999999998 478889999999


Q ss_pred             CeeeeeCCC-CcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCC
Q 042413          274 KYLKLNIPS-LKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       274 ~~L~l~~~~-l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                      ++|++++|. ++.+| .+..+++|++|++++|.+..+| .+..+++|++|++++|...
T Consensus       139 ~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          139 NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            999999998 88887 6999999999999999999988 7999999999999998653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.40  E-value=1.7e-12  Score=115.34  Aligned_cols=124  Identities=16%  Similarity=0.056  Sum_probs=80.4

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY  275 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~  275 (350)
                      ..++.|.+.++.+ .++....++  +|+.|.+.++...    ...+  +..+++|+.|+|++|.++.+|....  .+|++
T Consensus        41 ~~L~~L~l~~n~i~~l~~l~~l~--~L~~L~L~~N~i~----~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~  110 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLAGMQFFT--NLKELHLSHNQIS----DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR  110 (263)
T ss_dssp             TTCSEEECTTSCCCCCTTGGGCT--TCCEEECCSSCCC----CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred             CcCcEEECcCCCcccchHHhhCC--CCCEEECCCCccC----CChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence            4566666666655 344334455  7777777777652    2322  6777777777777777776664333  67777


Q ss_pred             eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413          276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |++++|.++.+| .++.+++|++|++++|.+..+| .++.+++|++|++++|.....
T Consensus       111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          111 LFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             EECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             EEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence            777777777665 3667777777777777766665 566777777777777655443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.40  E-value=2.8e-13  Score=125.42  Aligned_cols=143  Identities=21%  Similarity=0.154  Sum_probs=101.3

Q ss_pred             CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCC
Q 042413          196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLY  271 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~  271 (350)
                      +..+++|.+..+.. ..+.  ...++  +|++|.+.++..    ....+..|.++++|++|++++|.++.+|.. ++.++
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  124 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCV--NLQALVLTSNGI----NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS  124 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred             cccCcEEECCCCcCcccCHHHhccCC--CCCEEECCCCcc----CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence            35788888887776 3332  33455  888888887765    445556677888888888888888877765 77888


Q ss_pred             CCCeeeeeCCCCcccch--hhhcCcCCCEEEccCC-cCcccc-hhccccccCcEEEeeccCCCCCCCCccccccccccc
Q 042413          272 LLKYLKLNIPSLKCLHS--LLCTLLNLETLEMPSS-YIDQSP-HDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFIS  346 (350)
Q Consensus       272 ~L~~L~l~~~~l~~lP~--~i~~l~~L~~L~l~~~-~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~  346 (350)
                      +|++|++++|.++.+|.  .++.+++|++|++++| .+..+| ..++.+++|++|++++|.....  .+..+.++++|+
T Consensus       125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~  201 (353)
T 2z80_A          125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY--EPKSLKSIQNVS  201 (353)
T ss_dssp             TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--CTTTTTTCSEEE
T ss_pred             cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc--CHHHHhccccCC
Confidence            88888888888888876  5678888888888887 577664 4677888888888887765544  233344444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.40  E-value=1.6e-12  Score=118.26  Aligned_cols=126  Identities=16%  Similarity=0.148  Sum_probs=99.7

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      ...++.|.+..+.. ..+....++  +|+.|.+.++...    ..  +.+..+++|+.|++++|.++.+|. ++.+++|+
T Consensus        62 l~~L~~L~L~~n~i~~~~~~~~l~--~L~~L~L~~n~l~----~~--~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  132 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAPLKNLT--KITELELSGNPLK----NV--SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ  132 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCC--SCCEEECCSCCCS----CC--GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred             cCCCCEEEccCCcCCCChhHccCC--CCCEEEccCCcCC----Cc--hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence            46788888887776 444444566  8888888888763    22  357788888999999888887765 88888999


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      +|++++|.++.+|. ++.+++|++|++++|.+..+|. +..+++|++|++++|.....
T Consensus       133 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          133 VLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             EEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             EEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC
Confidence            99999988888876 8888899999999988888877 88888999999988866554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.39  E-value=3.7e-13  Score=132.43  Aligned_cols=107  Identities=17%  Similarity=0.173  Sum_probs=96.1

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE  300 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~  300 (350)
                      .|+.|.+.++...    .+ +. +..+++|+.|+|++|.++.+|..++.+++|++|+|++|.++.+| .++.+++|++|+
T Consensus       442 ~L~~L~Ls~n~l~----~l-p~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~  514 (567)
T 1dce_A          442 DVRVLHLAHKDLT----VL-CH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELL  514 (567)
T ss_dssp             TCSEEECTTSCCS----SC-CC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred             CceEEEecCCCCC----CC-cC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence            6888999888773    33 33 88999999999999999999999999999999999999999998 899999999999


Q ss_pred             ccCCcCccc--chhccccccCcEEEeeccCCCCCCC
Q 042413          301 MPSSYIDQS--PHDIWMMQKLMHLYFYCISPCTSKN  334 (350)
Q Consensus       301 l~~~~l~~l--P~~i~~L~~L~~L~l~~~~~~~~~~  334 (350)
                      +++|.+..+  |..++.+++|+.|++++|...+.+.
T Consensus       515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            999998888  8999999999999999998776654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.39  E-value=4.4e-13  Score=122.20  Aligned_cols=128  Identities=12%  Similarity=0.125  Sum_probs=87.0

Q ss_pred             CCCeeEEEEec-Ccc--chhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCCC
Q 042413          196 LANVKRCFILK-DLI--DFFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLENL  270 (350)
Q Consensus       196 ~~~~r~L~l~~-~~~--~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l  270 (350)
                      ...+++|.+.+ +..  ..+. ...++  +|+.|.+.++..    ....+..+.++++|++|+|++|.++ .+|..++.+
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l----~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  148 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLT--QLHYLYITHTNV----SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCT--TCSEEEEEEECC----EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCC--CCCEEECcCCee----CCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence            35677888873 544  2332 33455  888888877776    3345566777777888888877776 677777777


Q ss_pred             CCCCeeeeeCCCCc-ccchhhhcCc-CCCEEEccCCcCc-ccchhccccccCcEEEeeccCCC
Q 042413          271 YLLKYLKLNIPSLK-CLHSLLCTLL-NLETLEMPSSYID-QSPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       271 ~~L~~L~l~~~~l~-~lP~~i~~l~-~L~~L~l~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                      ++|++|++++|.++ .+|..++.+. +|++|++++|.+. .+|..++.++ |+.|++++|...
T Consensus       149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred             CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence            77888888777776 7777777776 7777777777544 5566666665 666666665443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.39  E-value=6.2e-13  Score=131.94  Aligned_cols=122  Identities=16%  Similarity=0.071  Sum_probs=102.5

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~  298 (350)
                      .++.|.+.++.+    ..+.+..|.++++|++|+|++|.++.+|. .+.+|++|++|+|++|+++.+|+. ++.+++|++
T Consensus        53 ~~~~LdLs~N~i----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           53 STKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             TCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred             CCCEEEeeCCCC----CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence            899999999987    56777889999999999999999998864 689999999999999999999864 699999999


Q ss_pred             EEccCCcCcccch-hccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      |++++|.+..+|. .|+++++|++|++++|..... ..+..+.+|+.|++
T Consensus       129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~  177 (635)
T 4g8a_A          129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEH  177 (635)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCE
T ss_pred             EECCCCcCCCCChhhhhcCcccCeeccccCccccC-CCchhhccchhhhh
Confidence            9999999999987 589999999999999876543 22333444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.38  E-value=1.7e-12  Score=123.84  Aligned_cols=102  Identities=18%  Similarity=0.105  Sum_probs=60.9

Q ss_pred             CCCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCC
Q 042413          196 LANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLY  271 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~  271 (350)
                      +..++.|.+..+.+ ..+  ....++  +|+.|.+.++..    ....+..|.++++|+.|+|++|.++.+|. .+..++
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  136 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLR--HLEILQLSRNHI----RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS  136 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCS--SCCEEECCSSCC----CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCC--CCCEEECCCCcC----CccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence            45667777777666 221  223444  777777777665    34455666677777777777777666654 466667


Q ss_pred             CCCeeeeeCCCCcccch-hhhcCcCCCEEEccC
Q 042413          272 LLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPS  303 (350)
Q Consensus       272 ~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~  303 (350)
                      +|++|++++|.++.+|. .+..+++|++|++++
T Consensus       137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             cCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence            77777777666665544 334444444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.37  E-value=2.7e-12  Score=115.82  Aligned_cols=137  Identities=22%  Similarity=0.254  Sum_probs=106.6

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      ...++.|.+..+.. ..+....++  +|+.|.+.++...    . + +.+..+++|+.|++++|.++.++ .+..+++|+
T Consensus        67 l~~L~~L~L~~n~l~~~~~l~~l~--~L~~L~l~~n~l~----~-~-~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~  137 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIKPLANLK--NLGWLFLDENKVK----D-L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLE  137 (291)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCT--TCCEEECCSSCCC----C-G-GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCC
T ss_pred             CCCCCEEEccCCccCCCcccccCC--CCCEEECCCCcCC----C-C-hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCC
Confidence            46788888888877 444445666  8999999888763    2 2 34888999999999999988774 678889999


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      +|++++|.++.+ +.++.+++|++|++++|.+..+|. +..+++|++|++++|.....+    .+.++++|+.
T Consensus       138 ~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~----~l~~l~~L~~  204 (291)
T 1h6t_A          138 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR----ALAGLKNLDV  204 (291)
T ss_dssp             EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG----GGTTCTTCSE
T ss_pred             EEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh----hhccCCCCCE
Confidence            999999998888 568899999999999998888877 888999999999988665532    2444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.37  E-value=3.5e-12  Score=115.97  Aligned_cols=137  Identities=15%  Similarity=0.138  Sum_probs=108.7

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      ..++++|.+..+.. ..+....++  +|+.|.+.++...    ...  .+..+++|+.|++++|.++.+|. ++.+++|+
T Consensus        84 l~~L~~L~L~~n~l~~~~~~~~l~--~L~~L~l~~n~l~----~~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  154 (308)
T 1h6u_A           84 LTKITELELSGNPLKNVSAIAGLQ--SIKTLDLTSTQIT----DVT--PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQ  154 (308)
T ss_dssp             CCSCCEEECCSCCCSCCGGGTTCT--TCCEEECTTSCCC----CCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCC
T ss_pred             CCCCCEEEccCCcCCCchhhcCCC--CCCEEECCCCCCC----Cch--hhcCCCCCCEEECCCCccCcCcc-ccCCCCcc
Confidence            46788999988877 444455666  9999999888873    222  37889999999999999888776 88899999


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      +|++++|.++.+|. +..+++|+.|++++|.+..+|. +..+++|++|++++|.....+    .+.++++|+.
T Consensus       155 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~----~l~~l~~L~~  221 (308)
T 1h6u_A          155 YLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS----PLANTSNLFI  221 (308)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG----GGTTCTTCCE
T ss_pred             EEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc----cccCCCCCCE
Confidence            99999999988877 8899999999999998888876 888999999999988766543    2444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.37  E-value=1.6e-12  Score=124.55  Aligned_cols=126  Identities=17%  Similarity=0.091  Sum_probs=70.7

Q ss_pred             CCCeeEEEEecCcc-ch--hhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCC
Q 042413          196 LANVKRCFILKDLI-DF--FSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLY  271 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~--~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~  271 (350)
                      +..++.|.+..+.+ ..  .....++  +|+.|.+.++..    ....+..|.++++|+.|+|++|.++.+|.. ++.++
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  147 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLH--HLEVLQLGRNSI----RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS  147 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred             CCCccEEECcCCcCceECHHHcCCCC--CCCEEECCCCcc----CCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence            45677777777766 22  1223444  777777777665    344555666677777777777776666543 56666


Q ss_pred             CCCeeeeeCCCCcccch-hhhcCcCCCEEEccCC-cCcccch-hccccccCcEEEeecc
Q 042413          272 LLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSS-YIDQSPH-DIWMMQKLMHLYFYCI  327 (350)
Q Consensus       272 ~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~-~l~~lP~-~i~~L~~L~~L~l~~~  327 (350)
                      +|++|+|++|.++.+|. .+.++++|+.|++++| .+..+|. .+..+++|++|++++|
T Consensus       148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            77777777766665554 3344444444444443 4444433 2333444444444333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.37  E-value=9e-13  Score=129.48  Aligned_cols=132  Identities=15%  Similarity=0.086  Sum_probs=107.9

Q ss_pred             CCCCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCC
Q 042413          195 SLANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENL  270 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l  270 (350)
                      .+..+++|.+..+.. ..+  ....++  +|++|.+.++..    ....+..|.++++|++|+|++|.++.+| ..++.+
T Consensus        26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (570)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCS--SCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             ccccccEEEccCCccCccChhHhhCCC--CceEEECCCCcC----CccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence            356789999988877 222  234566  999999998876    4566677889999999999999988665 678899


Q ss_pred             CCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcc--cchhccccccCcEEEeeccCCCCC
Q 042413          271 YLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQ--SPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       271 ~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ++|++|++++|.++.+|. .++.+++|++|++++|.+..  +|..++++++|++|++++|.....
T Consensus       100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            999999999999988876 68899999999999997765  788999999999999988866544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.37  E-value=1.1e-12  Score=122.07  Aligned_cols=132  Identities=17%  Similarity=0.120  Sum_probs=109.5

Q ss_pred             CCCCeeEEEEecCcc-chhhcc---CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCC
Q 042413          195 SLANVKRCFILKDLI-DFFSSL---KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLEN  269 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~~~~---~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~  269 (350)
                      .+..++.|.+..+.+ ..+...   .++  +|+.|.+.++.+    ....+..|..+++|+.|+|++|.++.+|. .+..
T Consensus        37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~--~L~~L~L~~N~i----~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  110 (361)
T 2xot_A           37 LPSYTALLDLSHNNLSRLRAEWTPTRLT--NLHSLLLSHNHL----NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD  110 (361)
T ss_dssp             CCTTCSEEECCSSCCCEECTTSSSSCCT--TCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CCCCCCEEECCCCCCCccChhhhhhccc--ccCEEECCCCcC----CccChhhccCCCCCCEEECCCCcCCcCCHHHhCC
Confidence            356688999998887 333322   455  999999999987    55666789999999999999999997764 6889


Q ss_pred             CCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccchhc----cccccCcEEEeeccCCCCC
Q 042413          270 LYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPHDI----WMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       270 l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~~i----~~L~~L~~L~l~~~~~~~~  332 (350)
                      +.+|++|+|++|.+..+ |..+..+++|+.|+|++|.+..+|..+    ..+++|++|++++|.+...
T Consensus       111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            99999999999999977 567899999999999999999999876    5799999999999877654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.36  E-value=5.5e-13  Score=135.03  Aligned_cols=107  Identities=16%  Similarity=0.143  Sum_probs=94.7

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE  300 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~  300 (350)
                      .|+.|.+.++..    ..+ +..+..+++|++|+|++|.++.+|..++.|++|++|+|++|.|+.+|.+++.|.+|++|+
T Consensus       225 ~L~~L~Ls~n~l----~~l-~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          225 LWHALDLSNLQI----FNI-SANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCEEECTTSCC----SCC-CGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             CCcEEECCCCCC----CCC-ChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            899999988886    333 344558999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413          301 MPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       301 l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |++|.+..+|.+|+.|++|++|++++|.+.+.
T Consensus       300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             CCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence            99999999999999999999999999876543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.36  E-value=1.9e-12  Score=126.05  Aligned_cols=103  Identities=17%  Similarity=0.095  Sum_probs=56.0

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETL  299 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L  299 (350)
                      +++.|.+.++..    ....+..|.++++|++|+|++|.++.+ |..++++++|++|++++|.++.+|..  .+++|++|
T Consensus        22 ~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L   95 (520)
T 2z7x_B           22 KTTILNISQNYI----SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHL   95 (520)
T ss_dssp             TCSEEECCSSCC----CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEE
T ss_pred             cccEEECCCCcc----cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEE
Confidence            555555555554    334444555555555555555555543 44555555555555555555555554  55555555


Q ss_pred             EccCCcCcc--cchhccccccCcEEEeeccCC
Q 042413          300 EMPSSYIDQ--SPHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       300 ~l~~~~l~~--lP~~i~~L~~L~~L~l~~~~~  329 (350)
                      ++++|.+..  +|..++++++|++|++++|..
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             eccCCccccccchhhhccCCcceEEEecCccc
Confidence            555554443  345555555555555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.35  E-value=5.9e-12  Score=113.53  Aligned_cols=125  Identities=19%  Similarity=0.167  Sum_probs=94.2

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      ..+++.|.+..+.. ..+....++  +|+.|.+.++...    ..  +.+..+++|+.|++++|.++.+ ..++.+++|+
T Consensus        89 l~~L~~L~l~~n~l~~~~~l~~l~--~L~~L~L~~n~i~----~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~  159 (291)
T 1h6t_A           89 LKNLGWLFLDENKVKDLSSLKDLK--KLKSLSLEHNGIS----DI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLD  159 (291)
T ss_dssp             CTTCCEEECCSSCCCCGGGGTTCT--TCCEEECTTSCCC----CC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCS
T ss_pred             CCCCCEEECCCCcCCCChhhccCC--CCCEEECCCCcCC----CC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCC
Confidence            46678888887776 444455566  8888888887763    22  4567788888888888888776 4677888888


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCC
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~  331 (350)
                      +|++++|.++.+|+ +..+++|+.|++++|.+..+|. +..+++|+.|++++|....
T Consensus       160 ~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          160 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             EEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence            88888888887766 7888888888888888887764 7788888888888775443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.35  E-value=1.7e-12  Score=117.66  Aligned_cols=131  Identities=17%  Similarity=0.171  Sum_probs=96.8

Q ss_pred             CCCeeEEEEecCcc-chh---hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc--CccccCC
Q 042413          196 LANVKRCFILKDLI-DFF---SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ--YPSGLEN  269 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~---~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--lp~~i~~  269 (350)
                      ...+++|.+..+.. ..+   ....++  +|+.|.+.++..    ....+..+..+++|+.|++++|.+..  +|..+..
T Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  173 (306)
T 2z66_A          100 LEQLEHLDFQHSNLKQMSEFSVFLSLR--NLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE  173 (306)
T ss_dssp             CTTCCEEECTTSEEESSTTTTTTTTCT--TCCEEECTTSCC----EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             CCCCCEEECCCCcccccccchhhhhcc--CCCEEECCCCcC----CccchhhcccCcCCCEEECCCCccccccchhHHhh
Confidence            35677777776665 222   233445  888888877765    34455667788888888888888764  7778888


Q ss_pred             CCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCC
Q 042413          270 LYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       270 l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      +++|++|++++|.++.+ |..++.+++|++|++++|.+..+|. .+..+++|++|++++|.....
T Consensus       174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            88888888888888866 5677888888888888887777765 677788888888888866554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.34  E-value=3e-12  Score=120.05  Aligned_cols=131  Identities=15%  Similarity=0.101  Sum_probs=108.1

Q ss_pred             CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCC
Q 042413          196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLY  271 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~  271 (350)
                      ...++++.+..+.. .++.  ...++  +|+.|.+.++..    ....+..|..+++|++|+|++|.++.+| ..++.++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~--~L~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  117 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFR--QVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP  117 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCC--CCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cCCceEEEecCCchhhCChhHhcccc--cCcEEECCCCcc----cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence            36788999988877 4444  23566  999999998876    4566668899999999999999998765 5688999


Q ss_pred             CCCeeeeeCCCCcccchhh-hcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCC
Q 042413          272 LLKYLKLNIPSLKCLHSLL-CTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       272 ~L~~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      +|++|++++|.++.+|..+ +.+++|++|++++|.+..+|. .++.+++|++|++++|.....
T Consensus       118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            9999999999999998875 889999999999998877754 688999999999998866544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.34  E-value=2.5e-12  Score=126.53  Aligned_cols=123  Identities=15%  Similarity=0.058  Sum_probs=93.9

Q ss_pred             eEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeee
Q 042413          200 KRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLK  277 (350)
Q Consensus       200 r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~  277 (350)
                      +++.+.++.. .+|.... +  +++.|.+.++..    ....+..|.++++|++|+|++|.++.+ |..++++++|++|+
T Consensus        34 ~~l~ls~~~L~~ip~~~~-~--~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLP-P--RTKALSLSQNSI----SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             CEEECTTSCCCSCCTTSC-T--TCCEEECCSSCC----CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cEEEcCCCCCccCCCCCC-C--CcCEEECCCCCc----cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            5666666655 4443322 4  888888888876    455667788888888888888888865 56788888888888


Q ss_pred             eeCCCCcccchhhhcCcCCCEEEccCCcCcccc--hhccccccCcEEEeeccCCCC
Q 042413          278 LNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSP--HDIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       278 l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~  331 (350)
                      +++|.++.+|..  .+++|++|++++|.+..+|  ..++++++|++|++++|....
T Consensus       107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            888888888876  7888888888888777654  688888888888888876544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.34  E-value=1.6e-12  Score=128.77  Aligned_cols=123  Identities=15%  Similarity=0.074  Sum_probs=104.8

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~  298 (350)
                      +++.|.+.++..    ....+..|.++++|++|+|++|.++.+ |..++++++|++|++++|.++.+ |..++++++|++
T Consensus        33 ~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  108 (606)
T 3vq2_A           33 STKNIDLSFNPL----KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN  108 (606)
T ss_dssp             TCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred             CcCEEECCCCCc----CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence            999999999987    556667899999999999999999966 56789999999999999999977 788999999999


Q ss_pred             EEccCCcCcccc-hhccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413          299 LEMPSSYIDQSP-HDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       299 L~l~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L  348 (350)
                      |++++|.+..+| ..++++++|++|++++|..... ..|..++++++|++|
T Consensus       109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A          109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHV  158 (606)
T ss_dssp             EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEE
T ss_pred             EEccCCccccccccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEE
Confidence            999999888887 6899999999999999876542 235555556655544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.34  E-value=6.1e-13  Score=107.51  Aligned_cols=122  Identities=16%  Similarity=0.084  Sum_probs=103.7

Q ss_pred             CCCeeEEEEecCccc---hhhc-cCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-CccccCCC
Q 042413          196 LANVKRCFILKDLID---FFSS-LKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSGLENL  270 (350)
Q Consensus       196 ~~~~r~L~l~~~~~~---~~~~-~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l  270 (350)
                      +..++++.+..+...   .+.. ..++  +|+.|.+.++...    ..  ..+..+++|++|++++|.++. +|..++.+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l   87 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFE--ELEFLSTINVGLT----SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC   87 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCT--TCCEEECTTSCCC----CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcC--CCcEEECcCCCCC----Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence            467888998888764   3333 3455  9999999999873    22  678899999999999999996 88888889


Q ss_pred             CCCCeeeeeCCCCcccc--hhhhcCcCCCEEEccCCcCcccch----hccccccCcEEEee
Q 042413          271 YLLKYLKLNIPSLKCLH--SLLCTLLNLETLEMPSSYIDQSPH----DIWMMQKLMHLYFY  325 (350)
Q Consensus       271 ~~L~~L~l~~~~l~~lP--~~i~~l~~L~~L~l~~~~l~~lP~----~i~~L~~L~~L~l~  325 (350)
                      ++|++|++++|.++.+|  ..++.+++|++|++++|.+..+|.    .++.+++|++|+++
T Consensus        88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            99999999999999875  789999999999999999888886    78899999999885

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.34  E-value=2.1e-12  Score=131.72  Aligned_cols=76  Identities=12%  Similarity=0.122  Sum_probs=43.6

Q ss_pred             CCCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcCc-ccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          270 LYLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYID-QSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       270 l~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      +.+|++|++++|.++ .+|.+++.+++|++|++++|.+. .+|..++++++|+.|++++|...+.  .|..+.+|+.|+.
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~--ip~~l~~l~~L~~  708 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR--IPQAMSALTMLTE  708 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC--CCGGGGGCCCCSE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc--CChHHhCCCCCCE
Confidence            345555666666554 55666666666666666666433 5666666666666666666655544  4444444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.33  E-value=1.1e-12  Score=128.50  Aligned_cols=143  Identities=24%  Similarity=0.175  Sum_probs=110.3

Q ss_pred             CCCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCC
Q 042413          196 LANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLY  271 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~  271 (350)
                      +..+++|.+..+.. ..+  ....++  +|++|.+.++..    ....+..|.++++|++|+|++|.++.+|.. ++.++
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   98 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACA--NLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS   98 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCT--TCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred             CCCccEEECcCCccCccChhhhhcCC--cccEEECCCCCc----CccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence            46789999988877 222  234566  999999998876    456667788999999999999998877754 88999


Q ss_pred             CCCeeeeeCCCCcc--cchhhhcCcCCCEEEccCCc-Ccccch-hccccccCcEEEeeccCCCCCCCCccccccccccc
Q 042413          272 LLKYLKLNIPSLKC--LHSLLCTLLNLETLEMPSSY-IDQSPH-DIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFIS  346 (350)
Q Consensus       272 ~L~~L~l~~~~l~~--lP~~i~~l~~L~~L~l~~~~-l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~  346 (350)
                      +|++|++++|.++.  .|..++++++|++|++++|. +..+|. .++.+++|++|++++|...+.  .+..++++++|+
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~  175 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY--QSQSLKSIRDIH  175 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--CTTTTTTCSEEE
T ss_pred             CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc--ChhhhhccccCc
Confidence            99999999998874  46778899999999999984 788874 788899999999988876553  333444444433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.33  E-value=1.1e-12  Score=109.31  Aligned_cols=126  Identities=17%  Similarity=0.090  Sum_probs=107.0

Q ss_pred             CCCCeeEEEEecCcc-chhhcc-CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcccc-CCCC
Q 042413          195 SLANVKRCFILKDLI-DFFSSL-KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGL-ENLY  271 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~~~~-~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~  271 (350)
                      ....++.|.+.++.. .++... ..+  +|+.|.+.++...    ..  ..+..+++|++|++++|.++.+|..+ +.++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~--~L~~L~Ls~N~l~----~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLD--QFDAIDFSDNEIR----KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTT--CCSEEECCSSCCC----EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCC--CCCEEECCCCCCC----cc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            356789999988877 333222 233  8999999999873    23  57889999999999999999888665 8899


Q ss_pred             CCCeeeeeCCCCcccch--hhhcCcCCCEEEccCCcCcccchh----ccccccCcEEEeeccC
Q 042413          272 LLKYLKLNIPSLKCLHS--LLCTLLNLETLEMPSSYIDQSPHD----IWMMQKLMHLYFYCIS  328 (350)
Q Consensus       272 ~L~~L~l~~~~l~~lP~--~i~~l~~L~~L~l~~~~l~~lP~~----i~~L~~L~~L~l~~~~  328 (350)
                      +|++|++++|.++.+|.  .++.+++|++|++++|.+..+|..    ++.+++|+.|++++|.
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99999999999999997  889999999999999999999985    9999999999998874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.32  E-value=2.6e-12  Score=120.45  Aligned_cols=122  Identities=12%  Similarity=0.129  Sum_probs=101.9

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~  298 (350)
                      +++.+.+.++..    ...++..+..+++|++|++++|.++.+| ..++.+++|++|++++|.++.+|+ .++.+++|++
T Consensus        46 ~l~~l~l~~~~l----~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           46 NQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             CCSEEEEESCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CceEEEecCCch----hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            999999998876    5567778899999999999999999776 589999999999999999998765 5799999999


Q ss_pred             EEccCCcCcccchh-ccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413          299 LEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       299 L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L  348 (350)
                      |++++|.+..+|.. ++++++|++|++++|.....  .+..+.++++|+.|
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L  170 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNL  170 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC--CTTTTSSCTTCCEE
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc--ChhhccCCCCCCEE
Confidence            99999999999987 48999999999999877655  22334444444433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.32  E-value=3.8e-12  Score=111.21  Aligned_cols=124  Identities=16%  Similarity=0.168  Sum_probs=57.8

Q ss_pred             CCeeEEEEecCc-c-chhh--ccCCCCCCeeEEEEec-CCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCC
Q 042413          197 ANVKRCFILKDL-I-DFFS--SLKHSDMYLQSFLNHS-SKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLY  271 (350)
Q Consensus       197 ~~~r~L~l~~~~-~-~~~~--~~~~~~~~Lr~L~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~  271 (350)
                      .+++.|.+..+. . .++.  ...++  +|+.|.+.+ +..    ....+..|..+++|+.|++++|.++.+|. ++.+.
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~--~L~~L~l~~~n~l----~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~  127 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLS--KVTHIEIRNTRNL----TYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVY  127 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCT--TCCEEEEEEETTC----CEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCC
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCc--CCcEEECCCCCCe----eEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccc
Confidence            445555555553 3 2221  22334  555555554 443    23333444555555555555555554444 44444


