Citrus Sinensis ID: 042446
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 445 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGP4 | 1010 | Probable LRR receptor-lik | yes | no | 0.982 | 0.432 | 0.448 | 2e-92 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.995 | 0.429 | 0.440 | 8e-88 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.876 | 0.380 | 0.447 | 7e-82 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.964 | 0.365 | 0.341 | 9e-59 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.822 | 0.320 | 0.373 | 3e-56 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.979 | 0.446 | 0.329 | 4e-55 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.930 | 0.369 | 0.339 | 2e-54 | |
| P93194 | 1109 | Receptor-like protein kin | N/A | no | 0.817 | 0.328 | 0.363 | 3e-54 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.849 | 0.302 | 0.361 | 4e-53 | |
| C0LGS2 | 1136 | Probable LRR receptor-lik | no | no | 0.979 | 0.383 | 0.327 | 4e-52 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function desciption |
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Score = 339 bits (870), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 197/439 (44%), Positives = 265/439 (60%), Gaps = 2/439 (0%)
Query: 8 LLHVAAF-EEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDL 66
LL F +E DR AL FKS ++ D + +L+SWN S C W GVTCGR+++RV L+L
Sbjct: 14 LLETHGFTDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLEL 73
Query: 67 MSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPAN 126
L G +SP IGNLSFL ++L +N G IP E G+L RLE L + N L G IP
Sbjct: 74 GRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLG 133
Query: 127 LSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSL 186
L CSRL L L N+L GS+P E L L L+L+ NN+ G + LGNLT LE ++L
Sbjct: 134 LYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLAL 193
Query: 187 SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSC 246
S+N+ EG IP + QL ++ SL + NN SG PP++ NLS L + N G L
Sbjct: 194 SHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPD 253
Query: 247 LGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLI 306
LG+ PNL F + N+FTGSIP +LSN S LE + + N+ +G FG + NL L
Sbjct: 254 LGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPNLKLLF 312
Query: 307 LQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQ 366
L +++LGS S ++ F+ SL NC++L L GRN+ G LP SI NLS++L L LG
Sbjct: 313 LHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTL 372
Query: 367 LYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNL 426
+ GSIP IGNL+NL L ++QN G +P +GKLLNL+ L N SG IP+ +GN+
Sbjct: 373 ISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNM 432
Query: 427 SSLSEIVLSNNNLSGVIPS 445
+ L + LSNN G++P+
Sbjct: 433 TMLETLDLSNNGFEGIVPT 451
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 196/445 (44%), Positives = 275/445 (61%), Gaps = 2/445 (0%)
Query: 2 LLFFITLLHVAAFE-EGDRAALQAFKSMIAHDPQR-ILNSWNDSRHFCEWDGVTCGRRHR 59
LL + + A F E D AL FKS ++ + +R +L SWN S FC W GVTCGRR
Sbjct: 14 LLLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRE 73
Query: 60 RVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSL 119
RVI+L+L L+G +SP IGNLSFLR +NL DN+ IP + GRLFRL+ L ++ N L
Sbjct: 74 RVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLL 133
Query: 120 VGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLT 179
G+IP++LS CSRL+ + L N L +P E L KL L L KNNLTG LGNLT
Sbjct: 134 EGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLT 193
Query: 180 FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQI 239
L+ + +YN G IPD + +L ++ I +N+ SG PP++ N+S L + S++ N
Sbjct: 194 SLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSF 253
Query: 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGM 299
G+L + G PNL+ + N FTG+IP +L+N S LE I++N SG ++FG +
Sbjct: 254 SGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKL 313
Query: 300 KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQV 359
+NL L +++++LG+ S + FI ++ANC++L L G N+ G LP SI NLS+ L
Sbjct: 314 RNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTS 373
Query: 360 LFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKI 419
LFLG N + G+IP IGNLV+L L++E N G +P GKLLNLQ +D N SG+I
Sbjct: 374 LFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEI 433
Query: 420 PSTLGNLSSLSEIVLSNNNLSGVIP 444
PS GN++ L ++ L++N+ G IP
Sbjct: 434 PSYFGNMTRLQKLHLNSNSFHGRIP 458
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
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Score = 304 bits (779), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 193/431 (44%), Positives = 262/431 (60%)
Query: 15 EEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGS 74
EE D+ AL FKS ++ + +L SWNDS C W GV CG +HRRV +DL L+G
Sbjct: 37 EETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGV 96
Query: 75 LSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLT 134
+SP +GNLSFLR +NL DN G IP E G LFRL+ L ++NN G IP LS CS L+
Sbjct: 97 VSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLS 156
Query: 135 VLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGN 194
L L N L +P EF L KL LSL +NNLTG LGNLT L+++ YN EG
Sbjct: 157 TLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGE 216
Query: 195 IPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNL 254
IP + +LK++ I +N +G PP I NLS L+ S++ N G+L G PNL
Sbjct: 217 IPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNL 276
Query: 255 KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGS 314
+ + N FTG+IP +LSN S L + I +N +GK ++FG ++NL L L +++LG+
Sbjct: 277 QILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGN 336
Query: 315 GESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSG 374
S ++ F+ +L NCS+L+ L+ G N+ G LP I NLS+QL L LG N + GSIP G
Sbjct: 337 YSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHG 396
Query: 375 IGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVL 434
IGNLV+L L + +N G +P +G+L L+ + N SG+IPS+LGN+S L+ + L
Sbjct: 397 IGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYL 456
Query: 435 SNNNLSGVIPS 445
NN+ G IPS
Sbjct: 457 LNNSFEGSIPS 467
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
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Score = 228 bits (580), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 236/466 (50%), Gaps = 37/466 (7%)
Query: 4 FFITLLHVAAFEEGDRAALQAFKSMIAHDPQRILNSWN--DSRHFCEWDGVTCGRRHRRV 61
FF L +FE + AL++FK+ I++DP +L+ W S C W G+TC V
Sbjct: 17 FFGIALAKQSFEP-EIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGH-V 74
Query: 62 IALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVG 121
+++ L+ K L G LSP I NL++L+ ++L N+ G+IP E G+L L L L N G
Sbjct: 75 VSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSG 134
Query: 122 KIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL 181
IP+ + + L L N L G +P E L + NNLTG I LG+L L
Sbjct: 135 SIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHL 194
Query: 182 ELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG 241
++ + N G+IP S+G L L L + N L+GKIP NL L + +++N + G
Sbjct: 195 QMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEG 254
Query: 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKN 301
+P+ +G N +L ++ N TG IP L N +L+ ++I N + + +
Sbjct: 255 DIPAEIG-NCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQ 313
Query: 302 LSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLF 361
L+HL L ++L S+E+GF+ S L VL+ N F G P SITNL + L VL
Sbjct: 314 LTHLGLSENHLVGPISEEIGFLES------LEVLTLHSNNFTGEFPQSITNLRN-LTVLT 366
Query: 362 LGFNQ------------------------LYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQ 397
+GFN L G IPS I N L LL + NQ G IP+
Sbjct: 367 VGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPR 426
Query: 398 EMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVI 443
G+ +NL + G NHF+G+IP + N S+L + +++NNL+G +
Sbjct: 427 GFGR-MNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTL 471
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 142/380 (37%), Positives = 211/380 (55%), Gaps = 14/380 (3%)
Query: 69 KALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLS 128
K +SG + IG+ S L + L + ++ G +P G+L +LE L + + G+IP++L
Sbjct: 212 KEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLG 271
Query: 129 YCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSY 188
CS L L L +N L GSIP E L KL+ L L +N+L GGI +GN + L+++ LS
Sbjct: 272 NCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSL 331
Query: 189 NSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLG 248
N G+IP S+G+L L+ I N SG IP +I N S LV + +NQI G +PS LG
Sbjct: 332 NLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELG 391
Query: 249 LNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQ 308
L F N GSIP L++ + L+ + ++ NS +G ++NL+ L+L
Sbjct: 392 -TLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLI 450
Query: 309 SSNLGSGESDEMGFI-NSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGF--N 365
S++L GFI + NCS L L G N+ G +P I +L ++ FL F N
Sbjct: 451 SNSLS-------GFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLK---KINFLDFSSN 500
Query: 366 QLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGN 425
+L+G +P IG+ L ++ + N G++P + L LQ LD N FSGKIP++LG
Sbjct: 501 RLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGR 560
Query: 426 LSSLSEIVLSNNNLSGVIPS 445
L SL++++LS N SG IP+
Sbjct: 561 LVSLNKLILSKNLFSGSIPT 580
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 160/486 (32%), Positives = 229/486 (47%), Gaps = 50/486 (10%)
Query: 3 LFFITLLHVAAFEEGDRAALQAFKSMIAHDPQRILNSWNDS--RHFCEWDGVTCGRRHRR 60
LF ++L+ EEG A L K D +L W S +C W GV+C
Sbjct: 13 LFCLSLVATVTSEEG--ATLLEIKKSFK-DVNNVLYDWTTSPSSDYCVWRGVSCENVTFN 69
Query: 61 VIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFG---------------- 104
V+AL+L L G +SP IG+L L I+L N + G+IP E G
Sbjct: 70 VVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELS 129
Query: 105 --------RLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYK 156
+L +LE L L NN L+G IP+ LS L +L L QNKL G IP +
Sbjct: 130 GDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIYWNEV 189
Query: 157 LKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216
L+ L L NNL G ISP L LT L + NS G+IP+++G + L + N L+
Sbjct: 190 LQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLT 249
Query: 217 GKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNAS 276
G+IP I L + S+ NQ+ G +PS +GL L + N +GSIP L N +
Sbjct: 250 GEIPFDIGFLQ-VATLSLQGNQLSGKIPSVIGL-MQALAVLDLSGNLLSGSIPPILGNLT 307
Query: 277 KLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFI------------- 323
E + + +N +G G M L +L L ++L E+G +
Sbjct: 308 FTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDL 367
Query: 324 -----NSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378
+ L++C+ L L+ N+F G +P + L S + L L N + G IP + +
Sbjct: 368 EGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLES-MTYLNLSSNNIKGPIPVELSRI 426
Query: 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNN 438
NL L + N+ G IP +G L +L ++ NH +G +P GNL S+ EI LSNN+
Sbjct: 427 GNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNND 486
Query: 439 LSGVIP 444
+SG IP
Sbjct: 487 ISGPIP 492
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Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 154/454 (33%), Positives = 220/454 (48%), Gaps = 40/454 (8%)
Query: 21 ALQAFKSMIAHDPQRILNSW------NDSRHFCEWDGVTCGRRHR--------------- 59
AL +KS + + L+SW N S W GV+C R
Sbjct: 36 ALLKWKSTFTNSSK--LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGIEGTF 93
Query: 60 ---------RVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLE 110
+ +DL LSG++ P GNLS L +L N + GEI P G L L
Sbjct: 94 QDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLT 153
Query: 111 ALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGG 170
L+L N L IP+ L +T L+L QNKL GSIP L L L L++N LTG
Sbjct: 154 VLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGV 213
Query: 171 ISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLV 230
I P LGN+ + ++LS N G+IP +LG LK L L + N L+G IPP I N+ +
Sbjct: 214 IPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMT 273
Query: 231 NFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSG 290
N ++SQN++ GS+PS LG N NL + QN+ TG IP L N + ++++NN +G
Sbjct: 274 NLALSQNKLTGSIPSSLG-NLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTG 332
Query: 291 KFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSI 350
+ G +KNL+ L L + L E+G + S+ + L N+ G +P S
Sbjct: 333 SIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMID------LQLNNNKLTGSIPSSF 386
Query: 351 TNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDF 410
NL + + L G IP +GN+ ++ L + QN+ G++P G L+ L
Sbjct: 387 GNLKNLTYLYLYLN-YLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYL 445
Query: 411 GGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
NH SG IP + N S L+ ++L NN +G P
Sbjct: 446 RVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFP 479
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 137/377 (36%), Positives = 205/377 (54%), Gaps = 13/377 (3%)
Query: 70 ALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSY 129
L+GS+ +IGN+S L + L DN G +P G + L+ L+L +N+LVG +P L+
Sbjct: 175 GLNGSIPSNIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNN 234
Query: 130 CSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYN 189
L L + N LVG+IP +FV ++ +SL N TGG+ P LGN T L
Sbjct: 235 LENLVYLDVRNNSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSC 294
Query: 190 SFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGL 249
+ G IP GQL +L +L + N+ SG+IPP + +++ + QNQ+ G +P LG+
Sbjct: 295 ALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGM 354
Query: 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQS 309
L++ + N +G +P+S+ L+ +Q+ N+ SG+ V+ +K L L L
Sbjct: 355 -LSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYE 413
Query: 310 SNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQ--LQVLFLGFNQL 367
++ ++G AN S L VL RN F G +P NL SQ L+ L LG+N L
Sbjct: 414 NHFTGVIPQDLG-----AN-SSLEVLDLTRNMFTGHIP---PNLCSQKKLKRLLLGYNYL 464
Query: 368 YGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLS 427
GS+PS +G L L +E+N G +P + K NL D GN+F+G IP +LGNL
Sbjct: 465 EGSVPSDLGGCSTLERLILEENNLRGGLPDFVEK-QNLLFFDLSGNNFTGPIPPSLGNLK 523
Query: 428 SLSEIVLSNNNLSGVIP 444
+++ I LS+N LSG IP
Sbjct: 524 NVTAIYLSSNQLSGSIP 540
|
Possible role in short-day photoperiod floral induction. Ipomoea nil (taxid: 35883) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (532), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 207/385 (53%), Gaps = 7/385 (1%)
Query: 61 VIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLV 120
+ +L + L G + +GNL L+ + L + G IP + GRL R+++L L +N L
Sbjct: 145 IRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLE 204
Query: 121 GKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTF 180
G IPA L CS LTV + +N L G+IP E L L+ L+L N+LTG I LG ++
Sbjct: 205 GPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQ 264
Query: 181 LELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240
L+ +SL N +G IP SL L L++L + NNL+G+IP N+S L++ ++ N +
Sbjct: 265 LQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLS 324
Query: 241 GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMK 300
GSLP + N NL+ + +G IPV LS L+ + ++NNS +G +
Sbjct: 325 GSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELV 384
Query: 301 NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL 360
L+ L L ++ L E S++N + L+ L N G LP I+ L +L+VL
Sbjct: 385 ELTDLYLHNNTL------EGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISAL-RKLEVL 437
Query: 361 FLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP 420
FL N+ G IP IGN +L ++ M N F G IP +G+L L L N G +P
Sbjct: 438 FLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLP 497
Query: 421 STLGNLSSLSEIVLSNNNLSGVIPS 445
++LGN L+ + L++N LSG IPS
Sbjct: 498 ASLGNCHQLNILDLADNQLSGSIPS 522
|
Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (523), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 168/513 (32%), Positives = 244/513 (47%), Gaps = 77/513 (15%)
Query: 2 LLFFITLLHVAAFEEGDRAALQAFKSMIAHDPQRILNSWNDSRHF--CEWDGVTCGRRHR 59
L+ + L+ A + + AL AFK + HDP L SW+ S C+W GV C +
Sbjct: 12 LVIYAPLVSYADESQAEIDALTAFK-LNLHDPLGALTSWDPSTPAAPCDWRGVGC--TNH 68
Query: 60 RVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSL 119
RV + L LSG +S I L LR+++L N+ G IP RL ++FL NSL
Sbjct: 69 RVTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSL 128
Query: 120 VGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLT 179
GK+P + + L V ++ N+L G IP L+ L + N +G I L NLT
Sbjct: 129 SGKLPPAMRNLTSLEVFNVAGNRLSGEIPVGLP--SSLQFLDISSNTFSGQIPSGLANLT 186
Query: 180 FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQI 239
L+L++LSYN G IP SLG L+ L+ L + N L G +P +I N S LV+ S S+N+I
Sbjct: 187 QLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEI 246
Query: 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQ----------------- 282
G +P+ G P L+ + N F+G++P SL + L ++Q
Sbjct: 247 GGVIPAAYGA-LPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTAN 305
Query: 283 ---------------------------------IANNSFSGKFSVNFGGMKNLSHLILQS 309
++ N FSG+ + G +K L L L +
Sbjct: 306 CRTGLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLAN 365
Query: 310 SNLG---------SGESDEMGFINS---------LANCSKLRVLSFGRNQFRGVLPHSIT 351
++L G D + F + L L+VLS GRN F G +P S+
Sbjct: 366 NSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMV 425
Query: 352 NLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFG 411
NL QL+ L LG N L GS P + L +L L + N+F G +P + L NL L+
Sbjct: 426 NL-QQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLS 484
Query: 412 GNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
GN FSG+IP+++GNL L+ + LS N+SG +P
Sbjct: 485 GNGFSGEIPASVGNLFKLTALDLSKQNMSGEVP 517
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 445 | ||||||
| 224115346 | 1017 | predicted protein [Populus trichocarpa] | 0.874 | 0.382 | 0.551 | 1e-119 | |
| 224090977 | 1034 | predicted protein [Populus trichocarpa] | 0.991 | 0.426 | 0.501 | 1e-108 | |
| 224097750 | 1023 | predicted protein [Populus trichocarpa] | 0.961 | 0.418 | 0.502 | 1e-108 | |
| 255576770 | 851 | serine-threonine protein kinase, plant-t | 0.986 | 0.515 | 0.506 | 1e-107 | |
| 359482058 | 1040 | PREDICTED: probable LRR receptor-like se | 0.878 | 0.375 | 0.518 | 1e-107 | |
| 147853780 | 1904 | hypothetical protein VITISV_030954 [Viti | 0.919 | 0.214 | 0.516 | 1e-107 | |
| 224097748 | 1032 | predicted protein [Populus trichocarpa] | 0.964 | 0.415 | 0.513 | 1e-106 | |
| 224097752 | 1025 | predicted protein [Populus trichocarpa] | 0.964 | 0.418 | 0.497 | 1e-106 | |
| 255577438 | 1028 | receptor-kinase, putative [Ricinus commu | 0.964 | 0.417 | 0.486 | 1e-106 | |
| 147810637 | 1009 | hypothetical protein VITISV_020143 [Viti | 0.964 | 0.425 | 0.515 | 1e-106 |
| >gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 236/428 (55%), Positives = 298/428 (69%)
Query: 18 DRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSP 77
DR AL FKS I HDPQ I SWNDS HFC+W GV CGRRH RV L L S L GS+SP
Sbjct: 39 DRLALLDFKSKIIHDPQNIFGSWNDSLHFCQWQGVRCGRRHERVTVLKLESSGLVGSISP 98
Query: 78 HIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLS 137
+GNLSFL ++L +NT+QG+IP GRLFRL+ L L NNS VG+IP NLS+CS+L L
Sbjct: 99 ALGNLSFLWGLDLSNNTLQGKIPDGLGRLFRLQILVLNNNSFVGEIPGNLSHCSKLDYLG 158
Query: 138 LGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPD 197
L N LVG IP E V L KL+ L +HKNNL+G I PF+GNLT L +S + N+F+G IPD
Sbjct: 159 LASNNLVGKIPAELVSLSKLEKLVIHKNNLSGAIPPFIGNLTSLNSISAAANNFQGRIPD 218
Query: 198 SLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFF 257
+LGQLK L+SL +G N LSG IP I NLS L S+S+NQ+ G LPS +G++ PNL++
Sbjct: 219 TLGQLKNLESLGLGTNFLSGTIPLPIYNLSTLSILSLSENQLQGYLPSDIGVSLPNLQYI 278
Query: 258 QIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGES 317
QI N F+GSIP+S+SN+S L+V++ +NSFSGK SVNFGG+K+L+ + L + +GSGE
Sbjct: 279 QIRANQFSGSIPLSISNSSNLQVLEAGDNSFSGKLSVNFGGLKHLAVVSLSFNKMGSGEP 338
Query: 318 DEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGN 377
E+ F++SL NC+ L + N F G+LP+S+ NLS+ L L LG NQL+G I SGIGN
Sbjct: 339 GELSFLDSLINCTSLYAIDIVGNHFEGMLPNSLGNLSTGLTFLGLGQNQLFGGIHSGIGN 398
Query: 378 LVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437
L+NL L +E NQ G IP ++GKL LQ N SG IPS++GNL+ L E L N
Sbjct: 399 LINLNTLGLEFNQLSGPIPLDIGKLRMLQRFSLSYNRLSGHIPSSIGNLTLLLEFDLQGN 458
Query: 438 NLSGVIPS 445
L G IPS
Sbjct: 459 QLQGTIPS 466
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090977|ref|XP_002309132.1| predicted protein [Populus trichocarpa] gi|222855108|gb|EEE92655.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 226/451 (50%), Positives = 295/451 (65%), Gaps = 10/451 (2%)
Query: 4 FFITLLHVAAFE---------EGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTC 54
F + LH +F E D AL A K+ I DP +++SWNDS HFC W G+ C
Sbjct: 15 FVVIFLHAPSFTQAATTLSGNETDHLALLAIKAQIKLDPLGLMSSWNDSLHFCNWGGIIC 74
Query: 55 GRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFL 114
G H+RVI L+L L GSLSP IGN+SFLR I+L N GEIP E GRL RL+ +
Sbjct: 75 GNLHQRVITLNLSHYGLVGSLSPQIGNMSFLRGISLEQNYFHGEIPQEIGRLDRLKYINF 134
Query: 115 ANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPF 174
+NNS G+IPANLS CS L +L LG NKL G IP++ L KL+ + LH NNL G +
Sbjct: 135 SNNSFSGEIPANLSGCSSLLMLRLGFNKLTGQIPYQLGSLQKLERVQLHYNNLNGSVPDS 194
Query: 175 LGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSV 234
LGN++ + +SLS N+FEG+IPD+LG+LK L L +G+NNLSG IPP+I NLS L+ F++
Sbjct: 195 LGNISSVRSLSLSVNNFEGSIPDALGRLKTLNFLGLGLNNLSGMIPPTIFNLSSLIVFTL 254
Query: 235 SQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSV 294
NQ+HG+LPS LGL PNL+ I NFF+G +PVS+SNAS L + I ++F+ K ++
Sbjct: 255 PYNQLHGTLPSDLGLTLPNLQVLNIGHNFFSGPLPVSISNASNLLELDIDTSNFT-KVTI 313
Query: 295 NFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLS 354
+FGG+ NL L L S+ LG GE+D++ FI+SL C LR+L + F GV+P SI NLS
Sbjct: 314 DFGGLPNLWSLALSSNPLGKGEADDLSFIDSLTKCRNLRLLDLSNSHFGGVIPDSIGNLS 373
Query: 355 SQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNH 414
+QL +L L NQL GSIP+ I NL+NL L +E+N G+IP +G L LQ LD N
Sbjct: 374 TQLFLLKLRGNQLSGSIPTVIENLLNLAELTVEKNYLSGSIPSVLGNLKMLQRLDLSENK 433
Query: 415 FSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
SG IPS+LGN++ L E L N + G IPS
Sbjct: 434 LSGLIPSSLGNITQLFEFHLQKNQIMGSIPS 464
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097750|ref|XP_002311066.1| predicted protein [Populus trichocarpa] gi|222850886|gb|EEE88433.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/430 (50%), Positives = 281/430 (65%), Gaps = 2/430 (0%)
Query: 16 EGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSL 75
E DR +L AFK+ I+ DP L+SWN+S HFCEW GV CGR+HRRV+ LDL S L+GSL
Sbjct: 32 ETDRLSLLAFKTQIS-DPLGKLSSWNESLHFCEWSGVICGRKHRRVVELDLHSSQLAGSL 90
Query: 76 SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTV 135
SPHIGNLSFLR +NL N+ IP E GRLFR++ L L NN+ G+IP N+S C+ L
Sbjct: 91 SPHIGNLSFLRILNLEKNSFSYLIPQELGRLFRIQELSLGNNTFSGEIPVNISRCTNLLS 150
Query: 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195
+ L N L G +P EF L KL+ L+ +N+L G I P GNL+ L+++ N+ +G I
Sbjct: 151 IGLASNNLTGKLPAEFGSLSKLQVLNFQRNHLFGEIPPSYGNLSELQIIRGVRNNLQGGI 210
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255
PDS+GQLK L GVN+LSG IP SI N+S LV FS NQ++G LP LGL PNL
Sbjct: 211 PDSIGQLKRLADFTFGVNSLSGTIPSSIYNMSSLVRFSAPLNQLYGILPPELGLTLPNLD 270
Query: 256 FFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSG 315
F I N F G IP +LSNASK+ +Q+ NNSF+GK + G+ NL L+L +NLG+
Sbjct: 271 TFNILSNQFRGLIPSTLSNASKISDLQLRNNSFTGKVP-SLAGLHNLQRLVLNFNNLGNN 329
Query: 316 ESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI 375
E D++GF+ LAN + L +L+ N F GVLP + N S++L+++ +G N L GSIP+ I
Sbjct: 330 EDDDLGFLYPLANTTSLEILAINHNNFGGVLPEIVCNFSTKLRIMIIGENNLRGSIPTEI 389
Query: 376 GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLS 435
G L+ L L +E NQ G IP +GKL L + GN SG IPS+LGN++SL E+
Sbjct: 390 GKLIGLDTLGLELNQLTGIIPSSIGKLQRLGVFNINGNKISGNIPSSLGNITSLLEVYFF 449
Query: 436 NNNLSGVIPS 445
NNL G IPS
Sbjct: 450 ANNLQGRIPS 459
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255576770|ref|XP_002529272.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531261|gb|EEF33104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 224/442 (50%), Positives = 294/442 (66%), Gaps = 3/442 (0%)
Query: 7 TLLHVAAFE--EGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIAL 64
TL AA + + D +L FK+ I HDPQ L SWNDS HFC WDGV C +HRRV L
Sbjct: 27 TLCTAAAADGNKTDHLSLLDFKAKIRHDPQYSLKSWNDSVHFCNWDGVICSSKHRRVTVL 86
Query: 65 DLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIP 124
DL SK L GSLSPH+GNLSFLR++ L +NT+QGEIP E G LFRL+ L L NNS G+IP
Sbjct: 87 DLQSKGLVGSLSPHVGNLSFLRQLILQNNTLQGEIPQEIGHLFRLQVLRLENNSFEGEIP 146
Query: 125 ANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELV 184
+NLS+CS L L LG NKLVG IP E L L LS+ N +GGI P LGNL+ LE+
Sbjct: 147 SNLSHCSNLFFLRLGYNKLVGKIPVELSTLSNLIRLSIIGNYFSGGIPPSLGNLSSLEVF 206
Query: 185 SLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLP 244
+ N +G IP+S G+LK L + + N LSG P SI NLS ++ VS N +HGS+P
Sbjct: 207 AADGNLLDGTIPESFGKLKYLAYIGLHGNKLSGTFPASIYNLSSIIFLLVSDNLLHGSIP 266
Query: 245 SCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGK-FSVNFGGMKNLS 303
S +GL P+L+ ++ N F+GSIPVSLSNAS+L + + N+F+GK S +FGG+++LS
Sbjct: 267 SNIGLQLPHLQELEMWGNHFSGSIPVSLSNASELVYVDLGTNNFTGKVLSAHFGGLRHLS 326
Query: 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLG 363
HL L ++LGS + D++ FI SL N + L NQ G P+S+ NLSS LQ L LG
Sbjct: 327 HLALYQNSLGSNKDDDLDFITSLLNSTSFVFLDLSTNQLEGAFPNSVANLSSPLQWLSLG 386
Query: 364 FNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTL 423
N+++G +PS + LV+L L+++ NQ G+IP +MGKL NL + F N +G IPS++
Sbjct: 387 QNRIHGRLPSWLSGLVSLSRLSIQFNQITGSIPSDMGKLQNLYSMFFDHNRLTGIIPSSI 446
Query: 424 GNLSSLSEIVLSNNNLSGVIPS 445
GNLS L+ + L++NNL G IPS
Sbjct: 447 GNLSFLNLLHLNDNNLHGTIPS 468
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 223/430 (51%), Positives = 277/430 (64%)
Query: 16 EGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSL 75
E DR AL A K+ I DP I SWNDS HFC W GVTCG RH+RV L+L S L GSL
Sbjct: 38 ETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHLVGSL 97
Query: 76 SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTV 135
SP IGNL+FL +NL N G+IP E GRL RL AL L NNS G+IPANLS CS L
Sbjct: 98 SPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVY 157
Query: 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195
LG N L+G IP K+ + LH NNLTG + LGNLT ++ +S + N EG+I
Sbjct: 158 FRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSI 217
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255
P +LGQL+ L+ + +G+N SG IP S+ N+S L FS+ N+++GSLP L PNL+
Sbjct: 218 PQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQ 277
Query: 256 FFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSG 315
I N FTGS+P SLSNAS L I ++F+GK S++FGGM NL L L S+ LG G
Sbjct: 278 VLNIGNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKG 337
Query: 316 ESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI 375
E+D++ F+NSL C L+VL +QF GVLP+SI NLS+QL L L NQL G+IP GI
Sbjct: 338 EADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGI 397
Query: 376 GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLS 435
GNLVNL L + N F G+IP +G L L +D N SG IPS+LGN++ L + L
Sbjct: 398 GNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQ 457
Query: 436 NNNLSGVIPS 445
NN+LSG IPS
Sbjct: 458 NNHLSGKIPS 467
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 222/430 (51%), Positives = 276/430 (64%)
Query: 16 EGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSL 75
E DR AL A K+ I DP I SWNDS HFC W GVTCG RH+RV L+L S L GSL
Sbjct: 69 ETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLSSLHLVGSL 128
Query: 76 SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTV 135
SP IGNL+FL +NL N G+IP E GRL RL AL L NNS G+IPANLS CS L
Sbjct: 129 SPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVY 188
Query: 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195
LG N L+G IP K+ + LH NNLTG + LGNLT ++ +S + N EG+I
Sbjct: 189 FRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSI 248
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255
P +LGQL+ L+ + +G+N SG IP S+ N+S L FS+ N+++GSLP L PNL+
Sbjct: 249 PQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQ 308
Query: 256 FFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSG 315
I N FTG +P SLSNAS L I ++F+GK S++FGGM NL L L S+ LG G
Sbjct: 309 VLNIGNNDFTGPLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKG 368
Query: 316 ESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI 375
E+D++ F+NSL C L+VL +QF GVLP+SI NLS+QL L L NQL G+IP GI
Sbjct: 369 EADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGI 428
Query: 376 GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLS 435
GNLVNL L + N F G+IP +G L L +D N SG IPS+LGN++ L + L
Sbjct: 429 GNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQ 488
Query: 436 NNNLSGVIPS 445
NN+LSG IPS