Q ss_pred             CCC---eeeeeCC-CCcccchh-hhcCcCCC-EEEccCCcCcccchhccccccCcEEEeecc
Q 042413          272 LLK---YLKLNIP-SLKCLHSL-LCTLLNLE-TLEMPSSYIDQSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       272 ~L~---~L~l~~~-~l~~lP~~-i~~l~~L~-~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~  327 (350)
                      +|+   +|++++| .++.+|.. +..+++|+ +|++++|.+..+|......++|+.|++++|
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence            444   5555554 44444432 34455555 555555544444443333344444444444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.32  E-value=6.2e-12  Score=104.62  Aligned_cols=107  Identities=18%  Similarity=0.213  Sum_probs=92.8

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~  298 (350)
                      +++.|.+.++..    ....+..+..+++|++|++++|.++.+|.. ++.+++|++|++++|.++.+|.. ++.+++|++
T Consensus        29 ~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           29 SATRLELESNKL----QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             TCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCcEEEeCCCcc----cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence            899999999886    445666788999999999999999988755 68999999999999999988875 588999999


Q ss_pred             EEccCCcCcccchh-ccccccCcEEEeeccCCCC
Q 042413          299 LEMPSSYIDQSPHD-IWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       299 L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~  331 (350)
                      |++++|.+..+|.. +..+++|++|++++|....
T Consensus       105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            99999999999886 4779999999999986544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.32  E-value=4.4e-12  Score=110.76  Aligned_cols=131  Identities=14%  Similarity=0.136  Sum_probs=110.4

Q ss_pred             CCCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCC-CCCCCccchHHHhcCCceeeEEEccC-CCCCcCc-cccC
Q 042413          195 SLANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSK-NNHLNSKDYENFFKRFKYLRVLNLGS-AVLDQYP-SGLE  268 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~lp-~~i~  268 (350)
                      .+..++.|.+..+.. .++.  ...++  +|++|.+.++. .    ..+.+..|.++++|++|++++ |.++.+| ..+.
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~--~L~~L~l~~n~~l----~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~  102 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLP--NISRIYVSIDVTL----QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK  102 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCT--TCCEEEEECCSSC----CEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCC--CCcEEeCCCCCCc----ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence            456899999999887 3333  33566  99999999996 5    456666889999999999998 9999877 5678


Q ss_pred             CCCCCCeeeeeCCCCcccchhhhcCcCCC---EEEccCC-cCcccch-hccccccCc-EEEeeccCCCCC
Q 042413          269 NLYLLKYLKLNIPSLKCLHSLLCTLLNLE---TLEMPSS-YIDQSPH-DIWMMQKLM-HLYFYCISPCTS  332 (350)
Q Consensus       269 ~l~~L~~L~l~~~~l~~lP~~i~~l~~L~---~L~l~~~-~l~~lP~-~i~~L~~L~-~L~l~~~~~~~~  332 (350)
                      .+++|++|++++|.++.+|. ++.+.+|+   +|++++| .+..+|. .+..+++|+ .|++++|.....
T Consensus       103 ~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i  171 (239)
T 2xwt_C          103 ELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV  171 (239)
T ss_dssp             CCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred             CCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence            99999999999999999997 88888888   9999999 9999987 488999999 999998866543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.32  E-value=3.1e-12  Score=108.16  Aligned_cols=106  Identities=19%  Similarity=0.190  Sum_probs=88.2

Q ss_pred             CeeEEEEecCCCCCCCccchH-HHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchh-hhcCcCCC
Q 042413          221 YLQSFLNHSSKNNHLNSKDYE-NFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLE  297 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~  297 (350)
                      +++.|.+.++..    ....+ ..|..+++|++|+|++|.++.+ |..++.+++|++|+|++|.++.+|+. ++.+++|+
T Consensus        30 ~l~~L~l~~n~i----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           30 HTTELLLNDNEL----GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             TCSEEECCSCCC----CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCEEECCCCcC----CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            888999988876    33333 2478899999999999999866 67899999999999999999977654 78899999


Q ss_pred             EEEccCCcCccc-chhccccccCcEEEeeccCCC
Q 042413          298 TLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       298 ~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~  330 (350)
                      +|++++|.+..+ |..+..+++|++|++++|...
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999999977766 668889999999999888543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.31  E-value=2.2e-12  Score=132.50  Aligned_cols=127  Identities=12%  Similarity=0.090  Sum_probs=79.3

Q ss_pred             CCeeEEEEecCcc-c------------------hhhcc---CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEE
Q 042413          197 ANVKRCFILKDLI-D------------------FFSSL---KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLN  254 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~------------------~~~~~---~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  254 (350)
                      .+++.|.+..+.. .                  +|...   .++  +|+.|.+.++..    ....|..+.++++|+.|+
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~--~L~~L~Ls~N~l----~~~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK--DLTDVELYNCPN----MTQLPDFLYDLPELQSLN  521 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT--TCCEEEEESCTT----CCSCCGGGGGCSSCCEEE
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC--CCCEEECcCCCC----CccChHHHhCCCCCCEEE
Confidence            5677777777766 2                  34433   344  777777777765    233445666666666666


Q ss_pred             ccCCC-CCc--CccccCCCC-------CCCeeeeeCCCCcccch--hhhcCcCCCEEEccCCcCcccchhccccccCcEE
Q 042413          255 LGSAV-LDQ--YPSGLENLY-------LLKYLKLNIPSLKCLHS--LLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHL  322 (350)
Q Consensus       255 L~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~l~~lP~--~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L  322 (350)
                      |++|. ++.  +|..++.+.       +|++|++++|.+..+|.  .++++++|++|++++|.+..+| .++.+++|+.|
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L  600 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDL  600 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEE
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEE
Confidence            66665 553  565554444       66666666666666666  6666666666666666555666 56666666666


Q ss_pred             EeeccCCC
Q 042413          323 YFYCISPC  330 (350)
Q Consensus       323 ~l~~~~~~  330 (350)
                      ++++|...
T Consensus       601 ~Ls~N~l~  608 (876)
T 4ecn_A          601 KLDYNQIE  608 (876)
T ss_dssp             ECCSSCCS
T ss_pred             ECcCCccc
Confidence            66666544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.31  E-value=1.7e-12  Score=118.51  Aligned_cols=127  Identities=13%  Similarity=-0.004  Sum_probs=81.6

Q ss_pred             CCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHH-hcCCceeeEEEccCCCCCcCccccCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENF-FKRFKYLRVLNLGSAVLDQYPSGLENLYL  272 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~l~~lp~~i~~l~~  272 (350)
                      ..++.|.+..+.. ..+.  ...++  +|+.|.+.++..    ....+.. +..+++|++|+|++|.++.+|.. ..+++
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l----~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~  192 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRS--RVQYLDLKLNEI----DTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAK  192 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGS--SEEEEECTTSCC----CEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTT
T ss_pred             CCCCEEECCCCCCCCccchhhhccC--CCCEEECCCCCC----CcccHHHHhhccCcCCEEECCCCcCcccccc-ccccc
Confidence            3456666666655 2211  12334  677777766665    2232333 34567777777777777766533 34777


Q ss_pred             CCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCC
Q 042413          273 LKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       273 L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                      |++|++++|.++.+|+.+..+++|+.|++++|.+..+|..+..+++|+.|++++|...
T Consensus       193 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             CCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            7777777777777777777777777777777777777777777777777777776554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.31  E-value=6.3e-12  Score=129.55  Aligned_cols=133  Identities=20%  Similarity=0.159  Sum_probs=108.9

Q ss_pred             CCCCeeEEEEecCcc-ch--hhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCC
Q 042413          195 SLANVKRCFILKDLI-DF--FSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENL  270 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~--~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l  270 (350)
                      .+..+++|.+..+.+ ..  .....++  +|+.|.+.++..   ...+.+..|.++++|++|+|++|.+..+ |..++++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~--~L~~LdLs~n~~---~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l   96 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLE--QLQLLELGSQYT---PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL   96 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCC--SCSEEEECTTCC---CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccc--cCeEEeCCCCCC---ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence            467899999999887 22  2234566  999999998855   2455577899999999999999998855 8899999


Q ss_pred             CCCCeeeeeCCCCcc-cchh--hhcCcCCCEEEccCCcCcccc--hhccccccCcEEEeeccCCCCC
Q 042413          271 YLLKYLKLNIPSLKC-LHSL--LCTLLNLETLEMPSSYIDQSP--HDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       271 ~~L~~L~l~~~~l~~-lP~~--i~~l~~L~~L~l~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ++|++|+|++|.+.. +|..  ++++++|++|++++|.+..++  ..++++++|++|++++|.....
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            999999999999874 5665  889999999999999777663  5799999999999999876554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.31  E-value=3.4e-12  Score=116.48  Aligned_cols=141  Identities=11%  Similarity=0.002  Sum_probs=108.8

Q ss_pred             CCeeEEEEecCccchhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-cccc-CCCCCCC
Q 042413          197 ANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGL-ENLYLLK  274 (350)
Q Consensus       197 ~~~r~L~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i-~~l~~L~  274 (350)
                      ..++.|.+..+.+.......++  +|+.|.+.++..    ....+..+..+++|++|++++|.++.+ |..+ ..+++|+
T Consensus        99 ~~L~~L~l~~n~l~~~~~~~~~--~L~~L~l~~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  172 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKI----TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (317)
T ss_dssp             TTCCEEECCSSCCSEEEECCCS--SCEEEECCSSCC----CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             CCcCEEECCCCccCCcCccccC--CCCEEECCCCCC----CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence            4566666666665222233455  899999988887    445556788899999999999999865 4555 4789999


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      +|++++|.++.+|.. ..+++|++|++++|.+..+|..+..+++|++|++++|.....+   ..+..+++|+.
T Consensus       173 ~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~---~~~~~l~~L~~  241 (317)
T 3o53_A          173 HLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE---KALRFSQNLEH  241 (317)
T ss_dssp             EEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC---TTCCCCTTCCE
T ss_pred             EEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh---hHhhcCCCCCE
Confidence            999999999988754 4599999999999999999999999999999999999776543   34444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.31  E-value=6.5e-12  Score=119.81  Aligned_cols=130  Identities=22%  Similarity=0.173  Sum_probs=92.6

Q ss_pred             CCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL  273 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L  273 (350)
                      .+++.|.+..+.+ ..+.  ...++  +|+.|.+.++..   .....+..|.++++|+.|+|++|.++.+| .+..+++|
T Consensus       136 ~~L~~L~L~~N~i~~~~~~~~~~l~--~L~~L~l~~~~~---l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L  209 (440)
T 3zyj_A          136 SKLKELWLRNNPIESIPSYAFNRIP--SLRRLDLGELKR---LSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKL  209 (440)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCT--TCCEEECCCCTT---CCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSC
T ss_pred             ccCceeeCCCCcccccCHHHhhhCc--ccCEeCCCCCCC---cceeCcchhhcccccCeecCCCCcCcccc-ccCCCccc
Confidence            4566666666555 2222  22334  666666665433   23444556778888888888888888887 47788888


Q ss_pred             CeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccc-hhccccccCcEEEeeccCCCCC
Q 042413          274 KYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSP-HDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       274 ~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ++|+|++|.++.+ |..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.....
T Consensus       210 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence            8888888888866 667788888888888888777764 4678888899999988876655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.31  E-value=2.2e-12  Score=116.85  Aligned_cols=130  Identities=18%  Similarity=0.148  Sum_probs=96.3

Q ss_pred             CCeeEEEEecCcc-chhh-ccCCCCCCeeEEEEecCCCCCCCccchH-HHhcCCceeeEEEccCCCCC-cCccccCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYE-NFFKRFKYLRVLNLGSAVLD-QYPSGLENLYL  272 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~  272 (350)
                      ..+++|.+..+.. ..+. ...++  +|+.|.+.++..    ..... ..+..+++|++|++++|.+. ..|..++.+++
T Consensus        78 ~~L~~L~Ls~n~i~~l~~~~~~l~--~L~~L~l~~n~l----~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  151 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMSSNFLGLE--QLEHLDFQHSNL----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS  151 (306)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCT--TCCEEECTTSEE----ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT
T ss_pred             cccCEEECCCCccccChhhcCCCC--CCCEEECCCCcc----cccccchhhhhccCCCEEECCCCcCCccchhhcccCcC
Confidence            4566666666655 2222 23455  777777777665    22222 46778888999999988877 44566788899


Q ss_pred             CCeeeeeCCCCcc--cchhhhcCcCCCEEEccCCcCccc-chhccccccCcEEEeeccCCCCC
Q 042413          273 LKYLKLNIPSLKC--LHSLLCTLLNLETLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       273 L~~L~l~~~~l~~--lP~~i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |++|++++|.+..  +|..++.+++|++|++++|.+..+ |..+..+++|++|++++|.....
T Consensus       152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  214 (306)
T 2z66_A          152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL  214 (306)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence            9999999988874  788888999999999999987777 56788899999999988876654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.31  E-value=4.4e-12  Score=121.40  Aligned_cols=88  Identities=19%  Similarity=0.186  Sum_probs=44.9

Q ss_pred             hcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCccc-chhccccccCcE
Q 042413          244 FKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQS-PHDIWMMQKLMH  321 (350)
Q Consensus       244 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L~~  321 (350)
                      |..+++|+.|+|++|.++.+| .+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..+ |..+..+++|+.
T Consensus       192 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  270 (452)
T 3zyi_A          192 FEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE  270 (452)
T ss_dssp             TTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence            334444444444444444443 244455555555555555533 44455555555555555544444 334555666666


Q ss_pred             EEeeccCCCCC
Q 042413          322 LYFYCISPCTS  332 (350)
Q Consensus       322 L~l~~~~~~~~  332 (350)
                      |++++|.....
T Consensus       271 L~L~~N~l~~~  281 (452)
T 3zyi_A          271 LNLAHNNLSSL  281 (452)
T ss_dssp             EECCSSCCSCC
T ss_pred             EECCCCcCCcc
Confidence            66666554433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.31  E-value=3.3e-12  Score=123.54  Aligned_cols=104  Identities=13%  Similarity=-0.004  Sum_probs=57.8

Q ss_pred             CeeEEEEecCCCCCCCccchHHHh-cCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFF-KRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETL  299 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L  299 (350)
                      +|+.|.+.++..    ....+..+ ..+++|+.|+|++|.++.+|. ...+++|++|+|++|.++.+|+.++.+++|+.|
T Consensus       145 ~L~~L~Ls~N~l----~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L  219 (487)
T 3oja_A          145 RVQYLDLKLNEI----DTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI  219 (487)
T ss_dssp             SEEEEECTTSCC----CEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEE
T ss_pred             CCCEEECCCCCC----CCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEE
Confidence            555555555554    22222333 245556666666666554443 224556666666666666665556666666666


Q ss_pred             EccCCcCcccchhccccccCcEEEeeccCC
Q 042413          300 EMPSSYIDQSPHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       300 ~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~  329 (350)
                      ++++|.+..+|..++.+++|+.|++++|..
T Consensus       220 ~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             ECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             EecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence            666665555666666666666666655543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.31  E-value=5.4e-12  Score=115.73  Aligned_cols=126  Identities=17%  Similarity=0.121  Sum_probs=73.2

Q ss_pred             CCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413          197 ANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL  273 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L  273 (350)
                      ..++.|.+..+.+ ..+  ....++  +|+.|.+.++..    ....+..+.++++|++|++++|.++.+|..+.  ++|
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L  125 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQ--HLYALVLVNNKI----SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL  125 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCC----CEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCC--CCcEEECCCCcc----CccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence            4566666666555 221  122344  666666666654    33445556666666666666666666665554  566


Q ss_pred             CeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCc---ccchhccccccCcEEEeeccCCCC
Q 042413          274 KYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYID---QSPHDIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       274 ~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~---~lP~~i~~L~~L~~L~l~~~~~~~  331 (350)
                      ++|++++|.+..+|.. ++.+++|++|++++|.+.   ..|..+..+ +|++|++++|....
T Consensus       126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            6666666666666543 566666666666666543   334455555 66666666665444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.31  E-value=1.2e-11  Score=126.97  Aligned_cols=122  Identities=13%  Similarity=0.120  Sum_probs=87.6

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCC--------CCCCeeeeeCCCCcccchhhh-
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENL--------YLLKYLKLNIPSLKCLHSLLC-  291 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l--------~~L~~L~l~~~~l~~lP~~i~-  291 (350)
                      +|+.|.+.++..    ..++...+..+++|+.|+|++|.++.+|..+...        ++|++|+|++|.++.+|..+. 
T Consensus       674 ~L~~L~Ls~N~L----~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~  749 (876)
T 4ecn_A          674 NASTVTLSYNEI----QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA  749 (876)
T ss_dssp             CEEEEECCSSCC----CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred             CcCEEEccCCcC----CccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence            677777777665    3455556667888888888888888777765543        278888888888888888876 


Q ss_pred             -cCcCCCEEEccCCcCcccchhccccccCcEEEeeccC------CCCCCCCccccccccccccc
Q 042413          292 -TLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCIS------PCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       292 -~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~------~~~~~~~~~~l~~L~~L~~L  348 (350)
                       .+++|+.|++++|.+..+|..++.+++|+.|++++|.      ..+.  .|..+.++++|+.|
T Consensus       750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~--ip~~l~~L~~L~~L  811 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ--WPTGITTCPSLIQL  811 (876)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC--CCTTGGGCSSCCEE
T ss_pred             ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccccc--ChHHHhcCCCCCEE
Confidence             8888888888888777788888888888888887632      2222  45555555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.30  E-value=9.6e-12  Score=124.22  Aligned_cols=122  Identities=17%  Similarity=0.136  Sum_probs=84.9

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCC--------CCCCeeeeeCCCCcccchhhh-
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENL--------YLLKYLKLNIPSLKCLHSLLC-  291 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l--------~~L~~L~l~~~~l~~lP~~i~-  291 (350)
                      +|+.|.+.++..    ..++...+..+++|+.|+|++|.++.+|..+...        ++|++|++++|.++.+|..+. 
T Consensus       434 ~L~~L~Ls~N~l----~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  509 (636)
T 4eco_A          434 NVSSINLSNNQI----SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA  509 (636)
T ss_dssp             CEEEEECCSSCC----CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred             CCCEEECcCCcc----CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence            777777777765    3455566677788888888888877777654432        278888888888888887776 


Q ss_pred             -cCcCCCEEEccCCcCcccchhccccccCcEEEeeccC------CCCCCCCccccccccccccc
Q 042413          292 -TLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCIS------PCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       292 -~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~------~~~~~~~~~~l~~L~~L~~L  348 (350)
                       .+++|++|++++|.+..+|..++++++|+.|++++|.      ..+.  .|..+.++++|+.|
T Consensus       510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~--~p~~l~~l~~L~~L  571 (636)
T 4eco_A          510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE--WPEGITLCPSLTQL  571 (636)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCC--CCTTGGGCSSCCEE
T ss_pred             ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccccc--ChHHHhcCCCCCEE
Confidence             7888888888888777788888888888888885432      2222  44455555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.30  E-value=5.5e-12  Score=120.49  Aligned_cols=133  Identities=20%  Similarity=0.118  Sum_probs=109.1

Q ss_pred             CCCCeeEEEEecCcc-ch-h-hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCC
Q 042413          195 SLANVKRCFILKDLI-DF-F-SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENL  270 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~-~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l  270 (350)
                      .+..+++|.+..+.+ .. + ....++  +|++|.+.++..   .....+..|.++++|++|+|++|.++.+ |..++++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~~---~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  102 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQ--DLQFLKVEQQTP---GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL  102 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCT--TCCEEECCCCST---TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred             CCCccCEEEecCCccCcCChhHhccCc--cccEEECcCCcc---cceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence            357899999998887 22 2 234566  999999999876   2345567789999999999999998855 7889999


Q ss_pred             CCCCeeeeeCCCCcc-cchh--hhcCcCCCEEEccCCcCccc-chh-ccccccCcEEEeeccCCCCC
Q 042413          271 YLLKYLKLNIPSLKC-LHSL--LCTLLNLETLEMPSSYIDQS-PHD-IWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       271 ~~L~~L~l~~~~l~~-lP~~--i~~l~~L~~L~l~~~~l~~l-P~~-i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ++|++|++++|.++. +|..  ++.+++|++|++++|.+..+ |.. ++.+++|++|++++|.....
T Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A          103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            999999999999984 5555  88999999999999988777 555 88999999999999876554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.30  E-value=4.8e-12  Score=117.11  Aligned_cols=122  Identities=18%  Similarity=0.110  Sum_probs=101.4

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~  298 (350)
                      +++.|.+.++..    ....+..+.++++|+.|++++|.++.+ |..++++++|++|++++|.++.+|.. ++.+++|++
T Consensus        53 ~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           53 AVKSLDLSNNRI----TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred             cCcEEECCCCcC----cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence            899999999887    456666889999999999999999966 46799999999999999999999887 799999999


Q ss_pred             EEccCCcCcccch--hccccccCcEEEeeccC-CCCCCCCccccccccccccc
Q 042413          299 LEMPSSYIDQSPH--DIWMMQKLMHLYFYCIS-PCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       299 L~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~~L  348 (350)
                      |++++|.+..+|.  .+..+++|++|++++|. ....  .+..+.++++|+.|
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L  179 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI--QRKDFAGLTFLEEL  179 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--CTTTTTTCCEEEEE
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCcccccc--CHHHccCCCCCCEE
Confidence            9999999999987  78899999999999984 3332  22334444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.29  E-value=6.6e-12  Score=120.87  Aligned_cols=129  Identities=18%  Similarity=0.105  Sum_probs=75.3

Q ss_pred             CCCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCC
Q 042413          196 LANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLY  271 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~  271 (350)
                      +..++.|.+..+.+ ..+  ....++  +|+.|.+.++..    ....+..|.++++|++|+|++|.++.+|. .+++++
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  104 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFP--HLEELELNENIV----SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS  104 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCT--TCCEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred             CCCCcEEECCCCccceECHhHccCCC--CCCEEECCCCcc----CEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence            45667777766665 221  223444  677777766654    33445566666667777776666666654 345666


Q ss_pred             CCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccc-hhccccccCcEEEeeccCCC
Q 042413          272 LLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSP-HDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       272 ~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~  330 (350)
                      +|++|++++|.+..+ |..+..+++|++|++++|.+..++ ..+..+++|++|++++|...
T Consensus       105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A          105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            666666666666544 345566666666666666554442 35555666666666555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.29  E-value=6.1e-12  Score=115.26  Aligned_cols=129  Identities=15%  Similarity=0.102  Sum_probs=98.5

Q ss_pred             CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYL  272 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~  272 (350)
                      +..++.|.+..+.+ ..+.  ...++  +|++|.+.++..    ....+..+..+++|++|++++|.++.+|..+.  ++
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~  122 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLK--NLHTLILINNKI----SKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT  122 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEECCSSCC----CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCC--CCCEEECCCCcC----CeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence            46778888887776 3322  33455  888888888776    44556778888889999998888888887665  68


Q ss_pred             CCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCc---ccchhccccccCcEEEeeccCCCCC
Q 042413          273 LKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYID---QSPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       273 L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~---~lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |++|++++|.+..+|. .++.+++|++|++++|.+.   ..|..+..+++|++|++++|.....
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            8888998888887765 4688889999999888664   4566788888999999988866554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.29  E-value=1.7e-12  Score=129.61  Aligned_cols=106  Identities=15%  Similarity=0.212  Sum_probs=66.3

Q ss_pred             CeeEEEEecCC-CCCCCcc-chHHHhcCC------ceeeEEEccCCCCCcCcc--ccCCCCCCCeeeeeCCCCc-ccchh
Q 042413          221 YLQSFLNHSSK-NNHLNSK-DYENFFKRF------KYLRVLNLGSAVLDQYPS--GLENLYLLKYLKLNIPSLK-CLHSL  289 (350)
Q Consensus       221 ~Lr~L~~~~~~-~~~~~~~-~~~~~~~~l------~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~l~-~lP~~  289 (350)
                      +|+.|.+.++. .    .. ..|..+..+      ++|++|++++|.++.+|.  .++.+++|++|++++|.+. .+| .
T Consensus       274 ~L~~L~Ls~n~~l----~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          274 EMQLINVACNRGI----SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             SCCEEECTTCTTS----CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             CCCEEECcCCCCC----ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            55555555554 2    22 334444443      666666666666666666  6666666666666666666 666 6


Q ss_pred             hhcCcCCCEEEccCCcCcccchhcccccc-CcEEEeeccCCCC
Q 042413          290 LCTLLNLETLEMPSSYIDQSPHDIWMMQK-LMHLYFYCISPCT  331 (350)
Q Consensus       290 i~~l~~L~~L~l~~~~l~~lP~~i~~L~~-L~~L~l~~~~~~~  331 (350)
                      ++.+++|++|++++|.+..+|..++.+++ |++|++++|....
T Consensus       349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~  391 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY  391 (636)
T ss_dssp             CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS
T ss_pred             hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc
Confidence            66666677777766666667766777776 7777777665553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.29  E-value=7.9e-12  Score=123.80  Aligned_cols=137  Identities=22%  Similarity=0.245  Sum_probs=107.6

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      ...++.|.+..+.+ ..+....++  +|+.|.+.++...    . + +.+..+++|+.|+|++|.+..+| .+..+++|+
T Consensus        64 l~~L~~L~Ls~N~l~~~~~l~~l~--~L~~L~Ls~N~l~----~-l-~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~  134 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKPLTNLK--NLGWLFLDENKIK----D-L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLE  134 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGGGGGCT--TCCEEECCSSCCC----C-C-TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCS
T ss_pred             CCCCCEEEeeCCCCCCChhhccCC--CCCEEECcCCCCC----C-C-hhhccCCCCCEEEecCCCCCCCc-cccCCCccC
Confidence            46788888888877 444455666  9999999888763    2 2 36788999999999999988775 588899999


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      .|+|++|.+..+ +.++.+++|+.|+|++|.+..++. +..+++|++|++++|.+...    +.+.+|++|+.
T Consensus       135 ~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l----~~l~~l~~L~~  201 (605)
T 1m9s_A          135 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL----RALAGLKNLDV  201 (605)
T ss_dssp             EEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC----GGGTTCTTCSE
T ss_pred             EEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC----hHHccCCCCCE
Confidence            999999999888 568899999999999998888877 88999999999998866553    23444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.29  E-value=1.3e-11  Score=104.43  Aligned_cols=104  Identities=16%  Similarity=0.212  Sum_probs=91.3

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~  298 (350)
                      +++.|.+.++...    . ++..|.++++|+.|+|++|.++.++ ..+..+++|++|+|++|.++.+|+ .++.+++|++
T Consensus        32 ~l~~L~L~~n~i~----~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~  106 (193)
T 2wfh_A           32 DVTELYLDGNQFT----L-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL  106 (193)
T ss_dssp             TCCEEECCSSCCC----S-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             CCCEEECCCCcCc----h-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence            8999999998873    2 3368899999999999999999776 568999999999999999998865 6899999999


Q ss_pred             EEccCCcCcccch-hccccccCcEEEeeccCC
Q 042413          299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~  329 (350)
                      |++++|.+..+|. .+..+++|++|++++|..
T Consensus       107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            9999999999988 478899999999998753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.28  E-value=3.7e-12  Score=107.63  Aligned_cols=98  Identities=17%  Similarity=0.166  Sum_probs=82.4

Q ss_pred             eeeEEEccCCCCCcCccc--cCCCCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEe
Q 042413          249 YLRVLNLGSAVLDQYPSG--LENLYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYF  324 (350)
Q Consensus       249 ~L~~L~L~~~~l~~lp~~--i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l  324 (350)
                      .|+.|++++|.++.+|..  ++.+++|++|+|++|.++.+ |..++.+++|++|++++|.+..+|. .+..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            899999999999988764  88999999999999999977 7789999999999999998888876 4889999999999


Q ss_pred             eccCCCCCCCCccccccccccccc
Q 042413          325 YCISPCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       325 ~~~~~~~~~~~~~~l~~L~~L~~L  348 (350)
                      ++|...+.  .+..+..+++|+.|
T Consensus       110 ~~N~l~~~--~~~~~~~l~~L~~L  131 (192)
T 1w8a_A          110 YDNQISCV--MPGSFEHLNSLTSL  131 (192)
T ss_dssp             CSSCCCEE--CTTSSTTCTTCCEE
T ss_pred             CCCcCCee--CHHHhhcCCCCCEE
Confidence            99987665  34444555555443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.28  E-value=5.2e-12  Score=128.84  Aligned_cols=143  Identities=17%  Similarity=0.111  Sum_probs=87.8

Q ss_pred             CCeeEEEEecCcc--chhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-cCccccCCCCC
Q 042413          197 ANVKRCFILKDLI--DFFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-QYPSGLENLYL  272 (350)
Q Consensus       197 ~~~r~L~l~~~~~--~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~  272 (350)
                      ..++.|.+..+..  ..+. ...++  +|+.|.+.++..    ....+..+..+++|+.|++++|.+. .+|..++.+++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~N~l----~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  467 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCS--ELVSLHLSFNYL----SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT  467 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCT--TCCEEECCSSEE----ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             CCccEEECCCCccccccCHHHhcCC--CCCEEECcCCcc----cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence            3466666665554  2222 22444  677776666654    3344556666777777777777766 56666777777


Q ss_pred             CCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcCc-ccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          273 LKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYID-QSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       273 L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      |++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|...+.  .|..+.++++|+.
T Consensus       468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~  542 (768)
T 3rgz_A          468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN--IPAELGDCRSLIW  542 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE--CCGGGGGCTTCCE
T ss_pred             ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc--CCHHHcCCCCCCE
Confidence            777777777765 56666777777777777777444 6666777777777777776655433  3444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.28  E-value=7.2e-12  Score=116.44  Aligned_cols=109  Identities=21%  Similarity=0.177  Sum_probs=95.7

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhc-CCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCC
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFK-RFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLE  297 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~  297 (350)
                      .++.|.+.++.+    ....+..+. .+++|+.|+|++|.++.++ ..+..+++|++|+|++|.++.+|. .+..+.+|+
T Consensus        40 ~l~~L~Ls~N~l----~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           40 YTALLDLSHNNL----SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE  115 (361)
T ss_dssp             TCSEEECCSSCC----CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCEEECCCCCC----CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence            789999999987    456666676 8999999999999999776 568999999999999999998876 578999999


Q ss_pred             EEEccCCcCccc-chhccccccCcEEEeeccCCCCCC
Q 042413          298 TLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTSK  333 (350)
Q Consensus       298 ~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~  333 (350)
                      +|+|++|.+..+ |..+..+++|++|++++|.....+
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence            999999988887 568999999999999999777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.28  E-value=5.7e-12  Score=124.95  Aligned_cols=141  Identities=15%  Similarity=0.100  Sum_probs=112.2

Q ss_pred             CCeeEEEEecCcc-chhhc--cCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFSS--LKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLYL  272 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~--~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~  272 (350)
                      ..++.+.+..+.. .++..  ..++  +|++|.+.++..    ....+..|..+++|++|+|++|.++.+|. .++.+++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  124 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFR--QVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  124 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCC--CCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCC--CCcEEECCCCCC----CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence            5678888888776 44432  3466  999999998886    55666788999999999999999987764 5689999


Q ss_pred             CCeeeeeCCCCcccchhh-hcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCCCCCcccccccccc
Q 042413          273 LKYLKLNIPSLKCLHSLL-CTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFI  345 (350)
Q Consensus       273 L~~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L  345 (350)
                      |++|+|++|.++.+|+.+ +.+++|++|++++|.+..+|+ .++.+++|++|++++|.....  .+..+++|+.|
T Consensus       125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L  197 (597)
T 3oja_B          125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHA  197 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEE
T ss_pred             CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--Chhhhhhhhhh
Confidence            999999999999998875 899999999999997777765 689999999999999876654  23444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.27  E-value=7.7e-12  Score=105.83  Aligned_cols=98  Identities=16%  Similarity=0.138  Sum_probs=83.2

Q ss_pred             ceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccch-hccccccCcEEEee
Q 042413          248 KYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFY  325 (350)
Q Consensus       248 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~  325 (350)
                      +.|+.|+|++|.++.+|..+..+++|++|+|++|.++.+|. .+..+++|++|++++|.+..+|. .+..+++|++|+++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            57999999999999999999999999999999999998865 58999999999999999988876 68999999999999


Q ss_pred             ccCCCCCCC-Ccccccccccc
Q 042413          326 CISPCTSKN-YSSSLKNLIFI  345 (350)
Q Consensus       326 ~~~~~~~~~-~~~~l~~L~~L  345 (350)
                      +|.....+. .+..+.+|+.|
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L  131 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHL  131 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCCeeChhhhhcCccccEE
Confidence            998776532 23334444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.27  E-value=1.3e-11  Score=110.11  Aligned_cols=108  Identities=18%  Similarity=0.119  Sum_probs=60.5

Q ss_pred             CCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENLYL  272 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~  272 (350)
                      ..++.|.+..+.. ..+.  ...++  +|++|.+.++..    ....+..+.++++|+.|++++|.+..++. .++.+++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  125 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLS--HLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCT--TCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             cCCcEEECCCCcCCccCHHHccCCc--CCCEEECCCCcc----CccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence            4566666666554 2221  22334  666666666654    33444455666666666666666554443 4556666


Q ss_pred             CCeeeeeCCCCcc--cchhhhcCcCCCEEEccCCcCcccc
Q 042413          273 LKYLKLNIPSLKC--LHSLLCTLLNLETLEMPSSYIDQSP  310 (350)
Q Consensus       273 L~~L~l~~~~l~~--lP~~i~~l~~L~~L~l~~~~l~~lP  310 (350)
                      |++|++++|.+..  +|..++.+++|++|++++|.+..+|
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            6666666666553  4556666666666666666555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.27  E-value=9.5e-12  Score=123.33  Aligned_cols=125  Identities=16%  Similarity=0.129  Sum_probs=80.5

Q ss_pred             CCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccc-cCCCCC
Q 042413          197 ANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSG-LENLYL  272 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~  272 (350)
                      ..++.|.+..+.+ ..+  ....++  +|++|.+.++..    ...++..|.++++|++|+|++|.++.+|.. ++.+++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  148 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAH--TIQKLYMGFNAI----RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK  148 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCC--CCCEEECCCCcC----CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCC
Confidence            4567777766665 222  223444  777777777665    345555667777777777777777766655 367777


Q ss_pred             CCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCC
Q 042413          273 LKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       273 L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~  329 (350)
                      |++|++++|.+..+|+ .++.+++|++|++++|.+..+|  ++.+++|++|++++|..
T Consensus       149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred             CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcc
Confidence            7777777777765543 4677777777777777666664  44566677777766543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.27  E-value=1.4e-11  Score=121.96  Aligned_cols=126  Identities=20%  Similarity=0.170  Sum_probs=105.0

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      ...+++|.+..+.+ .++....++  +|+.|.+.++...    ..  +.+..+++|+.|+|++|.++.+ ..++.+++|+
T Consensus        86 l~~L~~L~Ls~N~l~~l~~l~~l~--~L~~L~Ls~N~l~----~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~  156 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKDLSSLKDLK--KLKSLSLEHNGIS----DI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLD  156 (605)
T ss_dssp             CTTCCEEECCSSCCCCCTTSTTCT--TCCEEECTTSCCC----CC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCS
T ss_pred             CCCCCEEECcCCCCCCChhhccCC--CCCEEEecCCCCC----CC--ccccCCCccCEEECCCCccCCc-hhhcccCCCC
Confidence            46789999998887 455555666  9999999988873    22  4578899999999999999887 5788999999


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      .|+|++|.+..+++ +..+++|+.|+|++|.+..+| .+..+++|+.|++++|.....
T Consensus       157 ~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          157 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred             EEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence            99999999998877 899999999999999888886 588999999999998865543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.27  E-value=2.7e-11  Score=111.55  Aligned_cols=124  Identities=18%  Similarity=0.112  Sum_probs=68.1

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY  275 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~  275 (350)
                      ..+++|.+..+.. ..+....++  +|++|.+.++...    ..  +.+..+++|++|++++|.++.+|. +..+++|++
T Consensus        66 ~~L~~L~l~~n~i~~~~~~~~l~--~L~~L~L~~n~i~----~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~  136 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDISPLSNLV--KLTNLYIGTNKIT----DI--SALQNLTNLRELYLNEDNISDISP-LANLTKMYS  136 (347)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCT--TCCEEECCSSCCC----CC--GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred             CCccEEEccCCccccchhhhcCC--cCCEEEccCCccc----Cc--hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence            4555566555544 333333444  6666666555442    11  235556666666666666655554 555666666


Q ss_pred             eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCC
Q 042413          276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                      |++++|.....++.++.+++|++|++++|.+..++. +..+++|++|++++|...
T Consensus       137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred             EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc
Confidence            666665433223335666666666666665555554 566666666666665443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.27  E-value=1.9e-11  Score=119.66  Aligned_cols=142  Identities=11%  Similarity=0.151  Sum_probs=102.4

Q ss_pred             CCeeEEEEecCccc--hhh----ccCCCCCCeeEEEEecCCCCCCCccch--HHHhcCCceeeEEEccCCCCCcCccccC
Q 042413          197 ANVKRCFILKDLID--FFS----SLKHSDMYLQSFLNHSSKNNHLNSKDY--ENFFKRFKYLRVLNLGSAVLDQYPSGLE  268 (350)
Q Consensus       197 ~~~r~L~l~~~~~~--~~~----~~~~~~~~Lr~L~~~~~~~~~~~~~~~--~~~~~~l~~L~~L~L~~~~l~~lp~~i~  268 (350)
                      ..++.|.+..+...  .+.    ...++  +|+.|.+.++..    ....  ...+..+++|++|++++|.++.+|..++
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~--~L~~L~Ls~N~l----~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  407 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKNSACKGAWP--SLQTLVLSQNHL----RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ  407 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHTCTTSST--TCCEEECTTSCC----CCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCC
T ss_pred             ccccEEEccCCccccccccchhhhhccc--cCcEEEccCCcc----cccccchhhhhcCCCCCEEECCCCCCccCChhhc
Confidence            45667777666652  211    22445  888888888776    2232  2568889999999999999999999888


Q ss_pred             CCCCCCeeeeeCCCCcccchhhh------------------cCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCC
Q 042413          269 NLYLLKYLKLNIPSLKCLHSLLC------------------TLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       269 ~l~~L~~L~l~~~~l~~lP~~i~------------------~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                      .+++|++|++++|.++.+|..+.                  .+++|++|++++|.+..+|. .+.+++|+.|++++|...
T Consensus       408 ~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~  486 (549)
T 2z81_A          408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLK  486 (549)
T ss_dssp             CCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCC
T ss_pred             ccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccC
Confidence            89999999999988877765432                  57788888888888888887 567888999999888776


Q ss_pred             CCCCCcccccccccccc
Q 042413          331 TSKNYSSSLKNLIFISA  347 (350)
Q Consensus       331 ~~~~~~~~l~~L~~L~~  347 (350)
                      +.+  +..+.++++|+.
T Consensus       487 ~~~--~~~~~~l~~L~~  501 (549)
T 2z81_A          487 SVP--DGIFDRLTSLQK  501 (549)
T ss_dssp             CCC--TTGGGGCTTCCE
T ss_pred             CcC--HHHHhcCcccCE
Confidence            652  233444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.25  E-value=1.9e-11  Score=111.97  Aligned_cols=144  Identities=15%  Similarity=0.065  Sum_probs=83.7

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLK  274 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~  274 (350)
                      .+++.|.+..+.. .++... .+  +|+.|.+.++..    ....+..+..+++|+.|++++|.++.++ ..+..+++|+
T Consensus       171 ~~L~~L~l~~n~l~~l~~~~-~~--~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  243 (330)
T 1xku_A          171 KKLSYIRIADTNITTIPQGL-PP--SLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR  243 (330)
T ss_dssp             TTCCEEECCSSCCCSCCSSC-CT--TCSEEECTTSCC----CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             CCcCEEECCCCccccCCccc-cc--cCCEEECCCCcC----CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence            4455555555554 222211 13  666666666654    3344456667777777777777766544 3566677777


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchh-cc------ccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHD-IW------MMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~-i~------~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      +|++++|.+..+|..+..+++|++|++++|.+..+|.. +.      ...+|+.|++++|........+..+..+.+|+.
T Consensus       244 ~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~  323 (330)
T 1xku_A          244 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  323 (330)
T ss_dssp             EEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             EEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence            77777777777777777777777777777766666652 21      235666777766654332122334444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.25  E-value=1.1e-11  Score=119.17  Aligned_cols=108  Identities=19%  Similarity=0.119  Sum_probs=95.8

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~  298 (350)
                      +++.|.+.++..    ....+..|.++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|.. ++.+++|++
T Consensus        33 ~l~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  108 (477)
T 2id5_A           33 ETRLLDLGKNRI----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK  108 (477)
T ss_dssp             TCSEEECCSSCC----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred             CCcEEECCCCcc----ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence            899999999987    556677899999999999999999965 78899999999999999999999875 589999999


Q ss_pred             EEccCCcCccc-chhccccccCcEEEeeccCCCCC
Q 042413          299 LEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       299 L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |++++|.+..+ |..+..+++|++|++++|.....
T Consensus       109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  143 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI  143 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred             EECCCCccccCChhHccccccCCEEECCCCcccee
Confidence            99999977776 55899999999999999876544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.24  E-value=5.6e-12  Score=121.95  Aligned_cols=141  Identities=11%  Similarity=-0.004  Sum_probs=112.8

Q ss_pred             CCeeEEEEecCccchhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-CccccC-CCCCCC
Q 042413          197 ANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSGLE-NLYLLK  274 (350)
Q Consensus       197 ~~~r~L~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~-~l~~L~  274 (350)
                      ..++.|.+..+.+.......++  +|+.|.+.++..    ....+..+..+++|+.|+|++|.++. .|..+. .+++|+
T Consensus        99 ~~L~~L~L~~N~l~~~~~~~l~--~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKI----TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             TTCCEEECCSSCCCCEEECCCS--SCEEEECCSSCC----CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             CCcCEEECcCCcCCCCCccccC--CCCEEECCCCCC----CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence            5678888888777333333456  999999999987    45666778889999999999999985 566665 799999


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCccccccccc
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIF  344 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~  344 (350)
                      +|+|++|.++.+|. ...+++|++|++++|.+..+|+.++.+++|+.|++++|.....+..+..+++|+.
T Consensus       173 ~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~  241 (487)
T 3oja_A          173 HLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH  241 (487)
T ss_dssp             EEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred             EEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCE
Confidence            99999999998876 4469999999999999999999999999999999999977754433333333433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.24  E-value=1.7e-11  Score=117.05  Aligned_cols=107  Identities=18%  Similarity=0.138  Sum_probs=59.5

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~  298 (350)
                      +++.|.+.++..    ....+..+..+++|+.|++++|.++.+ |..++.+++|++|++++|.++.+ |..++.+++|++
T Consensus       276 ~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  351 (455)
T 3v47_A          276 GVKTCDLSKSKI----FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV  351 (455)
T ss_dssp             CCCEEECCSSCC----CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred             CceEEEecCccc----cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence            455555555443    233444555566666666666665533 34555666666666666665544 344555666666


Q ss_pred             EEccCCcCccc-chhccccccCcEEEeeccCCCC
Q 042413          299 LEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       299 L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~  331 (350)
                      |++++|.+..+ |..++.+++|++|++++|....
T Consensus       352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EECCCCcccccChhhccccccccEEECCCCcccc
Confidence            66666655544 4455566666666666555444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.24  E-value=1.2e-11  Score=124.29  Aligned_cols=132  Identities=17%  Similarity=0.100  Sum_probs=110.8

Q ss_pred             CCCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc-ccCCC
Q 042413          195 SLANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS-GLENL  270 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l  270 (350)
                      .+.++++|.+..+.. ..+.  ...++  +|++|.+.++..    ....+..|.++++|++|+|++|.++.+|. .++++
T Consensus        23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l   96 (680)
T 1ziw_A           23 LPTNITVLNLTHNQLRRLPAANFTRYS--QLTSLDVGFNTI----SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC   96 (680)
T ss_dssp             SCTTCSEEECCSSCCCCCCGGGGGGGT--TCSEEECCSSCC----CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCCcEEECCCCCCCCcCHHHHhCCC--cCcEEECCCCcc----CccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence            357899999998877 3332  34566  999999998876    45667888999999999999999998886 58999


Q ss_pred             CCCCeeeeeCCCCcccc-hhhhcCcCCCEEEccCCcCccc-chhccccccCcEEEeeccCCCCC
Q 042413          271 YLLKYLKLNIPSLKCLH-SLLCTLLNLETLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       271 ~~L~~L~l~~~~l~~lP-~~i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ++|++|++++|.+..+| ..++++++|++|++++|.+... |..++++++|++|++++|.....
T Consensus        97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            99999999999999886 5789999999999999976655 55788999999999999876554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.24  E-value=1.1e-11  Score=124.43  Aligned_cols=130  Identities=15%  Similarity=0.068  Sum_probs=86.4

Q ss_pred             CCeeEEEEecCcc-ch-hh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCC
Q 042413          197 ANVKRCFILKDLI-DF-FS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYL  272 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~-~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~  272 (350)
                      ..+++|.+..+.. .. +. ...++  +|++|.+.++..    ...++..|.++++|++|+|++|.++.+| ..++++++
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l----~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  122 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLP--MLKVLNLQHNEL----SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN  122 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCT--TCCEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred             CcCcEEECCCCccCccCHHHHhccc--CcCEEECCCCcc----CccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence            5677777776655 21 11 22455  777777777765    3444456777778888888877777665 56777778


Q ss_pred             CCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccchh-c--cccccCcEEEeeccCCCCC
Q 042413          273 LKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPHD-I--WMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       273 L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~~-i--~~L~~L~~L~l~~~~~~~~  332 (350)
                      |++|++++|.+..+ |..++++++|++|++++|.+..+|.. +  ..+++|++|++++|.....
T Consensus       123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  186 (680)
T 1ziw_A          123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF  186 (680)
T ss_dssp             CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred             CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence            88888887777644 45567777888888877776666542 2  3456777888777755444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.24  E-value=9.4e-12  Score=123.30  Aligned_cols=132  Identities=16%  Similarity=-0.004  Sum_probs=104.5

Q ss_pred             CCCCeeEEEEecCcc-chh--hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCC
Q 042413          195 SLANVKRCFILKDLI-DFF--SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENL  270 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~--~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l  270 (350)
                      .+..+++|.+..+.+ ..+  ....++  +|++|.+.++..    ....+..|.++++|++|+|++|.++.+ |..++++
T Consensus        31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  104 (606)
T 3t6q_A           31 LPNSTECLEFSFNVLPTIQNTTFSRLI--NLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP  104 (606)
T ss_dssp             SCTTCCEEECTTCCCSEECTTTSTTCT--TCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred             CCCcCcEEEccCCccCcCChhHhccCc--cceEEECCCCcc----ceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence            456789999998887 332  233556  999999998876    456677889999999999999998754 6788999


Q ss_pred             CCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccc-hhccccccCcEEEeeccCCCCC
Q 042413          271 YLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSP-HDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       271 ~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ++|++|++++|.++.+ |..++.+++|++|++++|.+..++ +.+..+++|++|++++|.....
T Consensus       105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  168 (606)
T 3t6q_A          105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL  168 (606)
T ss_dssp             TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred             ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence            9999999999999877 567889999999999999877763 3344588999999988866544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=1.2e-11  Score=121.69  Aligned_cols=97  Identities=24%  Similarity=0.231  Sum_probs=84.4

Q ss_pred             eeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccC
Q 042413          249 YLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCIS  328 (350)
Q Consensus       249 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~  328 (350)
                      .|++|+|++|.++.+|. ++.+++|++|+|++|.++.+|..++.+++|++|+|++|.+..+| .++.+++|+.|++++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            47789999999999997 99999999999999999999999999999999999999999999 89999999999999998


Q ss_pred             CCCCCCCccccccccccccc
Q 042413          329 PCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       329 ~~~~~~~~~~l~~L~~L~~L  348 (350)
                      ..... .|..+.+|++|+.|
T Consensus       520 l~~~~-~p~~l~~l~~L~~L  538 (567)
T 1dce_A          520 LQQSA-AIQPLVSCPRLVLL  538 (567)
T ss_dssp             CCSSS-TTGGGGGCTTCCEE
T ss_pred             CCCCC-CcHHHhcCCCCCEE
Confidence            76651 14555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.23  E-value=1.8e-11  Score=120.15  Aligned_cols=123  Identities=16%  Similarity=0.096  Sum_probs=103.1

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccc-hhhhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLH-SLLCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP-~~i~~l~~L~~  298 (350)
                      +++.|.+.++..    ....+..|.++++|++|+|++|.++.++ ..++++++|++|++++|.++.+| ..++.+++|++
T Consensus        29 ~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           29 STKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             SCCEEECCSCCC----CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             cccEEEccCCcc----CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence            899999999987    4566678999999999999999999775 67899999999999999999776 67899999999


Q ss_pred             EEccCCcCcccch-hccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413          299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L  348 (350)
                      |++++|.+..+|. .++++++|++|++++|..... ..|..++++++|++|
T Consensus       105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L  154 (570)
T 2z63_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHL  154 (570)
T ss_dssp             EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccccccccccCCCccccccccccEEecCCCcccee-cChhhhcccCCCCEE
Confidence            9999999999887 799999999999999866542 234455555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.22  E-value=6e-11  Score=115.36  Aligned_cols=144  Identities=13%  Similarity=0.135  Sum_probs=107.5

Q ss_pred             CCCeeEEEEecCccc--hhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-Cccc-cCCC
Q 042413          196 LANVKRCFILKDLID--FFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSG-LENL  270 (350)
Q Consensus       196 ~~~~r~L~l~~~~~~--~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~-i~~l  270 (350)
                      ...+++|.+..+...  .+. ...++  +|+.|.+.++....  ....+..+..+++|+.|++++|.++. +|.. +..+
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~--l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l  398 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLT--ELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT  398 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCS--SCCEEECCSSCCCB--HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred             CCcccEEEeECCccChhhhhhhccCC--CCCEEEccCCccCc--cccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence            456788888887762  233 23555  89999998888731  11344678899999999999999886 8865 7788


Q ss_pred             CCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          271 YLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       271 ~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      ++|++|++++|.++ .+|..+.  ++|++|++++|.+..+|..+..+++|++|++++|.....+..  .+.++++|+.
T Consensus       399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~  472 (520)
T 2z7x_B          399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG--IFDRLTSLQK  472 (520)
T ss_dssp             TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT--TTTTCTTCCE
T ss_pred             ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH--HhccCCcccE
Confidence            99999999999885 5666554  789999999998889999888999999999999877654332  1444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.22  E-value=2e-11  Score=110.86  Aligned_cols=132  Identities=8%  Similarity=-0.050  Sum_probs=96.6

Q ss_pred             CCCeeEEEEecCccch-------hhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc---Cc-
Q 042413          196 LANVKRCFILKDLIDF-------FSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ---YP-  264 (350)
Q Consensus       196 ~~~~r~L~l~~~~~~~-------~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~---lp-  264 (350)
                      ...++.|.+..+....       .....++  +|+.|.+.++..    ...++..+..+++|++|+|++|.+..   ++ 
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  189 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKP--GLKVLSIAQAHS----PAFSCEQVRAFPALTSLDLSDNPGLGERGLMA  189 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCS--CCCEEEEECCSS----CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhcc--CCCEEEeeCCCc----chhhHHHhccCCCCCEEECCCCCCccchhhhH
Confidence            3567778888777621       1112355  888888888876    44566777888889999999888652   33 


Q ss_pred             -cccCCCCCCCeeeeeCCCCcccchh----hhcCcCCCEEEccCCcCccc-chhcccc---ccCcEEEeeccCCCCCC
Q 042413          265 -SGLENLYLLKYLKLNIPSLKCLHSL----LCTLLNLETLEMPSSYIDQS-PHDIWMM---QKLMHLYFYCISPCTSK  333 (350)
Q Consensus       265 -~~i~~l~~L~~L~l~~~~l~~lP~~----i~~l~~L~~L~l~~~~l~~l-P~~i~~L---~~L~~L~l~~~~~~~~~  333 (350)
                       ..++.+++|++|++++|.++.+|..    ++.+++|++|++++|.+..+ |..++.+   ++|++|++++|.....+
T Consensus       190 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          190 ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred             HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence             3346788899999999888776653    46788999999999977776 7777776   58999999888776543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.22  E-value=2.6e-11  Score=124.94  Aligned_cols=130  Identities=16%  Similarity=0.093  Sum_probs=104.8

Q ss_pred             chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC-CCcC-ccccCCCCCCCeeeeeCCCCccc-
Q 042413          210 DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV-LDQY-PSGLENLYLLKYLKLNIPSLKCL-  286 (350)
Q Consensus       210 ~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l-p~~i~~l~~L~~L~l~~~~l~~l-  286 (350)
                      .+|.  ..+  +++.|.+.++..    ....+..|.++++|++|+|++|. +..+ |..++++++|++|+|++|.+..+ 
T Consensus        18 ~vP~--lp~--~l~~LdLs~N~i----~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           18 QVPQ--VLN--TTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH   89 (844)
T ss_dssp             CCCS--SCT--TCCEEEEESCCC----CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred             CCCC--CCC--CcCEEECCCCcC----CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence            4554  345  999999999987    55667789999999999999996 4466 78899999999999999999866 


Q ss_pred             chhhhcCcCCCEEEccCCcCcc-cchh--ccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413          287 HSLLCTLLNLETLEMPSSYIDQ-SPHD--IWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       287 P~~i~~l~~L~~L~l~~~~l~~-lP~~--i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L  348 (350)
                      |..++.+++|++|++++|.+.. +|..  ++++++|++|++++|...... .+..+++|++|++|
T Consensus        90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSI  153 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEE
T ss_pred             HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEE
Confidence            8889999999999999997765 5665  999999999999999776542 12345555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.22  E-value=5.8e-11  Score=108.81  Aligned_cols=103  Identities=15%  Similarity=0.055  Sum_probs=55.3

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETL  299 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L  299 (350)
                      +++.|.+.++..    ....+..|.++++|++|++++|.++.+ |..++.+++|++|++++|.++.+|..+.  ++|++|
T Consensus        55 ~l~~L~l~~n~i----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L  128 (332)
T 2ft3_A           55 DTTLLDLQNNDI----SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL  128 (332)
T ss_dssp             TCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred             CCeEEECCCCcC----CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence            555555555544    233334455555555555555555533 4455555555555555555555555444  455555


Q ss_pred             EccCCcCcccch-hccccccCcEEEeeccCC
Q 042413          300 EMPSSYIDQSPH-DIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       300 ~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~  329 (350)
                      ++++|.+..+|. .+..+++|++|++++|..
T Consensus       129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             ECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             ECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            555555555544 245555555555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.22  E-value=2.2e-11  Score=101.25  Aligned_cols=81  Identities=20%  Similarity=0.302  Sum_probs=40.8

Q ss_pred             ceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCEEEccCCcCcccchh-ccccccCcEEEe
Q 042413          248 KYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYF  324 (350)
Q Consensus       248 ~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l  324 (350)
                      +.|++|+|++|.++.+ |..++.+++|++|+|++|+++.+|..+ +.+++|++|++++|.+..+|.. +..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            4455555555555544 334455555555555555555554432 4455555555555555555443 445555555555


Q ss_pred             eccC
Q 042413          325 YCIS  328 (350)
Q Consensus       325 ~~~~  328 (350)
                      ++|.
T Consensus       113 ~~N~  116 (174)
T 2r9u_A          113 YNNP  116 (174)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            5543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.22  E-value=2.7e-11  Score=110.21  Aligned_cols=86  Identities=22%  Similarity=0.136  Sum_probs=40.6

Q ss_pred             cCCceeeEEEccCCCCCcCc---cc-cCCCCCCCeeeeeCCCCcccc--hhhhcCcCCCEEEccCCcCcccchhcccccc
Q 042413          245 KRFKYLRVLNLGSAVLDQYP---SG-LENLYLLKYLKLNIPSLKCLH--SLLCTLLNLETLEMPSSYIDQSPHDIWMMQK  318 (350)
Q Consensus       245 ~~l~~L~~L~L~~~~l~~lp---~~-i~~l~~L~~L~l~~~~l~~lP--~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~  318 (350)
                      ..+++|+.|+|++|.++.+|   .. +..+++|++|++++|.++..+  ..+..+++|++|++++|.+..+|..+.  ++
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~  275 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK  275 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence            44445555555555444221   11 123445555555555554332  223344555555555555555555444  45