Sbjct: 489 NNHLSGKIPS 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097748|ref|XP_002311065.1| predicted protein [Populus trichocarpa] gi|222850885|gb|EEE88432.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 221/430 (51%), Positives = 277/430 (64%), Gaps = 1/430 (0%)
Query: 16 EGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSL 75
E DR +L AFK I DP L+SWNDS HFCEW GVTCGRRH+RV+ LDL S L GSL
Sbjct: 32 ETDRLSLLAFKDQIEADPLGTLSSWNDSSHFCEWSGVTCGRRHQRVVELDLNSCKLVGSL 91
Query: 76 SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTV 135
SPHIGNLSFLR +NL +N+ IP E GRLFRL+ L L NN+ G+IP N+S CS L
Sbjct: 92 SPHIGNLSFLRILNLNNNSFSHTIPQEIGRLFRLQKLLLRNNTFTGEIPVNISRCSNLLH 151
Query: 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195
L LG N+L G +P E L K++ NNL G I GNL+ +E + N+ G I
Sbjct: 152 LYLGGNELTGGLPGELGSLSKMQWFVFEINNLVGEIPISFGNLSSVEAIFGGANNLRGGI 211
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255
P + GQLK LK+L +NNLSG IPPSI NLS L S+S NQ+HGSLPS LGL PNL+
Sbjct: 212 PKNFGQLKRLKNLVFNINNLSGTIPPSIYNLSSLTTLSLSSNQLHGSLPSDLGLTLPNLE 271
Query: 256 FFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSG 315
+ N F+G IP SL NAS + VI +++N F+GK + G M L L++Q+++LG+
Sbjct: 272 TLGLHTNHFSGLIPASLFNASNITVIDLSSNKFTGKVP-DLGHMPKLRRLVIQTNDLGNN 330
Query: 316 ESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI 375
E D++GF+ LAN + L+VL N G LP I+N S +L + G NQ+ G IP+ I
Sbjct: 331 EDDDLGFLYPLANNTNLQVLGINDNNLGGALPEKISNFSIKLIHMTFGRNQIRGIIPTDI 390
Query: 376 GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLS 435
GNLVNL L +E NQ GTIP +GKL NL+ L N SG IPS+LGN +SL + L
Sbjct: 391 GNLVNLQTLGLEMNQLTGTIPSSIGKLRNLRVLSLRSNKISGSIPSSLGNCTSLINLELH 450
Query: 436 NNNLSGVIPS 445
NNL+G IPS
Sbjct: 451 ANNLNGSIPS 460
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097752|ref|XP_002311067.1| predicted protein [Populus trichocarpa] gi|222850887|gb|EEE88434.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 214/430 (49%), Positives = 278/430 (64%), Gaps = 1/430 (0%)
Query: 16 EGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSL 75
E DR +L A KS I +DP +L+SWN+S HFC+W GV CG+RHRRV+ +DL S L GSL
Sbjct: 33 ETDRLSLLALKSQITNDPFGMLSSWNESLHFCDWSGVICGKRHRRVVEIDLHSAQLVGSL 92
Query: 76 SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTV 135
SPHIGNLSFLR + L +N IP E G LFRL L L NN+ GKIP N+S+CS L +
Sbjct: 93 SPHIGNLSFLRILKLENNRFSHNIPQELGHLFRLRMLSLENNTFDGKIPVNISHCSNLLI 152
Query: 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195
LSL N L G +P E L KL+ N L GGI GNL+ + + + N +G I
Sbjct: 153 LSLSGNNLTGKLPIELGSLSKLQVFFFQFNYLVGGIPSSFGNLSAIIQIFGAGNYLQGGI 212
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255
P+S+GQLK LKS + G NN++G IPPSI NLS L+ F+V NQ+HG+LP LGL PNL+
Sbjct: 213 PNSIGQLKSLKSFSFGRNNMTGMIPPSIYNLSSLMRFAVPVNQLHGNLPPDLGLTLPNLE 272
Query: 256 FFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSG 315
+ N F+GSIP + SNAS + VI+++NN+ +G+ + + L LI+ + LG+G
Sbjct: 273 ILLMSFNRFSGSIPPTFSNASTIAVIELSNNNLTGRVP-DLSSLSKLRWLIVDVNYLGNG 331
Query: 316 ESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI 375
D++ F+ LAN + L LS N F G+LP I+N S L+ + G NQ+ GSIPSGI
Sbjct: 332 NDDDLSFLPPLANKTSLEELSINDNNFGGLLPKIISNFSENLKRMTFGRNQIRGSIPSGI 391
Query: 376 GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLS 435
GNL+ L L +E NQ G IP +GKL NL L GGN SG IPS++GN++SL E+ LS
Sbjct: 392 GNLIGLDTLGLEMNQLTGVIPNSIGKLQNLGVLALGGNKISGNIPSSMGNITSLLEVYLS 451
Query: 436 NNNLSGVIPS 445
NNL G IPS
Sbjct: 452 ANNLQGRIPS 461
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/430 (48%), Positives = 283/430 (65%), Gaps = 1/430 (0%)
Query: 16 EGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSL 75
E DR +L AFK+ I DP IL+SWN+S HFC+W G+TCG RH+RVI +DL S LSGSL
Sbjct: 33 ETDRLSLLAFKAHITDDPLHILSSWNESLHFCKWSGITCGSRHQRVIEIDLESSRLSGSL 92
Query: 76 SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTV 135
+ IGNLSFLR +NL +N++ IP E GRLFRL L L NS G+IP N+SYCS L
Sbjct: 93 TAFIGNLSFLRVLNLQNNSLSHYIPQEIGRLFRLRTLILRRNSFSGEIPVNISYCSNLLT 152
Query: 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195
L LG+N L G +P E L KL+ N LTG ISP NL+ LE++ + N+F G I
Sbjct: 153 LRLGRNNLTGKLPAELKSLSKLQMFEFEINYLTGEISPSFSNLSSLEIIYGTRNNFHGEI 212
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255
P+S+GQLK L++ ++G +N SG IPPSI NLS L SV NQ+HG+LP LG + P L+
Sbjct: 213 PNSIGQLKSLQTFSLGGSNFSGVIPPSIFNLSSLTILSVPINQLHGNLPPDLGQSLPKLE 272
Query: 256 FFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSG 315
++ N F+GSIP ++SNAS L + ++ N+F+GK + + NLS++ + +NLG+G
Sbjct: 273 VLRLYANKFSGSIPPTISNASNLVALDVSQNNFTGKVP-SLARLHNLSYIGIHKNNLGNG 331
Query: 316 ESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI 375
E D++ F+ +LAN + L +L+ N GVLP ++N S++L + G N++ G IPS I
Sbjct: 332 EDDDLSFLYTLANNTNLEILAITENNLGGVLPEMLSNFSTKLVHMAFGRNKIRGRIPSEI 391
Query: 376 GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLS 435
NL+ L L E+N+ G+IP +GKL NL L N+ SG IPS+LGN++SLS I L
Sbjct: 392 DNLIRLEALGFERNELTGSIPSSLGKLKNLIKLYLNDNNISGSIPSSLGNITSLSTISLK 451
Query: 436 NNNLSGVIPS 445
NNL G IPS
Sbjct: 452 VNNLEGSIPS 461
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147810637|emb|CAN63094.1| hypothetical protein VITISV_020143 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 222/431 (51%), Positives = 282/431 (65%), Gaps = 2/431 (0%)
Query: 16 EGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRH-RRVIALDLMSKALSGS 74
E DR AL AFK I DP +L+SWNDS HFC W GV C RRH RV L+L S L GS
Sbjct: 31 ETDRLALIAFKDGITQDPLGMLSSWNDSLHFCRWSGVYCSRRHVHRVTKLNLFSYGLVGS 90
Query: 75 LSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLT 134
LSPHIGNL+FLR I L +N+ G++P E G LFRL+ L L+NNS GK+P NL+YCS L
Sbjct: 91 LSPHIGNLTFLRTIVLQNNSFHGKVPSEIGGLFRLQVLVLSNNSFEGKVPTNLTYCSELR 150
Query: 135 VLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGN 194
VL+L NKL G IP E L KLK L L +NNLTG I LGNL+ L L S YNS EG+
Sbjct: 151 VLNLIDNKLEGKIPEELGSLSKLKALGLXRNNLTGKIPASLGNLSSLTLFSAIYNSLEGS 210
Query: 195 IPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNL 254
IP+ +G+ + L +G N L+G IP S+ NLS + F V NQ+ GSL +G FP+L
Sbjct: 211 IPEEIGR-TSIDQLQLGFNRLTGTIPSSLYNLSNMYYFLVGANQLEGSLSQDMGTAFPHL 269
Query: 255 KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGS 314
+ + N FTG +PVSLSNAS LE I +NSF+G N G ++NL + + + LGS
Sbjct: 270 RMLVLAANRFTGPVPVSLSNASMLEDIYAPDNSFTGPVPPNLGRLQNLRDITMAWNQLGS 329
Query: 315 GESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSG 374
D++ FINSLANC+ L+ +SF RN +G L +I N S+Q+ ++ LG NQ++G+IPSG
Sbjct: 330 AGGDDLSFINSLANCTWLQRMSFXRNFLKGPLVSTIANFSTQISLIDLGINQIHGTIPSG 389
Query: 375 IGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVL 434
I NLVNL L + +N G+IP +GKL +Q L GN SG IPS+LGNL+ L+ + L
Sbjct: 390 IKNLVNLTFLNLARNHLTGSIPSNIGKLYKIQVLLLLGNRLSGIIPSSLGNLTLLNNLDL 449
Query: 435 SNNNLSGVIPS 445
S NNL G IPS
Sbjct: 450 SGNNLMGEIPS 460
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 445 | ||||||
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.997 | 0.439 | 0.446 | 6.3e-92 | |
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.995 | 0.429 | 0.440 | 1.7e-91 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.968 | 0.420 | 0.447 | 3.5e-91 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.997 | 0.433 | 0.458 | 7.3e-91 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.997 | 0.440 | 0.427 | 4.1e-88 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.997 | 0.439 | 0.425 | 3.4e-84 | |
| UNIPROTKB|O24435 | 813 | O24435 "Receptor kinase-like p | 0.946 | 0.517 | 0.392 | 1.1e-66 | |
| TAIR|locus:2011339 | 1120 | AT1G35710 [Arabidopsis thalian | 0.838 | 0.333 | 0.377 | 5.8e-60 | |
| TAIR|locus:2170483 | 1173 | FLS2 "FLAGELLIN-SENSITIVE 2" [ | 0.966 | 0.366 | 0.343 | 6.5e-59 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.824 | 0.321 | 0.372 | 1.2e-57 |
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 200/448 (44%), Positives = 270/448 (60%)
Query: 1 MLLFF--ITLLHVAAF-EEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRR 57
+LL F + LL F +E DR AL FKS ++ D + +L+SWN S C W GVTCGR+
Sbjct: 5 LLLAFNALMLLETHGFTDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRK 64
Query: 58 HRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANN 117
++RV L+L L G +SP IGNLSFL ++L +N G IP E G+L RLE L + N
Sbjct: 65 NKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGIN 124
Query: 118 SLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGN 177
L G IP L CSRL L L N+L GS+P E L L L+L+ NN+ G + LGN
Sbjct: 125 YLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGN 184
Query: 178 LTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQN 237
LT LE ++LS+N+ EG IP + QL ++ SL + NN SG PP++ NLS L + N
Sbjct: 185 LTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYN 244
Query: 238 QIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFG 297
G L LG+ PNL F + N+FTGSIP +LSN S LE + + N+ +G FG
Sbjct: 245 HFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FG 303
Query: 298 GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQL 357
+ NL L L +++LGS S ++ F+ SL NC++L L GRN+ G LP SI NLS++L
Sbjct: 304 NVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKL 363
Query: 358 QVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417
L LG + GSIP IGNL+NL L ++QN G +P +GKLLNL+ L N SG
Sbjct: 364 VTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSG 423
Query: 418 KIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
IP+ +GN++ L + LSNN G++P+
Sbjct: 424 GIPAFIGNMTMLETLDLSNNGFEGIVPT 451
|
|
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 196/445 (44%), Positives = 275/445 (61%)
Query: 2 LLFFITLLHVAAFE-EGDRAALQAFKSMIAHDPQR-ILNSWNDSRHFCEWDGVTCGRRHR 59
LL + + A F E D AL FKS ++ + +R +L SWN S FC W GVTCGRR
Sbjct: 14 LLLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRE 73
Query: 60 RVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSL 119
RVI+L+L L+G +SP IGNLSFLR +NL DN+ IP + GRLFRL+ L ++ N L
Sbjct: 74 RVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLL 133
Query: 120 VGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLT 179
G+IP++LS CSRL+ + L N L +P E L KL L L KNNLTG LGNLT
Sbjct: 134 EGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLT 193
Query: 180 FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQI 239
L+ + +YN G IPD + +L ++ I +N+ SG PP++ N+S L + S++ N
Sbjct: 194 SLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSF 253
Query: 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGM 299
G+L + G PNL+ + N FTG+IP +L+N S LE I++N SG ++FG +
Sbjct: 254 SGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKL 313
Query: 300 KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQV 359
+NL L +++++LG+ S + FI ++ANC++L L G N+ G LP SI NLS+ L
Sbjct: 314 RNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTS 373
Query: 360 LFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKI 419
LFLG N + G+IP IGNLV+L L++E N G +P GKLLNLQ +D N SG+I
Sbjct: 374 LFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEI 433
Query: 420 PSTLGNLSSLSEIVLSNNNLSGVIP 444
PS GN++ L ++ L++N+ G IP
Sbjct: 434 PSYFGNMTRLQKLHLNSNSFHGRIP 458
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 193/431 (44%), Positives = 262/431 (60%)
Query: 15 EEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGS 74
EE D+ AL FKS ++ + +L SWNDS C W GV CG +HRRV +DL L+G
Sbjct: 37 EETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGV 96
Query: 75 LSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLT 134
+SP +GNLSFLR +NL DN G IP E G LFRL+ L ++NN G IP LS CS L+
Sbjct: 97 VSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLS 156
Query: 135 VLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGN 194
L L N L +P EF L KL LSL +NNLTG LGNLT L+++ YN EG
Sbjct: 157 TLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGE 216
Query: 195 IPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNL 254
IP + +LK++ I +N +G PP I NLS L+ S++ N G+L G PNL
Sbjct: 217 IPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNL 276
Query: 255 KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGS 314
+ + N FTG+IP +LSN S L + I +N +GK ++FG ++NL L L +++LG+
Sbjct: 277 QILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGN 336
Query: 315 GESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSG 374
S ++ F+ +L NCS+L+ L+ G N+ G LP I NLS+QL L LG N + GSIP G
Sbjct: 337 YSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHG 396
Query: 375 IGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVL 434
IGNLV+L L + +N G +P +G+L L+ + N SG+IPS+LGN+S L+ + L
Sbjct: 397 IGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYL 456
Query: 435 SNNNLSGVIPS 445
NN+ G IPS
Sbjct: 457 LNNSFEGSIPS 467
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| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
Identities = 209/456 (45%), Positives = 275/456 (60%)
Query: 1 MLLFFITLLHVAAFEE-----GDRAALQAFKSMIAHDPQRILNSWNDSRH--FCEWDGVT 53
+LLF LL ++ ++ GD AL +FKS + + + L SWN S H C W GV
Sbjct: 10 VLLFSALLLCPSSSDDDGDAAGDELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVV 69
Query: 54 CGRRHRR----VIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRL 109
CGRR RR V+ L L S LSG +SP +GNLSFLRE++L DN + GEIPPE RL RL
Sbjct: 70 CGRRRRRHPHRVVKLLLRSSNLSGIISPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRL 129
Query: 110 EALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEF-VFLYKLKGLSLHKNNLT 168
+ L L++NS+ G IPA + C++LT L L N+L G IP E L L L L+KN L+
Sbjct: 130 QLLELSDNSIQGSIPAAIGACTKLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLS 189
Query: 169 GGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSF 228
G I LGNLT L+ LS+N G IP SLGQL L ++ +G NNLSG IP SI NLS
Sbjct: 190 GEIPSALGNLTSLQEFDLSFNRLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSS 249
Query: 229 LVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288
L FSV +N++ G +P+ L+ + N F G IP S++NAS L VIQI N F
Sbjct: 250 LRAFSVRENKLGGMIPTNAFKTLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLF 309
Query: 289 SGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPH 348
SG + FG ++NL+ L L + + E D+ GFI+ L NCSKL+ L+ G N GVLP+
Sbjct: 310 SGIITSGFGRLRNLTELYLWRNLFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPN 369
Query: 349 SITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGL 408
S +NLS+ L L L N++ GSIP IGNL+ L L + N F G++P +G+L NL L
Sbjct: 370 SFSNLSTSLSFLALELNKITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGIL 429
Query: 409 DFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
N+ SG IP +GNL+ L+ ++L N SG IP
Sbjct: 430 LAYENNLSGSIPLAIGNLTELNILLLGTNKFSGWIP 465
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| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 191/447 (42%), Positives = 263/447 (58%)
Query: 1 MLLFFITLLHVAAF---EEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRR 57
+LL F L+ + A+ +E DR AL KS ++ + L++WN+S C W V CGR+
Sbjct: 5 LLLAFNALMQLEAYGFTDESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRK 64
Query: 58 HRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANN 117
H+RV LDL L G +SP IGNLSFL ++L +N+ G IP E G LFRL+ L + N
Sbjct: 65 HKRVTRLDLGGLQLGGVISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFN 124
Query: 118 SLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGN 177
L G+IPA+LS CSRL L L N L +P E L KL L L N+L G F+ N
Sbjct: 125 YLEGEIPASLSNCSRLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRN 184
Query: 178 LTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQN 237
LT L +++L YN EG IPD + L ++ SL + +NN SG PP+ NLS L N + N
Sbjct: 185 LTSLIVLNLGYNHLEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGN 244
Query: 238 QIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFG 297
G+L G PN+ + NF TG+IP +L+N S LE+ I N +G S NFG
Sbjct: 245 GFSGNLKPDFGNLLPNIHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFG 304
Query: 298 GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQL 357
++NL +L L +++LGS ++ F+++L NCS L LS N+ G LP SI N+S++L
Sbjct: 305 KLENLHYLELANNSLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTEL 364
Query: 358 QVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417
VL L N +YGSIP IGNL+ L L + N G +P +G L+ L L N FSG
Sbjct: 365 TVLNLKGNLIYGSIPHDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSG 424
Query: 418 KIPSTLGNLSSLSEIVLSNNNLSGVIP 444
+IPS +GNL+ L ++ LSNN+ G++P
Sbjct: 425 EIPSFIGNLTQLVKLYLSNNSFEGIVP 451
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| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
Identities = 190/447 (42%), Positives = 259/447 (57%)
Query: 1 MLLFFIT--LLHVAAF-EEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRR 57
+LL F LL F +E DR AL FKS ++ + +L+SWN+S C W VTCGR+
Sbjct: 5 LLLSFSAHLLLGADGFTDETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRK 64
Query: 58 HRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANN 117
H+RV L+L L G +SP IGN+SFL ++L DN G IP E G LFRLE L++A N
Sbjct: 65 HKRVTHLNLGGLQLGGIVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFN 124
Query: 118 SLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGN 177
SL G IPA LS CSRL L L N L +P E L KL L L +NNL G + LGN
Sbjct: 125 SLEGGIPATLSNCSRLLNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSLGN 184
Query: 178 LTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQN 237
LT L+ + + N+ EG +PD L +L ++ L + +N G PP+I NLS L + + +
Sbjct: 185 LTSLKSLGFTDNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGS 244
Query: 238 QIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFG 297
GSL G PN++ + +N G+IP +LSN S L+ I N +G NFG
Sbjct: 245 GFSGSLKPDFGNLLPNIRELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFG 304
Query: 298 GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQL 357
+ +L +L L + LGS ++ FI+SL NC+ L++LS G + G LP SI N+S++L
Sbjct: 305 KVPSLQYLDLSENPLGSYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTEL 364
Query: 358 QVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417
L L N +GSIP IGNL+ L L + +N G +P +GKLL L L N SG
Sbjct: 365 ISLNLIGNHFFGSIPQDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSG 424
Query: 418 KIPSTLGNLSSLSEIVLSNNNLSGVIP 444
+IPS +GNL+ L + LSNN+ G++P
Sbjct: 425 EIPSFIGNLTQLEILYLSNNSFEGIVP 451
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| UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 172/438 (39%), Positives = 231/438 (52%)
Query: 17 GDRAALQAFKSMIAHDPQRILNSWNDSRH--FCEWDGVTCGRRH-RRVIALDLMSKALSG 73
GD AL +FKS + + + L SWN S H C W GV CGRRH RV+ L L S L+G
Sbjct: 33 GDELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAG 92
Query: 74 SLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRL 133
+SP +GNLSFLR + L DN + G+IP E RL RL+ L L NSL G+IPA L + L
Sbjct: 93 IISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSL 152
Query: 134 TVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEG 193
+VL L N L G+IP L L L+L +N L+G I G L L +SL++N+ G
Sbjct: 153 SVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSG 212
Query: 194 NIPDSLGQLKELKSLAIGVNNLSGKIPPS-ICNLSFLVNFSVSQNQIHGSLPSCLGLNFP 252
IPD + + L + N LSG +P + NL L + NQ HG +P+ +G N
Sbjct: 213 AIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGRIPASIG-NAS 271
Query: 253 NLKFFQIDQNFFTGSIPVSLS---NASKLEV---IQIANNSFSGKFSVNFGGMKNLSHLI 306
N+ F I N F+G +P + N +LE+ + A + KF NL +
Sbjct: 272 NISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMTALTNCSNLQEVE 331
Query: 307 LQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQ 366
L G D +++L+ S L LS N+ G LP I NL + LQ L L N
Sbjct: 332 LGGCKFGGVLPDS---VSNLS--SSLVSLSIRDNKISGSLPRDIGNLVN-LQYLSLANNS 385
Query: 367 LYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNL 426
L GS+PS L NL L ++ N+ IG++P +G L L ++ N F G IPSTLGNL
Sbjct: 386 LTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTLGNL 445
Query: 427 SSLSEIVLSNNNLSGVIP 444
+ L +I L +NN G IP
Sbjct: 446 TKLFQINLGHNNFIGQIP 463
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| TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 5.8e-60, P = 5.8e-60
Identities = 144/381 (37%), Positives = 204/381 (53%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
+DL LSG++ P GNLS L +L N + GEI P G L L L+L N L I
Sbjct: 107 VDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVI 166
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL 183
P+ L +T L+L QNKL GSIP L L L L++N LTG I P LGN+ +
Sbjct: 167 PSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTD 226
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243
++LS N G+IP +LG LK L L + N L+G IPP I N+ + N ++SQN++ GS+
Sbjct: 227 LALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSI 286
Query: 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303
PS LG N NL + QN+ TG IP L N + ++++NN +G + G +KNL+
Sbjct: 287 PSSLG-NLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLT 345
Query: 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLG 363
L L + L E+G + S+ + L N+ G +P S NL + L L+L
Sbjct: 346 ILYLYENYLTGVIPPELGNMESMID------LQLNNNKLTGSIPSSFGNLKN-LTYLYLY 398
Query: 364 FNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTL 423
N L G IP +GN+ ++ L + QN+ G++P G L+ L NH SG IP +
Sbjct: 399 LNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGV 458
Query: 424 GNLSSLSEIVLSNNNLSGVIP 444
N S L+ ++L NN +G P
Sbjct: 459 ANSSHLTTLILDTNNFTGFFP 479
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| TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.5e-59, P = 6.5e-59
Identities = 152/443 (34%), Positives = 229/443 (51%)
Query: 4 FFITLLHVAAFEEGDRAALQAFKSMIAHDPQRILNSWN--DSRHFCEWDGVTCGRRHRRV 61
FF L +FE + AL++FK+ I++DP +L+ W S C W G+TC V
Sbjct: 17 FFGIALAKQSFEP-EIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGH-V 74
Query: 62 IALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVG 121
+++ L+ K L G LSP I NL++L+ ++L N+ G+IP E G+L L L L N G
Sbjct: 75 VSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSG 134
Query: 122 KIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL 181
IP+ + + L L N L G +P E L + NNLTG I LG+L L
Sbjct: 135 SIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHL 194
Query: 182 ELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG 241
++ + N G+IP S+G L L L + N L+GKIP NL L + +++N + G
Sbjct: 195 QMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEG 254
Query: 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKN 301
+P+ +G N +L ++ N TG IP L N +L+ ++I N + + +
Sbjct: 255 DIPAEIG-NCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQ 313
Query: 302 LSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLF 361
L+HL L ++L S+E+GF+ SL VL+ N F G P SITNL + L VL
Sbjct: 314 LTHLGLSENHLVGPISEEIGFLESL------EVLTLHSNNFTGEFPQSITNLRN-LTVLT 366
Query: 362 LGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPS 421
+GFN + G +P+ +G L NL L+ N G IP + L+ LD N +G+IP
Sbjct: 367 VGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPR 426
Query: 422 TLGNLSSLSEIVLSNNNLSGVIP 444
G ++ L+ I + N+ +G IP
Sbjct: 427 GFGRMN-LTFISIGRNHFTGEIP 448
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| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 1.2e-57, P = 1.2e-57
Identities = 142/381 (37%), Positives = 212/381 (55%)
Query: 68 SKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANL 127
+K +SG + IG+ S L + L + ++ G +P G+L +LE L + + G+IP++L
Sbjct: 211 NKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDL 270
Query: 128 SYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLS 187
CS L L L +N L GSIP E L KL+ L L +N+L GGI +GN + L+++ LS
Sbjct: 271 GNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLS 330
Query: 188 YNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCL 247
N G+IP S+G+L L+ I N SG IP +I N S LV + +NQI G +PS L
Sbjct: 331 LNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSEL 390
Query: 248 GLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLIL 307
G L F N GSIP L++ + L+ + ++ NS +G ++NL+ L+L
Sbjct: 391 G-TLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLL 449
Query: 308 QSSNLGSGESDEMGFI-NSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGF-- 364
S++L GFI + NCS L L G N+ G +P I +L ++ FL F
Sbjct: 450 ISNSLS-------GFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLK---KINFLDFSS 499
Query: 365 NQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLG 424
N+L+G +P IG+ L ++ + N G++P + L LQ LD N FSGKIP++LG
Sbjct: 500 NRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLG 559
Query: 425 NLSSLSEIVLSNNNLSGVIPS 445
L SL++++LS N SG IP+
Sbjct: 560 RLVSLNKLILSKNLFSGSIPT 580
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XI.617.1 | hypothetical protein (973 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 445 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-69 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-51 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-50 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-32 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-15 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-11 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-09 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 3e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 7e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 8e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 9e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
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Score = 235 bits (602), Expect = 6e-69
Identities = 180/513 (35%), Positives = 252/513 (49%), Gaps = 78/513 (15%)
Query: 1 MLLFFITLLHVAAFEEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRR 60
ML F + EE + L +FKS I +DP + L++WN S C W G+TC R
Sbjct: 15 MLFFLFLNFSMLHAEELE--LLLSFKSSI-NDPLKYLSNWNSSADVCLWQGITC-NNSSR 70
Query: 61 VIALDLMSKALSGSLSPHI----------------------------------------- 79
V+++DL K +SG +S I
Sbjct: 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130
Query: 80 ------GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRL 133
G++ L ++L +N + GEIP + G L+ L L N LVGKIP +L+ + L
Sbjct: 131 TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190
Query: 134 TVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEG 193
L+L N+LVG IP E + LK + L NNL+G I +G LT L + L YN+ G
Sbjct: 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250
Query: 194 NIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPN 253
IP SLG LK L+ L + N LSG IPPSI +L L++ +S N + G +P L + N
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQN 309
Query: 254 LKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLG 313
L+ + N FTG IPV+L++ +L+V+Q+ +N FSG+ N G NL+ L L ++NL
Sbjct: 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL- 368
Query: 314 SGESDE-----------MGFINS--------LANCSKLRVLSFGRNQFRGVLPHSITNLS 354
+GE E + F NS L C LR + N F G LP T L
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL- 427
Query: 355 SQLQVLFLGF--NQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGG 412
L V FL N L G I S ++ +L +L++ +N+F G +P G L+ LD
Sbjct: 428 -PL-VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSR 484
Query: 413 NHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
N FSG +P LG+LS L ++ LS N LSG IP
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 4e-51
Identities = 136/382 (35%), Positives = 192/382 (50%), Gaps = 11/382 (2%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
L L S L G + +G + L+ I L N + GEIP E G L L L L N+L G I
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL 183
P++L L L L QNKL G IP L KL L L N+L+G I + L LE+
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243
+ L N+F G IP +L L L+ L + N SG+IP ++ + L +S N + G +
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372
Query: 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303
P L + NL + N G IP SL L +++ +NSFSG+ F + +
Sbjct: 373 PEGL-CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431
Query: 304 HLILQSSNLGSGESDEMGFINSLA-NCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL 362
L + ++NL G INS + L++LS RN+F G LP S S +L+ L L
Sbjct: 432 FLDISNNNL-------QGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDL 482
Query: 363 GFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPST 422
NQ G++P +G+L L L + +N+ G IP E+ L LD N SG+IP++
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542
Query: 423 LGNLSSLSEIVLSNNNLSGVIP 444
+ LS++ LS N LSG IP
Sbjct: 543 FSEMPVLSQLDLSQNQLSGEIP 564
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 4e-50
Identities = 126/375 (33%), Positives = 186/375 (49%), Gaps = 9/375 (2%)
Query: 71 LSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYC 130
LSG + IG L+ L ++L+ N + G IP G L L+ LFL N L G IP ++
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283
Query: 131 SRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNS 190
+L L L N L G IP + L L+ L L NN TG I L +L L+++ L N
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343
Query: 191 FEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLN 250
F G IP +LG+ L L + NNL+G+IP +C+ L + N + G +P LG
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-A 402
Query: 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSS 310