Q ss_pred             CcEEEeeccCCCCC
Q 042413          319 LMHLYFYCISPCTS  332 (350)
Q Consensus       319 L~~L~l~~~~~~~~  332 (350)
                      |++|++++|.....
T Consensus       276 L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          276 LSVLDLSYNRLDRN  289 (312)
T ss_dssp             EEEEECCSSCCCSC
T ss_pred             ceEEECCCCCCCCC
Confidence            55555555544433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.21  E-value=1.7e-11  Score=111.33  Aligned_cols=143  Identities=14%  Similarity=0.035  Sum_probs=99.5

Q ss_pred             CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCcc-ch-HHHhcCCceeeEEEccCCCCCcCccc----
Q 042413          196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSK-DY-ENFFKRFKYLRVLNLGSAVLDQYPSG----  266 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~-~~-~~~~~~l~~L~~L~L~~~~l~~lp~~----  266 (350)
                      ..++++|.+..+.. ..+.  ...++  +|++|.+.++....  .. .. ...+..+++|++|+|++|.++.+|..    
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l  219 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFP--ALTSLDLSDNPGLG--ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL  219 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCT--TCCEEECCSCTTCH--HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCC--CCCEEECCCCCCcc--chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence            45788888888877 2222  22455  88888888887520  00 11 12235788888889988888766542    


Q ss_pred             cCCCCCCCeeeeeCCCCccc-chhhhcC---cCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCccccccc
Q 042413          267 LENLYLLKYLKLNIPSLKCL-HSLLCTL---LNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNL  342 (350)
Q Consensus       267 i~~l~~L~~L~l~~~~l~~l-P~~i~~l---~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L  342 (350)
                      ++.+++|++|++++|.+..+ |+.++.+   ++|++|++++|.+..+|..+.  ++|++|++++|...+.+ .+..+++|
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~-~~~~l~~L  296 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAP-QPDELPEV  296 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCC-CTTSCCCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCc-hhhhCCCc
Confidence            46778888999988888865 7777776   588899998888888888775  68888998888766542 24445555


Q ss_pred             ccc
Q 042413          343 IFI  345 (350)
Q Consensus       343 ~~L  345 (350)
                      +.|
T Consensus       297 ~~L  299 (310)
T 4glp_A          297 DNL  299 (310)
T ss_dssp             SCE
T ss_pred             cEE
Confidence            444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.19  E-value=3.6e-11  Score=109.33  Aligned_cols=106  Identities=15%  Similarity=0.072  Sum_probs=53.5

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc---Ccccc--CCCCCCCeeeeeCCCCcccc---hhh-h
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ---YPSGL--ENLYLLKYLKLNIPSLKCLH---SLL-C  291 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~---lp~~i--~~l~~L~~L~l~~~~l~~lP---~~i-~  291 (350)
                      +|+.|.+.++..    ....+..+..+++|+.|+|++|.+..   +|..+  +.+++|++|++++|.++.+|   ..+ .
T Consensus       150 ~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  225 (312)
T 1wwl_A          150 GLKVLSIAQAHS----LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA  225 (312)
T ss_dssp             TCCEEEEESCSC----CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred             CCcEEEeeCCCC----ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence            555555555554    23333455555555555555555431   23333  55555555555555555332   222 3


Q ss_pred             cCcCCCEEEccCCcCcccc--hhccccccCcEEEeeccCCC
Q 042413          292 TLLNLETLEMPSSYIDQSP--HDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       292 ~l~~L~~L~l~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~  330 (350)
                      .+++|++|++++|.+...+  ..+..+++|++|++++|...
T Consensus       226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            4455666666655554433  23444555666666555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.19  E-value=4.4e-11  Score=106.18  Aligned_cols=105  Identities=19%  Similarity=0.174  Sum_probs=91.3

Q ss_pred             CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcC
Q 042413          216 KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLN  295 (350)
Q Consensus       216 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~  295 (350)
                      .++  +|+.|.+.++...    .. + .+..+++|+.|+|++|.++.+|. ++.+++|++|++++|.++.+|....  .+
T Consensus        39 ~l~--~L~~L~l~~n~i~----~l-~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~  107 (263)
T 1xeu_A           39 ELS--GVQNFNGDNSNIQ----SL-A-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--AC  107 (263)
T ss_dssp             HHT--TCSEEECTTSCCC----CC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SS
T ss_pred             hcC--cCcEEECcCCCcc----cc-h-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--Cc
Confidence            455  9999999998763    22 2 57889999999999999999887 9999999999999999999887444  99


Q ss_pred             CCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413          296 LETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       296 L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |++|++++|.+..+| .++.+++|++|++++|.....
T Consensus       108 L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A          108 LSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             CCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC
T ss_pred             ccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC
Confidence            999999999999886 599999999999999876654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.18  E-value=3.7e-11  Score=99.42  Aligned_cols=81  Identities=20%  Similarity=0.268  Sum_probs=47.7

Q ss_pred             ceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCEEEccCCcCcccchh-ccccccCcEEEe
Q 042413          248 KYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYF  324 (350)
Q Consensus       248 ~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l  324 (350)
                      +.|++|+|++|.++.+ |..++.+++|++|+|++|.++.+|+.. ..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            4556666666666654 344556666666666666666555543 5566666666666666555553 555666666666


Q ss_pred             eccC
Q 042413          325 YCIS  328 (350)
Q Consensus       325 ~~~~  328 (350)
                      ++|.
T Consensus       110 ~~N~  113 (170)
T 3g39_A          110 LNNP  113 (170)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            6554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.18  E-value=3.8e-11  Score=118.89  Aligned_cols=108  Identities=15%  Similarity=0.044  Sum_probs=96.8

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~  298 (350)
                      .++.|.+.++..    ....+..|.++++|++|+|++|.++.+ |..++++++|++|++++|.+..+ |..++.+++|++
T Consensus        34 ~l~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (606)
T 3t6q_A           34 STECLEFSFNVL----PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH  109 (606)
T ss_dssp             TCCEEECTTCCC----SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred             cCcEEEccCCcc----CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence            899999999987    556678899999999999999998854 78899999999999999999866 778999999999


Q ss_pred             EEccCCcCccc-chhccccccCcEEEeeccCCCCC
Q 042413          299 LEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       299 L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |++++|.+..+ |..++++++|++|++++|.....
T Consensus       110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~  144 (606)
T 3t6q_A          110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI  144 (606)
T ss_dssp             EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred             eeccccCcccCCcchhccCCcccEEECCCCccccc
Confidence            99999988887 56899999999999999877653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.18  E-value=1.2e-10  Score=111.75  Aligned_cols=81  Identities=26%  Similarity=0.355  Sum_probs=35.3

Q ss_pred             hcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEE
Q 042413          244 FKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLY  323 (350)
Q Consensus       244 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~  323 (350)
                      +..+++|+.|++++|.++.+|. +..+++|++|++++|.+..+|+ ++.+++|+.|++++|.+..++. ++.+++|+.|+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~  337 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLF  337 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEE
T ss_pred             hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeE
Confidence            4444444444444444444433 4444444444444444444433 3444444444444443333332 33344444444


Q ss_pred             eecc
Q 042413          324 FYCI  327 (350)
Q Consensus       324 l~~~  327 (350)
                      +++|
T Consensus       338 l~~n  341 (466)
T 1o6v_A          338 FYNN  341 (466)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            4433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.17  E-value=1.4e-10  Score=113.91  Aligned_cols=144  Identities=13%  Similarity=0.084  Sum_probs=104.6

Q ss_pred             CCCeeEEEEecCccc--hhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-Cccc-cCCC
Q 042413          196 LANVKRCFILKDLID--FFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSG-LENL  270 (350)
Q Consensus       196 ~~~~r~L~l~~~~~~--~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~-i~~l  270 (350)
                      ...+++|.+..+...  .+. ...++  +|+.|.+.++....  ....+..+..+++|+.|++++|.++. +|.. +..+
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l  427 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLK--RLQTLILQRNGLKN--FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA  427 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCS--SCCEEECCSSCCCB--TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred             CCCceEEECCCCccccchhhhhcccC--CCCEEECCCCCcCC--cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence            456788888887762  232 33555  89999988887631  11334567889999999999999885 7754 6778


Q ss_pred             CCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          271 YLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       271 ~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      ++|++|++++|.++ .+|..+.  ++|++|++++|.+..+|.+++.+++|+.|++++|.....+..  .+..+++|+.
T Consensus       428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~  501 (562)
T 3a79_B          428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG--VFDRLTSLQY  501 (562)
T ss_dssp             TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT--STTTCTTCCC
T ss_pred             ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH--HHhcCCCCCE
Confidence            88999999988885 4555443  689999999998899999888999999999999877654332  1444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.16  E-value=9.4e-11  Score=97.39  Aligned_cols=87  Identities=18%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             CceeeEEEccCCCCCcCcc-ccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchh-ccccccCcEEE
Q 042413          247 FKYLRVLNLGSAVLDQYPS-GLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLY  323 (350)
Q Consensus       247 l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~  323 (350)
                      .++|+.|++++|.++.+|. .++.+++|++|++++|.++.+|.. ++.+++|++|++++|.+..+|.. +..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            3689999999999998875 468999999999999999998876 58999999999999999998875 68899999999


Q ss_pred             eeccCCCCCC
Q 042413          324 FYCISPCTSK  333 (350)
Q Consensus       324 l~~~~~~~~~  333 (350)
                      +++|.....+
T Consensus       107 l~~N~l~~~~  116 (177)
T 2o6r_A          107 LDTNQLKSVP  116 (177)
T ss_dssp             CCSSCCSCCC
T ss_pred             CcCCcceEeC
Confidence            9999776553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.16  E-value=1.3e-10  Score=111.40  Aligned_cols=120  Identities=16%  Similarity=0.105  Sum_probs=59.7

Q ss_pred             CCeeEEEEecCccchhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCee
Q 042413          197 ANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYL  276 (350)
Q Consensus       197 ~~~r~L~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L  276 (350)
                      ..+++|.+..+.........++  +|+.|.+.++...    ..   .+..+++|++|++++|.++.+|  ++.+++|++|
T Consensus        64 ~~L~~L~Ls~n~l~~~~~~~l~--~L~~L~Ls~N~l~----~~---~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L  132 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLDLSQNT--NLTYLACDSNKLT----NL---DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL  132 (457)
T ss_dssp             TTCSEEECCSSCCSCCCCTTCT--TCSEEECCSSCCS----CC---CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred             CCCCEEEccCCcCCeEccccCC--CCCEEECcCCCCc----ee---ecCCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence            3444555544444111122333  5555555554442    11   1445555555555555555443  4555555555


Q ss_pred             eeeCCCCcccchhhhcCcCCCEEEccCC-cCcccchhccccccCcEEEeeccCCCC
Q 042413          277 KLNIPSLKCLHSLLCTLLNLETLEMPSS-YIDQSPHDIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       277 ~l~~~~l~~lP~~i~~l~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~~~~~~  331 (350)
                      ++++|.++.+|  ++.+++|++|++++| .++.+  .++.+++|++|++++|....
T Consensus       133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred             ECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence            55555555543  455555555555555 44444  25556666666666665444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.16  E-value=1.9e-10  Score=105.86  Aligned_cols=138  Identities=15%  Similarity=0.149  Sum_probs=98.3

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY  275 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~  275 (350)
                      ..++.+.+..+.. ..+....++  +|+.|.+.++...    ...+  +..+++|+.|++++|.++.++ .+..+++|++
T Consensus       199 ~~L~~L~l~~n~l~~~~~~~~~~--~L~~L~l~~n~l~----~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~  269 (347)
T 4fmz_A          199 TSLHYFTAYVNQITDITPVANMT--RLNSLKIGNNKIT----DLSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKM  269 (347)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCT--TCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCE
T ss_pred             CccceeecccCCCCCCchhhcCC--cCCEEEccCCccC----CCcc--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCE
Confidence            4556666665555 222234555  8888888877762    2222  778888899999988888764 5788889999


Q ss_pred             eeeeCCCCcccchhhhcCcCCCEEEccCCcCccc-chhccccccCcEEEeeccCCCCCCCCcccccccccc
Q 042413          276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQS-PHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFI  345 (350)
Q Consensus       276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L  345 (350)
                      |++++|.++.+| .+..+++|+.|++++|.+... |..++.+++|++|++++|.....+. ...+++|+.|
T Consensus       270 L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L  338 (347)
T 4fmz_A          270 LNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSA  338 (347)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEE
T ss_pred             EEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhcccee
Confidence            999999888875 478889999999999976654 4578889999999999887665433 2334444433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.16  E-value=8.8e-11  Score=97.14  Aligned_cols=95  Identities=17%  Similarity=0.157  Sum_probs=78.4

Q ss_pred             eeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeec
Q 042413          249 YLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYC  326 (350)
Q Consensus       249 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~  326 (350)
                      ..+.+++++|.++.+|..+.  .+|++|+|++|.++.+ |..++.+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            35789999999999998774  8899999999999988 56689999999999999999999885 58999999999999


Q ss_pred             cCCCCCCC-Ccccccccccc
Q 042413          327 ISPCTSKN-YSSSLKNLIFI  345 (350)
Q Consensus       327 ~~~~~~~~-~~~~l~~L~~L  345 (350)
                      |.+...+. .+..+.+|+.|
T Consensus        88 N~l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEE
T ss_pred             CccCEeCHHHhcCCCCCCEE
Confidence            98776532 23344444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.15  E-value=2.6e-11  Score=119.10  Aligned_cols=116  Identities=13%  Similarity=0.068  Sum_probs=73.2

Q ss_pred             CeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCee
Q 042413          198 NVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYL  276 (350)
Q Consensus       198 ~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L  276 (350)
                      ++++|.+..+.+ .++.  .++  +|+.|.+.+|...    .++ .   .+++|+.|+|++|.++.+|. ++  ++|++|
T Consensus       121 ~L~~L~Ls~N~l~~lp~--~l~--~L~~L~Ls~N~l~----~lp-~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L  185 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE--LPA--LLEYINADNNQLT----MLP-E---LPTSLEVLSVRNNQLTFLPE-LP--ESLEAL  185 (571)
T ss_dssp             TCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCS----CCC-C---CCTTCCEEECCSSCCSCCCC-CC--TTCCEE
T ss_pred             CCCEEECCCCcCCCCCC--cCc--cccEEeCCCCccC----cCC-C---cCCCcCEEECCCCCCCCcch-hh--CCCCEE
Confidence            455555555544 2222  333  6666666666552    122 1   45667777777777777766 55  677777


Q ss_pred             eeeCCCCcccchhhhcCcCC-------CEEEccCCcCcccchhccccccCcEEEeeccCCCC
Q 042413          277 KLNIPSLKCLHSLLCTLLNL-------ETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       277 ~l~~~~l~~lP~~i~~l~~L-------~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~  331 (350)
                      +|++|.|+.+|. +..  +|       ++|++++|.+..+|..++++++|+.|++++|...+
T Consensus       186 ~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          186 DVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             ECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             ECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence            777777777776 544  56       77777777777777777777777777777776544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.14  E-value=1.1e-10  Score=96.92  Aligned_cols=93  Identities=19%  Similarity=0.194  Sum_probs=77.7

Q ss_pred             eEEEccCCCCCcCccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccC
Q 042413          251 RVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCIS  328 (350)
Q Consensus       251 ~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~  328 (350)
                      +.+++++|.++.+|..+.  .+|++|+|++|.++.+ |..++.+++|++|+|++|.+..+|.. +..+++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            689999999999998876  8999999999999988 56789999999999999999999986 5899999999999998


Q ss_pred             CCCCCCCcccccccccccc
Q 042413          329 PCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       329 ~~~~~~~~~~l~~L~~L~~  347 (350)
                      +...+.  ..+.++++|+.
T Consensus        93 l~~l~~--~~~~~l~~L~~  109 (174)
T 2r9u_A           93 LKSIPR--GAFDNLKSLTH  109 (174)
T ss_dssp             CCCCCT--TTTTTCTTCSE
T ss_pred             cceeCH--HHhccccCCCE
Confidence            776533  22444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.14  E-value=1.6e-12  Score=110.29  Aligned_cols=125  Identities=14%  Similarity=0.108  Sum_probs=94.8

Q ss_pred             CeeEEEEecCcc---chh-hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413          198 NVKRCFILKDLI---DFF-SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL  273 (350)
Q Consensus       198 ~~r~L~l~~~~~---~~~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L  273 (350)
                      .++...+.+...   .++ ....++  +|+.|.+.++...    . ++ .+..+++|+.|++++|.++.+|..+..+++|
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~--~L~~L~ls~n~l~----~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L   95 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLK--ACKHLALSTNNIE----K-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTL   95 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTT--TCSEEECSEEEES----C-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred             chheeEeccccCcHhhhhHHHhcCC--CCCEEECCCCCCc----c-cc-ccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence            455555554321   222 233456  8999998887763    2 23 6777888999999999988888877778899


Q ss_pred             CeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccch--hccccccCcEEEeeccCCCC
Q 042413          274 KYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPH--DIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       274 ~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~  331 (350)
                      ++|++++|.++.+| .++.+++|++|++++|.+..+|.  .+..+++|++|++++|....
T Consensus        96 ~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           96 EELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            99999999988887 58888999999999998888765  78889999999998875433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.13  E-value=2.8e-10  Score=109.29  Aligned_cols=125  Identities=14%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY  275 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~  275 (350)
                      ..++.|.+..+.. ..+....++  +|+.|.+.++...    ...+  +..+++|+.|++++|.++.++. ++.+++|++
T Consensus       243 ~~L~~L~l~~n~l~~~~~~~~l~--~L~~L~l~~n~l~----~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~  313 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQIS----NISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTY  313 (466)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCT--TCSEEECCSSCCC----CCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSE
T ss_pred             CCCCEEECCCCccccchhhhcCC--CCCEEECCCCccC----cccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCE
Confidence            4555666655554 222233444  7777777776652    2222  7778888888888888887665 777888888


Q ss_pred             eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413          276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      |++++|.+..+++ ++.+++|+.|++++|.+..+| .+..+++|+.|++++|.....
T Consensus       314 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          314 LTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             EECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBC
T ss_pred             EECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCcc
Confidence            8888888877665 678888888888888777764 577888888888887766554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.12  E-value=4.6e-13  Score=113.77  Aligned_cols=85  Identities=20%  Similarity=0.178  Sum_probs=43.1

Q ss_pred             HhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEE
Q 042413          243 FFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHL  322 (350)
Q Consensus       243 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L  322 (350)
                      .+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|..++.+++|++|++++|.+..+| .++.+++|++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence            4445555555555555555444 444455555555555555555544444455555555555444444 34455555555


Q ss_pred             EeeccCC
Q 042413          323 YFYCISP  329 (350)
Q Consensus       323 ~l~~~~~  329 (350)
                      ++++|..
T Consensus       121 ~l~~N~i  127 (198)
T 1ds9_A          121 YMSNNKI  127 (198)
T ss_dssp             EESEEEC
T ss_pred             ECCCCcC
Confidence            5554433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.12  E-value=2.1e-10  Score=113.78  Aligned_cols=123  Identities=15%  Similarity=-0.010  Sum_probs=89.0

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      +..++.|.+..+.+ .++.  .++  +|++|.+.++...    .++.    .+++|++|+|++|.++.+|.   .+.+|+
T Consensus        60 ~~~L~~L~L~~N~l~~lp~--~l~--~L~~L~Ls~N~l~----~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~  124 (622)
T 3g06_A           60 PAHITTLVIPDNNLTSLPA--LPP--ELRTLEVSGNQLT----SLPV----LPPGLLELSIFSNPLTHLPA---LPSGLC  124 (622)
T ss_dssp             CTTCSEEEECSCCCSCCCC--CCT--TCCEEEECSCCCS----CCCC----CCTTCCEEEECSCCCCCCCC---CCTTCC
T ss_pred             CCCCcEEEecCCCCCCCCC--cCC--CCCEEEcCCCcCC----cCCC----CCCCCCEEECcCCcCCCCCC---CCCCcC
Confidence            46788999988877 4443  445  8999999888763    2222    67889999999999888887   567888


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhcccc-----------------ccCcEEEeeccCCCCCCCCc
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMM-----------------QKLMHLYFYCISPCTSKNYS  336 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L-----------------~~L~~L~l~~~~~~~~~~~~  336 (350)
                      +|++++|.++.+|..   +++|++|++++|.+..+|..+.+|                 ++|+.|++++|.....+..+
T Consensus       125 ~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~  200 (622)
T 3g06_A          125 KLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP  200 (622)
T ss_dssp             EEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC
T ss_pred             EEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCcc
Confidence            888988888888874   478888888888777766533322                 56677777776655543333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.09  E-value=2.5e-10  Score=109.38  Aligned_cols=121  Identities=18%  Similarity=0.103  Sum_probs=102.8

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      ...+++|.+..+.. ..+....++  +|+.|.+.++...    .. +  +..+++|++|++++|.++.+|  ++.+++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~~~l~~l~--~L~~L~Ls~n~l~----~~-~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~  109 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMTGIEKLT--GLTKLICTSNNIT----TL-D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLT  109 (457)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCT--TCSEEECCSSCCS----CC-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred             cCCCCEEEccCCCcccChhhcccC--CCCEEEccCCcCC----eE-c--cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence            36789999988877 455555667  9999999999874    22 2  788999999999999999886  88999999


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCC
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~  331 (350)
                      +|++++|.++.+|  ++.+++|++|++++|.+..+|  ++.+++|+.|++++|...+
T Consensus       110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~  162 (457)
T 3bz5_A          110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKIT  162 (457)
T ss_dssp             EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCC
T ss_pred             EEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccc
Confidence            9999999999886  889999999999999888885  8899999999999885443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.08  E-value=6.1e-11  Score=108.59  Aligned_cols=127  Identities=15%  Similarity=0.130  Sum_probs=78.5

Q ss_pred             CCeeEEEEecCcc--chhh-ccCCCCCCeeEEEEecC-CCCCCCccchHHHhcCCceeeEEEccCC-CCCc--CccccCC
Q 042413          197 ANVKRCFILKDLI--DFFS-SLKHSDMYLQSFLNHSS-KNNHLNSKDYENFFKRFKYLRVLNLGSA-VLDQ--YPSGLEN  269 (350)
Q Consensus       197 ~~~r~L~l~~~~~--~~~~-~~~~~~~~Lr~L~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~--lp~~i~~  269 (350)
                      .++++|.+..+..  ..+. ...++  +|+.|.+.++ ...   ....+..+..+++|+.|++++| .++.  ++..+..
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~--~L~~L~L~~~~~l~---~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  192 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNS--NLVRLNLSGCSGFS---EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  192 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCT--TCSEEECTTCBSCC---HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCC--CCCEEECCCCCCCC---HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence            3456666655544  1121 22344  6777776666 231   1124455666777777777777 6662  5666666


Q ss_pred             CC-CCCeeeeeCCC--C--cccchhhhcCcCCCEEEccCCc-Cc-ccchhccccccCcEEEeeccC
Q 042413          270 LY-LLKYLKLNIPS--L--KCLHSLLCTLLNLETLEMPSSY-ID-QSPHDIWMMQKLMHLYFYCIS  328 (350)
Q Consensus       270 l~-~L~~L~l~~~~--l--~~lP~~i~~l~~L~~L~l~~~~-l~-~lP~~i~~L~~L~~L~l~~~~  328 (350)
                      ++ +|++|++++|.  +  ..+|..+..+++|++|++++|. +. ..|..++++++|++|++++|.
T Consensus       193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            77 77777777773  3  3566666777777777777774 43 456667777777777777764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.08  E-value=3.7e-11  Score=110.06  Aligned_cols=127  Identities=15%  Similarity=0.103  Sum_probs=105.3

Q ss_pred             CCCeeEEEEecCccc---hhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCC-CCC--cCccccC
Q 042413          196 LANVKRCFILKDLID---FFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSA-VLD--QYPSGLE  268 (350)
Q Consensus       196 ~~~~r~L~l~~~~~~---~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~--~lp~~i~  268 (350)
                      ..++++|.+..+...   .+. ...++  +|++|.+.++..    ....+..+..+++|++|++++| .++  .+|..+.
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~--~L~~L~L~~~~l----~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~  165 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCS--KLQNLSLEGLRL----SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS  165 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBC--CCSEEECTTCBC----CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCC--CCCEEeCcCccc----CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence            467899999888762   333 33566  999999998875    4455677888999999999999 577  4777788


Q ss_pred             CCCCCCeeeeeCC-CCcc--cchhhhcCc-CCCEEEccCCc--C--cccchhccccccCcEEEeeccC
Q 042413          269 NLYLLKYLKLNIP-SLKC--LHSLLCTLL-NLETLEMPSSY--I--DQSPHDIWMMQKLMHLYFYCIS  328 (350)
Q Consensus       269 ~l~~L~~L~l~~~-~l~~--lP~~i~~l~-~L~~L~l~~~~--l--~~lP~~i~~L~~L~~L~l~~~~  328 (350)
                      .+++|++|++++| .++.  +|..++.++ +|++|++++|.  +  ..+|..+.++++|++|++++|.
T Consensus       166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            8999999999999 8874  788889999 99999999994  4  5678888899999999999986

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.05  E-value=4.5e-10  Score=110.25  Aligned_cols=127  Identities=13%  Similarity=0.058  Sum_probs=76.3

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY  275 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~  275 (350)
                      .+++.|.+..+.+ .++.  -..  +|+.|.+.+|...    .++ .   .+++|+.|+|++|.++.+|.   .+++|++
T Consensus       100 ~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~----~lp-~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~  164 (571)
T 3cvr_A          100 ASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLT----MLP-E---LPALLEYINADNNQLTMLPE---LPTSLEV  164 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCS----CCC-C---CCTTCCEEECCSSCCSCCCC---CCTTCCE
T ss_pred             CCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCC----CCC-C---cCccccEEeCCCCccCcCCC---cCCCcCE
Confidence            4555555555544 2222  112  5666666665542    222 2   46667777777777776665   4567777


Q ss_pred             eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccC-------cEEEeeccCCCCCCCCcccccccccccc
Q 042413          276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKL-------MHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L-------~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      |++++|.++.+|. ++  .+|++|++++|.+..+|. +..  +|       +.|++++|.+...   |..+.++++|+.
T Consensus       165 L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l---p~~l~~l~~L~~  234 (571)
T 3cvr_A          165 LSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHI---PENILSLDPTCT  234 (571)
T ss_dssp             EECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCC---CGGGGGSCTTEE
T ss_pred             EECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceec---CHHHhcCCCCCE
Confidence            7777777777777 55  778888888887777777 554  66       8888887766543   333444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.04  E-value=7.6e-10  Score=109.83  Aligned_cols=116  Identities=16%  Similarity=0.033  Sum_probs=82.8

Q ss_pred             CCCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCC
Q 042413          195 SLANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLL  273 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L  273 (350)
                      ...+++.|.+..+.+ .++.  .++  +|+.|.+.++...    .++.    .+++|+.|++++|.++.+|..   +++|
T Consensus        79 ~l~~L~~L~Ls~N~l~~lp~--~l~--~L~~L~Ls~N~l~----~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L  143 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTSLPV--LPP--GLLELSIFSNPLT----HLPA----LPSGLCKLWIFGNQLTSLPVL---PPGL  143 (622)
T ss_dssp             CCTTCCEEEECSCCCSCCCC--CCT--TCCEEEECSCCCC----CCCC----CCTTCCEEECCSSCCSCCCCC---CTTC
T ss_pred             cCCCCCEEEcCCCcCCcCCC--CCC--CCCEEECcCCcCC----CCCC----CCCCcCEEECCCCCCCcCCCC---CCCC
Confidence            347899999998887 4443  455  9999999998873    2222    567888899999988888864   3778


Q ss_pred             CeeeeeCCCCcccchhhh---cC--------------cCCCEEEccCCcCcccchhccccccCcEEEeeccC
Q 042413          274 KYLKLNIPSLKCLHSLLC---TL--------------LNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCIS  328 (350)
Q Consensus       274 ~~L~l~~~~l~~lP~~i~---~l--------------~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~  328 (350)
                      ++|++++|.++.+|..+.   .|              ++|+.|++++|.+..+|..+   ++|+.|++++|.
T Consensus       144 ~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~---~~L~~L~L~~N~  212 (622)
T 3g06_A          144 QELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNR  212 (622)
T ss_dssp             CEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC
T ss_pred             CEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCcc---chhhEEECcCCc
Confidence            888888888776654333   33              78899999999888887643   344444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.03  E-value=6.6e-10  Score=106.41  Aligned_cols=97  Identities=13%  Similarity=0.079  Sum_probs=51.4

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE  300 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~  300 (350)
                      +|++|.+.++...    .. + .+.++++|++|++++|.++.+|..+   .+|++|++++|.++.+| .++.+++|++|+
T Consensus       132 ~L~~L~L~~n~l~----~l-p-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          132 LLEYLGVSNNQLE----KL-P-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TCCEEECCSSCCS----SC-C-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred             CCCEEECcCCCCC----CC-c-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEE
Confidence            5555555555441    11 1 2555555555555555555555432   25555555555555555 355566666666