+L+ ++ N F+G +P + + + I+NN+ G+ + M +L L L +
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462
Query: 311 NLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGS 370
G D G +L L RNQF G +P + +LS +Q L L N+L G
Sbjct: 463 KFFGGLPDSFG-------SKRLENLDLSRNQFSGAVPRKLGSLSELMQ-LKLSENKLSGE 514
Query: 371 IPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLS 430
IP + + L L + NQ G IP ++ L LD N SG+IP LGN+ SL
Sbjct: 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574
Query: 431 EIVLSNNNLSGVIPS 445
++ +S+N+L G +PS
Sbjct: 575 QVNISHNHLHGSLPS 589
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 7e-32
Identities = 120/384 (31%), Positives = 173/384 (45%), Gaps = 59/384 (15%)
Query: 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNS 118
+++I+LDL +LSG + + L L ++L N G+IP L RL+ L L +N
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343
Query: 119 LVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNL 178
G+IP NL + LTVL L N L G IP +GL GNL
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIP---------EGLCSS------------GNL 382
Query: 179 TFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNF-SVSQN 237
L L S NS EG IP SLG + L+ + + N+ SG++P L LV F +S N
Sbjct: 383 FKLILFS---NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP-LVYFLDISNN 438
Query: 238 QIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFG 297
+ G + S + P+L+ + +N F G +P S + +LE + ++ N FSG G
Sbjct: 439 NLQGRINS-RKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLG 496
Query: 298 GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQL 357
+ L L L S N SGE + L++C KL L
Sbjct: 497 SLSELMQLKL-SENKLSGEIPD-----ELSSCKKLVSLD--------------------- 529
Query: 358 QVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417
L NQL G IP+ + L L + QNQ G IP+ +G + +L ++ NH G
Sbjct: 530 ----LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585
Query: 418 KIPSTLGNLSSLSEIVLSNNNLSG 441
+PST L+ + V N +L G
Sbjct: 586 SLPSTGAFLAINASAVAGNIDLCG 609
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 1e-15
Identities = 39/88 (44%), Positives = 58/88 (65%)
Query: 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195
L L L G IP + L L+ ++L N++ G I P LG++T LE++ LSYNSF G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIPPSI 223
P+SLGQL L+ L + N+LSG++P ++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 49 WDGVTCG----RRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFG 104
W G C + + L L ++ L G + I L L+ INL N+I+G IPP G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463
Query: 105 RLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIP 148
+ LE L L+ NS G IP +L + L +L+L N L G +P
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 340 NQ-FRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQE 398
NQ RG +P+ I+ L LQ + L N + G+IP +G++ +L +L + N F G+IP+
Sbjct: 427 NQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485
Query: 399 MGKLLNLQGLDFGGNHFSGKIPSTLG 424
+G+L +L+ L+ GN SG++P+ LG
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 3e-11
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 25/159 (15%)
Query: 57 RHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLAN 116
+R+ LDL SG++ +G+LS L ++ L +N + GEIP E
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-------------- 518
Query: 117 NSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLG 176
LS C +L L L N+L G IP F + L L L +N L+G I LG
Sbjct: 519 ----------LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568
Query: 177 NLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNL 215
N+ L V++S+N G++P S G + + A+ N
Sbjct: 569 NVESLVQVNISHNHLHGSLP-STGAFLAINASAVAGNID 606
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 365 NQ-LYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTL 423
NQ L G IP+ I L +L + + N G IP +G + +L+ LD N F+G IP +L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486
Query: 424 GNLSSLSEIVLSNNNLSGVIPS 445
G L+SL + L+ N+LSG +P+
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-09
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 18 DRAALQAFKSMIAHDPQRILNSWNDS-RHFCEWDGVTC 54
DR AL AFKS + DP L+SWN S C W GVTC
Sbjct: 4 DRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 180 FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQI 239
F++ + L G IP+ + +L+ L+S+ + N++ G IPPS+ +++ L +S N
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSL 272
+GS+P LG +L+ ++ N +G +P +L
Sbjct: 479 NGSIPESLGQ-LTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 159 GLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218
GL L L G I + L L+ ++LS NS GNIP SLG + L+ L + N+ +G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLG 248
IP S+ L+ L +++ N + G +P+ LG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 9e-09
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 209 AIGVNN--LSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG 266
+G++N L G IP I L L + ++S N I G++P LG + +L+ + N F G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNG 480
Query: 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298
SIP SL + L ++ + NS SG+ GG
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 321 GFI-NSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLV 379
GFI N ++ L+ ++ N RG +P S+ +++S L+VL L +N GSIP +G L
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGSIPESLGQLT 490
Query: 380 NLYLLAMEQNQFIGTIPQEMGKLL 403
+L +L + N G +P +G L
Sbjct: 491 SLRILNLNGNSLSGRVPAALGGRL 514
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 1e-06
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 9/173 (5%)
Query: 278 LEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGF-----INSLANCSKL 332
L ++ + + ++ G+ +L + L D I+ L + L
Sbjct: 59 LLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNL 118
Query: 333 RVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI 392
L N +P I L S L+ L L N++ S+PS + NL NL L + N +
Sbjct: 119 TSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFND-L 175
Query: 393 GTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
+P+ + L NL LD GN S +P + LS+L E+ LSNN++ ++ S
Sbjct: 176 SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSS 227
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNS 118
R + +++L ++ G++ P +G+++ L ++L N+ G IP G+L L L L NS
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501
Query: 119 LVGKIPANL 127
L G++PA L
Sbjct: 502 LSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 71/227 (31%), Positives = 100/227 (44%), Gaps = 17/227 (7%)
Query: 122 KIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTF- 180
NL L L L N+L +I L L L L NN+T I P +G L
Sbjct: 84 DGSENLLNLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDLDNNNITD-IPPLIGLLKSN 141
Query: 181 LELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240
L+ + LS N E ++P L L LK+L + N+LS +P + NLS L N +S N+I
Sbjct: 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199
Query: 241 GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMK 300
LP + L L+ + N + SLSN L ++++NN + G +
Sbjct: 200 -DLPPEIELL-SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLS 255
Query: 301 NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLP 347
NL L L S+N S I+SL + + LR L N LP
Sbjct: 256 NLETLDL-SNNQIS-------SISSLGSLTNLRELDLSGNSLSNALP 294
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 307 LQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQ 366
LQS NL SG S SL + + L VL N F G +P S+ L+S L++L L N
Sbjct: 444 LQSINL-SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS-LRILNLNGNS 501
Query: 367 LYGSIPSGIG 376
L G +P+ +G
Sbjct: 502 LSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 8e-04
Identities = 77/271 (28%), Positives = 108/271 (39%), Gaps = 42/271 (15%)
Query: 170 GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNL-SF 228
S L NL L + L+ N NI L +L L SL + NN++ IPP I L S
Sbjct: 84 DGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSN 141
Query: 229 LVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288
L +S N+I SLPS L N PNLK + N + +P LSN S L + ++ N
Sbjct: 142 LKELDLSDNKI-ESLPSPLR-NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198
Query: 289 SGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPH 348
S + L L L ++++ ++SL+N L L N+
Sbjct: 199 S-DLPPEIELLSALEELDLSNNSIIE-------LLSSLSNLKNLSGLELSNNKLE----- 245
Query: 349 SITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGL 408
+P IGNL NL L + NQ + +G L NL+ L
Sbjct: 246 ---------------------DLPESIGNLSNLETLDLSNNQ--ISSISSLGSLTNLREL 282
Query: 409 DFGGNHFSGKIPSTLGNLSSLSEIVLSNNNL 439
D GN S +P L L ++ L
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLLNLLLTL 313
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 9e-04
Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 39/246 (15%)
Query: 195 IPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNL 254
+P SL +L L L+ + S ++ NL L + ++ N++ ++ L NL
Sbjct: 62 LPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRSNISELL--ELTNL 118
Query: 255 KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGS 314
+D N T P+ S L+ + +++N + NL +L L ++L
Sbjct: 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD 177
Query: 315 GESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSG 374
L+N S L L N+ + L S L+ L L N
Sbjct: 178 -------LPKLLSNLSNLNNLDLSGNKISDL--PPEIELLSALEELDLSNNS-------- 220
Query: 375 IGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVL 434
I + + L NL GL+ N +P ++GNLS+L + L
Sbjct: 221 -----------------IIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDL 262
Query: 435 SNNNLS 440
SNN +S
Sbjct: 263 SNNQIS 268
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.004
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 108 RLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNL 167
L++L L+NN L L VL L N L P F L L+ L L NNL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 445 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.94 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.94 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.93 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.9 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.87 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.85 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.85 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.83 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.77 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.77 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.77 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.65 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.42 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.32 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.31 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.22 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.17 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.17 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.15 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.15 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.12 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.07 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.06 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.06 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.01 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.01 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.99 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.98 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.86 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.83 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.77 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.73 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.68 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.66 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.64 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.31 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.3 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.23 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.2 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.17 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.08 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.06 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.04 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.02 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.97 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.94 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.84 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.78 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.76 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.69 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.62 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.39 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.31 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.25 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.12 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.97 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.9 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.43 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.32 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.92 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.85 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.15 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 93.82 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.86 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 91.07 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.59 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 88.13 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 84.54 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 84.54 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 83.83 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=426.42 Aligned_cols=428 Identities=34% Similarity=0.530 Sum_probs=291.8
Q ss_pred hhccChhhHHHHHHHHHhccCCCCCCCCCCCCCCCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEC
Q 042446 11 VAAFEEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINL 90 (445)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L 90 (445)
-++..+.+..++.++++.+. +|..+...|....++|.|.|+.|... .+|+.++++++.+.+.++..+..+++|++|++
T Consensus 23 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~L 100 (968)
T PLN00113 23 FSMLHAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINL 100 (968)
T ss_pred ccCCCHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEEC
Confidence 34446678889999999985 78888899998889999999999864 68999999999999888889999999999999
Q ss_pred CCCcccccCCcccc-CCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCC
Q 042446 91 MDNTIQGEIPPEFG-RLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG 169 (445)
Q Consensus 91 ~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (445)
++|.+.+.+|..+. .+.+|++|++++|.+.+.+|. ..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+
T Consensus 101 s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred CCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc
Confidence 99999888887654 788888888888888766654 346777777777777766667667777777777777777666
Q ss_pred CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCccccc
Q 042446 170 GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGL 249 (445)
Q Consensus 170 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 249 (445)
..|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence 66666777777777777777766666666677777777777777666666666666677777777766666666655554
Q ss_pred CCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCC----------
Q 042446 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDE---------- 319 (445)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---------- 319 (445)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......
T Consensus 259 -l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 259 -LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred -CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 666666666666666556666666666666666666665555555666666666666666554411100
Q ss_pred --------CcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcc
Q 042446 320 --------MGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQF 391 (445)
Q Consensus 320 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 391 (445)
..++..+..+++|+.|++++|.+.+.+|..+.... +|+.|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 02233344444455555555554444444444433 455555555555545555555566666666666666
Q ss_pred eecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 392 IGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 392 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
.+..|..+..+++|+.|++++|.+.+.++..+..+++|+.|++++|++.+.+|
T Consensus 417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 65666666666666666666666666666555666666777777776666655
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=373.28 Aligned_cols=384 Identities=34% Similarity=0.505 Sum_probs=284.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.+++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 56788888888888778888888888888888888888778888888888888888888887778888888888888888
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+.+..|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 88887777777777788888888888877777777777777888888877777777777777777777777777777767
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
+|..+..+++|+.|++++|.+.+.+|..+.. .++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 7777777777777777777766655555543 455555555555555555555555555555555555555444444555
Q ss_pred CCCCCEEEccCCcCCCCCCCCC------------------cccccccCCCCCcEEEccCCcceecCChhhhhccccCcEE
Q 042446 299 MKNLSHLILQSSNLGSGESDEM------------------GFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL 360 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 360 (445)
+++|+.|++++|.+........ .++. ....++|+.|++++|++.+.+|..+..++ +|++|
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L 504 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLS-ELMQL 504 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc-ccccccceEEECcCCccCCccChhhhhhh-ccCEE
Confidence 5555555555554433111000 1111 12346778888888888777777777766 88888
Q ss_pred EcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcce
Q 042446 361 FLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 361 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.++++|+.+++++|++.
T Consensus 505 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 88888888888888888888999999999888888888888899999999999988888888888889999999999998
Q ss_pred ecCCC
Q 042446 441 GVIPS 445 (445)
Q Consensus 441 ~~~p~ 445 (445)
|.+|+
T Consensus 585 ~~~p~ 589 (968)
T PLN00113 585 GSLPS 589 (968)
T ss_pred eeCCC
Confidence 88874
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=279.41 Aligned_cols=350 Identities=20% Similarity=0.213 Sum_probs=268.6
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 042446 84 FLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLH 163 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (445)
..+.|++++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|++.+|.+...-...+..++.|++|+++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3467888888888777777888888888888888887 778777777778888888888876666677788888888888
Q ss_pred cccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCC
Q 042446 164 KNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243 (445)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 243 (445)
.|.+...--..+..-.++++|++++|.|+......|..+.+|.+|.+++|.++...+..|.++++|+.|++..|++. .+
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-iv 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IV 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-ee
Confidence 88887655556666678888888888888766677888888888888888888555566667888888888888875 44
Q ss_pred CcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccc
Q 042446 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFI 323 (445)
Q Consensus 244 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 323 (445)
....++++++|+.|.+..|++.......|..+.++++|+|+.|++......++.+++.|+.|++++|.+..+...
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d----- 311 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID----- 311 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc-----
Confidence 344455688888888888887765566777788888888888888777777888888888888888888775544
Q ss_pred ccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecC---Chhhh
Q 042446 324 NSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTI---PQEMG 400 (445)
Q Consensus 324 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~ 400 (445)
++.-+++|++|+|+.|+++...+..+..+. .|++|.|+.|.++...-..+..+.+|+.|+|+.|.+...+ ...|.
T Consensus 312 -~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 312 -SWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred -hhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 556678888888888888866666666665 7888888888887444445677788888888888776332 34567
Q ss_pred CCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceec
Q 042446 401 KLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 401 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
.+++|+.|.+.+|+++..--.+|.+++.|+.|++.+|.|-+.
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred cchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 788888888888888833336788888888888888887664
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=276.30 Aligned_cols=385 Identities=23% Similarity=0.226 Sum_probs=329.2
Q ss_pred CCCCCCcceeeeEeCCCC--------------CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCC
Q 042446 41 NDSRHFCEWDGVTCGRRH--------------RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRL 106 (445)
Q Consensus 41 ~~~~~~c~~~~~~~~~~~--------------~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 106 (445)
.+.+..|.-....|+... ..++.+++++|.++..-+..+.++++|+.+.+.+|.++ .+|......
T Consensus 46 cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~s 124 (873)
T KOG4194|consen 46 CPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHES 124 (873)
T ss_pred CCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccc
Confidence 344455666666666432 35678999999998877778899999999999999998 888877778
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEee
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSL 186 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 186 (445)
.+|+.|++.+|.|+..-...+..++.||+||++.|.++...-..|..-.++++|++++|.++..-...|..+.+|..|.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 88999999999999777788899999999999999998555567888889999999999999877788899999999999
Q ss_pred cccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc
Q 042446 187 SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG 266 (445)
Q Consensus 187 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (445)
+.|.++...+..|.++++|+.|++..|.+.-.-.-.|..+++|+.|.+..|.+. .+.+..+.++.++++|++..|.+..
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhh
Confidence 999999777778888999999999999998444667788999999999999998 5655556669999999999999987
Q ss_pred cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC
Q 042446 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346 (445)
Q Consensus 267 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 346 (445)
.-..++.+++.|+.|+++.|.|..+.+..+..+++|++|+++.|+++..... ++..+..|++|.|+.|++...-
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~------sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG------SFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh------HHHHHHHhhhhcccccchHHHH
Confidence 7778899999999999999999999999999999999999999999885543 6788899999999999997433
Q ss_pred ChhhhhccccCcEEEcccCccccc---CCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccc
Q 042446 347 PHSITNLSSQLQVLFLGFNQLYGS---IPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTL 423 (445)
Q Consensus 347 ~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 423 (445)
..++..+ ++|++|||+.|.+... ....+..+++|+.|.+.+|++...-..+|.++.+|+.|||.+|.|...-+.+|
T Consensus 358 e~af~~l-ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 358 EGAFVGL-SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred hhHHHHh-hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 3334444 4999999999998642 23456779999999999999995555899999999999999999997889999
Q ss_pred cCCCCCCeEEcc
Q 042446 424 GNLSSLSEIVLS 435 (445)
Q Consensus 424 ~~l~~L~~l~l~ 435 (445)
..+ .|++|.+.
T Consensus 437 e~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 437 EPM-ELKELVMN 447 (873)
T ss_pred ccc-hhhhhhhc
Confidence 998 89888775
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=273.89 Aligned_cols=369 Identities=25% Similarity=0.381 Sum_probs=321.4
Q ss_pred CcEEEEEcCCCCCc-ccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEE
Q 042446 59 RRVIALDLMSKALS-GSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLS 137 (445)
Q Consensus 59 ~~v~~l~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~ 137 (445)
+-|+.+|+++|.++ +.+|..+..++.++.|.|....+. .+|+.++.+.+|+.|.+.+|++. .+-..+..++.||.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 57889999999999 469999999999999999999997 89999999999999999999988 5666788899999999
Q ss_pred ccCCcCcc-cCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCc
Q 042446 138 LGQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216 (445)
Q Consensus 138 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 216 (445)
+.+|.+.. -+|..+..+..|.+|++++|++. ..|..+...+++-.|++++|+|.......+.++..|-.|++++|.+.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 99998763 36778889999999999999998 78888999999999999999999655556778999999999999998
Q ss_pred ccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCc-ccCcccCcCCCCCCEEECccCcCcccCccc
Q 042446 217 GKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFT-GSIPVSLSNASKLEVIQIANNSFSGKFSVN 295 (445)
Q Consensus 217 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (445)
.+|+.+..+.+|++|++++|++.-.....+. .+..|+.|.+++.+.+ ..+|.++..+.+|..++++.|.+. ..|..
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 8999999999999999999977522222222 2667888888887754 357889999999999999999987 67888
Q ss_pred ccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCccc-ccCCcc
Q 042446 296 FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLY-GSIPSG 374 (445)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~ 374 (445)
+..+++|+.|++++|+++.... ......+|++|+++.|+++ .+|.++..++ +|+.|...+|+++ +-+|++
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~-------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNM-------TEGEWENLETLNLSRNQLT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred HhhhhhhheeccCcCceeeeec-------cHHHHhhhhhhccccchhc-cchHHHhhhH-HHHHHHhccCcccccCCccc
Confidence 9999999999999999977432 3456678999999999998 8999999998 8999999999865 247999
Q ss_pred ccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 375 IGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 375 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
++.+..|+.+...+|.+. ..|+.++.|..|+.|.|+.|++. .+|++++-++-|+.|+++.|+-..-+|
T Consensus 312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999999999887 89999999999999999999998 889999999999999999999776555
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-34 Score=261.84 Aligned_cols=345 Identities=25% Similarity=0.374 Sum_probs=306.4
Q ss_pred cCCCCCCEEECCCCccc-ccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 042446 80 GNLSFLREINLMDNTIQ-GEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLK 158 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (445)
+-++.++..|+++|.+. +.+|.....+..++-|.+..+.+. .+|..++.+.+|++|.+++|++. .+-..+..++.||
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 44677899999999998 468999999999999999999998 89999999999999999999987 4555678899999
Q ss_pred EEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCc-cCcCCCCCcEEEccC
Q 042446 159 GLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPP-SICNLSFLVNFSVSQ 236 (445)
Q Consensus 159 ~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~ 236 (445)
.+.+.+|++.. -+|..+-++..|+.|++++|++. +.|..+...+++-.|++++|+|. .+|. .+.++..|-.|+++.
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcccc
Confidence 99999998763 57777889999999999999999 78999999999999999999998 5664 456789999999999
Q ss_pred CcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcC-cccCcccccCCCCCCEEEccCCcCCCC
Q 042446 237 NQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF-SGKFSVNFGGMKNLSHLILQSSNLGSG 315 (445)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~ 315 (445)
|++. .+|..+.. +.+|++|.+++|.+.-.....+..++.|+.|.+++.+- ...+|..+..+.+|..++++.|.+..