Q ss_pred             ccCCcCcccchhccccccCcEEEeeccCCC
Q 042413          301 MPSSYIDQSPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       301 l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                      +++|.+..+|...   ++|++|++++|...
T Consensus       202 l~~N~l~~l~~~~---~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          202 ADNNSLKKLPDLP---LSLESIVAGNNILE  228 (454)
T ss_dssp             CCSSCCSSCCCCC---TTCCEEECCSSCCS
T ss_pred             CCCCcCCcCCCCc---CcccEEECcCCcCC
Confidence            6666555555432   35666666665444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.00  E-value=1.3e-09  Score=100.60  Aligned_cols=95  Identities=14%  Similarity=0.131  Sum_probs=67.3

Q ss_pred             cchHHHhcCCceeeEEEccCCCCCcCccc--------------------------cCCC-CCCCeeeeeCCCCcccchhh
Q 042413          238 KDYENFFKRFKYLRVLNLGSAVLDQYPSG--------------------------LENL-YLLKYLKLNIPSLKCLHSLL  290 (350)
Q Consensus       238 ~~~~~~~~~l~~L~~L~L~~~~l~~lp~~--------------------------i~~l-~~L~~L~l~~~~l~~lP~~i  290 (350)
                      .+.+..|..+++|++|++++|.++.+|..                          +..+ ..+++|++++|+|+.+|..+
T Consensus        94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~  173 (350)
T 4ay9_X           94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA  173 (350)
T ss_dssp             EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred             ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence            34456677788888888887766544321                          1122 24667778888888888777


Q ss_pred             hcCcCCCEEEccCC-cCcccch-hccccccCcEEEeeccCCCCC
Q 042413          291 CTLLNLETLEMPSS-YIDQSPH-DIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       291 ~~l~~L~~L~l~~~-~l~~lP~-~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ....+|+.|+++++ .++.+|. .+..+++|+.|++++|.....
T Consensus       174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l  217 (350)
T 4ay9_X          174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL  217 (350)
T ss_dssp             STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred             ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence            77778888888764 8888886 467888999999988876654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.98  E-value=1.6e-09  Score=103.67  Aligned_cols=120  Identities=19%  Similarity=0.183  Sum_probs=78.3

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY  275 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~  275 (350)
                      ..++.|.+..+.. .++....++  +|+.|.+.++...    .. +.   ...+|++|++++|.++.+| .++.+++|++
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~--~L~~L~l~~N~l~----~l-p~---~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~  199 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSS--FLKIIDVDNNSLK----KL-PD---LPPSLEFIAAGNNQLEELP-ELQNLPFLTA  199 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCT--TCCEEECCSSCCS----CC-CC---CCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred             CCCCEEECcCCCCCCCcccCCCC--CCCEEECCCCcCc----cc-CC---CcccccEEECcCCcCCcCc-cccCCCCCCE
Confidence            5677777777766 444444555  8888888887663    11 11   2346777777777777776 5777777777


Q ss_pred             eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCC
Q 042413          276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~  331 (350)
                      |++++|.++.+|...   .+|++|++++|.+..+|. ++.+++|++|++++|....
T Consensus       200 L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          200 IYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             EECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS
T ss_pred             EECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc
Confidence            777777776666532   466777777776666663 6666677777776665544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.96  E-value=1.2e-10  Score=109.09  Aligned_cols=86  Identities=21%  Similarity=0.157  Sum_probs=38.6

Q ss_pred             HhcCCceeeEEEccCCCC-----CcCccccCCCCCCCeeeeeCCCCcc-----cchhh--hcCcCCCEEEccCCcCcc--
Q 042413          243 FFKRFKYLRVLNLGSAVL-----DQYPSGLENLYLLKYLKLNIPSLKC-----LHSLL--CTLLNLETLEMPSSYIDQ--  308 (350)
Q Consensus       243 ~~~~l~~L~~L~L~~~~l-----~~lp~~i~~l~~L~~L~l~~~~l~~-----lP~~i--~~l~~L~~L~l~~~~l~~--  308 (350)
                      .+..+++|++|+|++|.+     ..+|..+..+++|++|+|++|.++.     +|..+  +++++|++|++++|.+..  
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g  290 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  290 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence            334444444444444444     2344444444445555554444432     23333  224445555555444443  


Q ss_pred             ---cchhc-cccccCcEEEeeccC
Q 042413          309 ---SPHDI-WMMQKLMHLYFYCIS  328 (350)
Q Consensus       309 ---lP~~i-~~L~~L~~L~l~~~~  328 (350)
                         +|..+ .++++|++|++++|.
T Consensus       291 ~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          291 VRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHHHhcCCCceEEEccCCc
Confidence               44444 334445555554443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.94  E-value=1.4e-09  Score=100.04  Aligned_cols=86  Identities=14%  Similarity=0.091  Sum_probs=66.5

Q ss_pred             hcCCceeeEEEccC-CCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccchhccccccCc
Q 042413          244 FKRFKYLRVLNLGS-AVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPHDIWMMQKLM  320 (350)
Q Consensus       244 ~~~l~~L~~L~L~~-~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~  320 (350)
                      +..+++|+.|+|++ |.++.+| ..++.|.+|++|+|++|.|+.+|+ .++.|++|+.|+|++|.+..+|..+....+|+
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~  106 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ  106 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence            77788888888886 7888766 567888888888888888887654 56888888888888888888887655544588


Q ss_pred             EEEeeccCC
Q 042413          321 HLYFYCISP  329 (350)
Q Consensus       321 ~L~l~~~~~  329 (350)
                      .|++.+|..
T Consensus       107 ~l~l~~N~~  115 (347)
T 2ifg_A          107 ELVLSGNPL  115 (347)
T ss_dssp             EEECCSSCC
T ss_pred             EEEeeCCCc
Confidence            888877754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.89  E-value=4.2e-09  Score=97.19  Aligned_cols=132  Identities=16%  Similarity=0.032  Sum_probs=91.4

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCc-eeeEEEccCCCCCcCccccCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFK-YLRVLNLGSAVLDQYPSGLENLYLL  273 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L  273 (350)
                      ..+++++.+..+.. ..+........++..+.+.++..   ...+....|..+. .++.|+|++|.++.+|..+....+|
T Consensus       103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~---i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L  179 (350)
T 4ay9_X          103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN---IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL  179 (350)
T ss_dssp             CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT---CCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred             ccccccccccccccccCCchhhcccchhhhhhhccccc---cccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence            45677888877766 33332222222666666655433   2344445566654 6889999999999998888888889


Q ss_pred             CeeeeeC-CCCcccchh-hhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413          274 KYLKLNI-PSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       274 ~~L~l~~-~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      +.|++++ |.++.+|+. +..+++|++|++++|.+..+|...  +.+|++|.+.++...+.
T Consensus       180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKK  238 (350)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCCC
T ss_pred             hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccCCCcCc
Confidence            9999975 678899875 488999999999999999998742  45666666655443333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.85  E-value=5.3e-09  Score=96.21  Aligned_cols=81  Identities=19%  Similarity=0.080  Sum_probs=72.5

Q ss_pred             EEEccCC-CCCcCccccCCCCCCCeeeeeC-CCCcccc-hhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeecc
Q 042413          252 VLNLGSA-VLDQYPSGLENLYLLKYLKLNI-PSLKCLH-SLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCI  327 (350)
Q Consensus       252 ~L~L~~~-~l~~lp~~i~~l~~L~~L~l~~-~~l~~lP-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~  327 (350)
                      .++++++ .++.+|. ++.+.+|++|+|++ |.++.+| ..++.|.+|+.|+|++|.+..+|+ .|++|++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4588888 8999999 99999999999996 9999887 568999999999999998888876 6799999999999999


Q ss_pred             CCCCCC
Q 042413          328 SPCTSK  333 (350)
Q Consensus       328 ~~~~~~  333 (350)
                      .+...+
T Consensus        91 ~l~~~~   96 (347)
T 2ifg_A           91 ALESLS   96 (347)
T ss_dssp             CCSCCC
T ss_pred             ccceeC
Confidence            877654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.83  E-value=1.1e-09  Score=102.40  Aligned_cols=130  Identities=13%  Similarity=0.123  Sum_probs=101.3

Q ss_pred             CCeeEEEEecCcc------chhhc-cCC---------CCCCeeEEEEecCCCCCCCccchH---HHhcCCceeeEEEccC
Q 042413          197 ANVKRCFILKDLI------DFFSS-LKH---------SDMYLQSFLNHSSKNNHLNSKDYE---NFFKRFKYLRVLNLGS  257 (350)
Q Consensus       197 ~~~r~L~l~~~~~------~~~~~-~~~---------~~~~Lr~L~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~L~~  257 (350)
                      ..+++|.+..+.+      .+... ...         +  +|++|.+.++...   ....+   ..+..+++|+.|+|++
T Consensus       122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~--~L~~L~L~~n~l~---~~~~~~l~~~l~~~~~L~~L~L~~  196 (386)
T 2ca6_A          122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP--PLRSIICGRNRLE---NGSMKEWAKTFQSHRLLHTVKMVQ  196 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--CCCEEECCSSCCT---GGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC--CCcEEECCCCCCC---cHHHHHHHHHHHhCCCcCEEECcC
Confidence            5688888888776      12221 122         5  9999999998873   22333   5677899999999999


Q ss_pred             CCCC------cCccccCCCCCCCeeeeeCCCC-----cccchhhhcCcCCCEEEccCCcCcc-----cchhc--cccccC
Q 042413          258 AVLD------QYPSGLENLYLLKYLKLNIPSL-----KCLHSLLCTLLNLETLEMPSSYIDQ-----SPHDI--WMMQKL  319 (350)
Q Consensus       258 ~~l~------~lp~~i~~l~~L~~L~l~~~~l-----~~lP~~i~~l~~L~~L~l~~~~l~~-----lP~~i--~~L~~L  319 (350)
                      |.+.      -.|..+..+++|++|+|++|.+     ..+|..+..+++|++|++++|.+..     +|..+  +++++|
T Consensus       197 n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L  276 (386)
T 2ca6_A          197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL  276 (386)
T ss_dssp             SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC
T ss_pred             CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe
Confidence            9987      2344788899999999999998     6789999999999999999997765     46776  448999


Q ss_pred             cEEEeeccCCCC
Q 042413          320 MHLYFYCISPCT  331 (350)
Q Consensus       320 ~~L~l~~~~~~~  331 (350)
                      ++|++++|....
T Consensus       277 ~~L~L~~n~i~~  288 (386)
T 2ca6_A          277 QTLRLQYNEIEL  288 (386)
T ss_dssp             CEEECCSSCCBH
T ss_pred             EEEECcCCcCCH
Confidence            999999987655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.74  E-value=4.5e-09  Score=97.44  Aligned_cols=108  Identities=13%  Similarity=0.090  Sum_probs=54.7

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCc-eeeEEEccCCCCCcCc-c----ccCCC-CCCCeeeeeCCCCcc-----cch
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFK-YLRVLNLGSAVLDQYP-S----GLENL-YLLKYLKLNIPSLKC-----LHS  288 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~lp-~----~i~~l-~~L~~L~l~~~~l~~-----lP~  288 (350)
                      +|+.|.+.++.........+...+..++ .|+.|+|++|.++..+ .    .+... ++|++|+|++|.+..     +|.
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~  218 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY  218 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence            5666666555542111122333344443 5666666666655322 2    22233 366666666666554     555


Q ss_pred             hhhcC-cCCCEEEccCCcCcccch-----hccccccCcEEEeeccC
Q 042413          289 LLCTL-LNLETLEMPSSYIDQSPH-----DIWMMQKLMHLYFYCIS  328 (350)
Q Consensus       289 ~i~~l-~~L~~L~l~~~~l~~lP~-----~i~~L~~L~~L~l~~~~  328 (350)
                      .+..+ ++|++|++++|.+...+.     .+..+++|+.|++++|.
T Consensus       219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            55443 366666666665544332     23455666666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.69  E-value=6.6e-09  Score=96.34  Aligned_cols=110  Identities=12%  Similarity=0.089  Sum_probs=53.0

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcC-CceeeEEEccCCCCC-----cCccccCCCC-CCCeeeeeCCCCccc-chhh--
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKR-FKYLRVLNLGSAVLD-----QYPSGLENLY-LLKYLKLNIPSLKCL-HSLL--  290 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~l~-----~lp~~i~~l~-~L~~L~l~~~~l~~l-P~~i--  290 (350)
                      +|++|.+.++.........+...+.. .+.|+.|+|++|.++     .++..+..+. +|++|++++|.++.. +..+  
T Consensus       110 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  189 (362)
T 3goz_A          110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK  189 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHH
Confidence            56666666555421111111222333 245666666666555     2333334443 566666666655433 2222  


Q ss_pred             --hcC-cCCCEEEccCCcCcc-----cchhcccc-ccCcEEEeeccCCC
Q 042413          291 --CTL-LNLETLEMPSSYIDQ-----SPHDIWMM-QKLMHLYFYCISPC  330 (350)
Q Consensus       291 --~~l-~~L~~L~l~~~~l~~-----lP~~i~~L-~~L~~L~l~~~~~~  330 (350)
                        ..+ ++|++|++++|.+..     +|..+..+ ++|++|++++|...
T Consensus       190 ~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence              223 356666666665554     45555443 35666666655443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.57  E-value=1e-08  Score=97.80  Aligned_cols=128  Identities=16%  Similarity=0.084  Sum_probs=73.5

Q ss_pred             CCeeEEEEecCccc------hhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCc----eeeEEEccCCCCC----
Q 042413          197 ANVKRCFILKDLID------FFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFK----YLRVLNLGSAVLD----  261 (350)
Q Consensus       197 ~~~r~L~l~~~~~~------~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~----~L~~L~L~~~~l~----  261 (350)
                      ..+++|.+..+...      ++. ...++  +|++|.+.++...   .......+..++    +|+.|+|++|.++    
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~--~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNP--ALAELNLRSNELG---DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCT--TCCEEECTTCCCH---HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCC--CcCEEeCCCCcCC---hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            34666666666551      111 22345  6777777666541   112223333444    5777777777766    


Q ss_pred             -cCccccCCCCCCCeeeeeCCCCccc-chhhhc-----CcCCCEEEccCCcCcc-----cchhccccccCcEEEeeccCC
Q 042413          262 -QYPSGLENLYLLKYLKLNIPSLKCL-HSLLCT-----LLNLETLEMPSSYIDQ-----SPHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       262 -~lp~~i~~l~~L~~L~l~~~~l~~l-P~~i~~-----l~~L~~L~l~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~  329 (350)
                       .+|..+..+++|++|++++|.+... +..+..     ..+|++|++++|.+..     ++..+..+++|++|++++|..
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence             3466667777777777777766522 222222     4467777777775543     455566667777777777653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.48  E-value=1.3e-07  Score=90.01  Aligned_cols=135  Identities=15%  Similarity=0.137  Sum_probs=92.8

Q ss_pred             CCeeEEEEecCccch--h----hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-cc----
Q 042413          197 ANVKRCFILKDLIDF--F----SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PS----  265 (350)
Q Consensus       197 ~~~r~L~l~~~~~~~--~----~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~----  265 (350)
                      ..+++|.+..+....  +    ........+|++|.+.++.........++..+..+++|+.|++++|.++.. +.    
T Consensus        56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  135 (461)
T 1z7x_W           56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE  135 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence            678899998887611  1    111111115999999988873211135677888999999999999987621 22    


Q ss_pred             c-cCCCCCCCeeeeeCCCCcc-----cchhhhcCcCCCEEEccCCcCcccc-hhcc-----ccccCcEEEeeccCCCC
Q 042413          266 G-LENLYLLKYLKLNIPSLKC-----LHSLLCTLLNLETLEMPSSYIDQSP-HDIW-----MMQKLMHLYFYCISPCT  331 (350)
Q Consensus       266 ~-i~~l~~L~~L~l~~~~l~~-----lP~~i~~l~~L~~L~l~~~~l~~lP-~~i~-----~L~~L~~L~l~~~~~~~  331 (350)
                      . .....+|++|++++|.++.     ++..+..+++|++|++++|.+...+ ..+.     .+++|++|++++|....
T Consensus       136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            2 2235679999999998863     5677788899999999999765432 2232     35689999998886554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.45  E-value=3.6e-08  Score=91.78  Aligned_cols=132  Identities=14%  Similarity=0.037  Sum_probs=84.2

Q ss_pred             CCeeEEEEecCccch---hhcc-CCCCCCeeEEEEecCCCCCCCccchHHHh-cCCceeeEEEccCCCCC-----cCccc
Q 042413          197 ANVKRCFILKDLIDF---FSSL-KHSDMYLQSFLNHSSKNNHLNSKDYENFF-KRFKYLRVLNLGSAVLD-----QYPSG  266 (350)
Q Consensus       197 ~~~r~L~l~~~~~~~---~~~~-~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~-----~lp~~  266 (350)
                      ..++.|.+..+.+..   .... .++  +++.|.+.+|.........+...+ ...+.|+.|+|++|.++     .++..
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~--~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFL--RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHH--TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHH--hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence            467778877776621   1111 234  778888877766310011111222 34677888888888875     24555


Q ss_pred             cCCCCCCCeeeeeCCCCc-----ccchhhhcCcCCCEEEccCCcCcc-----cchhccccccCcEEEeeccCCC
Q 042413          267 LENLYLLKYLKLNIPSLK-----CLHSLLCTLLNLETLEMPSSYIDQ-----SPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       267 i~~l~~L~~L~l~~~~l~-----~lP~~i~~l~~L~~L~l~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                      +..+++|++|+|++|.+.     .++..+...++|++|++++|.++.     ++..+...++|++|++++|.+.
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            567778888888888775     245566677788888888886653     4445566678888888887543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.39  E-value=7e-08  Score=89.83  Aligned_cols=106  Identities=15%  Similarity=0.083  Sum_probs=55.1

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-----cccc-CCCCCCCeeeeeCCCCcc-----cchh
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-----PSGL-ENLYLLKYLKLNIPSLKC-----LHSL  289 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-----p~~i-~~l~~L~~L~l~~~~l~~-----lP~~  289 (350)
                      +|+.|.+.++...   ..........+++|+.|+|++|.++..     ...+ ....+|++|+|++|.++.     ++..
T Consensus       102 ~L~~L~Ls~n~l~---~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  178 (372)
T 3un9_A          102 ALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG  178 (372)
T ss_dssp             CEEEEECTTCCCC---HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CceEEEecCCCCC---HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence            6666666666542   111222233344566666666665421     1111 234556666666666542     4444


Q ss_pred             hhcCcCCCEEEccCCcCcc-----cchhccccccCcEEEeeccCC
Q 042413          290 LCTLLNLETLEMPSSYIDQ-----SPHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       290 i~~l~~L~~L~l~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~  329 (350)
                      +..+++|++|+|++|.++.     ++..+...++|+.|++++|.+
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence            4556666666666665442     234455555666666666543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.33  E-value=3.2e-07  Score=90.22  Aligned_cols=108  Identities=15%  Similarity=0.044  Sum_probs=54.3

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCcccchhhhcCcC
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLN  295 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~  295 (350)
                      +|+.|.+.++.........++..+..+++|+.|++++|.++     .++..+..+++|++|++++|.+..+|..++.+++
T Consensus       165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~  244 (592)
T 3ogk_B          165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN  244 (592)
T ss_dssp             TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred             CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence            55555555543211000112333444555555555555543     2222333445555555555555445444444444


Q ss_pred             CCEEEc---------------------------cCCcCcccchhccccccCcEEEeeccC
Q 042413          296 LETLEM---------------------------PSSYIDQSPHDIWMMQKLMHLYFYCIS  328 (350)
Q Consensus       296 L~~L~l---------------------------~~~~l~~lP~~i~~L~~L~~L~l~~~~  328 (350)
                      |+.|++                           +++....+|..+..+++|++|++++|.
T Consensus       245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             HHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence            444444                           444445566667777788888887765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.29  E-value=2.3e-07  Score=91.20  Aligned_cols=129  Identities=12%  Similarity=0.081  Sum_probs=79.2

Q ss_pred             CCeeEEEEecCccc------hhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCcc----
Q 042413          197 ANVKRCFILKDLID------FFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPS----  265 (350)
Q Consensus       197 ~~~r~L~l~~~~~~------~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~----  265 (350)
                      ..+++|.+..+...      +.. ...++  +|++|.+..+..........+..+.++++|+.|++++|.+..+|.    
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~--~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHELAQHNT--SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHHHHHHCC--CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             CCCCEEECccccccCcchhHHHHHHhcCC--CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            45666666655431      111 12344  677776666655211123344455566667777766665544443    


Q ss_pred             -----------------------ccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcc--cchhccccccCc
Q 042413          266 -----------------------GLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQ--SPHDIWMMQKLM  320 (350)
Q Consensus       266 -----------------------~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~--lP~~i~~L~~L~  320 (350)
                                             .++.+++|+.|+++++....+|..+..+++|++|++++|.+..  ++..+..+++|+
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence                                   4445555555555555556778888899999999999996532  334468899999


Q ss_pred             EEEeecc
Q 042413          321 HLYFYCI  327 (350)
Q Consensus       321 ~L~l~~~  327 (350)
                      +|+++++
T Consensus       322 ~L~L~~~  328 (592)
T 3ogk_B          322 VLETRNV  328 (592)
T ss_dssp             EEEEEGG
T ss_pred             EEeccCc
Confidence            9999844

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.27  E-value=3.6e-07  Score=76.29  Aligned_cols=109  Identities=13%  Similarity=0.052  Sum_probs=80.0

Q ss_pred             CeeEEEEecC-CCCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCcc-----cchh
Q 042413          221 YLQSFLNHSS-KNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLKC-----LHSL  289 (350)
Q Consensus       221 ~Lr~L~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~~-----lP~~  289 (350)
                      .|++|.+.++ .........+...+...+.|++|+|++|.+.     .+...+...++|++|+|++|.|..     +...
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            8888888887 6532112234456777888999999999886     244555566789999999998863     5667


Q ss_pred             hhcCcCCCEEEc--cCCcCcc-----cchhccccccCcEEEeeccCC
Q 042413          290 LCTLLNLETLEM--PSSYIDQ-----SPHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       290 i~~l~~L~~L~l--~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~  329 (350)
                      +...++|++|++  ++|.++.     +...+...++|++|++++|..
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            777888999999  7786654     445666778899999987743

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.12  E-value=7.6e-07  Score=87.51  Aligned_cols=127  Identities=12%  Similarity=0.126  Sum_probs=91.0

Q ss_pred             CCeeEEEEecCcc--chhhcc--CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCc-----Ccccc
Q 042413          197 ANVKRCFILKDLI--DFFSSL--KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-----YPSGL  267 (350)
Q Consensus       197 ~~~r~L~l~~~~~--~~~~~~--~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~i  267 (350)
                      ..+++|.+..+..  ..+...  .++  +|++|.+.++..-  ....++..+.++++|++|+|++|.++.     ++...
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~--~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFK--NFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCT--TCCEEEEESCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCC--CCcEEeCCCcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            4688899988766  222222  466  9999999887431  122245566689999999999998652     33344


Q ss_pred             CCCCCCCeeeeeCCC--Cc--ccchhhhcCcCCCEEEccCC-cCcccchhccccccCcEEEeecc
Q 042413          268 ENLYLLKYLKLNIPS--LK--CLHSLLCTLLNLETLEMPSS-YIDQSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       268 ~~l~~L~~L~l~~~~--l~--~lP~~i~~l~~L~~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~~  327 (350)
                      ..+++|++|++++|.  +.  .++.-+..+++|++|++++| .+..+|..+.++++|++|+++.+
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            467899999999886  32  34444466899999999999 77778888888889999986544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.10  E-value=1.9e-06  Score=76.10  Aligned_cols=79  Identities=24%  Similarity=0.100  Sum_probs=54.7

Q ss_pred             cCCceeeEEEccCCCCCcCc---cccCCCCCCCeeeeeCCCCcccchhhhcCc--CCCEEEccCCcCc-ccch-------
Q 042413          245 KRFKYLRVLNLGSAVLDQYP---SGLENLYLLKYLKLNIPSLKCLHSLLCTLL--NLETLEMPSSYID-QSPH-------  311 (350)
Q Consensus       245 ~~l~~L~~L~L~~~~l~~lp---~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~--~L~~L~l~~~~l~-~lP~-------  311 (350)
                      .+++.|+.|+|++|.++.++   ..++.+++|++|+|++|.|+.+ ..+..+.  +|++|+|++|.+. .+|.       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            56778888888888877543   4556778888888888887766 3355555  7888888888554 3442       


Q ss_pred             hccccccCcEEEe
Q 042413          312 DIWMMQKLMHLYF  324 (350)
Q Consensus       312 ~i~~L~~L~~L~l  324 (350)
                      .+..+++|+.||-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            3567777777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=4.1e-06  Score=76.26  Aligned_cols=100  Identities=16%  Similarity=0.097  Sum_probs=78.3

Q ss_pred             CCceeeEEEccCCCCCcCcc-ccCCCCCCCeeeeeCCCCcccch-hhhcCcCCC-EEEccCCcCcccch-hccccccCcE
Q 042413          246 RFKYLRVLNLGSAVLDQYPS-GLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLE-TLEMPSSYIDQSPH-DIWMMQKLMH  321 (350)
Q Consensus       246 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~-~L~l~~~~l~~lP~-~i~~L~~L~~  321 (350)
                      .+++|+.|+|++|.++.+|. .+.++.+|+.+++.+| ++.+++ .+..+.+|+ .+++.+ .+..+++ .|..+++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            48899999999999998884 5788999999999987 888875 458899999 999988 7777764 7888999999


Q ss_pred             EEeeccCCCCCCCCcccccccccccccC
Q 042413          322 LYFYCISPCTSKNYSSSLKNLIFISALH  349 (350)
Q Consensus       322 L~l~~~~~~~~~~~~~~l~~L~~L~~L~  349 (350)
                      |+++++......  ...+.++.+|+.++
T Consensus       302 l~l~~n~i~~I~--~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLG--DELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEEC--TTTTCTTCCCCEEE
T ss_pred             EEeCCCccCccc--hhhhcCCcchhhhc
Confidence            999777665542  23345555555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.03  E-value=1.3e-05  Score=74.02  Aligned_cols=128  Identities=13%  Similarity=0.067  Sum_probs=84.8

Q ss_pred             CCCeeEEEEecCc-cchhhccCCCCCCeeEEEEecCCCCCCCccchHHH-hcCCceeeEEEccCC--C------CCcCcc
Q 042413          196 LANVKRCFILKDL-IDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENF-FKRFKYLRVLNLGSA--V------LDQYPS  265 (350)
Q Consensus       196 ~~~~r~L~l~~~~-~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~--~------l~~lp~  265 (350)
                      ...++.|.+.++. ...+. ...+  +|+.|.+..+...   ....... ...+++|+.|+|+.+  .      +..+..
T Consensus       171 ~P~L~~L~L~g~~~l~l~~-~~~~--~L~~L~L~~~~l~---~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLSIGK-KPRP--NLKSLEIISGGLP---DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             CTTCCEEEEECCBTCBCCS-CBCT--TCSEEEEECSBCC---HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             CCCCcEEEEeCCCCceecc-ccCC--CCcEEEEecCCCC---hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            4578999998763 23333 2345  9999999877652   2222111 237889999998632  1      222222


Q ss_pred             cc--CCCCCCCeeeeeCCCCc-ccchhh---hcCcCCCEEEccCCcCcc-----cchhccccccCcEEEeeccCC
Q 042413          266 GL--ENLYLLKYLKLNIPSLK-CLHSLL---CTLLNLETLEMPSSYIDQ-----SPHDIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       266 ~i--~~l~~L~~L~l~~~~l~-~lP~~i---~~l~~L~~L~l~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~  329 (350)
                      .+  ..+++|++|+|++|.+. ..+..+   ..+++|++|+|+.|.++.     ++..+.++++|+.|+++.|.+
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            23  35789999999998876 233333   357899999999987665     566667889999999988753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.98  E-value=9.5e-07  Score=77.99  Aligned_cols=87  Identities=20%  Similarity=0.184  Sum_probs=63.7

Q ss_pred             hcCCceeeE--EEccCCCCCcCccc----cCCCCCCCeeeeeCCCCccc---chhhhcCcCCCEEEccCCcCcccchhcc
Q 042413          244 FKRFKYLRV--LNLGSAVLDQYPSG----LENLYLLKYLKLNIPSLKCL---HSLLCTLLNLETLEMPSSYIDQSPHDIW  314 (350)
Q Consensus       244 ~~~l~~L~~--L~L~~~~l~~lp~~----i~~l~~L~~L~l~~~~l~~l---P~~i~~l~~L~~L~l~~~~l~~lP~~i~  314 (350)
                      +...+.|..  ++++.|....++..    ..++++|+.|+|++|.|..+   |..++.+++|+.|+|++|.+..+ ..+.
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~  215 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD  215 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence            333444444  56666654333321    24688999999999998765   46678999999999999988887 3466


Q ss_pred             ccc--cCcEEEeeccCCCC
Q 042413          315 MMQ--KLMHLYFYCISPCT  331 (350)
Q Consensus       315 ~L~--~L~~L~l~~~~~~~  331 (350)
                      .+.  +|+.|++++|..+.
T Consensus       216 ~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          216 KIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             GGTTSCCSEEECTTSTTGG
T ss_pred             hcccCCcceEEccCCcCcc
Confidence            666  99999999998775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.94  E-value=9.6e-07  Score=86.78  Aligned_cols=37  Identities=16%  Similarity=0.149  Sum_probs=17.7

Q ss_pred             hcCcCCCEEEccCCcCcc--cchhccccccCcEEEeecc
Q 042413          291 CTLLNLETLEMPSSYIDQ--SPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       291 ~~l~~L~~L~l~~~~l~~--lP~~i~~L~~L~~L~l~~~  327 (350)
                      ..+++|++|++++|.+..  ++..+.++++|++|++++|
T Consensus       286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            344555555555554321  1222345555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=1.4e-05  Score=72.73  Aligned_cols=100  Identities=17%  Similarity=0.042  Sum_probs=86.2

Q ss_pred             CCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCC-eeeeeCCCCcccc-hhhhcC
Q 042413          217 HSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLK-YLKLNIPSLKCLH-SLLCTL  293 (350)
Q Consensus       217 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~-~L~l~~~~l~~lP-~~i~~l  293 (350)
                      ++  +|+++.+..+..    ..+....|.++++|+.|+|..| ++.++ ..+.++.+|+ .+.+.+ .++.++ ..+..+
T Consensus       225 ~~--~L~~l~L~~n~i----~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c  296 (329)
T 3sb4_A          225 MP--NLVSLDISKTNA----TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC  296 (329)
T ss_dssp             CT--TCCEEECTTBCC----CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred             cC--CCeEEECCCCCc----ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence            56  999999988766    5677788999999999999998 88776 5678999999 999998 788886 567899


Q ss_pred             cCCCEEEccCCcCcccch-hccccccCcEEEe
Q 042413          294 LNLETLEMPSSYIDQSPH-DIWMMQKLMHLYF  324 (350)
Q Consensus       294 ~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l  324 (350)
                      .+|+.+++++|.+..++. .|..+++|+.++.
T Consensus       297 ~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          297 DNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999999999999987 7888999998864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.91  E-value=9.5e-06  Score=67.56  Aligned_cols=93  Identities=14%  Similarity=0.109  Sum_probs=75.4

Q ss_pred             cchHHHhcCCceeeEEEccCC-CCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchhhhcCcCCCEEEccCCcC
Q 042413          238 KDYENFFKRFKYLRVLNLGSA-VLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSLLCTLLNLETLEMPSSYI  306 (350)
Q Consensus       238 ~~~~~~~~~l~~L~~L~L~~~-~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~i~~l~~L~~L~l~~~~l  306 (350)
                      ..+...+...+.|+.|+|++| .+.     .+...+...++|++|+|++|.+.     .+...+...++|++|+|++|.+
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            345567888999999999999 876     35566777899999999999986     3556667778999999999977


Q ss_pred             cc-----cchhccccccCcEEEe--eccCCC
Q 042413          307 DQ-----SPHDIWMMQKLMHLYF--YCISPC  330 (350)
Q Consensus       307 ~~-----lP~~i~~L~~L~~L~l--~~~~~~  330 (350)
                      +.     +...+...++|++|++  ++|.+.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            65     5667888889999999  666543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.78  E-value=3.7e-05  Score=63.16  Aligned_cols=80  Identities=11%  Similarity=0.143  Sum_probs=39.1

Q ss_pred             eeeEEEccCCCCCc-CccccCCCCCCCeeeeeCCC-Ccc-cchhhhcC----cCCCEEEccCC-cCcccc-hhccccccC
Q 042413          249 YLRVLNLGSAVLDQ-YPSGLENLYLLKYLKLNIPS-LKC-LHSLLCTL----LNLETLEMPSS-YIDQSP-HDIWMMQKL  319 (350)
Q Consensus       249 ~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~l~~~~-l~~-lP~~i~~l----~~L~~L~l~~~-~l~~lP-~~i~~L~~L  319 (350)
                      .|+.||++++.++. =-..+..+++|+.|+|++|. ++. --..++.+    ++|+.|++++| .++.-- ..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            35555666555441 11334555666666666653 431 11223332    24666666666 444310 134455666


Q ss_pred             cEEEeeccC
Q 042413          320 MHLYFYCIS  328 (350)
Q Consensus       320 ~~L~l~~~~  328 (350)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.31  E-value=0.00027  Score=57.97  Aligned_cols=84  Identities=13%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC-CCc-CccccCCC----CCCCeeeeeCCC-Cc--ccchhhh
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV-LDQ-YPSGLENL----YLLKYLKLNIPS-LK--CLHSLLC  291 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~-lp~~i~~l----~~L~~L~l~~~~-l~--~lP~~i~  291 (350)
                      +|+.|.+.++...   ..-+ ..+..+++|+.|+|++|. ++. --..+..+    ++|++|+|++|. ++  .+ ..+.
T Consensus        62 ~L~~LDLs~~~It---d~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIM---SIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH  136 (176)
T ss_dssp             CEEEEEEESCCCC---GGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred             eEeEEeCcCCCcc---HHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence            7999999998863   2222 446789999999999996 762 22345554    479999999985 76  23 4567


Q ss_pred             cCcCCCEEEccCC-cCccc
Q 042413          292 TLLNLETLEMPSS-YIDQS  309 (350)
Q Consensus       292 ~l~~L~~L~l~~~-~l~~l  309 (350)
                      ++++|+.|++++| .++..
T Consensus       137 ~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             GCTTCCEEEEESCTTCCCH
T ss_pred             cCCCCCEEECCCCCCCCch
Confidence            8999999999999 67653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.15  E-value=0.0016  Score=60.02  Aligned_cols=83  Identities=16%  Similarity=0.085  Sum_probs=41.0

Q ss_pred             CceeeEEEccCCCCC-cCccccC--CCCCCCeeeeeCC--C------Ccccchhh--hcCcCCCEEEccCCcCcc-cchh
Q 042413          247 FKYLRVLNLGSAVLD-QYPSGLE--NLYLLKYLKLNIP--S------LKCLHSLL--CTLLNLETLEMPSSYIDQ-SPHD  312 (350)
Q Consensus       247 l~~L~~L~L~~~~l~-~lp~~i~--~l~~L~~L~l~~~--~------l~~lP~~i--~~l~~L~~L~l~~~~l~~-lP~~  312 (350)
                      +++|+.|+|..+.+. .....+.  .+++|+.|+|+.+  .      +..+.+.+  +.+++|++|++++|.+.. .+..
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            556666666655544 1111222  4666676666421  1      21222222  245677777777664432 1222


Q ss_pred             c---cccccCcEEEeeccCC
Q 042413          313 I---WMMQKLMHLYFYCISP  329 (350)
Q Consensus       313 i---~~L~~L~~L~l~~~~~  329 (350)
                      +   ..+++|++|+++.|..
T Consensus       272 la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCC
T ss_pred             HHhCccCCCCCEEECCCCCC
Confidence            2   2466777777766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.76  E-value=0.0046  Score=57.72  Aligned_cols=91  Identities=14%  Similarity=0.079  Sum_probs=59.8

Q ss_pred             cchHHHhcCCceeeEEEccCCCCC-----cCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccc
Q 042413          238 KDYENFFKRFKYLRVLNLGSAVLD-----QYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSP  310 (350)
Q Consensus       238 ~~~~~~~~~l~~L~~L~L~~~~l~-----~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP  310 (350)
                      .+....|.++++|+.+++.++.+.     .++ ..+.++.+|+.+.+.+ .++.++. .+..+.+|+.+.+..+ +..++
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            344567777778888887776654     333 4566777788887773 4666654 3466778888887544 55554


Q ss_pred             h-hccccccCcEEEeeccCCCC
Q 042413          311 H-DIWMMQKLMHLYFYCISPCT  331 (350)
Q Consensus       311 ~-~i~~L~~L~~L~l~~~~~~~  331 (350)
                      . .|..+ +|+.+++.++....
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCB
T ss_pred             HHhCCCC-CCCEEEEcCCCCcc
Confidence            4 56666 78888887764433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.71  E-value=0.0035  Score=58.54  Aligned_cols=102  Identities=17%  Similarity=0.190  Sum_probs=55.1

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETL  299 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L  299 (350)
                      +|+++.+.. .    ...+....|.++++|+.++++.|.++.+|...-...+|+.+.+..+ ++.++. .+..+.+|+.+
T Consensus       158 ~L~~i~lp~-~----l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l  231 (401)
T 4fdw_A          158 TVQEIVFPS-T----LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI  231 (401)
T ss_dssp             CCCEEECCT-T----CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred             CceEEEeCC-C----ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence            556655543 1    1334445677777777777777666665544333455555555432 444432 22344444444


Q ss_pred             EccCC---------------------cCcccch-hccccccCcEEEeeccC
Q 042413          300 EMPSS---------------------YIDQSPH-DIWMMQKLMHLYFYCIS  328 (350)
Q Consensus       300 ~l~~~---------------------~l~~lP~-~i~~L~~L~~L~l~~~~  328 (350)
                      ++..+                     .+..++. .|..+++|+.+.+.++.
T Consensus       232 ~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          232 EIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             ECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred             ecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCcc
Confidence            44332                     3444433 56667777777776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.52  E-value=0.0037  Score=48.55  Aligned_cols=53  Identities=21%  Similarity=0.176  Sum_probs=42.7

Q ss_pred             eEEEccCCCCC--cCccccCCCCCCCeeeeeCCCCcccchhh-hcCcCCCEEEccCCc
Q 042413          251 RVLNLGSAVLD--QYPSGLENLYLLKYLKLNIPSLKCLHSLL-CTLLNLETLEMPSSY  305 (350)
Q Consensus       251 ~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~l~~lP~~i-~~l~~L~~L~l~~~~  305 (350)
                      ..++.++++++  .+|..+.  .+|++|+|++|.|+.+|... ..+.+|++|+|++|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            36788888888  8887654  46889999999999888754 778899999999884

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.13  E-value=0.0069  Score=46.97  Aligned_cols=54  Identities=9%  Similarity=0.052  Sum_probs=44.8

Q ss_pred             CeeeeeCCCCc--ccchhhhcCcCCCEEEccCCcCcccchh-ccccccCcEEEeeccCC
Q 042413          274 KYLKLNIPSLK--CLHSLLCTLLNLETLEMPSSYIDQSPHD-IWMMQKLMHLYFYCISP  329 (350)
Q Consensus       274 ~~L~l~~~~l~--~lP~~i~~l~~L~~L~l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~  329 (350)
                      ..++.++++++  .+|..+.  .+|++|+|++|.+..+|.+ |..+++|+.|++++|..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            46778888888  8997643  4799999999999999884 67799999999998743

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.39  E-value=0.15  Score=45.80  Aligned_cols=144  Identities=15%  Similarity=0.113  Sum_probs=86.8

Q ss_pred             CCcEEEEEeCChHHHhhc----ccccCCCCC-CCceEEcCCCCCChhhhhhccc--ccc-----------------CCch
Q 042413           18 NGSRVLITVTDPELLLSL----EMENGEKIR-PDSVLNGGPMIRLKHESWQFFI--LHY-----------------GSMP   73 (350)
Q Consensus        18 ~GSrIivTTR~~~v~~~~----~~~~~~~~~-~~~~~~l~~L~~~~~~s~~Lf~--f~~-----------------~GlP   73 (350)
                      ++.++|+|++...+....    .... +-+| ....+++.+|+  .+|+.+++.  |+.                 +|.|
T Consensus       163 ~~~~~il~g~~~~~l~~~l~~~~~~~-~l~~~~~~~i~l~pl~--~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P  239 (350)
T 2qen_A          163 PNLKIILTGSEVGLLHDFLKITDYES-PLYGRIAGEVLVKPFD--KDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP  239 (350)
T ss_dssp             TTEEEEEEESSHHHHHHHHCTTCTTS-TTTTCCCEEEECCCCC--HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred             CCeEEEEECCcHHHHHHHHhhcCCCC-ccccCccceeeCCCCC--HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence            478899999987653321    1100 0011 12579999999  999999987  421                 9999


Q ss_pred             hHHHHHHHHHH---HHHHh---hhc---------cCCC---ChhhHHHHhhhhcCCCCceeeHHHHHHHHHHcCCCCCCC
Q 042413           74 LENYFLGEAFL---TVWRQ---IYT---------VMEL---PFHLKVCCIYLCVFPPSIEISTRQLYQLWVAEGFIPYNG  135 (350)
Q Consensus        74 Lai~~lg~~L~---~~W~~---~l~---------y~~L---~~~lk~cfl~~a~Fp~~~~i~~~~li~~w~a~g~i~~~~  135 (350)
                      +++..++..+.   ..|..   +.+         +..+   ++..+..+..+|+   + .++...+.....+.. ... +
T Consensus       240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~-~~~-~  313 (350)
T 2qen_A          240 GWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVKG-TKI-P  313 (350)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHTT-CCC-C
T ss_pred             HHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHHh-CCC-C
Confidence            99999887543   11110   000         2233   6778888888887   2 234455555433221 000 1


Q ss_pred             hhHHHHHHHHHHHcCcceeeecCCCCCeeEEEeCHHHHHHH
Q 042413          136 EETAEHYLKELIHRGFIKVSKRRARDTIKSCYVPSFIYTSL  176 (350)
Q Consensus       136 e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~mhdli~dl~  176 (350)
                      ......+++.|++.++|....    +  .+.-.|.++++..
T Consensus       314 ~~~~~~~l~~L~~~gli~~~~----~--~y~~~~p~~~~~~  348 (350)
T 2qen_A          314 EPRLYALLENLKKMNWIVEED----N--TYKIADPVVATVL  348 (350)
T ss_dssp             HHHHHHHHHHHHHTTSEEEET----T--EEEESSHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEecC----C--EEEEecHHHHHHH
Confidence            456778999999999997652    2  2234567777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.26  E-value=0.01  Score=49.45  Aligned_cols=107  Identities=9%  Similarity=-0.002  Sum_probs=62.9

Q ss_pred             CeeEEEEecC-CCCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchh
Q 042413          221 YLQSFLNHSS-KNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSL  289 (350)
Q Consensus       221 ~Lr~L~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~  289 (350)
                      .|+.|.+..+ .+...-...+...+..-+.|+.|+|++|.+.     .+-+.+..=+.|+.|+|++|.|.     .|-+.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            6777777653 3321011234455666777888888888776     23333444466888888888775     23334


Q ss_pred             hhcCcCCCEEEccCCc---Cc-----ccchhccccccCcEEEeecc
Q 042413          290 LCTLLNLETLEMPSSY---ID-----QSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       290 i~~l~~L~~L~l~~~~---l~-----~lP~~i~~L~~L~~L~l~~~  327 (350)
                      +..=..|++|+|++|.   ++     .+-+.+..-++|+.|+++.+
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            4444568888887552   22     23334555567777777544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.81  E-value=0.034  Score=46.27  Aligned_cols=89  Identities=12%  Similarity=0.091  Sum_probs=67.7

Q ss_pred             chHHHhcCCceeeEEEccCC-CCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchhhhcCcCCCEEEccCCcCc
Q 042413          239 DYENFFKRFKYLRVLNLGSA-VLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSLLCTLLNLETLEMPSSYID  307 (350)
Q Consensus       239 ~~~~~~~~l~~L~~L~L~~~-~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~i~~l~~L~~L~l~~~~l~  307 (350)
                      .+...+.+-+.|+.|+|+++ .+.     .+-+.+..-..|+.|+|++|.|.     .|-+.+..=+.|++|+|++|.++
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            44556677889999999986 665     34556666788999999999885     44555656688999999999775


Q ss_pred             c-----cchhccccccCcEEEeecc
Q 042413          308 Q-----SPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       308 ~-----lP~~i~~L~~L~~L~l~~~  327 (350)
                      .     +-+.+..-+.|+.|+++++
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCC
Confidence            3     3345666678999999865

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.40  E-value=0.65  Score=42.64  Aligned_cols=133  Identities=14%  Similarity=0.078  Sum_probs=79.5

Q ss_pred             CcEEEEEeCChHHHhhcc---cccCCCCCCCceEEcCCCCCChhhhhhccc------ccc---------------C----
Q 042413           19 GSRVLITVTDPELLLSLE---MENGEKIRPDSVLNGGPMIRLKHESWQFFI------LHY---------------G----   70 (350)
Q Consensus        19 GSrIivTTR~~~v~~~~~---~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~------f~~---------------~----   70 (350)
                      .-.||+||++..+.....   ...  .......+++.+++  .++++++|.      |..               +    
T Consensus       179 ~v~lI~~~~~~~~~~~l~~~~~~~--~~~~~~~i~l~~l~--~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  254 (412)
T 1w5s_A          179 RIGFLLVASDVRALSYMREKIPQV--ESQIGFKLHLPAYK--SRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG  254 (412)
T ss_dssp             BEEEEEEEEETHHHHHHHHHCHHH--HTTCSEEEECCCCC--HHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred             eEEEEEEeccccHHHHHhhhcchh--hhhcCCeeeeCCCC--HHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence            345888998766543222   000  00011349999999  999999995      221               6    


Q ss_pred             --CchhHHHHHHHH-HH------------HHHHhhh-----c------cCCCChhhHHHHhhhhcCC--CCceeeHHHHH
Q 042413           71 --SMPLENYFLGEA-FL------------TVWRQIY-----T------VMELPFHLKVCCIYLCVFP--PSIEISTRQLY  122 (350)
Q Consensus        71 --GlPLai~~lg~~-L~------------~~W~~~l-----~------y~~L~~~lk~cfl~~a~Fp--~~~~i~~~~li  122 (350)
                        |.|..+..+... ..            +.+..+.     .      ++.||.+.+.++..+|.+.  .+..++..++.
T Consensus       255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~  334 (412)
T 1w5s_A          255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLR  334 (412)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence              999765554432 21            1222111     1      6889999999998888764  23356666655


Q ss_pred             HHHH--H---cCCCCCCChhHHHHHHHHHHHcCcceeee
Q 042413          123 QLWV--A---EGFIPYNGEETAEHYLKELIHRGFIKVSK  156 (350)
Q Consensus       123 ~~w~--a---~g~i~~~~e~~~~~~~~~Lv~r~li~~~~  156 (350)
                      ..+.  +   .|. ...+......+++.|++.++|....
T Consensus       335 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~  372 (412)
T 1w5s_A          335 QRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKP  372 (412)
T ss_dssp             HHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeec
Confidence            5442  2   121 1102455678999999999998754

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=94.10  E-value=0.43  Score=42.70  Aligned_cols=140  Identities=15%  Similarity=0.146  Sum_probs=87.9

Q ss_pred             CCcEEEEEeCChHHHhhc----ccccCCCCC-CCceEEcCCCCCChhhhhhccc--ccc---------------CCchhH
Q 042413           18 NGSRVLITVTDPELLLSL----EMENGEKIR-PDSVLNGGPMIRLKHESWQFFI--LHY---------------GSMPLE   75 (350)
Q Consensus        18 ~GSrIivTTR~~~v~~~~----~~~~~~~~~-~~~~~~l~~L~~~~~~s~~Lf~--f~~---------------~GlPLa   75 (350)
                      ++.++|+|+|........    .... +-++ ....+++.+|+  .+++.+++.  |+.               +|.|++
T Consensus       169 ~~~~~i~~g~~~~~l~~~l~~~~~~~-~l~~r~~~~i~l~~l~--~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G~P~~  245 (357)
T 2fna_A          169 KRIKFIMSGSEMGLLYDYLRVEDPES-PLFGRAFSTVELKPFS--REEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPGW  245 (357)
T ss_dssp             TTEEEEEEESSHHHHHHHTTTTCTTS-TTTTCCCEEEEECCCC--HHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSCHHH
T ss_pred             CCeEEEEEcCchHHHHHHHhccCCCC-ccccCccceeecCCCC--HHHHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHHH
Confidence            477999999987653321    1100 0111 12679999999  999999997  431               999999


Q ss_pred             HHHHHHHHH-----HHHH-h----h---hc-------cC--CCChhhHHHHhhhhcCCCCceeeHHHHHHHHH-HcCC-C
Q 042413           76 NYFLGEAFL-----TVWR-Q----I---YT-------VM--ELPFHLKVCCIYLCVFPPSIEISTRQLYQLWV-AEGF-I  131 (350)
Q Consensus        76 i~~lg~~L~-----~~W~-~----~---l~-------y~--~L~~~lk~cfl~~a~Fp~~~~i~~~~li~~w~-a~g~-i  131 (350)
                      +..++..+.     ..|- .    +   +.       ++  .|++..+..+..+|+   +.  +...+..... ..|. +
T Consensus       246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~~~  320 (357)
T 2fna_A          246 LTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGIEI  320 (357)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCCCC
Confidence            999987764     1221 0    1   10       11  578888999998887   32  4444443221 1231 1


Q ss_pred             CCCChhHHHHHHHHHHHcCcceeeecCCCCCeeEEE-eCHHHHHH
Q 042413          132 PYNGEETAEHYLKELIHRGFIKVSKRRARDTIKSCY-VPSFIYTS  175 (350)
Q Consensus       132 ~~~~e~~~~~~~~~Lv~r~li~~~~~~~~g~~~~~~-mhdli~dl  175 (350)
                         .......+++.|++.++|....    +   .|+ .|.++++.
T Consensus       321 ---~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~  355 (357)
T 2fna_A          321 ---SDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLA  355 (357)
T ss_dssp             ---CHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHH
T ss_pred             ---CHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHh
Confidence               1456778999999999997642    2   244 57787765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.51  E-value=0.24  Score=45.59  Aligned_cols=84  Identities=13%  Similarity=0.059  Sum_probs=60.4

Q ss_pred             HHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccch-hccccc
Q 042413          241 ENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPH-DIWMMQ  317 (350)
Q Consensus       241 ~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~  317 (350)
                      ...|..+.+|+.+.+..+ ++.++ ..+.++.+|+.+.+..+ ++.++. .+..+.+|+.+++..+ +..++. .|..+.
T Consensus       290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence            355667777888877654 55554 45667888888888644 777754 4577889999988765 666655 677888


Q ss_pred             cCcEEEeecc
Q 042413          318 KLMHLYFYCI  327 (350)
Q Consensus       318 ~L~~L~l~~~  327 (350)
                      +|+.+++..+
T Consensus       367 ~L~~i~lp~~  376 (394)
T 4fs7_A          367 NLKKVELPKR  376 (394)
T ss_dssp             TCCEEEEEGG
T ss_pred             CCCEEEECCC
Confidence            8999988764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.46  E-value=0.13  Score=47.31  Aligned_cols=99  Identities=17%  Similarity=0.186  Sum_probs=68.2

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~  298 (350)
                      .|+++.+....     ..+....|.+++.|+.+.+. +.++.++ ..+.++.+|+.+.+..+ ++.+.. .+..+.+|+.
T Consensus       266 ~L~~i~lp~~~-----~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          266 YLASVKMPDSV-----VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             SCCEEECCTTC-----CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             cccEEeccccc-----ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            66666654332     23444667778888888875 3466665 45667888888888754 666654 4577888999


Q ss_pred             EEccCCcCcccch-hccccccCcEEEeecc
Q 042413          299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYCI  327 (350)
Q Consensus       299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~  327 (350)
                      +.+..+ +..++. .|.++.+|+.+++.++
T Consensus       339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          339 IAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             EEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             EEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            888654 666654 6778888999988765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.17  E-value=0.5  Score=43.03  Aligned_cols=99  Identities=10%  Similarity=0.122  Sum_probs=65.4

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~  298 (350)
                      .|+.+.+...-     ..+....|.++..|+.+.+..+ ++.++ ..+.++.+|+.+.+.++.++.+++ .+..+.+|+.
T Consensus       241 ~L~~i~lp~~v-----~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          241 ALDEIAIPKNV-----TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS  314 (379)
T ss_dssp             SCCEEEECTTC-----CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred             cceEEEcCCCc-----cEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence            66666664432     2344456777777777777543 55554 345677888888888777877764 4567788888


Q ss_pred             EEccCCcCcccch-hccccccCcEEEeec
Q 042413          299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYC  326 (350)
Q Consensus       299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~  326 (350)
                      +.+..+ ++.++. .|.+.++|+.+.+..
T Consensus       315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          315 VTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             EEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            888653 556654 566777788777754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.74  E-value=0.47  Score=43.59  Aligned_cols=85  Identities=14%  Similarity=0.217  Sum_probs=62.7

Q ss_pred             HHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hcccccc
Q 042413          241 ENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMMQK  318 (350)
Q Consensus       241 ~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~  318 (350)
                      ...|.++..|+.+.+..+...--...+.++..|+.+.+. +.++.++.. +..+.+|+.+++..+ ++.+++ .|..+.+
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             cceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            456788888998888665433223456778899999886 457777754 467899999999764 666655 6788899


Q ss_pred             CcEEEeecc
Q 042413          319 LMHLYFYCI  327 (350)
Q Consensus       319 L~~L~l~~~  327 (350)
                      |+.+.+..+
T Consensus       336 L~~i~ip~s  344 (394)
T 4gt6_A          336 LERIAIPSS  344 (394)
T ss_dssp             CCEEEECTT
T ss_pred             CCEEEECcc
Confidence            999999654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.48  E-value=0.54  Score=42.81  Aligned_cols=87  Identities=20%  Similarity=0.088  Sum_probs=64.5

Q ss_pred             chHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccch-hccc
Q 042413          239 DYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPH-DIWM  315 (350)
Q Consensus       239 ~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~-~i~~  315 (350)
                      +....|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+.++.+..+++ .|..
T Consensus       231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~  308 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD  308 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred             EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence            34456777788888887655 55444 34566788888888653 666665 35778999999998888888876 6778


Q ss_pred             cccCcEEEeecc
Q 042413          316 MQKLMHLYFYCI  327 (350)
Q Consensus       316 L~~L~~L~l~~~  327 (350)
                      ..+|+.+.+..+
T Consensus       309 c~~L~~i~lp~~  320 (379)
T 4h09_A          309 CVKLSSVTLPTA  320 (379)
T ss_dssp             CTTCCEEECCTT
T ss_pred             CCCCCEEEcCcc
Confidence            899999999653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=90.87  E-value=0.5  Score=43.38  Aligned_cols=94  Identities=16%  Similarity=0.168  Sum_probs=68.4

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~  298 (350)
                      +|+.+.+..+-     ..+....|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ ++.++. .+..+.+|+.
T Consensus       298 ~L~~i~l~~~i-----~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  370 (394)
T 4fs7_A          298 SLTEVKLLDSV-----KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK  370 (394)
T ss_dssp             TCCEEEECTTC-----CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred             ccccccccccc-----ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence            77777775432     3455678999999999999754 77665 56788999999999776 777754 5678899999


Q ss_pred             EEccCCcCcccchhccccccCcEE
Q 042413          299 LEMPSSYIDQSPHDIWMMQKLMHL  322 (350)
Q Consensus       299 L~l~~~~l~~lP~~i~~L~~L~~L  322 (350)
                      +++..+ +..+...+.+.++|+.+
T Consensus       371 i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          371 VELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             EEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             EEECCC-CEEhhheecCCCCCcEE
Confidence            998765 33344566666666653

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=80.98  E-value=2.1  Score=35.44  Aligned_cols=56  Identities=13%  Similarity=0.166  Sum_probs=39.6

Q ss_pred             ChhhHHHHHhhcCCCCCCcEEEEEeCChHHH-hhcccccCCCCCCCceEEcCCCCCChhhhhhccc
Q 042413            2 TFQQWDNLEQVLPDNQNGSRVLITVTDPELL-LSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI   66 (350)
Q Consensus         2 ~~~~w~~l~~~l~~~~~GSrIivTTR~~~v~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~   66 (350)
                      +.+.++.+...+.....+.+||+||+..... ......       ...+++.+++  .++..+++.
T Consensus       139 ~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r-------~~~i~l~~l~--~~e~~~~l~  195 (250)
T 1njg_A          139 SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR-------CLQFHLKALD--VEQIRHQLE  195 (250)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-------SEEEECCCCC--HHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH-------hhhccCCCCC--HHHHHHHHH
Confidence            3456777777776656688999999875432 111111       1689999999  999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.26
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.26
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.22
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.18
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.17
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.13
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.11
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.11
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.09
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.04
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.03
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.02
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.99
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.99
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.98
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.96
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.96
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.96
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.94
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.45
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.39
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.33
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.12
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.69
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.56
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.67
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.88