T Consensus 160 NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~- 236 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI- 236 (1255)
T ss_pred chhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-
Confidence 9987 77777766 89999999999987755556677788899999999764 34678888999999999999998866
Q ss_pred CCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcce-ec
Q 042446 316 ESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI-GT 394 (445)
Q Consensus 316 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~ 394 (445)
+|..+-+.++|+.|++++|+++ ++......+. +|++|+++.|+++ .+|.+++.++.|+.|.+.+|++. .-
T Consensus 237 ------vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 237 ------VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred ------chHHHhhhhhhheeccCcCcee-eeeccHHHHh-hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence 5668889999999999999998 6666677776 9999999999999 89999999999999999999887 46
Q ss_pred CChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 395 IPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 395 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
+|..++.+..|+.+..++|.+. .+|+.+++|++|+.|.++.|++.+
T Consensus 308 iPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 308 IPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred CccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee
Confidence 8999999999999999999999 999999999999999999999876
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-34 Score=252.89 Aligned_cols=366 Identities=26% Similarity=0.394 Sum_probs=240.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
.-++.++++++.++ .+|++++++..++.++.++|.+. ++|..+..+..|..++++.|.+. .+|..++.+..|+.++.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 34567777777765 45566666666666666666665 55666666666666666666555 45555555555555555
Q ss_pred cCCcCcccCCccccC-----------------------CCCCCEEecccccCCCCCCccCCCCCCcceEeeccccccccc
Q 042446 139 GQNKLVGSIPFEFVF-----------------------LYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~-----------------------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 195 (445)
.+|++. ..|..+.. ++.|+++++..|-+. .+|+.++.+.+|..|++..|.+. .+
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC
Confidence 555554 33333333 444555555555444 45555666666666666666665 44
Q ss_pred CcccCCCCCCCEEEccCCCCcccCCccCc-CCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcC
Q 042446 196 PDSLGQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSN 274 (445)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 274 (445)
| .|..+..|++|+++.|.+. .+|.... ++.++..||++.|++. ++|+.+.. +.+|.+|++++|.++ .+|..+++
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCccccc
Confidence 4 5666666666666666665 4444443 6777778888888776 77777665 777888888888777 46777777
Q ss_pred CCCCCEEECccCcCcccCcc-----------------------------------------cccCCCCCCEEEccCCcCC
Q 042446 275 ASKLEVIQIANNSFSGKFSV-----------------------------------------NFGGMKNLSHLILQSSNLG 313 (445)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~-----------------------------------------~l~~~~~L~~L~l~~~~~~ 313 (445)
+ +|+.|.+.||.+..+-.. ......+.+.|++++-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 7 888888888766311000 0001123344444444443
Q ss_pred CCCCCCC-------------------------------------------cccccccCCCCCcEEEccCCcceecCChhh
Q 042446 314 SGESDEM-------------------------------------------GFINSLANCSKLRVLSFGRNQFRGVLPHSI 350 (445)
Q Consensus 314 ~~~~~~~-------------------------------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 350 (445)
.++.+.| -++..+..+++|..|++++|-+. .+|..+
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~ 454 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEM 454 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhh
Confidence 3332221 11233556788888888887665 677777
Q ss_pred hhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCC
Q 042446 351 TNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLS 430 (445)
Q Consensus 351 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 430 (445)
+..- .|++|+++.|.|. ..|..+.....++.+-.++|++....+..+.++.+|..||+.+|++. .+|..+++|++|+
T Consensus 455 ~~lv-~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 455 GSLV-RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR 531 (565)
T ss_pred hhhh-hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence 7776 6888888888876 67777766677777777778887555566999999999999999999 8899999999999
Q ss_pred eEEccCCcce
Q 042446 431 EIVLSNNNLS 440 (445)
Q Consensus 431 ~l~l~~n~~~ 440 (445)
+|+++||+|.
T Consensus 532 hLeL~gNpfr 541 (565)
T KOG0472|consen 532 HLELDGNPFR 541 (565)
T ss_pred EEEecCCccC
Confidence 9999999997
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=237.27 Aligned_cols=359 Identities=20% Similarity=0.210 Sum_probs=270.5
Q ss_pred CcEEEEEcCCCCCcc--cccccccCCCCCCEEECCCCcc------cccCCccccCC-CCCCEEECCCCcCCCCCCccCcC
Q 042446 59 RRVIALDLMSKALSG--SLSPHIGNLSFLREINLMDNTI------QGEIPPEFGRL-FRLEALFLANNSLVGKIPANLSY 129 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~------~~~~~~~~~~~-~~L~~L~l~~~~i~~~~p~~l~~ 129 (445)
.+|+.+.+....+.. ..+.++.++++|+.|.+..+.. ...+|..+..+ .+|+.|.+.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 566666665444432 2344678899999999976532 23456666665 46999999999887 778777 4
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEE
Q 042446 130 CSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLA 209 (445)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 209 (445)
..+|++|++.++.+. .++..+..+++|+.|+++++.....+|. +..+++|+.|++.+|.....+|..++++++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 689999999999887 6777888999999999998765446664 78899999999999876668899999999999999
Q ss_pred ccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCc
Q 042446 210 IGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFS 289 (445)
Q Consensus 210 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (445)
+++|..-..+|..+ ++++|+.|++++|...+.+|.. .++|+.|+++++.+. .+|..+ .+++|++|.+.++...
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 99976555777665 7899999999999765555542 568999999999887 455544 5788888888764321
Q ss_pred c-------cCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEc
Q 042446 290 G-------KFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL 362 (445)
Q Consensus 290 ~-------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 362 (445)
. ..+.....+++|++|++++|.... .++..+..+++|+.|++++|...+.+|..+ .+ ++|++|++
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~------~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L-~sL~~L~L 832 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV------ELPSSIQNLHKLEHLEIENCINLETLPTGI-NL-ESLESLDL 832 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCcc------ccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc-cccCEEEC
Confidence 1 111223345789999999886544 466678889999999999886555667655 33 48999999
Q ss_pred ccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcce
Q 042446 363 GFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
++|.....+|.. ..+|+.|++++|.+. .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.-.
T Consensus 833 s~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 833 SGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 988644344432 367889999999887 78888889999999999997644467777788889999998888633
|
syringae 6; Provisional |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-30 Score=229.14 Aligned_cols=374 Identities=25% Similarity=0.384 Sum_probs=261.0
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..+..+++++|.+. .+.+.+..+..+.+|++.++.+. .+|.+++.+..++.++.++|++. .+|..++.++.|+.++.
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 35667889999886 45667888999999999999998 89999999999999999999998 89999999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+. ..|+.++.+..|..++..+|++. ..|..+.++.+|..+++.+|.+.. .|...-+++.|++++...|.++ .
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-T 197 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-c
Confidence 999998 78889999999999999999988 556666666667677776666652 3333323555555555555444 4
Q ss_pred CCccCcCCCCCcEEEccCCcCC---------------------CCCCcccccCCCCccEEEccCCcCcccCcccCcCCCC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIH---------------------GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASK 277 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~---------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 277 (445)
+|+.++.+.+|+.|+++.|++. ..+|......++++..|++++|++. ..|..+..+++
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs 276 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS 276 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence 5555555555544444444443 1555555556788888999999888 57888888888
Q ss_pred CCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCC-------------------------------C----cc
Q 042446 278 LEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDE-------------------------------M----GF 322 (445)
Q Consensus 278 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------------------------------~----~~ 322 (445)
|++||+++|.++ ..+..++++ +|+.|.+.||.+.++.... . ..
T Consensus 277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~ 354 (565)
T KOG0472|consen 277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES 354 (565)
T ss_pred hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence 999999999887 556678888 8999999888653211100 0 00
Q ss_pred cccccCCCCCcEEEccCCcceecCChhhhhccc--cCcEEEcccCccc-----------------------ccCCccccC
Q 042446 323 INSLANCSKLRVLSFGRNQFRGVLPHSITNLSS--QLQVLFLGFNQLY-----------------------GSIPSGIGN 377 (445)
Q Consensus 323 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~-----------------------~~~~~~~~~ 377 (445)
........+.+.|++++-+++ .+|+..+...+ -...++++.|++. +.+|..++.
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~ 433 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQ 433 (565)
T ss_pred ccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHh
Confidence 011122344566666665555 44544443220 1344445544442 134445566
Q ss_pred ccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc-----------------------ccccccccCCCCCCeEEc
Q 042446 378 LVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS-----------------------GKIPSTLGNLSSLSEIVL 434 (445)
Q Consensus 378 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-----------------------~~~~~~l~~l~~L~~l~l 434 (445)
+++|..|++++|-+. .+|..++.+-.|+.++++.|++. ...+..+.++.+|..|++
T Consensus 434 l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 778888888777666 77777777777888888877655 222334667788899999
Q ss_pred cCCcceecCC
Q 042446 435 SNNNLSGVIP 444 (445)
Q Consensus 435 ~~n~~~~~~p 444 (445)
.+|.+..++|
T Consensus 513 ~nNdlq~IPp 522 (565)
T KOG0472|consen 513 QNNDLQQIPP 522 (565)
T ss_pred CCCchhhCCh
Confidence 9998887554
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-28 Score=231.98 Aligned_cols=355 Identities=28% Similarity=0.360 Sum_probs=223.6
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEcc
Q 042446 60 RVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLG 139 (445)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~ 139 (445)
++.+++++++.+. ..|..+..+.+|+.|+++.|.+. ..|.+.+.+.+|++++|.+|.+. .+|..+..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 4889999999885 78888999999999999999998 78888999999999999999887 899999999999999999
Q ss_pred CCcCcccCCccccCCCC-------------------CCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccC
Q 042446 140 QNKLVGSIPFEFVFLYK-------------------LKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLG 200 (445)
Q Consensus 140 ~~~~~~~~~~~~~~l~~-------------------L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 200 (445)
+|.+. ..|..+..+.. ++.+++..+.+.+.++..+..+.. .+++.+|.+... .+.
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls 196 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLS 196 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhh
Confidence 99887 55544444333 444555555555555555544444 588888876521 122
Q ss_pred CCCCCCEEEc--------------------cCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEcc
Q 042446 201 QLKELKSLAI--------------------GVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQID 260 (445)
Q Consensus 201 ~l~~L~~L~l--------------------~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 260 (445)
++.+|+.+.. +.|.+.... .. ..-.+|+.++++.+++. .+|+++.. +++|+.+...
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~~-p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n 272 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD-VH-PVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNAN 272 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeec-cc-cccccceeeecchhhhh-cchHHHHh-cccceEeccc
Confidence 2223332222 222222000 00 01134555666666555 55544443 5666666666
Q ss_pred CCcCcc----------------------cCcccCcCCCCCCEEECccCcCcccCcccccC--------------------
Q 042446 261 QNFFTG----------------------SIPVSLSNASKLEVIQIANNSFSGKFSVNFGG-------------------- 298 (445)
Q Consensus 261 ~~~~~~----------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-------------------- 298 (445)
+|.++. .+|......+.|++|+|..|.+.......+.-
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 555531 23334444455555555555543221111110
Q ss_pred -----CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhh-hhccccCcEEEcccCcccccCC
Q 042446 299 -----MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSI-TNLSSQLQVLFLGFNQLYGSIP 372 (445)
Q Consensus 299 -----~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 372 (445)
++.|+.|.+.+|.+++ .....+.++++|+.|++++|++. .+|... ..+. .|++|++++|+++ .+|
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd------~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle-~LeeL~LSGNkL~-~Lp 423 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTD------SCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLE-ELEELNLSGNKLT-TLP 423 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccc------cchhhhccccceeeeeecccccc-cCCHHHHhchH-HhHHHhcccchhh-hhh
Confidence 1122333333344333 34455677777888888888776 455443 3344 7778888888877 667
Q ss_pred ccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCc
Q 042446 373 SGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNN 438 (445)
Q Consensus 373 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~ 438 (445)
..+..++.|+.|...+|.+. ..| .+..++.|+.+|++.|+++..........++|++|+++||.
T Consensus 424 ~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77777777888877777776 666 56678888888888888764433222333788888888886
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=220.17 Aligned_cols=333 Identities=18% Similarity=0.209 Sum_probs=255.5
Q ss_pred CcEEEEEcCCCC------CcccccccccCC-CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCC
Q 042446 59 RRVIALDLMSKA------LSGSLSPHIGNL-SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCS 131 (445)
Q Consensus 59 ~~v~~l~l~~~~------~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~ 131 (445)
++++.+.+..+. ....+|..+..+ .+|+.|.+.++.+. .+|..+ .+.+|+.|++.++.+. .++..+..++
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~ 634 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLT 634 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCC
Confidence 445555554332 222355666665 45999999999887 777766 5789999999999988 6788888999
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEcc
Q 042446 132 RLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIG 211 (445)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 211 (445)
+|++|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 99999999876544666 47889999999999987666888889999999999999986555677655 78999999999
Q ss_pred CCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc-------cCcccCcCCCCCCEEECc
Q 042446 212 VNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG-------SIPVSLSNASKLEVIQIA 284 (445)
Q Consensus 212 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~~L~~L~l~ 284 (445)
+|.....+|.. ..+|+.|+++++.+. .+|..+ .+++|++|.+.++.... ..+......++|+.|+++
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 98765455543 467899999999876 677655 37888888887643221 111222345789999999
Q ss_pred cCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEccc
Q 042446 285 NNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGF 364 (445)
Q Consensus 285 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 364 (445)
+|......|..+..+++|+.|++++|.... .++... .+++|+.|++++|.....+|.. +.+|++|++++
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~------~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~ 855 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLE------TLPTGI-NLESLESLDLSGCSRLRTFPDI----STNISDLNLSR 855 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcC------eeCCCC-CccccCEEECCCCCcccccccc----ccccCEeECCC
Confidence 997766778889999999999999875433 233333 6889999999998655455432 34899999999
Q ss_pred CcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCc
Q 042446 365 NQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNH 414 (445)
Q Consensus 365 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 414 (445)
|.++ .+|..+..+++|+.|++++|+....+|..+..+++|+.+++++|.
T Consensus 856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9998 688889999999999999987776788888889999999999986
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-25 Score=215.08 Aligned_cols=365 Identities=26% Similarity=0.327 Sum_probs=256.6
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEcc
Q 042446 60 RVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLG 139 (445)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~ 139 (445)
.++.+++..|.+-....+.+.+.-+|++|++++|.+. .+|..+..+.+|+.|+++.|-|. .+|....++.+|+++.|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 3666777776654332334445555999999999997 89999999999999999999998 788999999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccc-------------------ccccccCcccC
Q 042446 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYN-------------------SFEGNIPDSLG 200 (445)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-------------------~~~~~~~~~l~ 200 (445)
+|... ..|..+..+++|+.|+++.|.+. ..|..+..+..++.+..++| .+.+.++..+.
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~ 177 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY 177 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh
Confidence 99887 88999999999999999999887 45554444444444444444 44444444444
Q ss_pred CCCCCCEEEccCCCCcccCCccCcCC--------------------CCCcEEEccCCcCCCCCCcccccCCCCccEEEcc
Q 042446 201 QLKELKSLAIGVNNLSGKIPPSICNL--------------------SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQID 260 (445)
Q Consensus 201 ~l~~L~~L~l~~n~~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 260 (445)
.+.. .+++.+|.+... .+..+ ++++.|....|.+....+. . .+.+|++++++
T Consensus 178 ~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-p--~p~nl~~~dis 249 (1081)
T KOG0618|consen 178 NLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-P--VPLNLQYLDIS 249 (1081)
T ss_pred hhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-c--ccccceeeecc
Confidence 4444 577877776511 22222 3344444444544411111 1 15578888888
Q ss_pred CCcCcccCcccCcCCCCCCEEECccCcCccc----------------------CcccccCCCCCCEEEccCCcCCCCCCC
Q 042446 261 QNFFTGSIPVSLSNASKLEVIQIANNSFSGK----------------------FSVNFGGMKNLSHLILQSSNLGSGESD 318 (445)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~ 318 (445)
.+.+.+ +|.++..+.+|+.+....|.+... .+....+.++|++|++..|++...+..
T Consensus 250 ~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~ 328 (1081)
T KOG0618|consen 250 HNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDN 328 (1081)
T ss_pred hhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchH
Confidence 888874 568888888999888888877521 122234466777777777777664432
Q ss_pred CCccccc-------------------ccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCc-cccCc
Q 042446 319 EMGFINS-------------------LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPS-GIGNL 378 (445)
Q Consensus 319 ~~~~~~~-------------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~ 378 (445)
.+.++.. -..++.|+.|.+.+|.+++.....+.... +|+.|++++|++. .+|. .+.++
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsyNrL~-~fpas~~~kl 406 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK-HLKVLHLSYNRLN-SFPASKLRKL 406 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc-ceeeeeecccccc-cCCHHHHhch
Confidence 2111110 11245567777777777765555555554 8999999999887 4444 46678
Q ss_pred cCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceec
Q 042446 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
+.|++|+|++|+++ .+|..+..++.|+.|...+|++. ..| .+..++.|+.+|++.|+++..
T Consensus 407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 88999999999888 78888888999999999999988 667 677889999999999998754
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-24 Score=189.90 Aligned_cols=132 Identities=22% Similarity=0.173 Sum_probs=78.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCC-CcCCCCCCccCcCCCCCCEEE
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLAN-NSLVGKIPANLSYCSRLTVLS 137 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~p~~l~~l~~L~~L~ 137 (445)
...+.++|..|.++...+.++..+++||+|||++|.|+.+-|++|.+++.|.+|-+.+ |.|+......|+++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3456666666666655555566666666666666666666666666666666555554 556644444566666666666
Q ss_pred ccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccc
Q 042446 138 LGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNS 190 (445)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 190 (445)
+..|++.-.....|..+++|..|.+.+|.+.......+..+..++.+.+..|.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 66666553444456666666666666666553333355555555555555544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=185.26 Aligned_cols=265 Identities=26% Similarity=0.289 Sum_probs=188.6
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEee
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSL 186 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 186 (445)
..-..|+++++.++ .+|..+. ++|+.|++.+|.++ .+|. ..++|++|++++|.+. .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 45678899999888 6777664 47899999998887 4554 2578899999998887 34432 467888888
Q ss_pred cccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc
Q 042446 187 SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG 266 (445)
Q Consensus 187 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (445)
.+|.+. .+|.. ..+|+.|++++|.++ .+|.. .++|+.|++++|.+. .+|.. +..|+.|.+++|.+++
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS 336 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC----cccccccccccCcccc
Confidence 888877 34442 256888888888887 55543 367888888888887 45542 4568888888888774
Q ss_pred cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC
Q 042446 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346 (445)
Q Consensus 267 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 346 (445)
+|.. ..+|+.|++++|.++.. +.. .++|+.|++++|++...+ .. ..+|+.|++++|.++ .+
T Consensus 337 -LP~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~LP-------~l---~~~L~~LdLs~N~Lt-~L 397 (788)
T PRK15387 337 -LPTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTSLP-------AL---PSGLKELIVSGNRLT-SL 397 (788)
T ss_pred -cccc---ccccceEecCCCccCCC-CCC---CcccceehhhccccccCc-------cc---ccccceEEecCCccc-CC
Confidence 4432 24788888888888743 221 356778888888776532 11 246888888888877 44
Q ss_pred ChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccc
Q 042446 347 PHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTL 423 (445)
Q Consensus 347 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 423 (445)
|.. +++|+.|++++|.++ .+|.. ..+|+.|++++|++. .+|..+..+++|+.|+|++|++++..+..+
T Consensus 398 P~l----~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 398 PVL----PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCc----ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 432 247888888888887 45543 346777888888887 678888888888888888888887766655
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-20 Score=184.14 Aligned_cols=261 Identities=24% Similarity=0.287 Sum_probs=111.1
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
..|+++.+.++ .+|..+. .+|+.|++.+|+++ .+|. ..++|++|++++|+++ .+|.. .++|+.|++++|
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence 34555555544 3444332 24555555555554 2332 1244555555555544 22321 234455555555
Q ss_pred cCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCc
Q 042446 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS 245 (445)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 245 (445)
.+. .+|.. ..+|+.|++++|.+. .+|. ..++|+.|++++|.+. .+|... ..|+.|++++|.+. .+|.
T Consensus 273 ~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L~-~LP~ 339 (788)
T PRK15387 273 PLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLPT 339 (788)
T ss_pred chh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCCCc---ccccccccccCccc-cccc
Confidence 444 22221 133445555555444 2222 1234555555555544 223211 23444445555443 2332
Q ss_pred ccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccccc
Q 042446 246 CLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINS 325 (445)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 325 (445)
. +.+|+.|++++|.+++ +|.. .++|+.|++++|.+.. ++.. ..+|+.|++++|.+...+.
T Consensus 340 l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~-------- 399 (788)
T PRK15387 340 L----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPV-------- 399 (788)
T ss_pred c----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCC--------
Confidence 1 2345555555555442 2221 1244445555554442 1211 1345555555554443210
Q ss_pred ccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChh
Q 042446 326 LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQE 398 (445)
Q Consensus 326 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 398 (445)
..++|+.|++++|.++ .+|.. +.+|+.|++++|+++ .+|..+..+++|+.|++++|++.+..+..
T Consensus 400 --l~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 400 --LPSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred --cccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 0134555555555544 23321 124445555555554 34444555555555555555554443333
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-23 Score=180.12 Aligned_cols=251 Identities=22% Similarity=0.204 Sum_probs=165.6
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccC-CcCcccCCccccCCCCCCEEec
Q 042446 84 FLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQ-NKLVGSIPFEFVFLYKLKGLSL 162 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l 162 (445)
....++|..|+|+...+.+|+.+++|+.|++++|+|+.+-|.+|.++++|..|-+.+ |+++......|+++..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 457899999999978888999999999999999999999999999999988777666 8998555567999999999999
Q ss_pred ccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCc------------ccCCccCcCCCCCc
Q 042446 163 HKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS------------GKIPPSICNLSFLV 230 (445)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~------------~~~~~~l~~l~~L~ 230 (445)
.-|++.....+.+..+++|..|.+.+|.+...--..|..+..++++.+..|.+- ...+..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 999999888889999999999999999888433347888899999998877632 11111111111111
Q ss_pred EEEccCCc-------------------------CCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECcc
Q 042446 231 NFSVSQNQ-------------------------IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIAN 285 (445)
Q Consensus 231 ~L~l~~~~-------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (445)
-..+.+.+ ..+..|...+..+++|++|++++|+++..-+.+|.....++.|.|.+
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 11111111 12233333333455555555555555554455555555555555555
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCC
Q 042446 286 NSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRN 340 (445)
Q Consensus 286 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 340 (445)
|++.......|.++..|+.|++++|+++..... ++.....|.+|++-.|
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~------aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG------AFQTLFSLSTLNLLSN 356 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecc------cccccceeeeeehccC
Confidence 555444444455555555555555555543222 3334444555555443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=173.93 Aligned_cols=247 Identities=25% Similarity=0.354 Sum_probs=156.0
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEee
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSL 186 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 186 (445)
.+...|+++++.++ .+|..+. +.|+.|++++|.++ .+|..+. .+|++|++++|.+. .+|..+ .++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence 45667788777777 4565443 56788888888777 4555443 47888888877776 445433 246777788
Q ss_pred cccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc
Q 042446 187 SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG 266 (445)
Q Consensus 187 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (445)
++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCcccc
Confidence 777776 4555443 46777888777776 5565443 46777788777776 455433 3467777777777763
Q ss_pred cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC
Q 042446 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346 (445)
Q Consensus 267 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 346 (445)
+|..+ .++|+.|++++|.++. .+..+. ++|+.|++++|++...+ ..+ .++|+.|++++|.++ .+
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP-------~~l--p~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLP-------ETL--PPTITTLDVSRNALT-NL 382 (754)
T ss_pred -CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCC-------hhh--cCCcCEEECCCCcCC-CC
Confidence 34333 2567777777777664 333332 57777777777765422 112 246777777777776 45
Q ss_pred ChhhhhccccCcEEEcccCcccccCCcccc----CccCCCeeeCccCcce
Q 042446 347 PHSITNLSSQLQVLFLGFNQLYGSIPSGIG----NLVNLYLLAMEQNQFI 392 (445)
Q Consensus 347 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~n~~~ 392 (445)
|..+. .+|+.|++++|+++ .+|..+. ..+.+..+++.+|.+.
T Consensus 383 P~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 PENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 55433 25777777777776 4554433 2366777777777665
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-18 Score=172.33 Aligned_cols=247 Identities=23% Similarity=0.358 Sum_probs=165.1
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEc
Q 042446 131 SRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAI 210 (445)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 210 (445)
.+...|+++++.++ .+|..+. +.|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 45678888888777 5665543 47888888888887 4554443 57888888888877 4555443 47888888
Q ss_pred cCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcc
Q 042446 211 GVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSG 290 (445)
Q Consensus 211 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (445)
++|.+. .+|..+. .+|+.|++++|.+. .+|..+ +++|+.|++++|.+++ +|..+. ++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence 888887 6666553 46888888888776 566544 3578888888887774 443332 367778888887763
Q ss_pred cCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCccccc
Q 042446 291 KFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGS 370 (445)
Q Consensus 291 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 370 (445)
. +..+ .++|+.|++++|.+...+ ..+ +++|+.|++++|+++ .+|..+ +++|++|++++|.++ .
T Consensus 319 L-P~~l--~~sL~~L~Ls~N~Lt~LP-------~~l--~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~ 381 (754)
T PRK15370 319 L-PETL--PPGLKTLEAGENALTSLP-------ASL--PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-N 381 (754)
T ss_pred C-Cccc--cccceeccccCCccccCC-------hhh--cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-C
Confidence 2 3222 257778888877765532 122 257788888887776 455433 237788888888777 4
Q ss_pred CCccccCccCCCeeeCccCcceecCChhh----hCCCCCCeEEccCCccc
Q 042446 371 IPSGIGNLVNLYLLAMEQNQFIGTIPQEM----GKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 371 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~L~~L~l~~n~i~ 416 (445)
+|..+. .+|+.|++++|++. .+|..+ ...+.+..+++.+|++.
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 555443 35777777777776 455433 33466777788777776
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-20 Score=172.75 Aligned_cols=282 Identities=20% Similarity=0.270 Sum_probs=146.1
Q ss_pred EEccCCcCc-ccCCccccCCCCCCEEecccccCCC----CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEc
Q 042446 136 LSLGQNKLV-GSIPFEFVFLYKLKGLSLHKNNLTG----GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAI 210 (445)
Q Consensus 136 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 210 (445)
|++..+.++ ......+..+.+|+.++++++.+.. .++..+...+.+++++++++.+.+ .+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~----------- 70 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL----------- 70 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH-----------
Confidence 445555544 2233334455566667666666532 123334444555555555554431 00000
Q ss_pred cCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCC---CCccEEEccCCcCcc----cCcccCcCC-CCCCEEE
Q 042446 211 GVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNF---PNLKFFQIDQNFFTG----SIPVSLSNA-SKLEVIQ 282 (445)
Q Consensus 211 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~----~~~~~l~~~-~~L~~L~ 282 (445)
..++..+..+++|+.|++++|.+.+..+..+.. + ++|++|++++|.+.+ .+...+..+ ++|+.|+
T Consensus 71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLES-LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHH-HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 011222333445555555554443222222211 1 235555555555542 112233444 6666667
Q ss_pred CccCcCccc----CcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChh----hhhcc
Q 042446 283 IANNSFSGK----FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHS----ITNLS 354 (445)
Q Consensus 283 l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~~ 354 (445)
+++|.+++. ....+..+++|++|++++|.+.+.... .+...+..+++|++|++++|.+.+..... +...+
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR--ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH--HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 666666521 223345556677777777666541110 12233445567777777777665332222 22232
Q ss_pred ccCcEEEcccCcccccCCcccc-----CccCCCeeeCccCccee----cCChhhhCCCCCCeEEccCCccccc----ccc
Q 042446 355 SQLQVLFLGFNQLYGSIPSGIG-----NLVNLYLLAMEQNQFIG----TIPQEMGKLLNLQGLDFGGNHFSGK----IPS 421 (445)
Q Consensus 355 ~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~----~~~ 421 (445)
+|++|++++|.+++.....+. ..+.|++|++++|.++. .+...+..+++|+.+++++|++++. ...
T Consensus 222 -~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 222 -SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred -CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 677777777776642222221 13678888888887752 2344556667888888888888754 334
Q ss_pred cccCC-CCCCeEEccCCcc
Q 042446 422 TLGNL-SSLSEIVLSNNNL 439 (445)
Q Consensus 422 ~l~~l-~~L~~l~l~~n~~ 439 (445)
.+... +.|++++|.+|++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 301 SLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhhcCCchhhcccCCCCC
Confidence 44445 6888888888764
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-20 Score=173.10 Aligned_cols=281 Identities=21% Similarity=0.214 Sum_probs=172.1
Q ss_pred EEECCCCcCC-CCCCccCcCCCCCCEEEccCCcCccc----CCccccCCCCCCEEecccccCCC------CCCccCCCCC
Q 042446 111 ALFLANNSLV-GKIPANLSYCSRLTVLSLGQNKLVGS----IPFEFVFLYKLKGLSLHKNNLTG------GISPFLGNLT 179 (445)
Q Consensus 111 ~L~l~~~~i~-~~~p~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~l~~~~ 179 (445)
.|++.++.+. ......+..+.+|++|+++++.++.. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777776 34555667778899999999988532 45556678889999999887662 1112233444
Q ss_pred CcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCC----CCcccccCC-CCc
Q 042446 180 FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGS----LPSCLGLNF-PNL 254 (445)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~-~~L 254 (445)
+|+.|++++|.+....+..+..+.. . ++|++|++++|.+.+. +...+.. + ++|
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~-~~~~L 139 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKD-LPPAL 139 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHh-CCCCc
Confidence 5555555555443222222222211 1 2255555555544321 1111222 3 566
Q ss_pred cEEEccCCcCcc----cCcccCcCCCCCCEEECccCcCcccC----cccccCCCCCCEEEccCCcCCCCCCCCCcccccc
Q 042446 255 KFFQIDQNFFTG----SIPVSLSNASKLEVIQIANNSFSGKF----SVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326 (445)
Q Consensus 255 ~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 326 (445)
++|++++|.+++ .+...+..+++|++|++++|.+.+.. ...+..+++|+.|++++|.+.+.... .+...+
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--~l~~~~ 217 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS--ALAETL 217 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH--HHHHHh
Confidence 677777666652 22334556677888888888776422 22345567888888888877543221 234456
Q ss_pred cCCCCCcEEEccCCcceecCChhhhhc----cccCcEEEcccCcccc----cCCccccCccCCCeeeCccCcceec----
Q 042446 327 ANCSKLRVLSFGRNQFRGVLPHSITNL----SSQLQVLFLGFNQLYG----SIPSGIGNLVNLYLLAMEQNQFIGT---- 394 (445)
Q Consensus 327 ~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~---- 394 (445)
..+++|++|++++|.+++.....+... .+.|++|++++|.+++ .+...+..+++|+.+++++|.+...
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 678889999999888775433333332 1489999999998862 2334455668899999999988844
Q ss_pred CChhhhCC-CCCCeEEccCCcc
Q 042446 395 IPQEMGKL-LNLQGLDFGGNHF 415 (445)
Q Consensus 395 ~~~~~~~~-~~L~~L~l~~n~i 415 (445)
....+... +.|+++++.+|++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 298 LAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhhcCCchhhcccCCCCC
Confidence 44455555 7899999888763
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-19 Score=138.45 Aligned_cols=161 Identities=32% Similarity=0.522 Sum_probs=96.7
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
.+++.+.+++|.++ .+|+.++.+.+|++|++.+|+++ ++|.+++.+++|+.|++.-|.+. .+|.+|+.+|.|+.|++
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 45555666666664 45666666666666666666665 56666666666666666655555 56666666666666666
Q ss_pred cCCcCcc-cCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcc
Q 042446 139 GQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG 217 (445)
Q Consensus 139 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 217 (445)
.+|.+.. .+|..|..+..|+.|++++|.+. .+|..++++.+|+.|.+..|.+- .+|..++.+..|++|++.+|.++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence 6665542 24555555566666666666555 45555666666666666666555 45556666666666666666665
Q ss_pred cCCccCcC
Q 042446 218 KIPPSICN 225 (445)
Q Consensus 218 ~~~~~l~~ 225 (445)
.+|..+++
T Consensus 187 vlppel~~ 194 (264)
T KOG0617|consen 187 VLPPELAN 194 (264)
T ss_pred ecChhhhh
Confidence 55555444
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-18 Score=135.32 Aligned_cols=158 Identities=29% Similarity=0.455 Sum_probs=116.3
Q ss_pred cccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 042446 78 HIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKL 157 (445)
Q Consensus 78 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (445)
++..+.+++.|.+++|.++ ..|..+..+.+|++|++.+|+++ .+|..+..+++|+.|+++-|++. ..|.+|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 4556777888888888887 66667888888888888888888 77888888888888888888776 778888888888
Q ss_pred CEEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccC
Q 042446 158 KGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQ 236 (445)
Q Consensus 158 ~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 236 (445)
+.|++.+|++.. .+|..|..+..|+.|.+++|.+. .+|..++++++|+.|.+..|.+- .+|..++.+.+|++|++.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 888888877653 45555555666666667666665 56666666666666666666665 5666666666666666666
Q ss_pred CcCC
Q 042446 237 NQIH 240 (445)
Q Consensus 237 ~~~~ 240 (445)
|++.
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 6554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=129.00 Aligned_cols=150 Identities=31% Similarity=0.475 Sum_probs=121.2
Q ss_pred cChhhHHHHHHHHHhccCCCCCCCCCCCCCCCC----cceeeeEeCCCC----CcEEEEEcCCCCCcccccccccCCCCC
Q 042446 14 FEEGDRAALQAFKSMIAHDPQRILNSWNDSRHF----CEWDGVTCGRRH----RRVIALDLMSKALSGSLSPHIGNLSFL 85 (445)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~~~~----c~~~~~~~~~~~----~~v~~l~l~~~~~~~~~~~~l~~l~~L 85 (445)
....+..++.++++... ++.. ..|..+ .| |.|.|+.|.... ..|+.++|+++.+.+.+|..+..+++|
T Consensus 369 t~~~~~~aL~~~k~~~~-~~~~--~~W~g~-~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L 444 (623)
T PLN03150 369 TLLEEVSALQTLKSSLG-LPLR--FGWNGD-PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL 444 (623)
T ss_pred cCchHHHHHHHHHHhcC-Cccc--CCCCCC-CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence 34567889999999875 3332 378643 33 279999996321 258899999999999999999999999
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCC-CCCCEEeccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFL-YKLKGLSLHK 164 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~ 164 (445)
+.|+|++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+... .++..+++.+
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 999999999998899889999999999999999998899999999999999999999988888877653 4566777777
Q ss_pred ccC
Q 042446 165 NNL 167 (445)
Q Consensus 165 ~~~ 167 (445)
|..
T Consensus 525 N~~ 527 (623)
T PLN03150 525 NAG 527 (623)
T ss_pred Ccc
Confidence 653
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-13 Score=120.79 Aligned_cols=239 Identities=19% Similarity=0.229 Sum_probs=134.7
Q ss_pred cCCCCCCcceEeecccccccc----cCcccCCCCCCCEEEccCC---CCcccCC-------ccCcCCCCCcEEEccCCcC
Q 042446 174 FLGNLTFLELVSLSYNSFEGN----IPDSLGQLKELKSLAIGVN---NLSGKIP-------PSICNLSFLVNFSVSQNQI 239 (445)
Q Consensus 174 ~l~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n---~~~~~~~-------~~l~~l~~L~~L~l~~~~~ 239 (445)
.+..+..++.+++++|.+... +...+.+.++|+..++++- .....+| +.+..+++|+.++++.|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345667888888888887642 3345566778888887652 1222333 2334556788888888876
Q ss_pred CCCCCccc---ccCCCCccEEEccCCcCcccCc-------------ccCcCCCCCCEEECccCcCcccCc----ccccCC
Q 042446 240 HGSLPSCL---GLNFPNLKFFQIDQNFFTGSIP-------------VSLSNASKLEVIQIANNSFSGKFS----VNFGGM 299 (445)
Q Consensus 240 ~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~ 299 (445)
....+..+ ...+..|++|.+.+|.+...-. .-...-+.|+++..+.|++.+... ..|...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 54333322 2236677777777777652111 122344667777777776654322 234455
Q ss_pred CCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC----ChhhhhccccCcEEEcccCcccccCCccc
Q 042446 300 KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL----PHSITNLSSQLQVLFLGFNQLYGSIPSGI 375 (445)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 375 (445)
+.|+.+.++.|.+...... -+...+..|+.|+.|++.+|.++... ...+..++ +|++|++++|.+.......+
T Consensus 185 ~~leevr~~qN~I~~eG~~--al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVT--ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred cccceEEEecccccCchhH--HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeecccccccccccHHHH
Confidence 6777777777766543321 23445666777777777777665332 22233344 56666666666543222221
Q ss_pred -----cCccCCCeeeCccCccee----cCChhhhCCCCCCeEEccCCcc
Q 042446 376 -----GNLVNLYLLAMEQNQFIG----TIPQEMGKLLNLQGLDFGGNHF 415 (445)
Q Consensus 376 -----~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i 415 (445)
...|+|+.+.+.+|.++. .+..++...+.|+.|+|++|++
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 224566666666666542 1223444556666666666666
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-13 Score=118.94 Aligned_cols=238 Identities=18% Similarity=0.246 Sum_probs=116.0
Q ss_pred cCCCCCCCEEEccCCCCcc----cCCccCcCCCCCcEEEccCCcC---CCCCCccc------ccCCCCccEEEccCCcCc
Q 042446 199 LGQLKELKSLAIGVNNLSG----KIPPSICNLSFLVNFSVSQNQI---HGSLPSCL------GLNFPNLKFFQIDQNFFT 265 (445)
Q Consensus 199 l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~---~~~~~~~~------~~~~~~L~~L~l~~~~~~ 265 (445)
+..+..++++++++|.+.. .+...+.+.++|+..+++.--. ...+|..+ ...+|+|++++|++|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3445566666666666542 2233344445555555544311 11222211 112456666666666655
Q ss_pred ccCcc----cCcCCCCCCEEECccCcCcccCc-------------ccccCCCCCCEEEccCCcCCCCCCCCCcccccccC
Q 042446 266 GSIPV----SLSNASKLEVIQIANNSFSGKFS-------------VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLAN 328 (445)
Q Consensus 266 ~~~~~----~l~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 328 (445)
...+. .+.++..|+.|.|.+|.+....- ...+.-+.|+.+...+|++.+.... .+...+..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~--~~A~~~~~ 183 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT--ALAEAFQS 183 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH--HHHHHHHh
Confidence 33222 23455666666666665532111 1123445666666666665544332 23334455
Q ss_pred CCCCcEEEccCCcceec----CChhhhhccccCcEEEcccCccccc----CCccccCccCCCeeeCccCcceecCChh--
Q 042446 329 CSKLRVLSFGRNQFRGV----LPHSITNLSSQLQVLFLGFNQLYGS----IPSGIGNLVNLYLLAMEQNQFIGTIPQE-- 398 (445)
Q Consensus 329 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~-- 398 (445)
++.|+.+.+++|.+... +...+...+ +|+.||+++|.++.. +...++.++.|+.+++++|.+...-...
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 56666666666655322 112233333 666666666665522 2233455556666666666554322211
Q ss_pred --h-hCCCCCCeEEccCCccccc----ccccccCCCCCCeEEccCCcc
Q 042446 399 --M-GKLLNLQGLDFGGNHFSGK----IPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 399 --~-~~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~l~l~~n~~ 439 (445)
+ ...|+|+.+.+.+|.|+-. +..++...|.|+.|+|++|.+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1 1245666666666665421 223344456666666666665
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-12 Score=109.66 Aligned_cols=138 Identities=28% Similarity=0.296 Sum_probs=95.4
Q ss_pred CcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccC
Q 042446 292 FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSI 371 (445)
Q Consensus 292 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 371 (445)
........+.|+++++++|.++.+ -.+..-.|+++.|++++|.++. + ..+..++ +|+.||+++|.++ ..
T Consensus 276 ~~~~~dTWq~LtelDLS~N~I~~i-------DESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~-~L~~LDLS~N~Ls-~~ 344 (490)
T KOG1259|consen 276 ALVSADTWQELTELDLSGNLITQI-------DESVKLAPKLRRLILSQNRIRT-V-QNLAELP-QLQLLDLSGNLLA-EC 344 (490)
T ss_pred eEEecchHhhhhhccccccchhhh-------hhhhhhccceeEEeccccceee-e-hhhhhcc-cceEeecccchhH-hh
Confidence 334445566778888888877653 2356667788888888888762 2 2355565 7888888888876 33
Q ss_pred CccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccccc-ccccCCCCCCeEEccCCcceec
Q 042446 372 PSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP-STLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 372 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
..+-..+.+++.|.+.+|.+. ....++.+-+|..||+++|+|..... ..++++|.|+.+.+.+|++.+.
T Consensus 345 ~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 345 VGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 334445677888888888764 23456677788888888888874432 4677888888888888888763
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-12 Score=114.87 Aligned_cols=189 Identities=19% Similarity=0.210 Sum_probs=81.1
Q ss_pred CCCCCCEEEccCCcCcccCC--ccccCCCCCCEEecccccCCC--CCCccCCCCCCcceEeecccccccccCcccCCCCC
Q 042446 129 YCSRLTVLSLGQNKLVGSIP--FEFVFLYKLKGLSLHKNNLTG--GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKE 204 (445)
Q Consensus 129 ~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 204 (445)
++.+|+.+.+.++.+. ..+ .....|++++.|++++|-+.. .+......+|+|+.|+++.|.+.
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~------------ 185 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS------------ 185 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc------------
Confidence 4556666666665553 222 234455556666665554331 11112233445555555554433
Q ss_pred CCEEEccCCCCcccCCccC-cCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEEC
Q 042446 205 LKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQI 283 (445)
Q Consensus 205 L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (445)
....... ..+++|+.|.++.|.++..-...+...+|+|+.|++.+|............+..|+.|+|
T Consensus 186 ------------~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 186 ------------NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred ------------CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 1111111 123445555555554442222222223555555555555311111122233344555555
Q ss_pred ccCcCccc-CcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcc
Q 042446 284 ANNSFSGK-FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQF 342 (445)
Q Consensus 284 ~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 342 (445)
++|.+.+. .....+.+|.|+.|+++.+.+.++....-+...-...+++|+.|++..|++
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 55544321 122344555555555555555443322222222234455555555555555
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.3e-11 Score=112.40 Aligned_cols=176 Identities=32% Similarity=0.448 Sum_probs=84.2
Q ss_pred CCccEEEccCCcCcccCcccCcCCC-CCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCC
Q 042446 252 PNLKFFQIDQNFFTGSIPVSLSNAS-KLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCS 330 (445)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 330 (445)
+.++.+.+.++.++ .++......+ +|+.|++++|.+. ..+..+..+++|+.|+++.|++.... ......+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~-------~~~~~~~ 186 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLP-------KLLSNLS 186 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhh-------hhhhhhh
Confidence 33444444444444 2333333332 4555555555443 12233445555555555555554421 1222445
Q ss_pred CCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEc
Q 042446 331 KLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDF 410 (445)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 410 (445)
.|+.|++++|+++ .+|....... .|+++.+++|... ..+..+.....+..+.+.+|++. ..+..+..+++++.|++
T Consensus 187 ~L~~L~ls~N~i~-~l~~~~~~~~-~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 187 NLNNLDLSGNKIS-DLPPEIELLS-ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDL 262 (394)
T ss_pred hhhheeccCCccc-cCchhhhhhh-hhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecc
Confidence 5555555555554 3333322221 4555666555322 23444555555555555555554 33445555555666666
Q ss_pred cCCcccccccccccCCCCCCeEEccCCcceec
Q 042446 411 GGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 411 ~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
++|.++.. +. +..+.+++.|++++|.++..
T Consensus 263 s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 263 SNNQISSI-SS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccccc-cc-ccccCccCEEeccCcccccc
Confidence 66666522 22 55555666666666655543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-11 Score=123.01 Aligned_cols=84 Identities=26% Similarity=0.315 Sum_probs=36.7
Q ss_pred CcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCC
Q 042446 127 LSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELK 206 (445)
Q Consensus 127 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 206 (445)
|..++.|++||+++|.-.+.+|..++.+.+||+|+++++.+. .+|..+.++.+|.+|++..+.....++.....+.+|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 344444444444444333344444444444444444444444 4444444444444444444433222233333344444
Q ss_pred EEEcc
Q 042446 207 SLAIG 211 (445)
Q Consensus 207 ~L~l~ 211 (445)
+|.+.
T Consensus 646 ~L~l~ 650 (889)
T KOG4658|consen 646 VLRLP 650 (889)
T ss_pred EEEee
Confidence 44443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=111.36 Aligned_cols=155 Identities=32% Similarity=0.479 Sum_probs=79.2
Q ss_pred CcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEc
Q 042446 180 FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQI 259 (445)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 259 (445)
+|+.|++++|.+. .++..++.+++|+.|+++.|++. .++......+.|+.|++++|.+. .+|..... ...|+++.+
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDL 216 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhh
Confidence 4444444444444 23333444455555555555544 33333334445555555555544 34333221 334555555
Q ss_pred cCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccC
Q 042446 260 DQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGR 339 (445)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 339 (445)
.+|.+. ..+..+.++.++..+.+.+|++.. .+..+..++++++|++++|.+.... .+....+++.|++++
T Consensus 217 ~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~--------~~~~~~~l~~L~~s~ 286 (394)
T COG4886 217 SNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSIS--------SLGSLTNLRELDLSG 286 (394)
T ss_pred cCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccccccccc--------cccccCccCEEeccC
Confidence 555322 234445556666666666665542 2445566666777777776665532 255566677777777
Q ss_pred CcceecCCh
Q 042446 340 NQFRGVLPH 348 (445)
Q Consensus 340 ~~~~~~~~~ 348 (445)
+.+....+.
T Consensus 287 n~~~~~~~~ 295 (394)
T COG4886 287 NSLSNALPL 295 (394)
T ss_pred ccccccchh
Confidence 666544443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.6e-12 Score=112.57 Aligned_cols=135 Identities=22% Similarity=0.266 Sum_probs=57.3
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccc-cCCccccC
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYG-SIPSGIGN 377 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~ 377 (445)
+++|+.|.++.|.++.. .+...+..+|+|+.|.+..|... .+...-...+..|++|+|++|++-. ........
T Consensus 196 l~~lK~L~l~~CGls~k-----~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWK-----DVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred hhhhheEEeccCCCCHH-----HHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCccccccccccccc
Confidence 44555555555554421 12223344555555555555211 0000011111245555555555331 11122344
Q ss_pred ccCCCeeeCccCcceec-CChh-----hhCCCCCCeEEccCCccccccc--ccccCCCCCCeEEccCCcce
Q 042446 378 LVNLYLLAMEQNQFIGT-IPQE-----MGKLLNLQGLDFGGNHFSGKIP--STLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 378 ~~~L~~L~l~~n~~~~~-~~~~-----~~~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~l~l~~n~~~ 440 (445)
++.|+.|+++.|.+... .|.+ ....++|++|++..|+|. .++ ..+..+++|+.+.+.+|.++
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 55555555555554421 1111 233455666666666554 211 22334455555555555543
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-11 Score=103.59 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=78.0
Q ss_pred CCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhc
Q 042446 274 NASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL 353 (445)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 353 (445)
....|+++++++|.|+.+ .....-.|+++.|+++.|.+..+. .+..+++|+.|++++|.++ .+..+-..+
T Consensus 282 TWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--------nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KL 351 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--------NLAELPQLQLLDLSGNLLA-ECVGWHLKL 351 (490)
T ss_pred hHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--------hhhhcccceEeecccchhH-hhhhhHhhh
Confidence 344566667777666522 333444566677777776664422 3556667777777777665 333332333
Q ss_pred cccCcEEEcccCcccccCCccccCccCCCeeeCccCcceec-CChhhhCCCCCCeEEccCCccc
Q 042446 354 SSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGT-IPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 354 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
- ++++|.++.|.+.. -+++..+.+|..|++++|++... ....++++|.|+.+.+.+|++.
T Consensus 352 G-NIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 352 G-NIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred c-CEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 3 66777777776642 34566666777777777766522 1245667777777777777766
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-12 Score=117.59 Aligned_cols=194 Identities=21% Similarity=0.317 Sum_probs=147.5
Q ss_pred CCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEE
Q 042446 227 SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLI 306 (445)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 306 (445)
..-...+++.|++. ++|..+.. +-.|+.+.++.|.+. .+|..+.++..|.+++++.|+++ ..+..++.++ |+.|.
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred cchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 34456788888887 88877765 778888889888887 67888888999999999999886 5566666655 78888
Q ss_pred ccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeC
Q 042446 307 LQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAM 386 (445)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 386 (445)
+++|++.. ++..++..+.|..|+.+.|.+. .+|..+..+. +|+.|.++.|.+. .+|..++. -.|..||+
T Consensus 150 ~sNNkl~~-------lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-slr~l~vrRn~l~-~lp~El~~-LpLi~lDf 218 (722)
T KOG0532|consen 150 VSNNKLTS-------LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-SLRDLNVRRNHLE-DLPEELCS-LPLIRLDF 218 (722)
T ss_pred EecCcccc-------CCcccccchhHHHhhhhhhhhh-hchHHhhhHH-HHHHHHHhhhhhh-hCCHHHhC-Cceeeeec
Confidence 88888876 3445667788888888888887 6777777777 7888888888876 67777774 45888888
Q ss_pred ccCcceecCChhhhCCCCCCeEEccCCcccccccccccC---CCCCCeEEccCCc
Q 042446 387 EQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGN---LSSLSEIVLSNNN 438 (445)
Q Consensus 387 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~---l~~L~~l~l~~n~ 438 (445)
+.|++. .+|-+|..++.|+.|-|.+|++. .-|..+.. .--.++|++.-|+
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 888888 88888888888888888888887 44433322 2244666666664
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.5e-11 Score=120.60 Aligned_cols=254 Identities=20% Similarity=0.182 Sum_probs=152.6
Q ss_pred CCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc--CcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcc
Q 042446 105 RLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK--LVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLE 182 (445)
Q Consensus 105 ~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 182 (445)
.....+...+.++.+. .++... .+++|++|-+..|. +....+..|..++.|++|++++|.-.+.+|..++.+-+|+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3456677777777665 344433 34579888888885 4423344478899999999999887779999999999999
Q ss_pred eEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC--CCCCcccccCCCCccEEEcc
Q 042446 183 LVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH--GSLPSCLGLNFPNLKFFQID 260 (445)
Q Consensus 183 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~ 260 (445)
+|+++++.+. .+|..+++++.|.+|++..+......+.....+++|++|.+...... ......+. .+.+|+.+...
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~-~Le~L~~ls~~ 676 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELE-NLEHLENLSIT 676 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhh-cccchhhheee
Confidence 9999999998 78999999999999999987765566777777899999988665421 11122222 25555555554
Q ss_pred CCcCcccCcccCcCCCCCC----EEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccccccc-CCCCCcEE
Q 042446 261 QNFFTGSIPVSLSNASKLE----VIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLA-NCSKLRVL 335 (445)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L 335 (445)
.... .+...+..++.|. .+.+.++.. ......+..+.+|+.|.+.++.+.+.......- .... .++++..+
T Consensus 677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~-~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEES-LIVLLCFPNLSKV 752 (889)
T ss_pred cchh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccc-cchhhhHHHHHHH
Confidence 3332 0111122222222 222222221 233445667778888888887775432211000 0001 13344444
Q ss_pred EccCCcceecCChhhhhccccCcEEEcccCccc
Q 042446 336 SFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLY 368 (445)
Q Consensus 336 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 368 (445)
.+.++... ..+.+ ...+++|+.|.+..|...