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.62  E-value=1e-16  Score=141.58  Aligned_cols=91  Identities=13%  Similarity=0.127  Sum_probs=76.6

Q ss_pred             CChhhHHHHHhhcCCCCCCcEEEEEeCChHHHhhcccccCCCCCCCceEEcCCCCCChhhhhhccc---ccc--------
Q 042413            1 MTFQQWDNLEQVLPDNQNGSRVLITVTDPELLLSLEMENGEKIRPDSVLNGGPMIRLKHESWQFFI---LHY--------   69 (350)
Q Consensus         1 ~~~~~w~~l~~~l~~~~~GSrIivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~s~~Lf~---f~~--------   69 (350)
                      |+.+.|+.+.      ..|||||||||++.|+..+....       .+|++++|+  ++|||+||+   |..        
T Consensus       145 ~~~~~~~~~~------~~~srilvTTR~~~v~~~~~~~~-------~~~~l~~L~--~~ea~~Lf~~~~~~~~~~~~~~~  209 (277)
T d2a5yb3         145 VQEETIRWAQ------ELRLRCLVTTRDVEISNAASQTC-------EFIEVTSLE--IDECYDFLEAYGMPMPVGEKEED  209 (277)
T ss_dssp             CCHHHHHHHH------HTTCEEEEEESBGGGGGGCCSCE-------EEEECCCCC--HHHHHHHHHHTSCCCC--CHHHH
T ss_pred             hHHhhhhhhc------ccCceEEEEeehHHHHHhcCCCC-------ceEECCCCC--HHHHHHHHHHHhCCccCchhhHH
Confidence            6677776553      25899999999999998876542       789999999  999999998   443        


Q ss_pred             ---------CCchhHHHHHHHHHH----HHHHhhhc-----------------cCCCChhhHHHHhh
Q 042413           70 ---------GSMPLENYFLGEAFL----TVWRQIYT-----------------VMELPFHLKVCCIY  106 (350)
Q Consensus        70 ---------~GlPLai~~lg~~L~----~~W~~~l~-----------------y~~L~~~lk~cfl~  106 (350)
                               +|+|||++++|+.|+    ++|.+..+                 |++||+++|+||-+
T Consensus       210 ~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~~~v~~il~~sY~~L~~~lk~c~~~  276 (277)
T d2a5yb3         210 VLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEV  276 (277)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccHHHHHHHHh
Confidence                     999999999999998    67766544                 99999999999965

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=3.6e-14  Score=109.49  Aligned_cols=105  Identities=17%  Similarity=0.197  Sum_probs=89.6

Q ss_pred             eEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEcc
Q 042413          223 QSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMP  302 (350)
Q Consensus       223 r~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~  302 (350)
                      |.|.+.++...    ..  +.+..+++|+.|++++|.++.+|..++.+++|++|++++|.++.+|. ++.+++|++|+++
T Consensus         1 R~L~Ls~n~l~----~l--~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT----VL--CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS----SC--CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred             CEEEcCCCCCC----CC--cccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECC
Confidence            56777777763    22  23788999999999999999999999999999999999999999974 8999999999999


Q ss_pred             CCcCcccch--hccccccCcEEEeeccCCCCCCC
Q 042413          303 SSYIDQSPH--DIWMMQKLMHLYFYCISPCTSKN  334 (350)
Q Consensus       303 ~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~~  334 (350)
                      +|.+..+|.  .++.+++|++|++++|..+....
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCcCcc
Confidence            999988874  68899999999999987765443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.4e-13  Score=106.08  Aligned_cols=94  Identities=23%  Similarity=0.230  Sum_probs=80.1

Q ss_pred             eEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCC
Q 042413          251 RVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       251 ~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                      |+|+|++|.++.+| .++.+++|++|++++|.++.+|+.++.+++|++|++++|.+..+| +++++++|++|++++|...
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            68999999999887 489999999999999999999999999999999999999999997 4999999999999999776


Q ss_pred             CCCCCcccccccccccc
Q 042413          331 TSKNYSSSLKNLIFISA  347 (350)
Q Consensus       331 ~~~~~~~~l~~L~~L~~  347 (350)
                      ..+. +..+.++++|++
T Consensus        79 ~~~~-~~~l~~~~~L~~   94 (124)
T d1dcea3          79 QSAA-IQPLVSCPRLVL   94 (124)
T ss_dssp             SSST-TGGGGGCTTCCE
T ss_pred             CCCC-chhhcCCCCCCE
Confidence            5532 233444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.8e-13  Score=109.48  Aligned_cols=112  Identities=14%  Similarity=0.063  Sum_probs=92.6

Q ss_pred             ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhh-hc
Q 042413          214 SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLL-CT  292 (350)
Q Consensus       214 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i-~~  292 (350)
                      ..+..  ++|.|.+.++.+.    .+ +..+..+++|++|+|++|.++.++ .+..+++|++|++++|.++.+|+.+ ..
T Consensus        14 ~~n~~--~lr~L~L~~n~I~----~i-~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          14 YTNAV--RDRELDLRGYKIP----VI-ENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             EECTT--SCEEEECTTSCCC----SC-CCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             ccCcC--cCcEEECCCCCCC----cc-CccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccc
Confidence            33455  8999999998874    22 345677899999999999999885 5889999999999999999998765 67


Q ss_pred             CcCCCEEEccCCcCcccch--hccccccCcEEEeeccCCCCCC
Q 042413          293 LLNLETLEMPSSYIDQSPH--DIWMMQKLMHLYFYCISPCTSK  333 (350)
Q Consensus       293 l~~L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~  333 (350)
                      +++|++|++++|.+..+++  .+..+++|++|++++|.....+
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             ccccccceeccccccccccccccccccccchhhcCCCcccccc
Confidence            9999999999998888875  6788999999999998765543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=2.4e-11  Score=101.22  Aligned_cols=138  Identities=18%  Similarity=0.164  Sum_probs=107.7

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      ..+++.|.+.++.. ..+....++  +|+.|.+..+...    ..  +.+.+++.|+.|+++++.+..++ .+..+++|+
T Consensus        61 l~nL~~L~Ls~N~l~~~~~l~~l~--~L~~L~l~~n~~~----~~--~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~  131 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITPLKNLT--KLVDILMNNNQIA----DI--TPLANLTNLTGLTLFNNQITDID-PLKNLTNLN  131 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCT--TCCEEECCSSCCC----CC--GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCS
T ss_pred             CCCcCcCccccccccCcccccCCc--ccccccccccccc----cc--ccccccccccccccccccccccc-ccchhhhhH
Confidence            46788899988877 444455666  9999999887763    22  24788999999999998877654 478899999


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L  348 (350)
                      +|++++|.+..+| .+..+.+|+.|++.+|.+..+|. ++++++|++|++++|.....    +.+.+|++|+.|
T Consensus       132 ~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i----~~l~~L~~L~~L  199 (199)
T d2omxa2         132 RLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDI----SVLAKLTNLESL  199 (199)
T ss_dssp             EEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC----GGGGGCTTCSEE
T ss_pred             Hhhhhhhhhcccc-cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCC----ccccCCCCCCcC
Confidence            9999999998876 48899999999999998888874 89999999999999865442    234555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.8e-12  Score=103.45  Aligned_cols=102  Identities=15%  Similarity=0.060  Sum_probs=83.7

Q ss_pred             hcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhc-cccccCcEE
Q 042413          244 FKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDI-WMMQKLMHL  322 (350)
Q Consensus       244 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i-~~L~~L~~L  322 (350)
                      |.+...||.|+|++|.|+.+|.....+.+|++|++++|.|+.++ .+..+++|++|++++|.+..+|..+ ..+++|++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            56777899999999999999876778999999999999999995 5899999999999999999998765 579999999


Q ss_pred             EeeccCCCCCCCCcccccccccccc
Q 042413          323 YFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       323 ~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      ++++|....... ...+..+++|++
T Consensus        93 ~L~~N~i~~~~~-l~~l~~l~~L~~  116 (162)
T d1a9na_          93 ILTNNSLVELGD-LDPLASLKSLTY  116 (162)
T ss_dssp             ECCSCCCCCGGG-GGGGGGCTTCCE
T ss_pred             eecccccccccc-ccccccccccch
Confidence            999997655432 223444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.1e-11  Score=106.20  Aligned_cols=58  Identities=22%  Similarity=0.153  Sum_probs=25.5

Q ss_pred             CCCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchhccccccCcEEEeecc
Q 042413          270 LYLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       270 l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~  327 (350)
                      +++|+++++++|+++.+|.. ++.+++|++|+|++|.++.+|+++..+++|+.|++++|
T Consensus       147 l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             cccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCC
Confidence            44444444444444433322 34444444444444444444444444444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=1.2e-11  Score=102.38  Aligned_cols=105  Identities=17%  Similarity=0.159  Sum_probs=72.7

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccchh-hhcCcCCCE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHSL-LCTLLNLET  298 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~  298 (350)
                      +++.|.+.++.+.   .......|..+++|+.|+|++|.+..++ ..+..+++|++|+|++|+++.+|+. +..+++|++
T Consensus        30 ~l~~L~Ls~N~i~---~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          30 HTTELLLNDNELG---RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TCSEEECCSCCCC---SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCEEEeCCCCCc---ccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccc
Confidence            6777777777662   2234456677777777777777776443 5666677777777777777777553 567777777


Q ss_pred             EEccCCcCcccch-hccccccCcEEEeeccC
Q 042413          299 LEMPSSYIDQSPH-DIWMMQKLMHLYFYCIS  328 (350)
Q Consensus       299 L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~  328 (350)
                      |+|++|.+..+|+ .|..+++|++|++++|.
T Consensus       107 L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cccCCccccccCHHHhcCCcccccccccccc
Confidence            7777777777765 45677777777777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=6.5e-11  Score=98.48  Aligned_cols=137  Identities=20%  Similarity=0.107  Sum_probs=107.5

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCe
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKY  275 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~  275 (350)
                      .+++.|.+..+.+ ++.....++  +|++|.+.++...    ...  .+.++++|+.|++++|.+..+|. ++++++|++
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~--nL~~L~Ls~N~l~----~~~--~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~  110 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLN--NLTQINFSNNQLT----DIT--PLKNLTKLVDILMNNNQIADITP-LANLTNLTG  110 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCT--TCCEEECCSSCCC----CCG--GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             cCCCEEECCCCCCCCccccccCC--CcCcCcccccccc----Ccc--cccCCcccccccccccccccccc-ccccccccc
Confidence            4678888887776 444444567  9999999998763    333  38899999999999999988874 889999999


Q ss_pred             eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413          276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L  348 (350)
                      |+++++.+..++ .+..+++|+.|++++|.+..+| .+..+++|+.|++.+|......    .++++++|+.|
T Consensus       111 L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~----~l~~l~~L~~L  177 (199)
T d2omxa2         111 LTLFNNQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK----PLANLTTLERL  177 (199)
T ss_dssp             EECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG----GGTTCTTCCEE
T ss_pred             cccccccccccc-ccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc----cccCCCCCCEE
Confidence            999999887765 4788999999999999888876 5889999999999998665432    24444444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=7.1e-11  Score=99.12  Aligned_cols=138  Identities=22%  Similarity=0.250  Sum_probs=105.7

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      ..+++.|.+..+.+ ..+....++  +|+.|.+.++...    . + +.+..++.|+.|++++|.+..++ .+..+++|+
T Consensus        67 l~~L~~L~L~~n~i~~l~~~~~l~--~L~~L~l~~n~i~----~-l-~~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~  137 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIKPLANLK--NLGWLFLDENKVK----D-L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLE  137 (210)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCT--TCCEEECCSSCCC----C-G-GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCC
T ss_pred             CCCCCEEeCCCccccCccccccCc--ccccccccccccc----c-c-ccccccccccccccccccccccc-ccccccccc
Confidence            46788888888877 444444566  8999998888762    2 2 24778889999999998887665 577888899


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L  348 (350)
                      .+++++|.++.++ .+..+++|+++++++|.+..++. +.++++|+.|++++|.....    +.+.+|++|+.|
T Consensus       138 ~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l----~~l~~l~~L~~L  205 (210)
T d1h6ta2         138 SLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL----RALAGLKNLDVL  205 (210)
T ss_dssp             EEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC----GGGTTCTTCSEE
T ss_pred             ccccccccccccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCC----hhhcCCCCCCEE
Confidence            9999988887765 47789999999999998888875 88999999999999865432    245555565554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.8e-11  Score=104.59  Aligned_cols=129  Identities=19%  Similarity=0.135  Sum_probs=77.4

Q ss_pred             CCCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYL  272 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~  272 (350)
                      +..+++|.+..+.+ .++.  ...++  +|+.|.+.++...    .+.  .+..+++|++|+|++|.++..|..+..+++
T Consensus        30 p~~l~~L~Ls~N~i~~l~~~~f~~l~--~L~~L~L~~N~l~----~l~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~  101 (266)
T d1p9ag_          30 PKDTTILHLSENLLYTFSLATLMPYT--RLTQLNLDRAELT----KLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPA  101 (266)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCT--TCCEEECTTSCCC----EEE--CCSCCTTCCEEECCSSCCSSCCCCTTTCTT
T ss_pred             CcCCCEEECcCCcCCCcCHHHhhccc--ccccccccccccc----ccc--cccccccccccccccccccccccccccccc
Confidence            34566666666655 2222  22344  6666666666542    111  234556666666666666555555555555


Q ss_pred             CCeeeeeC------------------------CCCcccchhh-hcCcCCCEEEccCCcCcccch-hccccccCcEEEeec
Q 042413          273 LKYLKLNI------------------------PSLKCLHSLL-CTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYC  326 (350)
Q Consensus       273 L~~L~l~~------------------------~~l~~lP~~i-~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~  326 (350)
                      |++|++++                        |.+..+|+.+ ..+.+|+.|++++|.+..+|. .+..+++|++|++++
T Consensus       102 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeeccc
Confidence            55555554                        4445454433 457778888888887777765 467788888888888


Q ss_pred             cCCCCC
Q 042413          327 ISPCTS  332 (350)
Q Consensus       327 ~~~~~~  332 (350)
                      |.+...
T Consensus       182 N~L~~l  187 (266)
T d1p9ag_         182 NSLYTI  187 (266)
T ss_dssp             SCCCCC
T ss_pred             CCCccc
Confidence            866544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.17  E-value=4.7e-11  Score=105.85  Aligned_cols=145  Identities=14%  Similarity=0.029  Sum_probs=110.9

Q ss_pred             CCeeEEEEecCccchhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcC-ccccCCCCCCCe
Q 042413          197 ANVKRCFILKDLIDFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQY-PSGLENLYLLKY  275 (350)
Q Consensus       197 ~~~r~L~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~  275 (350)
                      .+++.+.+..+..........+  +++.|.+.++..    ....+..|..++.+++|++++|.++.+ |..+.++++|++
T Consensus       150 ~~L~~l~l~~n~l~~l~~~~~~--~L~~L~l~~n~~----~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         150 KKLSYIRIADTNITTIPQGLPP--SLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             TTCCEEECCSSCCCSCCSSCCT--TCSEEECTTSCC----CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             cccCccccccCCccccCcccCC--ccCEEECCCCcC----CCCChhHhhcccccccccccccccccccccccccccccee
Confidence            4567777777665222222345  899999888776    445667889999999999999999866 467788999999


Q ss_pred             eeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchh-------ccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          276 LKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHD-------IWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       276 L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~-------i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      |+|++|+++.+|.++..+++|++|++++|+++.++..       ...+.+|+.|++++|......-.|..++.+.....
T Consensus       224 L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~  302 (305)
T d1xkua_         224 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  302 (305)
T ss_dssp             EECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             eecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcc
Confidence            9999999999999999999999999999999988753       34567899999999876443334555555544443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.13  E-value=4.7e-11  Score=106.31  Aligned_cols=126  Identities=15%  Similarity=0.100  Sum_probs=72.9

Q ss_pred             CeeEEEEecCcc----chhh-ccCCCCCCeeEEEEec-CCCCCCCccchHHHhcCCceeeEEEccCCCCCc-CccccCCC
Q 042413          198 NVKRCFILKDLI----DFFS-SLKHSDMYLQSFLNHS-SKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQ-YPSGLENL  270 (350)
Q Consensus       198 ~~r~L~l~~~~~----~~~~-~~~~~~~~Lr~L~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l  270 (350)
                      +++.|.+.++..    .+|. ...++  +|++|.+.+ +..    .+.+|..+.++++|++|+|++|.+.. .|..+..+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~--~L~~L~Ls~~N~l----~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~  124 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLP--YLNFLYIGGINNL----VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCT--TCSEEEEEEETTE----ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCc--ccccccccccccc----ccccccccccccccchhhhccccccccccccccch
Confidence            566666666544    1222 22444  666666654 332    22344556666666666666666653 33445566


Q ss_pred             CCCCeeeeeCCCCc-ccchhhhcCcCCCEEEccCCcC-cccchhccccccC-cEEEeeccCC
Q 042413          271 YLLKYLKLNIPSLK-CLHSLLCTLLNLETLEMPSSYI-DQSPHDIWMMQKL-MHLYFYCISP  329 (350)
Q Consensus       271 ~~L~~L~l~~~~l~-~lP~~i~~l~~L~~L~l~~~~l-~~lP~~i~~L~~L-~~L~l~~~~~  329 (350)
                      .+|+++++++|.+. .+|.+++++++|+++++++|.+ ..+|..++.+.++ +.+++++|..
T Consensus       125 ~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             hhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            66666666666543 5566666666666666666633 3566666666654 5566655543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=1.9e-10  Score=96.48  Aligned_cols=136  Identities=18%  Similarity=0.112  Sum_probs=106.7

Q ss_pred             CeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCee
Q 042413          198 NVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYL  276 (350)
Q Consensus       198 ~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L  276 (350)
                      .++++.+..+.+ .......++  +|+.|.+.++...    ...  .+..+++|++|++++|.++.+| .+..+++|+.|
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~--~L~~L~L~~n~i~----~l~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLP--NVTKLFLNGNKLT----DIK--PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSL  117 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCT--TCCEEECCSSCCC----CCG--GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEE
T ss_pred             CccEEECcCCCCCCchhHhhCC--CCCEEeCCCcccc----Ccc--ccccCccccccccccccccccc-ccccccccccc
Confidence            577777777776 444444577  9999999998763    232  3678999999999999999887 58899999999


Q ss_pred             eeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413          277 KLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       277 ~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L  348 (350)
                      ++++|.+..++ .+..+++|+.+++++|.+..++ .+.++++|+.+++++|......    .+.+|++|+.|
T Consensus       118 ~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~----~l~~l~~L~~L  183 (210)
T d1h6ta2         118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV----PLAGLTKLQNL  183 (210)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG----GGTTCTTCCEE
T ss_pred             ccccccccccc-cccccccccccccccccccccc-cccccccccccccccccccccc----cccCCCCCCEE
Confidence            99999988876 4889999999999999887765 5788999999999998765432    24445555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.3e-10  Score=101.96  Aligned_cols=89  Identities=21%  Similarity=0.339  Sum_probs=41.6

Q ss_pred             HhcCCceeeEEEccCCCCCcCc-cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCccc-chhccccccC
Q 042413          243 FFKRFKYLRVLNLGSAVLDQYP-SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQS-PHDIWMMQKL  319 (350)
Q Consensus       243 ~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~l-P~~i~~L~~L  319 (350)
                      .+..+.+|+.+++++|.++.+| ..+..+.+|+.|++++|.++.+|+ .+..+++|+.+++++|.+..+ |..|..+++|
T Consensus       124 ~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             ccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhc
Confidence            3334444444444444444443 233444455555555555544432 234455555555555544333 3445555555


Q ss_pred             cEEEeeccCCCC
Q 042413          320 MHLYFYCISPCT  331 (350)
Q Consensus       320 ~~L~l~~~~~~~  331 (350)
                      ++|++++|....
T Consensus       204 ~~L~l~~N~i~~  215 (284)
T d1ozna_         204 MTLYLFANNLSA  215 (284)
T ss_dssp             CEEECCSSCCSC
T ss_pred             cccccccccccc
Confidence            555555554433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.09  E-value=5.6e-11  Score=98.33  Aligned_cols=127  Identities=15%  Similarity=0.113  Sum_probs=97.8

Q ss_pred             CCCCeeEEEEecCcc-chh-h--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCC
Q 042413          195 SLANVKRCFILKDLI-DFF-S--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLEN  269 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~-~~~-~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~  269 (350)
                      .+..+++|.+..+.+ ... .  ...++  +|+.|.+.++..    ....+..|..++.|+.|+|++|.++.+| ..+.+
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~--~L~~L~L~~N~i----~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~  100 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLP--HLVKLELKRNQL----TGIEPNAFEGASHIQELQLGENKIKEISNKMFLG  100 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCT--TCCEEECCSSCC----CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTT
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCc--eEeeeecccccc----ccccccccccccccceeeeccccccccCHHHHhC
Confidence            457899999999988 222 2  23456  999999999887    5567788999999999999999999886 46789


Q ss_pred             CCCCCeeeeeCCCCcccchh-hhcCcCCCEEEccCCcCcccchhccccccCcEEEeecc
Q 042413          270 LYLLKYLKLNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       270 l~~L~~L~l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~  327 (350)
                      +++|++|+|++|.|+.+|+. +..+++|++|++++|.+...+....-...++.+.+..+
T Consensus       101 l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~  159 (192)
T d1w8aa_         101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGG  159 (192)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGG
T ss_pred             CCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCC
Confidence            99999999999999999765 68899999999999966554432222223444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.04  E-value=7.2e-10  Score=98.03  Aligned_cols=68  Identities=16%  Similarity=0.191  Sum_probs=54.2

Q ss_pred             cccCCCCCCCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCC
Q 042413          265 SGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       265 ~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ..+..++++++|++++|.+..+ |..+..+++|++|+|++|.++.+|.++.++++|++|++++|.+...
T Consensus       189 ~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             hHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCcc
Confidence            3455667777888888888766 4456788899999999998889998899999999999988876543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.2e-10  Score=98.05  Aligned_cols=127  Identities=14%  Similarity=0.069  Sum_probs=100.3

Q ss_pred             CCeeEEEEecCcc-chhh--ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-cccCCCCC
Q 042413          197 ANVKRCFILKDLI-DFFS--SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-SGLENLYL  272 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~  272 (350)
                      .+++.+.+..+.. ....  .....  +|+++.+.++..    ..+++..|..+++|+.|++++|.++.+| ..+.++++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~l~l~~N~l----~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLA--ALQYLYLQDNAL----QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCT--TCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ccCCEEecCCcccccccccccchhc--ccchhhhccccc----cccChhHhccccchhhcccccCcccccchhhhccccc
Confidence            5677888777665 2222  22344  888888888876    4556677888999999999999998765 56778999


Q ss_pred             CCeeeeeCCCCccc-chhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCC
Q 042413          273 LKYLKLNIPSLKCL-HSLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       273 L~~L~l~~~~l~~l-P~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~  329 (350)
                      |+++++++|.+..+ |..+..+++|++|++++|.+..+|. .++.+++|++|++++|..
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            99999999998866 6788999999999999998887775 678899999999988753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.02  E-value=7.5e-10  Score=100.58  Aligned_cols=138  Identities=17%  Similarity=0.159  Sum_probs=92.0

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCc-----------
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYP-----------  264 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-----------  264 (350)
                      ..++.+.+.++.. +.+....++  +++.+.+.++...    ...  .+..+++|+.|+++++.+..++           
T Consensus       219 ~~L~~L~l~~n~l~~~~~l~~l~--~L~~L~l~~n~l~----~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l  290 (384)
T d2omza2         219 TNLDELSLNGNQLKDIGTLASLT--NLTDLDLANNQIS----NLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNL  290 (384)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCT--TCSEEECCSSCCC----CCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             CCCCEEECCCCCCCCcchhhccc--ccchhccccCccC----CCC--cccccccCCEeeccCcccCCCCccccccccccc
Confidence            4566666666655 333333444  6666666665542    111  2455555666666555444322           


Q ss_pred             ----------cccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCC
Q 042413          265 ----------SGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKN  334 (350)
Q Consensus       265 ----------~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~  334 (350)
                                ..+..+.++++|++++|+++.+++ +..+++|++|++++|.++.+| .++.+++|++|++++|.....+.
T Consensus       291 ~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             ECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             cccccccccccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh
Confidence                      235667788999999999988864 889999999999999998887 58999999999999987665422


Q ss_pred             Cccccccccccccc
Q 042413          335 YSSSLKNLIFISAL  348 (350)
Q Consensus       335 ~~~~l~~L~~L~~L  348 (350)
                          +.+|++|+.|
T Consensus       369 ----l~~l~~L~~L  378 (384)
T d2omza2         369 ----LANLTRITQL  378 (384)
T ss_dssp             ----GTTCTTCSEE
T ss_pred             ----hccCCCCCEe
Confidence                4555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.99  E-value=1.6e-12  Score=108.45  Aligned_cols=105  Identities=17%  Similarity=0.143  Sum_probs=84.8

Q ss_pred             CCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcC
Q 042413          216 KHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLN  295 (350)
Q Consensus       216 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~  295 (350)
                      .++  +|+.|.+.++.+.    .+  +.+..+++|+.|+|++|.++.+|.....+.+|++|++++|.++.++ .+..+++
T Consensus        46 ~L~--~L~~L~Ls~n~I~----~i--~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~  116 (198)
T d1m9la_          46 TLK--ACKHLALSTNNIE----KI--SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN  116 (198)
T ss_dssp             HTT--TCCEEECSEEEES----CC--CCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHH
T ss_pred             ccc--ccceeECcccCCC----Cc--ccccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccc
Confidence            455  8899988887763    22  2367788999999999998888866666678999999999998875 4788899


Q ss_pred             CCEEEccCCcCcccch--hccccccCcEEEeeccCC
Q 042413          296 LETLEMPSSYIDQSPH--DIWMMQKLMHLYFYCISP  329 (350)
Q Consensus       296 L~~L~l~~~~l~~lP~--~i~~L~~L~~L~l~~~~~  329 (350)
                      |++|++++|.+..++.  .+..+++|+.|++++|..
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCcc
Confidence            9999999998888874  688899999999988754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=6.1e-10  Score=101.19  Aligned_cols=126  Identities=13%  Similarity=0.093  Sum_probs=94.5

Q ss_pred             CCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCC----------------CccchHHHhcCCceeeEEEccCCC
Q 042413          197 ANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHL----------------NSKDYENFFKRFKYLRVLNLGSAV  259 (350)
Q Consensus       197 ~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~----------------~~~~~~~~~~~l~~L~~L~L~~~~  259 (350)
                      ..++.+.+..+.. ..+....++  +|++|.+.++.....                ..-.....+..++.++.|++++|.
T Consensus       241 ~~L~~L~l~~n~l~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~  318 (384)
T d2omza2         241 TNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN  318 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCT--TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred             cccchhccccCccCCCCcccccc--cCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCC
Confidence            4566666666555 333344445  666666655543210                000011346788899999999999


Q ss_pred             CCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeecc
Q 042413          260 LDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       260 l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~  327 (350)
                      ++.++. +..+++|++|++++|+++.+| .++.+++|++|++++|.+..+|+ +.++++|+.|++++|
T Consensus       319 l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         319 ISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            998864 888999999999999999987 58999999999999999999886 899999999999876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.98  E-value=4e-10  Score=100.17  Aligned_cols=120  Identities=16%  Similarity=0.185  Sum_probs=96.3

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccC-CCCC-cCccccCCCCCCCeeeeeCCCCccc-chhhhcCcCCC
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGS-AVLD-QYPSGLENLYLLKYLKLNIPSLKCL-HSLLCTLLNLE  297 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~-~lp~~i~~l~~L~~L~l~~~~l~~l-P~~i~~l~~L~  297 (350)
                      +++.|.+.++....  ...+|+.+.++++|++|+|++ |.+. .+|.+|++|++|++|+|++|++..+ |..+..+.+|+
T Consensus        51 ~v~~L~L~~~~l~g--~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCC--CCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            78999999887631  224567889999999999987 6776 8999999999999999999998855 55678899999


Q ss_pred             EEEccCC-cCcccchhccccccCcEEEeeccCCCCCCCCccccccccc
Q 042413          298 TLEMPSS-YIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIF  344 (350)
Q Consensus       298 ~L~l~~~-~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~  344 (350)
                      .++++.| ....+|..++++++|+.+++++|...+.  .|..+.++..
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~--ip~~~~~l~~  174 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA--IPDSYGSFSK  174 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE--CCGGGGCCCT
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccc--cccccccccc
Confidence            9999999 6677899999999999999998866543  3444444333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=1.4e-09  Score=92.03  Aligned_cols=137  Identities=15%  Similarity=0.142  Sum_probs=99.7

Q ss_pred             CCCeeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLK  274 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~  274 (350)
                      ..+++.+.+..+.. .++....++  +|+++.+..+...    .  ...+...+.++.+.++++.+...+ .+...++|+
T Consensus        84 l~~l~~l~~~~n~~~~i~~l~~l~--~L~~l~l~~~~~~----~--~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~  154 (227)
T d1h6ua2          84 LTKITELELSGNPLKNVSAIAGLQ--SIKTLDLTSTQIT----D--VTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQ  154 (227)
T ss_dssp             CCSCCEEECCSCCCSCCGGGTTCT--TCCEEECTTSCCC----C--CGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCC
T ss_pred             cccccccccccccccccccccccc--ccccccccccccc----c--cchhccccchhhhhchhhhhchhh-hhccccccc
Confidence            35778888877766 455555667  9999998877652    1  234667788888888888876543 366778899


Q ss_pred             eeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEEeeccCCCCCCCCcccccccccccc
Q 042413          275 YLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISA  347 (350)
Q Consensus       275 ~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~  347 (350)
                      +|++++|.+...+. ++++++|+.|++++|.+..+|. ++++++|++|++++|.....+    .++++++|+.
T Consensus       155 ~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~----~l~~l~~L~~  221 (227)
T d1h6ua2         155 YLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS----PLANTSNLFI  221 (227)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG----GGTTCTTCCE
T ss_pred             cccccccccccchh-hcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCc----ccccCCCCCE
Confidence            99999988876654 7888999999999998888865 888899999999888655432    2444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6e-10  Score=88.81  Aligned_cols=86  Identities=14%  Similarity=0.101  Sum_probs=52.2

Q ss_pred             HhcCCceeeEEEccCCC-CCcCc-cccCCCCCCCeeeeeCCCCcccc-hhhhcCcCCCEEEccCCcCcccchhccccccC
Q 042413          243 FFKRFKYLRVLNLGSAV-LDQYP-SGLENLYLLKYLKLNIPSLKCLH-SLLCTLLNLETLEMPSSYIDQSPHDIWMMQKL  319 (350)
Q Consensus       243 ~~~~l~~L~~L~L~~~~-l~~lp-~~i~~l~~L~~L~l~~~~l~~lP-~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L  319 (350)
                      .+..+++|+.|++++++ ++.++ ..+.++++|+.|++++|+|+.++ ..+..+++|++|+|++|.++.+|.++....+|
T Consensus        26 ~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l  105 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL  105 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCC
T ss_pred             cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccc
Confidence            34555666666665543 66554 34566666666666666666663 33566666666666666666666655555566


Q ss_pred             cEEEeeccC
Q 042413          320 MHLYFYCIS  328 (350)
Q Consensus       320 ~~L~l~~~~  328 (350)
                      ++|++++|.
T Consensus       106 ~~L~L~~Np  114 (156)
T d2ifga3         106 QELVLSGNP  114 (156)
T ss_dssp             CEEECCSSC
T ss_pred             cccccCCCc
Confidence            666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=1.9e-09  Score=91.20  Aligned_cols=79  Identities=20%  Similarity=0.270  Sum_probs=43.9

Q ss_pred             hcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhccccccCcEEE
Q 042413          244 FKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQKLMHLY  323 (350)
Q Consensus       244 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~L~~L~  323 (350)
                      +..++.|+.|++++|.+...+. ++++++|+.|++++|+++.+|. ++.+++|++|++++|+++.+|. +.++++|+.|+
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~  223 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVT  223 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEE
T ss_pred             hccccccccccccccccccchh-hcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEE
Confidence            4445555666665555544332 5555566666666655555543 5555566666666655555553 55555666655


Q ss_pred             ee
Q 042413          324 FY  325 (350)
Q Consensus       324 l~  325 (350)
                      ++
T Consensus       224 ls  225 (227)
T d1h6ua2         224 LT  225 (227)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.94  E-value=1.4e-11  Score=102.66  Aligned_cols=92  Identities=18%  Similarity=0.162  Sum_probs=80.9

Q ss_pred             chHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEEccCCcCcccchhcccccc
Q 042413          239 DYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDIWMMQK  318 (350)
Q Consensus       239 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i~~L~~  318 (350)
                      ..+..+..+++|+.|+|++|.++.++ .+..+++|++|++++|.++.+|.....+.+|++|++++|.+..++ .+..+++
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~  116 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN  116 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccc
Confidence            45578899999999999999999886 588999999999999999999877777789999999999998885 5889999


Q ss_pred             CcEEEeeccCCCCC
Q 042413          319 LMHLYFYCISPCTS  332 (350)
Q Consensus       319 L~~L~l~~~~~~~~  332 (350)
                      |++|++++|.....
T Consensus       117 L~~L~L~~N~i~~~  130 (198)
T d1m9la_         117 LRVLYMSNNKITNW  130 (198)
T ss_dssp             SSEEEESEEECCCH
T ss_pred             ccccccccchhccc
Confidence            99999999866543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.5e-08  Score=79.07  Aligned_cols=84  Identities=15%  Similarity=-0.023  Sum_probs=73.3

Q ss_pred             eeEEEccCCCCCcCccccCCCCCCCeeeeeCC-CCcccch-hhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeec
Q 042413          250 LRVLNLGSAVLDQYPSGLENLYLLKYLKLNIP-SLKCLHS-LLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYC  326 (350)
Q Consensus       250 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~-~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~  326 (350)
                      ...++.+++.+.+.|..+..+++|+.|+++++ .++.+|. .+..+++|+.|++++|.+..+|. .|..+++|++|++++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            45688899999899999999999999999876 5998875 57889999999999999999965 688999999999999


Q ss_pred             cCCCCCC
Q 042413          327 ISPCTSK  333 (350)
Q Consensus       327 ~~~~~~~  333 (350)
                      |.....+
T Consensus        90 N~l~~l~   96 (156)
T d2ifga3          90 NALESLS   96 (156)
T ss_dssp             SCCSCCC
T ss_pred             CCCcccC
Confidence            9877653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=7.9e-08  Score=81.44  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=70.7

Q ss_pred             cchHHHhcCCceeeEEEccCCCCCcCcc--------------------------ccCCC-CCCCeeeeeCCCCcccchhh
Q 042413          238 KDYENFFKRFKYLRVLNLGSAVLDQYPS--------------------------GLENL-YLLKYLKLNIPSLKCLHSLL  290 (350)
Q Consensus       238 ~~~~~~~~~l~~L~~L~L~~~~l~~lp~--------------------------~i~~l-~~L~~L~l~~~~l~~lP~~i  290 (350)
                      ...+..|.++++|+.|++++|.+...+.                          .+..+ ..++.|++++|+++.++...
T Consensus        93 ~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~  172 (242)
T d1xwdc1          93 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA  172 (242)
T ss_dssp             EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTT
T ss_pred             ccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccc
Confidence            3444556677777777777766543321                          11122 24566777777788777777


Q ss_pred             hcCcCCCEEE-ccCCcCcccchh-ccccccCcEEEeeccCCCCCCCCccccccccccccc
Q 042413          291 CTLLNLETLE-MPSSYIDQSPHD-IWMMQKLMHLYFYCISPCTSKNYSSSLKNLIFISAL  348 (350)
Q Consensus       291 ~~l~~L~~L~-l~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L  348 (350)
                      ....+++.+. +.+|.++++|.. +..+++|++|++++|.....+.  ..+.+|++|+.+
T Consensus       173 ~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~l  230 (242)
T d1xwdc1         173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRAR  230 (242)
T ss_dssp             TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS--SSCTTCCEEESS
T ss_pred             ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH--HHHcCCcccccC
Confidence            6777776665 455589999874 6889999999999987765532  235555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.53  E-value=1.2e-07  Score=84.34  Aligned_cols=99  Identities=14%  Similarity=0.078  Sum_probs=57.4

Q ss_pred             eeEEEEecCcc-chhhccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeee
Q 042413          199 VKRCFILKDLI-DFFSSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLK  277 (350)
Q Consensus       199 ~r~L~l~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~  277 (350)
                      +++|.+..+.. .+|+  ..+  +|++|.+.++...    .+ |.   .+.+|+.|++++|.++.++.-   ...|++|+
T Consensus        40 l~~LdLs~~~L~~lp~--~~~--~L~~L~Ls~N~l~----~l-p~---~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~  104 (353)
T d1jl5a_          40 AHELELNNLGLSSLPE--LPP--HLESLVASCNSLT----EL-PE---LPQSLKSLLVDNNNLKALSDL---PPLLEYLG  104 (353)
T ss_dssp             CSEEECTTSCCSCCCS--CCT--TCSEEECCSSCCS----SC-CC---CCTTCCEEECCSSCCSCCCSC---CTTCCEEE
T ss_pred             CCEEEeCCCCCCCCCC--CCC--CCCEEECCCCCCc----cc-cc---chhhhhhhhhhhcccchhhhh---cccccccc
Confidence            45566655554 3332  123  6777777666552    12 11   234566667777766655431   13467777


Q ss_pred             eeCCCCcccchhhhcCcCCCEEEccCCcCcccchhc
Q 042413          278 LNIPSLKCLHSLLCTLLNLETLEMPSSYIDQSPHDI  313 (350)
Q Consensus       278 l~~~~l~~lP~~i~~l~~L~~L~l~~~~l~~lP~~i  313 (350)
                      +++|.+..+|. ++.+++|++|++++|.+...|..+
T Consensus       105 L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~  139 (353)
T d1jl5a_         105 VSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLP  139 (353)
T ss_dssp             CCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCC
T ss_pred             ccccccccccc-hhhhccceeecccccccccccccc
Confidence            77777777764 466777777777777666655543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=7.2e-08  Score=84.15  Aligned_cols=105  Identities=16%  Similarity=0.167  Sum_probs=46.3

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC-CC--cCccccCC-CCCCCeeeeeCC--CCc--ccchhhhc
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV-LD--QYPSGLEN-LYLLKYLKLNIP--SLK--CLHSLLCT  292 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~--~lp~~i~~-l~~L~~L~l~~~--~l~--~lP~~i~~  292 (350)
                      +|++|.+.++..-  ........+..+++|++|+++++. ++  .++..+.. .++|+.|+++++  .++  .++.-..+
T Consensus        96 ~L~~L~Ls~c~~i--td~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~  173 (284)
T d2astb2          96 NLVRLNLSGCSGF--SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  173 (284)
T ss_dssp             TCSEEECTTCBSC--CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCcCccccccccc--cccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccc
Confidence            5555555553220  111222333445556666665543 32  11111211 234555555543  122  22222344


Q ss_pred             CcCCCEEEccCC-cCc-ccchhccccccCcEEEeecc
Q 042413          293 LLNLETLEMPSS-YID-QSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       293 l~~L~~L~l~~~-~l~-~lP~~i~~L~~L~~L~l~~~  327 (350)
                      +++|++|++++| .++ ..+..+.++++|++|++++|
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCC
Confidence            555666666555 333 23344555556666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.39  E-value=2.6e-07  Score=82.09  Aligned_cols=98  Identities=17%  Similarity=0.027  Sum_probs=77.8

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCCcCccccCCCCCCCeeeeeCCCCcccchhhhcCcCCCEEE
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLDQYPSGLENLYLLKYLKLNIPSLKCLHSLLCTLLNLETLE  300 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~l~~lP~~i~~l~~L~~L~  300 (350)
                      +++.|.+.++...    .+ |+   ..++|++|+|++|.++++|..+   .+|+.|++++|+++.++.-   .++|++|+
T Consensus        39 ~l~~LdLs~~~L~----~l-p~---~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS----SL-PE---LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS----CC-CS---CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEE
T ss_pred             CCCEEEeCCCCCC----CC-CC---CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---cccccccc
Confidence            7889998888762    23 22   3568999999999999999765   4688889999988877642   24699999


Q ss_pred             ccCCcCcccchhccccccCcEEEeeccCCCCCC
Q 042413          301 MPSSYIDQSPHDIWMMQKLMHLYFYCISPCTSK  333 (350)
Q Consensus       301 l~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~  333 (350)
                      +++|.+..+|. ++.+++|++|+++++.....+
T Consensus       105 L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         105 VSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccccccccc-hhhhccceeeccccccccccc
Confidence            99999999995 788999999999887655443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.9e-07  Score=77.01  Aligned_cols=126  Identities=16%  Similarity=0.036  Sum_probs=85.6

Q ss_pred             CCCeeEEEEecCcc-chhhccCCC-CCCeeEEEEecCCCCCCCccchHHHhcCCc-eeeEEEccCCCCCcCccccCCCCC
Q 042413          196 LANVKRCFILKDLI-DFFSSLKHS-DMYLQSFLNHSSKNNHLNSKDYENFFKRFK-YLRVLNLGSAVLDQYPSGLENLYL  272 (350)
Q Consensus       196 ~~~~r~L~l~~~~~-~~~~~~~~~-~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~lp~~i~~l~~  272 (350)
                      ..+++++.+..+.. ..+...... +..+..+.......    .......|..++ .++.|++++|.++.++.......+
T Consensus       102 l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l----~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~  177 (242)
T d1xwdc1         102 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI----HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQ  177 (242)
T ss_dssp             CTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTC----CEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCC
T ss_pred             cccccccccchhhhccccccccccccccccccccccccc----ccccccccccccccceeeecccccccccccccccchh
Confidence            45778888887766 332222222 11343333333332    334445555554 788999999999988877777777


Q ss_pred             CCeee-eeCCCCcccchh-hhcCcCCCEEEccCCcCcccch-hccccccCcEEEee
Q 042413          273 LKYLK-LNIPSLKCLHSL-LCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFY  325 (350)
Q Consensus       273 L~~L~-l~~~~l~~lP~~-i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~  325 (350)
                      ++.+. +++|.++++|.. +..+++|++|++++|++..+|. .+.++++|+.+++.
T Consensus       178 l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             hhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            66654 567889999876 5889999999999999999987 46667777766664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.9e-07  Score=80.21  Aligned_cols=128  Identities=16%  Similarity=0.104  Sum_probs=90.2

Q ss_pred             CCCCeeEEEEecCcc--c-hhh-ccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCC-CC--cCcccc
Q 042413          195 SLANVKRCFILKDLI--D-FFS-SLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAV-LD--QYPSGL  267 (350)
Q Consensus       195 ~~~~~r~L~l~~~~~--~-~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~--~lp~~i  267 (350)
                      ...+++++.+..+..  + +.. ...++  +|+.|.+.++..    .......+..+++|+.|+++++. ++  .+..-.
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~--~L~~L~L~~~~l----~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~  117 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCS--KLQNLSLEGLRL----SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL  117 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBC--CCSEEECTTCBC----CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCC--CcccccccccCC----CcHHHHHHhcCCCCcCccccccccccccccchhh
Confidence            456789999887665  1 222 33566  999999998865    33445677889999999999964 66  233334


Q ss_pred             CCCCCCCeeeeeCCC-Cc--ccchhhhcC-cCCCEEEccCC--cCc--ccchhccccccCcEEEeeccC
Q 042413          268 ENLYLLKYLKLNIPS-LK--CLHSLLCTL-LNLETLEMPSS--YID--QSPHDIWMMQKLMHLYFYCIS  328 (350)
Q Consensus       268 ~~l~~L~~L~l~~~~-l~--~lP~~i~~l-~~L~~L~l~~~--~l~--~lP~~i~~L~~L~~L~l~~~~  328 (350)
                      ..+++|++|++++|. ++  .++..+... ++|+.|++++|  .+.  .++.-..++++|++|++++|.
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~  186 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  186 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             HHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc
Confidence            568899999999964 54  344445444 68999999987  333  244444568899999998864

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.4e-07  Score=73.72  Aligned_cols=85  Identities=22%  Similarity=0.076  Sum_probs=61.4

Q ss_pred             hHHHhcCCceeeEEEccCCCCCcCc---cccCCCCCCCeeeeeCCCCcccch-hhhcCcCCCEEEccCCcCcccch----
Q 042413          240 YENFFKRFKYLRVLNLGSAVLDQYP---SGLENLYLLKYLKLNIPSLKCLHS-LLCTLLNLETLEMPSSYIDQSPH----  311 (350)
Q Consensus       240 ~~~~~~~l~~L~~L~L~~~~l~~lp---~~i~~l~~L~~L~l~~~~l~~lP~-~i~~l~~L~~L~l~~~~l~~lP~----  311 (350)
                      ++..+..++.|++|+|++|.++.++   ..+..+++|++|++++|.|+.+++ ......+|+.|++++|.+.....    
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            3445567888999999999888653   445678899999999999888865 22334578889999886654322    


Q ss_pred             ----hccccccCcEEEe
Q 042413          312 ----DIWMMQKLMHLYF  324 (350)
Q Consensus       312 ----~i~~L~~L~~L~l  324 (350)
                          -+..+++|+.||-
T Consensus       137 y~~~i~~~~P~L~~LDg  153 (162)
T d1koha1         137 YISAIRERFPKLLRLDG  153 (162)
T ss_dssp             HHHHHHTTSTTCCEETT
T ss_pred             HHHHHHHHCCCCCEECc
Confidence                2556788888774

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6.5e-07  Score=82.16  Aligned_cols=60  Identities=18%  Similarity=0.166  Sum_probs=25.9

Q ss_pred             CeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCC
Q 042413          221 YLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSL  283 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l  283 (350)
                      +|++|.+.++...   ...+...++.++++++|+|++|.++     .++..+..+++|++|+|++|.|
T Consensus         3 ~l~~ld~~~~~i~---~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i   67 (460)
T d1z7xw1           3 DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL   67 (460)
T ss_dssp             EEEEEEEESCCCC---HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred             CCCEEEeeCCcCC---hHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcC
Confidence            3444444444441   2222333444444455555555443     2233334444455555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=8.4e-08  Score=76.46  Aligned_cols=67  Identities=24%  Similarity=0.149  Sum_probs=54.2

Q ss_pred             ccCCCCCCCeeeeeCCCCccc---chhhhcCcCCCEEEccCCcCcccch-hccccccCcEEEeeccCCCCC
Q 042413          266 GLENLYLLKYLKLNIPSLKCL---HSLLCTLLNLETLEMPSSYIDQSPH-DIWMMQKLMHLYFYCISPCTS  332 (350)
Q Consensus       266 ~i~~l~~L~~L~l~~~~l~~l---P~~i~~l~~L~~L~l~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~  332 (350)
                      ....+++|++|+|++|+|+.+   +..+..+++|+.|++++|.+..+++ ......+|+.|++++|..+..
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            335688999999999999866   4456889999999999999999886 333445799999999877654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.7e-06  Score=76.18  Aligned_cols=83  Identities=16%  Similarity=0.110  Sum_probs=63.9

Q ss_pred             ceeeEEEccCCCCC--cCccccCCCCCCCeeeeeCCCCc-----ccchhhhcCcCCCEEEccCCcCcc-----cchhccc
Q 042413          248 KYLRVLNLGSAVLD--QYPSGLENLYLLKYLKLNIPSLK-----CLHSLLCTLLNLETLEMPSSYIDQ-----SPHDIWM  315 (350)
Q Consensus       248 ~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~i~~l~~L~~L~l~~~~l~~-----lP~~i~~  315 (350)
                      .+|+.||++++.++  .+.+-+..+++++.|+|++|.++     .++..+..+++|++|||++|.++.     +...+..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46899999999998  33455667899999999999886     456667889999999999997753     2333332


Q ss_pred             -cccCcEEEeeccCCC
Q 042413          316 -MQKLMHLYFYCISPC  330 (350)
Q Consensus       316 -L~~L~~L~l~~~~~~  330 (350)
                       ..+|++|++++|...
T Consensus        82 ~~~~L~~L~L~~n~it   97 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLT   97 (460)
T ss_dssp             TTCCCCEEECTTSCCB
T ss_pred             CCCCCCEEECCCCCcc
Confidence             347999999988654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.63  E-value=4.6e-06  Score=74.18  Aligned_cols=110  Identities=17%  Similarity=0.071  Sum_probs=72.6

Q ss_pred             CeeEEEEecCCCCCC-CccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCcc-----cchh
Q 042413          221 YLQSFLNHSSKNNHL-NSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLKC-----LHSL  289 (350)
Q Consensus       221 ~Lr~L~~~~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~~-----lP~~  289 (350)
                      .++.|.+..+..... ........+..+++|+.|+|++|.+.     .+...+...++|++|++++|.+..     +-..
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~  266 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  266 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHH
Confidence            788888877765310 01112344667788888888888865     245566778888888888888763     2223


Q ss_pred             hhc--CcCCCEEEccCCcCcc-----cchhcc-ccccCcEEEeeccCCC
Q 042413          290 LCT--LLNLETLEMPSSYIDQ-----SPHDIW-MMQKLMHLYFYCISPC  330 (350)
Q Consensus       290 i~~--l~~L~~L~l~~~~l~~-----lP~~i~-~L~~L~~L~l~~~~~~  330 (350)
                      +..  ...|++|++++|.++.     +...+. ++++|++|++++|...
T Consensus       267 l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         267 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            333  3568888988886643     444453 5678888888887553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.56  E-value=3.1e-05  Score=68.58  Aligned_cols=132  Identities=14%  Similarity=0.125  Sum_probs=92.9

Q ss_pred             CCeeEEEEecCccch----------h------hccCCCCCCeeEEEEecCCCCCCCccchHHHhcCCceeeEEEccCCCC
Q 042413          197 ANVKRCFILKDLIDF----------F------SSLKHSDMYLQSFLNHSSKNNHLNSKDYENFFKRFKYLRVLNLGSAVL  260 (350)
Q Consensus       197 ~~~r~L~l~~~~~~~----------~------~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l  260 (350)
                      ..+++|.+..+....          .      .....+  .++.+.+..+.........+...+...+.|+.|+|++|.+
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~--~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i  198 (344)
T d2ca6a1         121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP--PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI  198 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             ccchheecccccccccccccccccccccccccccccCc--ccceeecccccccccccccccchhhhhhhhcccccccccc
Confidence            457788887665410          0      012345  8888888877664222233455677889999999999998


Q ss_pred             Cc------CccccCCCCCCCeeeeeCCCCc-----ccchhhhcCcCCCEEEccCCcCccc-----chhccc--cccCcEE
Q 042413          261 DQ------YPSGLENLYLLKYLKLNIPSLK-----CLHSLLCTLLNLETLEMPSSYIDQS-----PHDIWM--MQKLMHL  322 (350)
Q Consensus       261 ~~------lp~~i~~l~~L~~L~l~~~~l~-----~lP~~i~~l~~L~~L~l~~~~l~~l-----P~~i~~--L~~L~~L  322 (350)
                      ..      +...+..+++|+.|++++|.+.     .+...+...++|++|++++|.+..-     -..+..  ..+|++|
T Consensus       199 ~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L  278 (344)
T d2ca6a1         199 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL  278 (344)
T ss_dssp             CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred             cccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEE
Confidence            62      3345677899999999999874     3566778899999999999977542     223333  3579999


Q ss_pred             EeeccCCC
Q 042413          323 YFYCISPC  330 (350)
Q Consensus       323 ~l~~~~~~  330 (350)
                      ++++|...
T Consensus       279 ~ls~N~i~  286 (344)
T d2ca6a1         279 RLQYNEIE  286 (344)
T ss_dssp             ECCSSCCB
T ss_pred             ECCCCcCC
Confidence            99998643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.19  E-value=9e-05  Score=58.51  Aligned_cols=107  Identities=10%  Similarity=-0.024  Sum_probs=66.6

Q ss_pred             CeeEEEEecCC-CCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCcc-----cchh
Q 042413          221 YLQSFLNHSSK-NNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLKC-----LHSL  289 (350)
Q Consensus       221 ~Lr~L~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~~-----lP~~  289 (350)
                      .|+.|.+.++. ........+...+...+.|+.|+|++|.+.     .+...+...+.|+.|+|++|.+..     +-..
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~a   95 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS   95 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHH
Confidence            78888886532 311111123345667778888888888776     233445556778888888887752     3334


Q ss_pred             hhcCcCCCEEEccCCcCcc--------cchhccccccCcEEEeecc
Q 042413          290 LCTLLNLETLEMPSSYIDQ--------SPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       290 i~~l~~L~~L~l~~~~l~~--------lP~~i~~L~~L~~L~l~~~  327 (350)
                      +..-+.|+.|++++|....        +...+..-++|+.|+++.+
T Consensus        96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            5566778888888774433        3334555677888877543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.99  E-value=0.0004  Score=54.61  Aligned_cols=91  Identities=12%  Similarity=0.100  Sum_probs=68.5

Q ss_pred             hHHHhcCCceeeEEEccCC-CCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchhhhcCcCCCEEEccCCcCcc
Q 042413          240 YENFFKRFKYLRVLNLGSA-VLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSLLCTLLNLETLEMPSSYIDQ  308 (350)
Q Consensus       240 ~~~~~~~l~~L~~L~L~~~-~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~i~~l~~L~~L~l~~~~l~~  308 (350)
                      +.....+.+.|+.|+|+++ .+.     .+-..+...++|+.|+|++|.+.     .+...+...+.|+.|++++|.+..
T Consensus         7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_           7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            3445567799999999975 465     24456777889999999999875     344556677899999999997653


Q ss_pred             -----cchhccccccCcEEEeeccCCC
Q 042413          309 -----SPHDIWMMQKLMHLYFYCISPC  330 (350)
Q Consensus       309 -----lP~~i~~L~~L~~L~l~~~~~~  330 (350)
                           +-..+..-++|++|+++++...
T Consensus        87 ~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          87 ELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence                 3345677788999999887543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.67  E-value=0.00046  Score=54.08  Aligned_cols=107  Identities=12%  Similarity=0.058  Sum_probs=66.5

Q ss_pred             CeeEEEEecC-CCCCCCccchHHHhcCCceeeEEEccCCCCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchh
Q 042413          221 YLQSFLNHSS-KNNHLNSKDYENFFKRFKYLRVLNLGSAVLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSL  289 (350)
Q Consensus       221 ~Lr~L~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~  289 (350)
                      .|+.|.+.+. .........+...+...++|+.|+|++|.+.     .+-..+...+.++.+++++|.+.     .+-..
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~   97 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA   97 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHH
Confidence            7777777653 2311111223345567788888888888776     23344555677888888887664     34455


Q ss_pred             hhcCcCCCEEEccC--CcCc-----ccchhccccccCcEEEeecc
Q 042413          290 LCTLLNLETLEMPS--SYID-----QSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       290 i~~l~~L~~L~l~~--~~l~-----~lP~~i~~L~~L~~L~l~~~  327 (350)
                      +...++|+.++|..  |.++     .+...+.+.++|++|+++.+
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            66777888766653  3443     24455667778888887544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.88  E-value=0.0037  Score=48.56  Aligned_cols=89  Identities=15%  Similarity=0.116  Sum_probs=66.8

Q ss_pred             chHHHhcCCceeeEEEccCC-CCC-----cCccccCCCCCCCeeeeeCCCCc-----ccchhhhcCcCCCEEEccCCcCc
Q 042413          239 DYENFFKRFKYLRVLNLGSA-VLD-----QYPSGLENLYLLKYLKLNIPSLK-----CLHSLLCTLLNLETLEMPSSYID  307 (350)
Q Consensus       239 ~~~~~~~~l~~L~~L~L~~~-~l~-----~lp~~i~~l~~L~~L~l~~~~l~-----~lP~~i~~l~~L~~L~l~~~~l~  307 (350)
                      .+.....+.+.|+.|+|+++ .++     .+-..+...++|+.|++++|.+.     .+-..+....+++.+++++|.+.
T Consensus         8 ~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_           8 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            44556678899999999984 465     34556778899999999999875     23445667899999999998653


Q ss_pred             -----ccchhccccccCcEEEeecc
Q 042413          308 -----QSPHDIWMMQKLMHLYFYCI  327 (350)
Q Consensus       308 -----~lP~~i~~L~~L~~L~l~~~  327 (350)
                           .+-..+...++|+.++++.+
T Consensus        88 ~~g~~~l~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          88 GSGILALVEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCC
T ss_pred             chhHHHHHHHHHhCccccEEeeccC
Confidence                 34456778888998777543