T Consensus 753 ~~~~~~~~-r~l~~-~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 753 SILNCHML-RDLTW-LLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred Hhhccccc-cccch-hhccCcccEEEEeccccc
Confidence 44443222 11111 123347777777777644
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=7e-10 Score=91.05 Aligned_cols=105 Identities=23% Similarity=0.338 Sum_probs=21.8
Q ss_pred CCCEEECccCcCcccCccccc-CCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccc
Q 042446 277 KLEVIQIANNSFSGKFSVNFG-GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS 355 (445)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 355 (445)
++++|++++|.|+.+ +.++ .+.+|+.|++++|.+...+ .+..+++|++|++++|+++ .+...+....+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--------~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--------GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--T--------T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--------CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 344455555544322 1222 2344455555555444322 2334445555555555544 22222221112
Q ss_pred cCcEEEcccCccccc-CCccccCccCCCeeeCccCcce
Q 042446 356 QLQVLFLGFNQLYGS-IPSGIGNLVNLYLLAMEQNQFI 392 (445)
Q Consensus 356 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~ 392 (445)
+|++|++++|++.+. .-..+..+++|+.|++.+|++.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 455555555544321 0122334445555555555444
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.7e-12 Score=116.12 Aligned_cols=167 Identities=29% Similarity=0.390 Sum_probs=76.8
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKL 143 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~ 143 (445)
.|++.|.+. .+|.....|-.|+.+.++.|.+. .+|..++.+..|.+++++.|++. .+|..++.++ |+.|.+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 334444443 34444444444444444444444 44444445555555555555444 4444444432 44444555444
Q ss_pred cccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccC
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI 223 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 223 (445)
+ .+|..++....|..|+.+.|.+. .+|..+..+.+|+.|.+..|++. .+|..+. --.|..||++.|++. .+|-.|
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhh
Confidence 4 44444444444445555544444 33344444444555544444444 2333333 223444555555544 445455
Q ss_pred cCCCCCcEEEccCCcC
Q 042446 224 CNLSFLVNFSVSQNQI 239 (445)
Q Consensus 224 ~~l~~L~~L~l~~~~~ 239 (445)
.++++|++|-+.+|.+
T Consensus 231 r~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhheeeeeccCCC
Confidence 5555555555555444
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-10 Score=93.63 Aligned_cols=125 Identities=32% Similarity=0.339 Sum_probs=40.9
Q ss_pred cCCCCCCEEECCCCcccccCCcccc-CCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccc-cCCCCC
Q 042446 80 GNLSFLREINLMDNTIQGEIPPEFG-RLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEF-VFLYKL 157 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L 157 (445)
.+..+++.|+|+++.|+. +. .++ .+.+|+.|++++|.|+. +. ++..+++|++|++++|+++ .+...+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 344457888888888763 32 344 46778888888888873 32 4667788888888888887 343334 357788
Q ss_pred CEEecccccCCCC-CCccCCCCCCcceEeecccccccccCc----ccCCCCCCCEEEc
Q 042446 158 KGLSLHKNNLTGG-ISPFLGNLTFLELVSLSYNSFEGNIPD----SLGQLKELKSLAI 210 (445)
Q Consensus 158 ~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l 210 (445)
++|++++|.+... ....+..+++|+.|++.+|.+... +. .+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 8888888877631 223455677777777777766521 11 2334555555544
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=109.58 Aligned_cols=110 Identities=30% Similarity=0.564 Sum_probs=95.2
Q ss_pred CCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEc
Q 042446 331 KLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDF 410 (445)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 410 (445)
.++.|+|++|.+.+.+|..+..+. +|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 378899999999888888888877 8999999999998888988999999999999999999889999999999999999
Q ss_pred cCCcccccccccccCC-CCCCeEEccCCccee
Q 042446 411 GGNHFSGKIPSTLGNL-SSLSEIVLSNNNLSG 441 (445)
Q Consensus 411 ~~n~i~~~~~~~l~~l-~~L~~l~l~~n~~~~ 441 (445)
++|.+++.+|..+... .++..+++.+|+...
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcccc
Confidence 9999998899887653 467788888887443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-09 Score=72.62 Aligned_cols=61 Identities=34% Similarity=0.500 Sum_probs=41.4
Q ss_pred cCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcc
Q 042446 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~ 439 (445)
|+|+.|++++|++....+..|..+++|+.|++++|.++...+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566677777766644445666777777777777777655556677777777777777764
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-11 Score=102.10 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=44.1
Q ss_pred CCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCc-CcccC-cccccCCCCCCEE
Q 042446 228 FLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNS-FSGKF-SVNFGGMKNLSHL 305 (445)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~-~~~l~~~~~L~~L 305 (445)
.|+++|++...++..-...+...|.+|+.|.+.|+.+.+.+...+.+..+|+.++++++. ++... ...+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666555432222222335566666666666655555555566666666666542 22211 1223455555555
Q ss_pred EccCCcCCC
Q 042446 306 ILQSSNLGS 314 (445)
Q Consensus 306 ~l~~~~~~~ 314 (445)
++++|.+..
T Consensus 266 NlsWc~l~~ 274 (419)
T KOG2120|consen 266 NLSWCFLFT 274 (419)
T ss_pred CchHhhccc
Confidence 555555433
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-09 Score=105.04 Aligned_cols=222 Identities=21% Similarity=0.239 Sum_probs=95.4
Q ss_pred CCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCE
Q 042446 201 QLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEV 280 (445)
Q Consensus 201 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (445)
.+.+|..+++.+|.+. .+...+..+++|++|++++|.|...-+-.. ++.|+.|++.+|.+.. ...+..++.|+.
T Consensus 93 ~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~---l~~L~~L~l~~N~i~~--~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGLST---LTLLKELNLSGNLISD--ISGLESLKSLKL 166 (414)
T ss_pred cccceeeeeccccchh-hcccchhhhhcchheeccccccccccchhh---ccchhhheeccCcchh--ccCCccchhhhc
Confidence 3344444444444443 222223344444444444444432111111 3335555555554442 122333555555
Q ss_pred EECccCcCcccCc-ccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcE
Q 042446 281 IQIANNSFSGKFS-VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQV 359 (445)
Q Consensus 281 L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 359 (445)
+++++|.+..... . ...+.+++.+.+.+|.+..+. .+..+..+..+++..|.++..-+....... .|++
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--------~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~-~L~~ 236 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--------GLDLLKKLVLLSLLDNKISKLEGLNELVML-HLRE 236 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--------chHHHHHHHHhhcccccceeccCcccchhH-HHHH
Confidence 5665555543332 1 344555555666655554422 223333344445555554422111111000 2556
Q ss_pred EEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccc---cccc-ccCCCCCCeEEcc
Q 042446 360 LFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK---IPST-LGNLSSLSEIVLS 435 (445)
Q Consensus 360 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~---~~~~-l~~l~~L~~l~l~ 435 (445)
+++++|.+. ..+.++..+..+..+++.+|.+.. ...+...+.+..+....+.+... .... ....+.++.+++.
T Consensus 237 l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (414)
T KOG0531|consen 237 LYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLE 313 (414)
T ss_pred HhcccCccc-cccccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccc
Confidence 666666654 222445555566666666655441 11223334444555555554311 1111 3344555555555
Q ss_pred CCccee
Q 042446 436 NNNLSG 441 (445)
Q Consensus 436 ~n~~~~ 441 (445)
+|++..
T Consensus 314 ~~~~~~ 319 (414)
T KOG0531|consen 314 LNPIRK 319 (414)
T ss_pred cCcccc
Confidence 555443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-08 Score=68.95 Aligned_cols=60 Identities=32% Similarity=0.420 Sum_probs=44.0
Q ss_pred cCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcc
Q 042446 356 QLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHF 415 (445)
Q Consensus 356 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i 415 (445)
+|++|++++|+++...+..+..+++|+.|++++|.+....+.+|..+++|+.|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 677777777777755455667777777788877777766667777778888888877764
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-09 Score=102.83 Aligned_cols=248 Identities=29% Similarity=0.299 Sum_probs=150.6
Q ss_pred cCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 042446 80 GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKG 159 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (445)
..+..++.++++.+.+. .....+..+.+|+.|++.+|.|. .+...+..+++|++|++++|.++... .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhh
Confidence 34566777778877776 33445777888888888888887 33333677888888888888886332 3556677888
Q ss_pred EecccccCCCCCCccCCCCCCcceEeecccccccccCcc-cCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCc
Q 042446 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDS-LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQ 238 (445)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 238 (445)
|++.+|.+... ..+..++.|+.+++++|.+...-. . ...+..++.+.+.+|.+. ....+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh--cccchHHHHHHHHhhccccc
Confidence 88888887732 334557888888888888774322 1 466777888888887775 22333344444455666665
Q ss_pred CCCCCCcccccCCC--CccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCC
Q 042446 239 IHGSLPSCLGLNFP--NLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGE 316 (445)
Q Consensus 239 ~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 316 (445)
+. .+..... .. .|+.+++.++.+.. .+..+..+.++..+++..+.+.... .+...+.+..+....+.+....
T Consensus 220 i~-~~~~l~~--~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 293 (414)
T KOG0531|consen 220 IS-KLEGLNE--LVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSE 293 (414)
T ss_pred ce-eccCccc--chhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchh
Confidence 54 2211111 22 27777777777662 2245666777777777777664322 2334445555555555543221
Q ss_pred CCCCcccccccCCCCCcEEEccCCccee
Q 042446 317 SDEMGFINSLANCSKLRVLSFGRNQFRG 344 (445)
Q Consensus 317 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 344 (445)
.. .-.......+.++.+.+..+....
T Consensus 294 ~~--~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 294 AI--SQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hh--hccccccccccccccccccCcccc
Confidence 11 001113455666666666665543
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-10 Score=98.42 Aligned_cols=183 Identities=17% Similarity=0.118 Sum_probs=115.5
Q ss_pred CCccEEEccCCcCcc-cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCC
Q 042446 252 PNLKFFQIDQNFFTG-SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCS 330 (445)
Q Consensus 252 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 330 (445)
+++++++++...++- .+..-++.|.+|+.|.+.++++.+.....+++-.+|+.|+++.+.--... +....+..|+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n----~~~ll~~scs 260 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN----ALQLLLSSCS 260 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh----HHHHHHHhhh
Confidence 358888888776653 22334567788888888888887777777777888888888876432211 2334567788
Q ss_pred CCcEEEccCCcceecCC-hhhhhccccCcEEEcccCcc--cc-cCCccccCccCCCeeeCccCccee-cCChhhhCCCCC
Q 042446 331 KLRVLSFGRNQFRGVLP-HSITNLSSQLQVLFLGFNQL--YG-SIPSGIGNLVNLYLLAMEQNQFIG-TIPQEMGKLLNL 405 (445)
Q Consensus 331 ~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~--~~-~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L 405 (445)
.|.+|+++.|....... ..+....++|..|+++++.- .. .+..-...||+|.+|||++|...+ .....+..++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 88888888776543332 22334445788888887742 11 122223467888888888875432 233456677888
Q ss_pred CeEEccCCccc-ccccccccCCCCCCeEEccCCc
Q 042446 406 QGLDFGGNHFS-GKIPSTLGNLSSLSEIVLSNNN 438 (445)
Q Consensus 406 ~~L~l~~n~i~-~~~~~~l~~l~~L~~l~l~~n~ 438 (445)
+.|.++.|.-. -..--.+...|+|.+|++.|+-
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 88888887632 1111234566788888877663
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-09 Score=90.46 Aligned_cols=139 Identities=17% Similarity=0.106 Sum_probs=68.5
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCCh-----hhhhccccCcEEEcccCccccc---
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPH-----SITNLSSQLQVLFLGFNQLYGS--- 370 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~--- 370 (445)
-|.|+.+....|++...+...+ ...+.....|+++.+.+|.+.-+... .++.. .+|+.||+.+|.++-.
T Consensus 156 kp~Le~vicgrNRlengs~~~~--a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELS--AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred CCCceEEEeccchhccCcHHHH--HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHH
Confidence 3556666666655544332211 11122234566666666655422111 11222 3666777766666521
Q ss_pred -CCccccCccCCCeeeCccCcceecCChh----h--hCCCCCCeEEccCCccccccccc-----c--cCCCCCCeEEccC
Q 042446 371 -IPSGIGNLVNLYLLAMEQNQFIGTIPQE----M--GKLLNLQGLDFGGNHFSGKIPST-----L--GNLSSLSEIVLSN 436 (445)
Q Consensus 371 -~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~--~~~~~L~~L~l~~n~i~~~~~~~-----l--~~l~~L~~l~l~~ 436 (445)
+...++.++.|+.|.+.+|-+...-... | ...|+|..|-..+|.+.+.+... + .++|-|..+.+.|
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 2233455566777777777655322211 1 13566677777776654332211 1 2355666666666
Q ss_pred Ccce
Q 042446 437 NNLS 440 (445)
Q Consensus 437 n~~~ 440 (445)
|++.
T Consensus 313 Nr~~ 316 (388)
T COG5238 313 NRIK 316 (388)
T ss_pred Ccch
Confidence 6654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.8e-09 Score=88.65 Aligned_cols=232 Identities=17% Similarity=0.111 Sum_probs=127.9
Q ss_pred cccccCCCCCCEEECCCCccccc--CCccccCCCCCCEEECCCCcCCC--CCCccCcCCCCCCEEEccCCcCcccCCccc
Q 042446 76 SPHIGNLSFLREINLMDNTIQGE--IPPEFGRLFRLEALFLANNSLVG--KIPANLSYCSRLTVLSLGQNKLVGSIPFEF 151 (445)
Q Consensus 76 ~~~l~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~--~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 151 (445)
+..++..+-++.|-+.++.+..+ ....-..+..++.+++.+|.|++ .+...+..+|.|++|+++.|++...+. .+
T Consensus 38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~l 116 (418)
T KOG2982|consen 38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SL 116 (418)
T ss_pred eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cC
Confidence 33444444555666666655422 11112346778888888888773 334455678888888888887763322 22
Q ss_pred -cCCCCCCEEecccccCCC-CCCccCCCCCCcceEeeccccccccc--CcccCCC-CCCCEEEccCCCCcc--cCCccCc
Q 042446 152 -VFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNI--PDSLGQL-KELKSLAIGVNNLSG--KIPPSIC 224 (445)
Q Consensus 152 -~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~l-~~L~~L~l~~n~~~~--~~~~~l~ 224 (445)
....+|++|.+.++.+.. .....+..+|.+++|.++.|.+.... ....... +.++++++.+|.... .....-.
T Consensus 117 p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 117 PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 356788888888876653 33344667788888888877544211 1112222 345555555543321 1111113
Q ss_pred CCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccC-cccCcCCCCCCEEECccCcCcccCcc------ccc
Q 042446 225 NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSI-PVSLSNASKLEVIQIANNSFSGKFSV------NFG 297 (445)
Q Consensus 225 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~------~l~ 297 (445)
.++++..+.+..|++...-...-...+|.+..|.+..+++.+.. .+.+.+++.|..|.++++.+.+.... .++
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 34666667676666653333333333566666666666665421 24456666677777776666432211 235
Q ss_pred CCCCCCEEEcc
Q 042446 298 GMKNLSHLILQ 308 (445)
Q Consensus 298 ~~~~L~~L~l~ 308 (445)
.+++++.|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 55666655433
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.9e-08 Score=82.91 Aligned_cols=203 Identities=12% Similarity=0.135 Sum_probs=101.8
Q ss_pred CCCCcEEEccCCcCCC--CCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCc-ccccCCCCC
Q 042446 226 LSFLVNFSVSQNQIHG--SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFS-VNFGGMKNL 302 (445)
Q Consensus 226 l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L 302 (445)
++.++.+++.+|.++. ++.. +...+|.|+.|+++.|.+.+.+...-....+|++|-+.+..+..... ..+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4667777777776652 2222 22337777777777776654332211345567777777666543222 234556677
Q ss_pred CEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceec-CChhhhhccccCcEEEcccCccccc-CCccccCccC
Q 042446 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGV-LPHSITNLSSQLQVLFLGFNQLYGS-IPSGIGNLVN 380 (445)
Q Consensus 303 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 380 (445)
++|+++.|.+......+-... ..-+.++++++..|..... -...+....+++..+-+..|++... .-++...+|.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e---~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIE---DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPS 225 (418)
T ss_pred hhhhhccchhhhhcccccccc---ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCc
Confidence 777777764332211110000 0112344444444432210 0111222334666666666655321 1223444556
Q ss_pred CCeeeCccCcceecCC--hhhhCCCCCCeEEccCCcccccccc------cccCCCCCCeEE
Q 042446 381 LYLLAMEQNQFIGTIP--QEMGKLLNLQGLDFGGNHFSGKIPS------TLGNLSSLSEIV 433 (445)
Q Consensus 381 L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~------~l~~l~~L~~l~ 433 (445)
+..|+|..+++. .+. ..+..++.|..|.++++++.+.+-. -+.++++++.|+
T Consensus 226 ~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 226 LSCLNLGANNID-SWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred chhhhhcccccc-cHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 666777666655 222 3456677777777777776543221 134566666544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.6e-08 Score=83.25 Aligned_cols=86 Identities=24% Similarity=0.327 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCCccc----ccccccCCCCCCEEECCCCccc---ccC-------CccccCCCCCCEEECCCCcCCCCCC
Q 042446 59 RRVIALDLMSKALSGS----LSPHIGNLSFLREINLMDNTIQ---GEI-------PPEFGRLFRLEALFLANNSLVGKIP 124 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~---~~~-------~~~~~~~~~L~~L~l~~~~i~~~~p 124 (445)
..++.+++++|.+... +...++.-++|+..+++..... ..+ ..++-+|++|+..++++|-+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4567777777776532 2334455566666666654221 112 2234566777777777766654444
Q ss_pred c----cCcCCCCCCEEEccCCcCc
Q 042446 125 A----NLSYCSRLTVLSLGQNKLV 144 (445)
Q Consensus 125 ~----~l~~l~~L~~L~l~~~~~~ 144 (445)
. .+++-..|.+|.+++|.+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC
Confidence 2 2344556666666666443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.6e-09 Score=92.48 Aligned_cols=35 Identities=23% Similarity=0.070 Sum_probs=16.9
Q ss_pred CCCEEEccCCcCcccCC--ccccCCCCCCEEeccccc
Q 042446 132 RLTVLSLGQNKLVGSIP--FEFVFLYKLKGLSLHKNN 166 (445)
Q Consensus 132 ~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~ 166 (445)
.|+.|.+.+++-.+..+ ..-..++++++|.+.++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK 175 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce
Confidence 45666666654332211 112345666666555553
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1e-08 Score=98.45 Aligned_cols=179 Identities=23% Similarity=0.187 Sum_probs=77.5
Q ss_pred CccccCCCCCCEEECCCCcCCCCCCccCcCC-CCCCEEEccCCcCc---ccCCcc---ccC---CCCCCEEecccccCCC
Q 042446 100 PPEFGRLFRLEALFLANNSLVGKIPANLSYC-SRLTVLSLGQNKLV---GSIPFE---FVF---LYKLKGLSLHKNNLTG 169 (445)
Q Consensus 100 ~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l-~~L~~L~l~~~~~~---~~~~~~---~~~---l~~L~~L~l~~~~~~~ 169 (445)
|-.+..+..|++|.++++.+.. ..++..+ .+|+.|.-.+ ... ..+... +.+ --.|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 5567778888888888887762 2222221 3445443222 111 000000 000 113444555555444
Q ss_pred CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCccccc
Q 042446 170 GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGL 249 (445)
Q Consensus 170 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 249 (445)
.+..++.-++.|+.|++++|++... +.+..++.|++||++.|.+. .+|..-..-..|..|.+++|.+. ++.. +.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL~g-ie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TLRG-IEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hhhh-HHh
Confidence 3333444455555555555555421 24444555555555555554 33322222223555555555443 1111 111
Q ss_pred CCCCccEEEccCCcCcccC-cccCcCCCCCCEEECccCcC
Q 042446 250 NFPNLKFFQIDQNFFTGSI-PVSLSNASKLEVIQIANNSF 288 (445)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~ 288 (445)
+.+|+.|++++|-+.+.- ...+..+..|+.|.|.||.+
T Consensus 253 -LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 253 -LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 444555555554433210 11122333444555555544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.5e-08 Score=93.61 Aligned_cols=126 Identities=25% Similarity=0.244 Sum_probs=62.0
Q ss_pred CCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccC
Q 042446 278 LEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQL 357 (445)
Q Consensus 278 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 357 (445)
|...+.+.|.+. .....+.-++.++.|+++.|++... ..+..|++|++|+|++|.++ .+|.--.... +|
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--------~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L 234 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--------DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KL 234 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--------HHHHhcccccccccccchhc-cccccchhhh-hh
Confidence 444455555443 2223334445555666666655442 14555666666666666655 3332211122 46
Q ss_pred cEEEcccCcccccCCccccCccCCCeeeCccCcceecC-ChhhhCCCCCCeEEccCCccc
Q 042446 358 QVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTI-PQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 358 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~ 416 (445)
+.|.+++|.++. --++.++.+|+.||+++|-+.+-- -.-+..+..|+.|+|.+|++-
T Consensus 235 ~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666666666542 124555666666666666444110 112234455666666666553
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.1e-06 Score=52.78 Aligned_cols=40 Identities=50% Similarity=0.974 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHhccCCCCCCCCCCCCC--CCCcceeeeEeC
Q 042446 16 EGDRAALQAFKSMIAHDPQRILNSWNDS--RHFCEWDGVTCG 55 (445)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~~~w~~~--~~~c~~~~~~~~ 55 (445)
+.+.++|.+|+.++..+|...+..|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5789999999999998888889999998 799999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.4e-08 Score=88.97 Aligned_cols=281 Identities=17% Similarity=0.102 Sum_probs=165.0
Q ss_pred CCCCEEecccccCCC--CCCccCCCCCCcceEeeccccc-ccccCccc-CCCCCCCEEEccCC-CCcccCCc-cCcCCCC
Q 042446 155 YKLKGLSLHKNNLTG--GISPFLGNLTFLELVSLSYNSF-EGNIPDSL-GQLKELKSLAIGVN-NLSGKIPP-SICNLSF 228 (445)
Q Consensus 155 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~l-~~l~~L~~L~l~~n-~~~~~~~~-~l~~l~~ 228 (445)
.-|+.|.+.++.-.+ .+-....+++++++|.+.++.. +......+ ...++|+.+++..+ .+++..-+ ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 347888888875332 2223345788888888877752 22111112 35677888888763 34433333 2235678
Q ss_pred CcEEEccCCc-CCCCCCcccccCCCCccEEEccCCcCcc--cCcccCcCCCCCCEEECccCc-CcccCccc-ccCCCCCC
Q 042446 229 LVNFSVSQNQ-IHGSLPSCLGLNFPNLKFFQIDQNFFTG--SIPVSLSNASKLEVIQIANNS-FSGKFSVN-FGGMKNLS 303 (445)
Q Consensus 229 L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~-l~~~~~L~ 303 (445)
|+++++++|. +.+.-...+..++..++.+...||.=.+ .+...=..++.+.++++..|. +++..... -..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888873 4443444555566667777666653111 011111345556667766663 33332211 23466778
Q ss_pred EEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCc-ceecCChhhhhccccCcEEEcccCcc-c-ccCCccccCccC
Q 042446 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQ-FRGVLPHSITNLSSQLQVLFLGFNQL-Y-GSIPSGIGNLVN 380 (445)
Q Consensus 304 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-~-~~~~~~~~~~~~ 380 (445)
.+..+++...+.. .+...-.++++|+.+.+..++ +++.-...+....+.|+.+++..+.. + +.+...-.+++.
T Consensus 298 ~l~~s~~t~~~d~----~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 298 VLCYSSCTDITDE----VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hhcccCCCCCchH----HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 8887776543321 122233567888888888875 44333334444444788888887752 2 223333457888
Q ss_pred CCeeeCccCcceecC-----ChhhhCCCCCCeEEccCCcc-cccccccccCCCCCCeEEccCCcc
Q 042446 381 LYLLAMEQNQFIGTI-----PQEMGKLLNLQGLDFGGNHF-SGKIPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 381 L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~i-~~~~~~~l~~l~~L~~l~l~~n~~ 439 (445)
|+.+.++.|...... ...-.....|+.+.+++|+. ++...+.+..+++|+.+++-+|+-
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 888888888665332 22334566788888888884 445567778888999988887763
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.3e-06 Score=51.97 Aligned_cols=37 Identities=41% Similarity=0.677 Sum_probs=18.6
Q ss_pred CCCeEEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 404 NLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 404 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555 334445555555555555555543
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.1e-07 Score=71.01 Aligned_cols=105 Identities=18% Similarity=0.273 Sum_probs=50.1
Q ss_pred CCEEECccCcCccc--CcccccCCCCCCEEEccCCcCCCCCCCCCcccccc-cCCCCCcEEEccCCcceecCChhhhhcc
Q 042446 278 LEVIQIANNSFSGK--FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL-ANCSKLRVLSFGRNQFRGVLPHSITNLS 354 (445)
Q Consensus 278 L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 354 (445)
+..++|+.|++... .+..+....+|+..++++|.+.. ++..+ .+++.++.|++++|.+. .+|..+..++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-------fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~ 100 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-------FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMP 100 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-------CCHHHhhccchhhhhhcchhhhh-hchHHHhhhH
Confidence 34455555544311 11223334445555555555544 22222 23445555555555555 4555555554
Q ss_pred ccCcEEEcccCcccccCCccccCccCCCeeeCccCcce
Q 042446 355 SQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI 392 (445)
Q Consensus 355 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 392 (445)
.|+.|+++.|++. ..|..+..+.++-.|+..+|.+.
T Consensus 101 -aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 101 -ALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred -HhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 5555555555554 33444444555555555555544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.3e-07 Score=89.44 Aligned_cols=110 Identities=17% Similarity=0.238 Sum_probs=49.2
Q ss_pred CCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcc-cCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccC
Q 042446 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSG-KFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLAN 328 (445)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 328 (445)
.+|+|..||+++++++.. ..++++++|+.|.+.+-.+.. .....+-++++|+.|++|...............+.-..
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 355555555555554432 345555555555555444332 12223444555555555554433322111112223334
Q ss_pred CCCCcEEEccCCcceecCChhhhhccccCcEEE
Q 042446 329 CSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLF 361 (445)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 361 (445)
+|+|+.|+.++..+.+...+.+....++|+.+.
T Consensus 249 LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred CccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 556666666655554444443333333444433
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.2e-05 Score=71.83 Aligned_cols=138 Identities=18% Similarity=0.163 Sum_probs=85.9
Q ss_pred CcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccC-cCcccCcccccCCCC
Q 042446 223 ICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN-SFSGKFSVNFGGMKN 301 (445)
Q Consensus 223 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~ 301 (445)
+..+.+++.|++++|.+. .+|. -+++|++|.+++|.--..+|..+ .++|++|.+++| .+. .++ ++
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cc
Confidence 345688999999999776 6672 25679999998865433455444 358999999988 443 222 46
Q ss_pred CCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcce--ecCChhhhhccccCcEEEcccCcccccCCccccCcc
Q 042446 302 LSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR--GVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLV 379 (445)
Q Consensus 302 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 379 (445)
|+.|.+..+...... .+| ++|+.|.+..+... ..++ ..+|++|++|++++|... ..|..+. .
T Consensus 114 Le~L~L~~n~~~~L~----~LP------ssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP--~ 177 (426)
T PRK15386 114 VRSLEIKGSATDSIK----NVP------NGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP--E 177 (426)
T ss_pred cceEEeCCCCCcccc----cCc------chHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc--c
Confidence 778887665443211 122 34677777543211 0111 135568999999888765 3444433 5
Q ss_pred CCCeeeCccCc
Q 042446 380 NLYLLAMEQNQ 390 (445)
Q Consensus 380 ~L~~L~l~~n~ 390 (445)
+|+.|.++.+.
T Consensus 178 SLk~L~ls~n~ 188 (426)
T PRK15386 178 SLQSITLHIEQ 188 (426)
T ss_pred cCcEEEecccc
Confidence 78888887653
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.3e-05 Score=64.21 Aligned_cols=105 Identities=29% Similarity=0.227 Sum_probs=62.0
Q ss_pred CCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCC-CCccCCCCCCcceE
Q 042446 106 LFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGG-ISPFLGNLTFLELV 184 (445)
Q Consensus 106 ~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L 184 (445)
..+...+++++|.+. .-..|..++.|.+|.+++|+++...|.--..+++|++|.+.+|++... ...-+..+|+|++|
T Consensus 41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345566777777665 223455667777777777777754444334456677777777765521 11235567777777
Q ss_pred eeccccccccc---CcccCCCCCCCEEEccC
Q 042446 185 SLSYNSFEGNI---PDSLGQLKELKSLAIGV 212 (445)
Q Consensus 185 ~l~~~~~~~~~---~~~l~~l~~L~~L~l~~ 212 (445)
.+-+|.++..- ...+.++++|+.||+.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777665211 01344566666666654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.1e-05 Score=69.54 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=90.4
Q ss_pred cCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCC-cCcccCcccCcCCCC
Q 042446 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQN-FFTGSIPVSLSNASK 277 (445)
Q Consensus 199 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~ 277 (445)
+..+.+++.|++++|.++ .+|. --.+|++|.+++|.....+|..+ +++|++|++.+| .+. .+| +.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cc
Confidence 445688999999999887 6662 12469999999876555666644 568999999998 443 344 35
Q ss_pred CCEEECccCcCcccCcccccCC-CCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhcccc
Q 042446 278 LEVIQIANNSFSGKFSVNFGGM-KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQ 356 (445)
Q Consensus 278 L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 356 (445)
|+.|++.++.... +..+ ++|+.|.+.+++..... ..+.. -.++|++|++++|... ..|. .+|.+
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~----~lp~~--LPsSLk~L~Is~c~~i-~LP~---~LP~S 178 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQA----RIDNL--ISPSLKTLSLTGCSNI-ILPE---KLPES 178 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheecccccccccc----ccccc--cCCcccEEEecCCCcc-cCcc---ccccc
Confidence 7888887655431 2333 46788887553311100 11111 1267999999998765 3343 24459
Q ss_pred CcEEEcccCc
Q 042446 357 LQVLFLGFNQ 366 (445)
Q Consensus 357 L~~L~l~~~~ 366 (445)
|+.|.++.+.
T Consensus 179 Lk~L~ls~n~ 188 (426)
T PRK15386 179 LQSITLHIEQ 188 (426)
T ss_pred CcEEEecccc
Confidence 9999998763
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.2e-05 Score=48.29 Aligned_cols=36 Identities=36% Similarity=0.551 Sum_probs=19.1
Q ss_pred CCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 380 NLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 380 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
+|+.|++++|++. .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 44444555566666666666555
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=2e-06 Score=65.72 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=45.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
.+++.+++++|.+....+....+++.++.|++++|.+. ++|..+..++.|+.|++++|.+. ..|..+..+.++-+|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 45555666666555322233344455566666666665 55555555666666666666555 44444444555555555
Q ss_pred cCCcCc
Q 042446 139 GQNKLV 144 (445)
Q Consensus 139 ~~~~~~ 144 (445)
.+|...
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 555444
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=1.3e-05 Score=80.64 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=119.1
Q ss_pred CCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcc-------------cC--cCCCCCCEEECccCcC-
Q 042446 225 NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPV-------------SL--SNASKLEVIQIANNSF- 288 (445)
Q Consensus 225 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------~l--~~~~~L~~L~l~~~~~- 288 (445)
..-++++.++.+............ ...|+++.+.+-......-. .+ ..-.+|++|+++|...
T Consensus 58 ~~f~ltki~l~~~~~~~~~~~~l~--~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~ 135 (699)
T KOG3665|consen 58 RKFNLTKIDLKNVTLQHQTLEMLR--KQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELF 135 (699)
T ss_pred hhheeEEeeccceecchhHHHHHh--hccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchh
Confidence 334677777777655433333332 23377777766432211000 00 1225788888888643
Q ss_pred cccCccccc-CCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcc
Q 042446 289 SGKFSVNFG-GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQL 367 (445)
Q Consensus 289 ~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 367 (445)
....+..++ .+|+|+.|.+.+-.+... ++......+|+|..||+++..++.. .++..+. +|+.|.+.+-.+
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~~~~~-----dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk-nLq~L~mrnLe~ 207 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQFDND-----DFSQLCASFPNLRSLDISGTNISNL--SGISRLK-NLQVLSMRNLEF 207 (699)
T ss_pred hccHHHHHhhhCcccceEEecCceecch-----hHHHHhhccCccceeecCCCCccCc--HHHhccc-cHHHHhccCCCC
Confidence 333333333 478889988888766553 2455667888889999988887632 5566665 888888888777
Q ss_pred cc-cCCccccCccCCCeeeCccCcceecC--C----hhhhCCCCCCeEEccCCcccccccccc-cCCCCCCeEE
Q 042446 368 YG-SIPSGIGNLVNLYLLAMEQNQFIGTI--P----QEMGKLLNLQGLDFGGNHFSGKIPSTL-GNLSSLSEIV 433 (445)
Q Consensus 368 ~~-~~~~~~~~~~~L~~L~l~~n~~~~~~--~----~~~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~l~ 433 (445)
.. ..-..+.++++|+.||++.......- . ++-..+|.|+.||.+++++.+.+.+.+ ..=|+|+.+-
T Consensus 208 e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 208 ESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred CchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 53 12234567888888888876544211 1 233457888888888888775544333 2335555543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0001 Score=60.55 Aligned_cols=124 Identities=21% Similarity=0.193 Sum_probs=81.3
Q ss_pred CEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCC
Q 042446 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLY 382 (445)
Q Consensus 303 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 382 (445)
+++++.+.++..++. .-....+...+++++|.+... ..+..++ .|.+|.+++|.|+..-|.--..+|+|.
T Consensus 22 ~e~~LR~lkip~ien-------lg~~~d~~d~iDLtdNdl~~l--~~lp~l~-rL~tLll~nNrIt~I~p~L~~~~p~l~ 91 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-------LGATLDQFDAIDLTDNDLRKL--DNLPHLP-RLHTLLLNNNRITRIDPDLDTFLPNLK 91 (233)
T ss_pred cccccccccccchhh-------ccccccccceecccccchhhc--ccCCCcc-ccceEEecCCcceeeccchhhhccccc
Confidence 455555555544321 112234577888888877522 1233344 899999999998866565555678899
Q ss_pred eeeCccCcceecC-ChhhhCCCCCCeEEccCCccccccc---ccccCCCCCCeEEccC
Q 042446 383 LLAMEQNQFIGTI-PQEMGKLLNLQGLDFGGNHFSGKIP---STLGNLSSLSEIVLSN 436 (445)
Q Consensus 383 ~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~l~l~~ 436 (445)
.|.+.+|++.... ...+..||.|++|.+-+|+++..-- -.+..+|+|+.||..+
T Consensus 92 ~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 92 TLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 9999888776221 2346678899999999998874421 2456788888887654
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00077 Score=53.06 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=4.9
Q ss_pred CcCCCCCCEEEccC
Q 042446 127 LSYCSRLTVLSLGQ 140 (445)
Q Consensus 127 l~~l~~L~~L~l~~ 140 (445)
|.++.+|+.+.+.+
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 33444444444433
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00072 Score=53.22 Aligned_cols=106 Identities=22% Similarity=0.191 Sum_probs=55.7
Q ss_pred cccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 042446 78 HIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKL 157 (445)
Q Consensus 78 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (445)
.+.++++|+.+.+.. .+......+|..+.+|+.+.+..+ +.......+.+++.++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 456677888888875 455455667888888888888774 6545556677777888888865 3332334456667777
Q ss_pred CEEecccccCCCCCCccCCCCCCcceEeecc
Q 042446 158 KGLSLHKNNLTGGISPFLGNLTFLELVSLSY 188 (445)
Q Consensus 158 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 188 (445)
+.+.+..+ +.......+.++ +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 77777553 332333345554 666665543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=4.1e-05 Score=75.40 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=32.0
Q ss_pred ccCccCCCeeeCccCcceecC-ChhhhCCCC--------------CCeEEccCCcc-cccccccccC-CCCCCeEEccCC
Q 042446 375 IGNLVNLYLLAMEQNQFIGTI-PQEMGKLLN--------------LQGLDFGGNHF-SGKIPSTLGN-LSSLSEIVLSNN 437 (445)
Q Consensus 375 ~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~--------------L~~L~l~~n~i-~~~~~~~l~~-l~~L~~l~l~~n 437 (445)
+..++.++.+.+..+...... ...+.+|+. ++.|+++.|.. +...-..... +.+++.+++.++
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~ 437 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGC 437 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCc
Confidence 345666666666666532211 123333443 36666666653 3223333333 555666666665
Q ss_pred cc
Q 042446 438 NL 439 (445)
Q Consensus 438 ~~ 439 (445)
+.
T Consensus 438 ~~ 439 (482)
T KOG1947|consen 438 RV 439 (482)
T ss_pred cc
Confidence 53
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=3.8e-05 Score=75.61 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=34.4
Q ss_pred cCcEEEcccCcccccC-CccccCccC--------------CCeeeCccCcceecC-ChhhhC-CCCCCeEEccCCccc
Q 042446 356 QLQVLFLGFNQLYGSI-PSGIGNLVN--------------LYLLAMEQNQFIGTI-PQEMGK-LLNLQGLDFGGNHFS 416 (445)
Q Consensus 356 ~L~~L~l~~~~~~~~~-~~~~~~~~~--------------L~~L~l~~n~~~~~~-~~~~~~-~~~L~~L~l~~n~i~ 416 (445)
+++.+.+..+...... ...+..|+. ++.|+++.|...... -..... +.+++.+++.++...
T Consensus 363 ~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 363 KLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred CcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 6777777666533211 122333443 578888887654222 222222 677888888888744
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=3.9e-05 Score=66.07 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=71.5
Q ss_pred CCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCC--hhhhCCCCCC
Q 042446 329 CSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIP--QEMGKLLNLQ 406 (445)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~ 406 (445)
+.+.+.|++++|.+.+. .....++ .|++|.|+-|+|+.. ..+..|..|++|+|..|.+. .+. +.+.++|+|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp-~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMP-LLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcc-cceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 45678899999988632 2234455 899999999998742 44678889999999999887 333 4567889999
Q ss_pred eEEccCCccccccc-----ccccCCCCCCeEE
Q 042446 407 GLDFGGNHFSGKIP-----STLGNLSSLSEIV 433 (445)
Q Consensus 407 ~L~l~~n~i~~~~~-----~~l~~l~~L~~l~ 433 (445)
.|+|..|+-.+.-+ ..+..+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999988654433 2355678888764
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00048 Score=59.09 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=29.4
Q ss_pred CCCCCCEEECccC--cCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcce
Q 042446 274 NASKLEVIQIANN--SFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR 343 (445)
Q Consensus 274 ~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 343 (445)
.+++|++|.++.| .+...+......+|+|+++++++|++... +-...+..+.+|..|++.+|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-----stl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-----STLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-----cccchhhhhcchhhhhcccCCcc
Confidence 3445555555555 23222222223335555555555554431 11223444555566666655544
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=7.4e-05 Score=64.39 Aligned_cols=99 Identities=24% Similarity=0.289 Sum_probs=64.0
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCC--cccc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIP--SGIG 376 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~ 376 (445)
+.+.++|++.++.+.++. ...+++.|++|.|+-|+++.. ..+.... +|++|.|+.|.|.+ +. .-+.
T Consensus 18 l~~vkKLNcwg~~L~DIs--------ic~kMp~lEVLsLSvNkIssL--~pl~rCt-rLkElYLRkN~I~s-ldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--------ICEKMPLLEVLSLSVNKISSL--APLQRCT-RLKELYLRKNCIES-LDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHHH--------HHHhcccceeEEeeccccccc--hhHHHHH-HHHHHHHHhccccc-HHHHHHHh
Confidence 456677888888776642 456778888888888877632 2334444 78888888887753 21 2346
Q ss_pred CccCCCeeeCccCcceecCCh-----hhhCCCCCCeEE
Q 042446 377 NLVNLYLLAMEQNQFIGTIPQ-----EMGKLLNLQGLD 409 (445)
Q Consensus 377 ~~~~L~~L~l~~n~~~~~~~~-----~~~~~~~L~~L~ 409 (445)
++|+|+.|.|..|.-.+..+. .+..+|+|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 778888888887765544432 345566676664
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0014 Score=56.35 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=68.9
Q ss_pred ccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccC--cccccCCccccCccCCCeeeCccCcceec-CChhhhCC
Q 042446 326 LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFN--QLYGSIPSGIGNLVNLYLLAMEQNQFIGT-IPQEMGKL 402 (445)
Q Consensus 326 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~ 402 (445)
...+..|+.+++.+..++.. ..+-.++ +|++|.++.| .+++.+..-...+|+|+++++++|++... -...+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 34556677777777666521 1233344 8999999999 45544444455679999999999987621 11345567
Q ss_pred CCCCeEEccCCcccccc---cccccCCCCCCeEEc
Q 042446 403 LNLQGLDFGGNHFSGKI---PSTLGNLSSLSEIVL 434 (445)
Q Consensus 403 ~~L~~L~l~~n~i~~~~---~~~l~~l~~L~~l~l 434 (445)
.+|..|++.+|..+... ...|.-+++|++++-
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 78889999999876432 134555677777554
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.0021 Score=53.01 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=46.3
Q ss_pred cCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCC-hhh-hCCCCCCeEEccCCc-ccccccccccCCCCCCeE
Q 042446 356 QLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIP-QEM-GKLLNLQGLDFGGNH-FSGKIPSTLGNLSSLSEI 432 (445)
Q Consensus 356 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~-~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~l 432 (445)
.++.++-+++.|..+..+.+..+++++.|.+.+|.-.+... +-+ +-.++|+.|+|++|+ |++....++.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 45666666666655445555566666666666665432211 011 134567777777665 665555666666666666
Q ss_pred EccC
Q 042446 433 VLSN 436 (445)
Q Consensus 433 ~l~~ 436 (445)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6553
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.013 Score=29.81 Aligned_cols=18 Identities=44% Similarity=0.839 Sum_probs=9.1
Q ss_pred CCeEEccCCcccccccccc
Q 042446 405 LQGLDFGGNHFSGKIPSTL 423 (445)
Q Consensus 405 L~~L~l~~n~i~~~~~~~l 423 (445)
|+.|+|++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444434
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.00015 Score=69.92 Aligned_cols=189 Identities=17% Similarity=0.169 Sum_probs=115.3
Q ss_pred CCcEEEccCCcCCCCCCcccc---cCCCCccEEEccCCcCcccCc----ccCcCC-CCCCEEECccCcCcccC----ccc
Q 042446 228 FLVNFSVSQNQIHGSLPSCLG---LNFPNLKFFQIDQNFFTGSIP----VSLSNA-SKLEVIQIANNSFSGKF----SVN 295 (445)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~~~~~~----~~~ 295 (445)
.+.++.+.+|.+.......+. ...+.|..|++++|.+.+... ..+... ..+++|++..|.+++.. ...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 377888888877654333322 236788889999988874222 223333 56777888888776543 334
Q ss_pred ccCCCCCCEEEccCCcCCCCCCCCCccccccc----CCCCCcEEEccCCcceecCChh----hhhccccCcEEEcccCcc
Q 042446 296 FGGMKNLSHLILQSSNLGSGESDEMGFINSLA----NCSKLRVLSFGRNQFRGVLPHS----ITNLSSQLQVLFLGFNQL 367 (445)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~ 367 (445)
+.....++.++++.|.+..... ..+...+. ...++++|++.+|.++...... +......+.++++.+|.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~--~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGL--LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HhcccchhHHHHHhcccchhhh--HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 5567788888888887753211 12223333 3667888888888765322211 222332366688888876
Q ss_pred ccc----CCccccCc-cCCCeeeCccCcceec----CChhhhCCCCCCeEEccCCccccc
Q 042446 368 YGS----IPSGIGNL-VNLYLLAMEQNQFIGT----IPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 368 ~~~----~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
.+. ....+..+ +.++.+++..|+++.. +.+.+..++.++.+.+++|++.+.
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 532 22233444 5678888888887743 345556677888888888887644
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.024 Score=28.77 Aligned_cols=12 Identities=42% Similarity=0.276 Sum_probs=5.1
Q ss_pred CcEEEcccCccc
Q 042446 357 LQVLFLGFNQLY 368 (445)
Q Consensus 357 L~~L~l~~~~~~ 368 (445)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.00028 Score=68.06 Aligned_cols=209 Identities=19% Similarity=0.184 Sum_probs=131.9
Q ss_pred CCCEEEccCCCCcccC----CccCcCCCCCcEEEccCCcCCCCCCcccccCC----CCccEEEccCCcCccc----Cccc
Q 042446 204 ELKSLAIGVNNLSGKI----PPSICNLSFLVNFSVSQNQIHGSLPSCLGLNF----PNLKFFQIDQNFFTGS----IPVS 271 (445)
Q Consensus 204 ~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~----~~~~ 271 (445)
.+..+.+.+|.+.... ...+...+.|+.|++++|.+.+.-...+.... ..++.|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3777888888876433 34455678899999999988743322222212 3467778888877643 3455
Q ss_pred CcCCCCCCEEECccCcCccc----Cccccc----CCCCCCEEEccCCcCCCCCCCCCcccccccCCCC-CcEEEccCCcc
Q 042446 272 LSNASKLEVIQIANNSFSGK----FSVNFG----GMKNLSHLILQSSNLGSGESDEMGFINSLANCSK-LRVLSFGRNQF 342 (445)
Q Consensus 272 l~~~~~L~~L~l~~~~~~~~----~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~ 342 (445)
+.....++.+++..|.+... ....+. ...++++|++.++.++..... .+...+...+. +.++++.+|.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--LLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--HHHHHHhccchhhHHHHHHhcCc
Confidence 66688899999999877421 122233 467889999999988753332 22334455555 77799999887
Q ss_pred eecCChhhh----hccccCcEEEcccCcccccC----CccccCccCCCeeeCccCcceecCC----hhhhCCCCCCeEEc
Q 042446 343 RGVLPHSIT----NLSSQLQVLFLGFNQLYGSI----PSGIGNLVNLYLLAMEQNQFIGTIP----QEMGKLLNLQGLDF 410 (445)
Q Consensus 343 ~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l 410 (445)
-+.....+. .....++++++..|.+++.. ...+..++.++.+.+++|.+..... +.......+..+.+
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l 325 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVL 325 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhc
Confidence 644222222 22136789999999987543 3345667899999999998764322 22333445555666
Q ss_pred cCCc
Q 042446 411 GGNH 414 (445)
Q Consensus 411 ~~n~ 414 (445)
.++.
T Consensus 326 ~~~~ 329 (478)
T KOG4308|consen 326 GGTG 329 (478)
T ss_pred cccC
Confidence 5444
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.07 Score=25.08 Aligned_cols=12 Identities=50% Similarity=0.628 Sum_probs=4.2
Q ss_pred CCCeEEccCCcc
Q 042446 428 SLSEIVLSNNNL 439 (445)
Q Consensus 428 ~L~~l~l~~n~~ 439 (445)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.046 Score=28.37 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=8.1
Q ss_pred CCCCeEEccCCcccccc
Q 042446 403 LNLQGLDFGGNHFSGKI 419 (445)
Q Consensus 403 ~~L~~L~l~~n~i~~~~ 419 (445)
++|+.|+|++|+|++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45555666666555443
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.01 Score=50.25 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=56.5
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEE
Q 042446 58 HRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLS 137 (445)
Q Consensus 58 ~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~ 137 (445)
+++++.+|++.+.+.. .-..++.++.+..|+++.+.+. -.|..++....++.++...|+.. ..|.++...+++++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 3677777777776542 3334555666777777777665 56666666667777777777766 6677777777777777
Q ss_pred ccCCcCc
Q 042446 138 LGQNKLV 144 (445)
Q Consensus 138 l~~~~~~ 144 (445)
..++.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 7776654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.096 Score=43.57 Aligned_cols=33 Identities=24% Similarity=0.059 Sum_probs=17.1
Q ss_pred cCcEEEcccC-cccccCCccccCccCCCeeeCcc
Q 042446 356 QLQVLFLGFN-QLYGSIPSGIGNLVNLYLLAMEQ 388 (445)
Q Consensus 356 ~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~ 388 (445)
+|+.|++++| .||+..-.++..+++|+.|.+++
T Consensus 152 ~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 152 SLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred chheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 5555555555 25544444445555555555544
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=84.54 E-value=0.84 Score=24.00 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=8.8
Q ss_pred CCCCeEEccCCccc
Q 042446 403 LNLQGLDFGGNHFS 416 (445)
Q Consensus 403 ~~L~~L~l~~n~i~ 416 (445)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=84.54 E-value=0.84 Score=24.00 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=8.8
Q ss_pred CCCCeEEccCCccc
Q 042446 403 LNLQGLDFGGNHFS 416 (445)
Q Consensus 403 ~~L~~L~l~~n~i~ 416 (445)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.83 E-value=0.015 Score=49.24 Aligned_cols=86 Identities=17% Similarity=0.133 Sum_probs=50.3
Q ss_pred cccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 042446 78 HIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKL 157 (445)
Q Consensus 78 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (445)
.+..+...+.||++.+.+- .+..-++.+..|..|+++.+.+. ..|..+.....++.++...|... ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4555666677777766654 33344555555666666666665 55665555555555555555554 555556666666
Q ss_pred CEEeccccc
Q 042446 158 KGLSLHKNN 166 (445)
Q Consensus 158 ~~L~l~~~~ 166 (445)
+++++-++.
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 665555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 445 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 5e-38 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 6e-38 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-19 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 6e-11 | ||
| 4fmz_A | 347 | Crystal Structure Of An Internalin (Inlf) From List | 2e-10 | ||
| 1ds9_A | 198 | Solution Structure Of Chlamydomonas Outer Arm Dynei | 1e-05 | ||
| 1m9l_A | 199 | Relaxation-Based Refined Structure Of Chlamydomonas | 1e-05 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 1e-04 | ||
| 2z63_A | 570 | Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A | 1e-04 | ||
| 4g8a_A | 635 | Crystal Structure Of Human Tlr4 Polymorphic Variant | 4e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 198 | Back alignment and structure |
|
| >pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 199 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570 | Back alignment and structure |
|
| >pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 320 bits (822), Expect = e-102
Identities = 127/444 (28%), Positives = 201/444 (45%), Gaps = 32/444 (7%)
Query: 16 EGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALS--- 72
+ L +FK ++ + +L W+ +++ C +DGVTC R +V ++DL SK L+
Sbjct: 11 YREIHQLISFKDVL--PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGF 66
Query: 73 GSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPA--NLSYC 130
++S + +L+ L + L ++ I G + F L +L L+ NSL G + +L C
Sbjct: 67 SAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125
Query: 131 SRLTVLSLGQNKLVGSIPFEFVF-LYKLKGLSLHKNNLTGGISP---FLGNLTFLELVSL 186
S L L++ N L L L+ L L N+++G L+ +++
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185
Query: 187 SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSC 246
S N G++ + + L+ L + NN S I P + + S L + +S N++ G
Sbjct: 186 SGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRA 242
Query: 247 LGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG-MKNLSHL 305
+ LK I N F G IP L+ + +A N F+G+ G L+ L
Sbjct: 243 IS-TCTELKLLNISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 306 ILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLP-HSITNLSSQLQVLFLGF 364
L ++ G +CS L L+ N F G LP ++ + L+VL L F
Sbjct: 300 DLSGNHF-YGA-----VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG-LKVLDLSF 352
Query: 365 NQLYGSIPSGIGNL-VNLYLLAMEQNQFIGTIPQEMGK--LLNLQGLDFGGNHFSGKIPS 421
N+ G +P + NL +L L + N F G I + + LQ L N F+GKIP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 422 TLGNLSSLSEIVLSNNNLSGVIPS 445
TL N S L + LS N LSG IPS
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPS 436
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 299 bits (767), Expect = 5e-94
Identities = 122/389 (31%), Positives = 183/389 (47%), Gaps = 19/389 (4%)
Query: 64 LDLMSKALSGSLSPHI---GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLV 120
LDL + ++SG+ L+ + + N I G++ R LE L +++N+
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS 213
Query: 121 GKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTF 180
IP L CS L L + NKL G +LK L++ N G I P L
Sbjct: 214 TGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270
Query: 181 LELVSLSYNSFEGNIPDSL-GQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQI 239
L+ +SL+ N F G IPD L G L L + N+ G +PP + S L + ++S N
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNAS-KLEVIQIANNSFSGKFSVNFGG 298
G LP L LK + N F+G +P SL+N S L + +++N+FSG N
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 299 --MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQ 356
L L LQ++ +G+ +L+NCS+L L N G +P S+ +LS
Sbjct: 391 NPKNTLQELYLQNNGF-TGK-----IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK- 443
Query: 357 LQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416
L+ L L N L G IP + + L L ++ N G IP + NL + N +
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 417 GKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
G+IP +G L +L+ + LSNN+ SG IP+
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPA 532
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 272 bits (698), Expect = 5e-84
Identities = 116/384 (30%), Positives = 172/384 (44%), Gaps = 36/384 (9%)
Query: 64 LDLMSKALSGSLSPHIGN--LSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVG 121
LDL S SG + P++ + L+E+ L +N G+IPP L +L L+ N L G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 122 KIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL 181
IP++L S+L L L N L G IP E +++ L+ L L N+LTG I L N T L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 182 ELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG 241
+SLS N G IP +G+L+ L L + N+ SG IP + + L+ ++ N +G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKN 301
++P+ + + NF G V + N + A N + +
Sbjct: 553 TIPAAMFKQSGKIA-----ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS------ 601
Query: 302 LSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLF 361
L S + + G + N S + L
Sbjct: 602 ----------------------EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS-MMFLD 638
Query: 362 LGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPS 421
+ +N L G IP IG++ L++L + N G+IP E+G L L LD N G+IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 422 TLGNLSSLSEIVLSNNNLSGVIPS 445
+ L+ L+EI LSNNNLSG IP
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 7e-60
Identities = 91/314 (28%), Positives = 134/314 (42%), Gaps = 16/314 (5%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
L L LSG++ +G+LS LR++ L N ++GEIP E + LE L L N L G+I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL 183
P+ LS C+ L +SL N+L G IP L L L L N+ +G I LG+ L
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQN--QIHG 241
+ L+ N F G IP ++ + S I N ++GK I N + N + G
Sbjct: 543 LDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598
Query: 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKN 301
L I + G + N + + ++ N SG G M
Sbjct: 599 IRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 302 LSHLILQSSNLGSGESDEMGFI-NSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL 360
L L L N SG I + + + L +L N+ G +P +++ L+ L +
Sbjct: 658 LFILNL-GHNDISGS------IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM-LTEI 709
Query: 361 FLGFNQLYGSIPSG 374
L N L G IP
Sbjct: 710 DLSNNNLSGPIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 6e-26
Identities = 41/139 (29%), Positives = 55/139 (39%)
Query: 60 RVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSL 119
+ G S + LS N+ G P F + L ++ N L
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 120 VGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLT 179
G IP + L +L+LG N + GSIP E L L L L N L G I + LT
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 180 FLELVSLSYNSFEGNIPDS 198
L + LS N+ G IP+
Sbjct: 705 MLTEIDLSNNNLSGPIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 36/95 (37%), Positives = 50/95 (52%)
Query: 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNS 118
++ LD+ LSG + IG++ +L +NL N I G IP E G L L L L++N
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 119 LVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVF 153
L G+IP +S + LT + L N L G IP F
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 5e-73
Identities = 71/300 (23%), Positives = 122/300 (40%), Gaps = 14/300 (4%)
Query: 18 DRAALQAFKSMIAHDPQRILNSWNDSRHFCE--WDGVTCGRRHR--RVIALDLMSKALSG 73
D+ AL K + + L+SW + C W GV C + RV LDL L
Sbjct: 7 DKQALLQIKKDLGNPTT--LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 74 S--LSPHIGNLSFLREINLMD-NTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYC 130
+ + NL +L + + N + G IPP +L +L L++ + ++ G IP LS
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 131 SRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL-ELVSLSYN 189
L L N L G++P L L G++ N ++G I G+ + L +++S N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 190 SFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGL 249
G IP + L L + + N L G + +++N + L +G
Sbjct: 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG- 241
Query: 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQS 309
NL + N G++P L+ L + ++ N+ G+ G ++ +
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYAN 300
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 3e-62
Identities = 67/266 (25%), Positives = 110/266 (41%), Gaps = 16/266 (6%)
Query: 185 SLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG--KIPPSICNLSFLVNFSVS-QNQIHG 241
++ G + D+ Q + +L + NL IP S+ NL +L + N + G
Sbjct: 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91
Query: 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKN 301
+P + L + I +G+IP LS L + + N+ SG + + N
Sbjct: 92 PIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 302 LSHLILQSSNLGSGESDEMGFI-NSLANCSKL-RVLSFGRNQFRGVLPHSITNLSSQLQV 359
L + + + G I +S + SKL ++ RN+ G +P + NL+ L
Sbjct: 151 LVGITFDGNRI-------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAF 201
Query: 360 LFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKI 419
+ L N L G G+ N + + +N + ++G NL GLD N G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL 260
Query: 420 PSTLGNLSSLSEIVLSNNNLSGVIPS 445
P L L L + +S NNL G IP
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQ 286
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 3e-60
Identities = 80/325 (24%), Positives = 124/325 (38%), Gaps = 43/325 (13%)
Query: 122 KIPANLSYCSRL----TVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG--GISPFL 175
+I +L + L +G + Y++ L L NL I L
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 176 GNLTFLELVSLS-YNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSV 234
NL +L + + N+ G IP ++ +L +L L I N+SG IP + + LV
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 235 SQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKL-EVIQIANNSFSGKFS 293
S N + G+LP + + PNL D N +G+IP S + SKL + I+ N +GK
Sbjct: 133 SYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 294 VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL 353
F + L + RN G +
Sbjct: 192 PTFANLN-------------------------------LAFVDLSRNMLEGDASVLFGSD 220
Query: 354 SSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGN 413
+ Q + L N L + +G NL L + N+ GT+PQ + +L L L+ N
Sbjct: 221 KN-TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 414 HFSGKIPSTLGNLSSLSEIVLSNNN 438
+ G+IP GNL +NN
Sbjct: 279 NLCGEIP-QGGNLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-35
Identities = 54/185 (29%), Positives = 78/185 (42%), Gaps = 11/185 (5%)
Query: 267 SIPVSLSNASKL----EVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGF 322
I L N + L N ++ G +++L L NL
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL----PKPYPI 68
Query: 323 INSLANCSKLRVLSF-GRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNL 381
+SLAN L L G N G +P +I L+ QL L++ + G+IP + + L
Sbjct: 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 382 YLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSE-IVLSNNNLS 440
L N GT+P + L NL G+ F GN SG IP + G+ S L + +S N L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 441 GVIPS 445
G IP
Sbjct: 188 GKIPP 192
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 3e-66
Identities = 74/434 (17%), Positives = 130/434 (29%), Gaps = 44/434 (10%)
Query: 39 SWNDSRHFCEW---DGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTI 95
+WN ++ W GV+ RV L L SG + IG L+ L + L +
Sbjct: 59 NWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117
Query: 96 QG----EIPPEFGRLFRLEALFLANNSLVGKIPANLSY--CSRLTVLSLGQNKLVGSIPF 149
+ P E S L + + SI
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177
Query: 150 EFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLA 209
K + NN+T +S + LT L + + F + + +
Sbjct: 178 SSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE--- 233
Query: 210 IGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFT---- 265
NL L + V LP+ L P ++ + N
Sbjct: 234 --YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQ 290
Query: 266 ----GSIPVSLSNASKLEVIQIANNSF-SGKFSVNFGGMKNLSHLILQSSNLGSGESDEM 320
K+++I I N+ + + MK L L + L
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL-------E 343
Query: 321 GFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPS--GIGNL 378
G + + + KL L+ NQ +P + + Q++ L N+L IP+ ++
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSV 401
Query: 379 VNLYLLAMEQNQF-------IGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSE 431
+ + N+ + K +N+ ++ N S S LS
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461
Query: 432 IVLSNNNLSGVIPS 445
I L N L+ + +
Sbjct: 462 INLMGNMLTEIPKN 475
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 202 bits (517), Expect = 6e-59
Identities = 65/427 (15%), Positives = 142/427 (33%), Gaps = 54/427 (12%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGE-------------------IPPEFG 104
+ +S ++ +S + L+ LR+ + ++ E ++
Sbjct: 188 IGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246
Query: 105 RLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLV--------GSIPFEFVFLYK 156
L L + + N + K+P L + ++++ N+ + + K
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Query: 157 LKGLSLHKNNLTGG-ISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNL 215
++ + + NNL + L + L ++ YN EG + G +L SL + N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQI 365
Query: 216 SGKIPPSIC-NLSFLVNFSVSQNQIHGSLPSCLGL-NFPNLKFFQIDQNFFTG------- 266
+ IP + C + N S + N++ +P+ + + N
Sbjct: 366 TE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423
Query: 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFIN-S 325
+ + + I ++NN S F LS + L + L + + N +
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483
Query: 326 LANCSKLRVLSFGRNQFRGVLPHSITNLS-SQLQVLFLGFNQLYGSIPSGIGNLVNLYLL 384
N L + N+ L + L + L +N P+ N L
Sbjct: 484 FKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGF 541
Query: 385 AMEQ------NQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNN 438
+ N+ + P+ + +L L G N + + ++S + + +N
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNP 598
Query: 439 LSGVIPS 445
+ S
Sbjct: 599 NISIDLS 605
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 10/117 (8%)
Query: 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFL------ANNSLVGKIPANLSYCSR 132
L +L I+L N+ P + L+ + N + + P ++ C
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567
Query: 133 LTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYN 189
LT L +G N + + + + L + N ++ + L Y+
Sbjct: 568 LTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 5e-56
Identities = 84/425 (19%), Positives = 144/425 (33%), Gaps = 39/425 (9%)
Query: 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNS 118
+ L+L L + + S L +++ NTI P +L L+ L L +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 119 LVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNL 178
L ++C+ LT L L N + FV L L L N L+ L
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144
Query: 179 TFLELVSLSYN--------------------------SFEGNIPDSLGQLKELKSLAIGV 212
L+ + LS N + P + L L +
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204
Query: 213 NNLSGKIPPSIC---NLSFLVNFSVSQNQIHGSLPSCL-GLNFPNLKFFQIDQNFFTGSI 268
L + +C + + N S+S +Q+ + + GL + NL + N
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264
Query: 269 PVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD---EMGFINS 325
S + +LE + N+ FS + G+ N+ +L L+ S S S
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324
Query: 326 LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIG----NLVNL 381
L L+ N G+ + T L + L+ L L + + L
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPL 383
Query: 382 YLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP-STLGNLSSLSEIVLSNNNLS 440
++L + +N+ L +L+ LD G N ++ L ++ EI LS N
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443
Query: 441 GVIPS 445
+ +
Sbjct: 444 QLTRN 448
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 5e-50
Identities = 73/409 (17%), Positives = 145/409 (35%), Gaps = 33/409 (8%)
Query: 64 LDLMSKALSGSLSPHIG---NLSFLREINLMDNTIQGEIPPEFG--RLFRLEALFLANNS 118
L L + L SL+ + + +R ++L ++ + F + L L L+ N+
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259
Query: 119 LVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISP----- 173
L + ++ +L L N + L+ ++ L+L ++ IS
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319
Query: 174 ----FLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI----CN 225
L LE +++ N G + L LK L++ + S + +
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379
Query: 226 LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVS-LSNASKLEVIQIA 284
S L ++++N+I +L+ + N + + I ++
Sbjct: 380 HSPLHILNLTKNKISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438
Query: 285 NNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG 344
N + +F + +L L+L+ L + +S + L +L N
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS----SPSPFQPLRNLTILDLSNNNIAN 494
Query: 345 VLPHSITNLSSQLQVLFLGFNQL--------YGSIPSGIGNLVNLYLLAMEQNQFIGTIP 396
+ + L L++L L N L G + L +L++L +E N F
Sbjct: 495 INDDMLEGLEK-LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553
Query: 397 QEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
+ L L+ +D G N+ + S N SL + L N ++ V
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 2e-48
Identities = 81/383 (21%), Positives = 133/383 (34%), Gaps = 26/383 (6%)
Query: 82 LSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQN 141
+ + +NL N ++ F R +L +L + N++ P L VL+L N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 142 KLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQ 201
+L F F L L L N++ + L + LS+N + Q
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Query: 202 LKELKSLAIGVNNLSGKIPP--SICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQI 259
L+ L+ L + N + I S L +S NQI P C L +
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFL 202
Query: 260 DQNFFTGSIPVSLS---NASKLEVIQIANNSFSGKFSVNFGGMK--NLSHLILQSSNLGS 314
+ S+ L + + + ++N+ S + F G+K NL+ L L +NL
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262
Query: 315 GESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS--------QLQVLFLGFNQ 366
+D S A +L N + + HS+ L + +
Sbjct: 263 VGND------SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316
Query: 367 LYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK--IPSTLG 424
L L L L ME N G L+NL+ L + S + T
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376
Query: 425 NL--SSLSEIVLSNNNLSGVIPS 445
+L S L + L+ N +S +
Sbjct: 377 SLAHSPLHILNLTKNKISKIESD 399
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 9e-47
Identities = 78/408 (19%), Positives = 140/408 (34%), Gaps = 33/408 (8%)
Query: 64 LDLMSKALSGSLSPHIGNLSF--LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVG 121
L L + LS + + L + L ++L N + F L +LE FL N++
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286
Query: 122 KIPANLSYCSRLTVLSLGQNKLVGSI---------PFEFVFLYKLKGLSLHKNNLTGGIS 172
+L + L+L ++ SI F F +L L+ L++ N++ G S
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346
Query: 173 PFLGNLTFLELVSLSYNSFEGNIPDSLG----QLKELKSLAIGVNNLSGKIPPSICNLSF 228
L L+ +SLS + + L L + N +S + L
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406
Query: 229 LVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288
L + N+I L N+ + N + S + L+ + + +
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466
Query: 289 SG--KFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQ----- 341
F ++NL+ L L S+N + +D+M L KL +L N
Sbjct: 467 KNVDSSPSPFQPLRNLTILDL-SNNNIANINDDM-----LEGLEKLEILDLQHNNLARLW 520
Query: 342 ---FRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQE 398
G + + LS L +L L N +L L ++ + N
Sbjct: 521 KHANPGGPIYFLKGLSH-LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
Query: 399 MGKLLNLQGLDFGGNHFSGKIPSTLG-NLSSLSEIVLSNNNLSGVIPS 445
++L+ L+ N + G +L+E+ + N S
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 9e-46
Identities = 83/397 (20%), Positives = 141/397 (35%), Gaps = 21/397 (5%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
LDL L+ + L L L N IQ LF + L L + I
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312
Query: 124 PAN---------LSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPF 174
+ L L++ N + G F L LK LSL + +
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372
Query: 175 LG----NLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPS-ICNLSFL 229
+ L +++L+ N D+ L L+ L +G+N + ++ L +
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432
Query: 230 VNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG--SIPVSLSNASKLEVIQIANNS 287
+S N+ + P+L+ + + S P L ++ ++NN+
Sbjct: 433 FEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491
Query: 288 FSGKFSVNFGGMKNLSHLILQSSNLGS--GESDEMGFINSLANCSKLRVLSFGRNQFRGV 345
+ G++ L L LQ +NL ++ G I L S L +L+ N F +
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551
Query: 346 LPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLL-N 404
+L L+++ LG N L S N V+L L +++N + G N
Sbjct: 552 PVEVFKDLFE-LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610
Query: 405 LQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441
L LD N F S ++ ++E + LS
Sbjct: 611 LTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 4e-36
Identities = 56/294 (19%), Positives = 100/294 (34%), Gaps = 14/294 (4%)
Query: 157 LKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216
+ LT N+T L +L++N + + +L SL +G N +S
Sbjct: 6 HEVADCSHLKLTQVPDDLPTNITVL---NLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 217 GKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNAS 276
P L L ++ N++ NL + N
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 277 KLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLS 336
L + +++N S ++NL L+L ++ + + +S+E+ S L+ L
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF----ANSSLKKLE 177
Query: 337 FGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIG---NLVNLYLLAMEQNQFIG 393
NQ + P + L LFL QL S+ + ++ L++ +Q
Sbjct: 178 LSSNQIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 394 TIPQEMG--KLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
T K NL LD N+ + + L L L NN+ +
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 34/179 (18%), Positives = 53/179 (29%), Gaps = 13/179 (7%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQ--------GEIPPEFGRLFRLEALFLA 115
LDL + ++ + L L ++L N + G L L L L
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544
Query: 116 NNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGI-SPF 174
+N L ++ LG N L F LK L+L KN +T F
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Query: 175 LGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKI----PPSICNLSFL 229
L + + +N F+ + + + LS PP
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVR 663
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 1e-55
Identities = 67/474 (14%), Positives = 136/474 (28%), Gaps = 80/474 (16%)
Query: 18 DRAALQAFKSMI----------AHDPQRILNSWNDSRHFCEWDGVTCG--RRHRRVIALD 65
D AL+A + + +WN ++ W + RV L
Sbjct: 270 DYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLS 329
Query: 66 LMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPA 125
L G + IG L+ L+ ++ ++ + + +
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389
Query: 126 N-LSYCSRLTVLSLGQNKL----------------------------VGSIPFEFVFLYK 156
L Y RL + L Q+ + + I L K
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK 449
Query: 157 LKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216
L+ + + T E + Y N S LK+L + +
Sbjct: 450 LQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504
Query: 217 GKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNAS 276
++P + +L L + +++ N+ + +
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWT----------------RLADDEDTGP 548
Query: 277 KLEVIQIANNSFSG-KFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVL 335
K+++ + N+ S + M L L + + + + KL L
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--------LEAFGTNVKLTDL 600
Query: 336 SFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPS--GIGNLVNLYLLAMEQNQFIG 393
NQ +P + Q++ L N+L IP+ ++ + + N+
Sbjct: 601 KLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS 658
Query: 394 -----TIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
+ + K +N + N S +S I+LSNN ++ +
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 2e-50
Identities = 58/396 (14%), Positives = 122/396 (30%), Gaps = 32/396 (8%)
Query: 71 LSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYC 130
+ S + + N + L L + L N + ++P L
Sbjct: 455 FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514
Query: 131 SRLTVLSLGQNKLVG---------SIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTF 180
L L++ N+ + + + K++ + NNL S L +
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574
Query: 181 LELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQNQI 239
L L+ +N ++ G +L L + N + IP C + S N++
Sbjct: 575 LGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKL 631
Query: 240 HGSLPSCLGL-NFPNLKFFQIDQNFFTG-----SIPVSLSNASKLEVIQIANNSFSGKFS 293
+P+ + + N S + + ++ N +
Sbjct: 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690
Query: 294 VNFGGMKNLSHLILQSSNLGSGESDEMGFIN-SLANCSKLRVLSFGRNQFRGVLPHSITN 352
F +S +IL ++ + S + + + + N L + N+ +
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750
Query: 353 LSSQLQVLFLGFNQLYGSIPSGIGNLVNL------YLLAMEQNQFIGTIPQEMGKLLNLQ 406
L + + +N S P+ N L + E N+ + P + +L
Sbjct: 751 TLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809
Query: 407 GLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
L G N K+ L L + +++N +
Sbjct: 810 QLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISI 842
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 4e-47
Identities = 69/407 (16%), Positives = 131/407 (32%), Gaps = 47/407 (11%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVG-- 121
+ + NL L ++ L + ++P L L++L +A N +
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531
Query: 122 -------KIPANLSYCSRLTVLSLGQNKLVGSIPFEFVF--LYKLKGLSLHKNNLTGGIS 172
++ + ++ + +G N L P + KL L N +
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HL 588
Query: 173 PFLGNLTFLELVSLSYNSFEGNIPDSLGQ-LKELKSLAIGVNNLSGKIPP--SICNLSFL 229
G L + L YN E IP+ +++ L N L IP + ++ +
Sbjct: 589 EAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVM 646
Query: 230 VNFSVSQNQIHGSLPSCLG----LNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIAN 285
+ S N+I + N + N + S + I ++N
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706
Query: 286 NSFS-------GKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFG 338
N + N+ L+ + L+ + L + SD+ L +
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRA----TTLPYLSNMDVS 761
Query: 339 RNQFRGVLPHSITNLSSQLQVL------FLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI 392
N F P N S QL+ N++ P+GI +L L + N I
Sbjct: 762 YNCFSS-FPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-I 818
Query: 393 GTIPQEMGKLLNLQGLDFGGNHF-SGKIPSTLGNLSSLSEIVLSNNN 438
+ +++ L LD N S + S + + ++L +
Sbjct: 819 RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 1e-43
Identities = 66/366 (18%), Positives = 116/366 (31%), Gaps = 25/366 (6%)
Query: 93 NTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFV 152
+ + + R+ L LA G++P + + L VLS G + S
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 153 FLYKLKGLSLHKNNLTGGISP-FLGNLTFLELVSLSYNSFEGN---IPDSLGQLKELKSL 208
K+ + FL L L L ++ N P LK
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428
Query: 209 AIG-VNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGS 267
IG + N I +I L+ L + + + N D +
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY-DNIAVDWEDANS-----DYAKQYEN 482
Query: 268 IPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLA 327
+S SN L +++ N + + L L + + N G + LA
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI-ACNRGISAAQLKADWTRLA 541
Query: 328 ----NCSKLRVLSFGRNQFRGV-LPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLY 382
K+++ G N S+ + L +L N++ G V L
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK-LGLLDCVHNKV--RHLEAFGTNVKLT 598
Query: 383 LLAMEQNQFIGTIPQEMGKLL-NLQGLDFGGNHFSGKIPST--LGNLSSLSEIVLSNNNL 439
L ++ NQ I IP++ ++GL F N IP+ ++ + + S N +
Sbjct: 599 DLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKI 656
Query: 440 SGVIPS 445
+
Sbjct: 657 GSEGRN 662
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 1e-15
Identities = 25/192 (13%), Positives = 55/192 (28%), Gaps = 20/192 (10%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQ-------GEIPPEFGRLFRLEALFLAN 116
+ L + + S + I L +N + + + L + L
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737
Query: 117 NSLVGKIPANLSYC--SRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHK------NNLT 168
N L + + L+ + + N S P + + +LK + N +
Sbjct: 738 NKLTS-LSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795
Query: 169 GGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSF 228
+ L + + N + + L +L L I N S+C
Sbjct: 796 RQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIE 852
Query: 229 LVNFSVSQNQIH 240
+ + ++
Sbjct: 853 AGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 14/116 (12%)
Query: 74 SLSPHIGNLSFLREINL------MDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANL 127
S N S L+ + N I + P L L + +N + K+ L
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL 825
Query: 128 SYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL 183
+L +L + N + + L + + L +
Sbjct: 826 --TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT-----QDIRGCDALGI 874
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 5e-51
Identities = 75/417 (17%), Positives = 129/417 (30%), Gaps = 45/417 (10%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
LDL L S + L+ ++L IQ + L L L L N +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGG-ISPFLGNLTFLE 182
S S L L + L F L LK L++ N + + + NLT LE
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 183 LVSLSYNSFEGNIPDSLGQLKELK----SLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQ 238
+ LS N + L L ++ SL + +N ++ I P L ++ N
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNF 211
Query: 239 IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQI---------ANNSFS 289
++ L+ ++ F + + S LE + + +
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271
Query: 290 GKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHS 349
F + N+S L S + + + + L +F
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIER--------VKDFSYNFGWQHLELVNCKFGQFPTLK 323
Query: 350 ITNLSS------------------QLQVLFLGFNQLY--GSIPSGIGNLVNLYLLAMEQN 389
+ +L L+ L L N L G +L L + N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Query: 390 QFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP-STLGNLSSLSEIVLSNNNLSGVIPS 445
I T+ L L+ LDF ++ S +L +L + +S+ +
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 6e-48
Identities = 64/388 (16%), Positives = 130/388 (33%), Gaps = 30/388 (7%)
Query: 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLV 144
+ ++L N ++ F L+ L L+ + S L+ L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 145 GSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEG-NIPDSLGQLK 203
F L L+ L + NL + +G+L L+ +++++N + +P+ L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 204 ELKSLAIGVNNLSGKIPPSICNLSFLVNFSV----SQNQIHGSLPSCLGLNFPNLKFFQI 259
L+ L + N + + L + ++ S N ++ P L +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IRLHKLTL 207
Query: 260 DQNFFTGSIP-VSLSNASKLEVIQIANNSFSGKF---SVNFGGMKNLSHLILQSSNLGSG 315
NF + ++ + + LEV ++ F + + ++ L +L ++ L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 316 ESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL--------------- 360
+ I+ + + S V S L+++
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327
Query: 361 -FLGFNQLYGSIPSGIGNLVNLYLLAMEQNQ--FIGTIPQEMGKLLNLQGLDFGGNHFSG 417
L F G +L +L L + +N F G Q +L+ LD N
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387
Query: 418 KIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
+ S L L + ++NL +
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEF 414
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 4e-42
Identities = 72/398 (18%), Positives = 131/398 (32%), Gaps = 31/398 (7%)
Query: 64 LDLMSKALSGSLSPH-IGNLSFLREINLMDNTIQGEI---PPEFGRLFRLEALFLANNSL 119
L L + S ++ I L+ L L+ + E + L L L + L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264
Query: 120 ------VGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISP 173
+ I + + ++ SL + F + + + L L
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQ---- 318
Query: 174 FLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS--GKIPPSICNLSFLVN 231
L L L++ S +G S L L+ L + N LS G S + L
Sbjct: 319 -FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377
Query: 232 FSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVS-LSNASKLEVIQIANNSFSG 290
+S N + + LGL L+ + S + L + I++
Sbjct: 378 LDLSFNGVITMSSNFLGL--EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 291 KFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSI 350
F+ F G+ +L L + ++ + L L + Q + P +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 351 TNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLL-NLQGLD 409
+LSS LQVL + N + L +L +L N + + QE+ +L L+
Sbjct: 491 NSLSS-LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549
Query: 410 FGGNHFSGKIPST--LGNLSSLSEIVLSNNNLSGVIPS 445
N F+ L + ++++ + PS
Sbjct: 550 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 4e-39
Identities = 72/385 (18%), Positives = 125/385 (32%), Gaps = 27/385 (7%)
Query: 74 SLSPHIGNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKI---PANLSY 129
+ P L ++ L +N + L LE L + + S
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 130 CSRLTVLSLGQNKL------VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL 183
L L++ + +L + I F L + SL + + F +
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDF-SYNFGWQH 308
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGS- 242
+ L F L LK L + G S +L L +S+N +
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLT-----FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363
Query: 243 LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVN-FGGMKN 301
S +LK+ + N + + +LE + +++ + F ++N
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 302 LSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLF 361
L +L + ++ + S L VL N F+ I L L
Sbjct: 423 LIYLDISHTHTRVAFNG------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 362 LGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPS 421
L QL P+ +L +L +L M N F L +LQ LD+ NH
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
Query: 422 TLGNL-SSLSEIVLSNNNLSGVIPS 445
L + SSL+ + L+ N+ +
Sbjct: 537 ELQHFPSSLAFLNLTQNDFACTCEH 561
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 1e-31
Identities = 58/376 (15%), Positives = 101/376 (26%), Gaps = 57/376 (15%)
Query: 122 KIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL 181
KIP NL L L N L + F +L+ L L + + +L+ L
Sbjct: 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 182 ELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG 241
+ L+ N + + L L+ L NL+ I +L L +V+ N I
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNAS------------------------- 276
N NL+ + N L
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 277 --KLEVIQIANNSFSGKFSVN-FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLR 333
+L + + NN S G+ L L + + E ++L L
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 334 VLSFGRNQ---FRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQ 390
+ F + + L++ + L + L + +
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315
Query: 391 FIGTIPQEMGKLLNLQGLDFGGN---------------------HFSGKIPSTLGNLSSL 429
F ++ L L G F G + +SL
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 430 SEIVLSNNNLSGVIPS 445
+ LS N + + +
Sbjct: 376 KYLDLSFNGVITMSSN 391
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-29
Identities = 56/331 (16%), Positives = 107/331 (32%), Gaps = 31/331 (9%)
Query: 71 LSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSL----------- 119
+ L+ + +L+ TI+ +F F + L L N
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327
Query: 120 --------VGKIPANLSYCSRLTVLSLGQNKL--VGSIPFEFVFLYKLKGLSLHKNNLTG 169
G + L L L +N L G LK L L N +
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387
Query: 170 GISPFLGNLTFLELVSLSYNSFEGNIPDS-LGQLKELKSLAIGVNNLSGKIPPSICNLSF 228
+S L LE + +++ + S L+ L L I + LS
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 229 LVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288
L ++ N + + NL F + Q P + ++ S L+V+ +++N+F
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 289 SGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPH 348
+ + + +L L +++ + + E+ S L L+ +N F H
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-----HFPSSLAFLNLTQNDFACTCEH 561
Query: 349 S-ITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378
+ L + ++ + PS +
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSDKQGM 592
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 5e-19
Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 5/176 (2%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGK 122
LD+ + + LS L + + N+ Q P+ F L L L L+ L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNL-TFL 181
P + S L VL++ N F + L L+ L N++ L + + L
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 182 ELVSLSYNSFEGNIP--DSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVS 235
++L+ N F L +K+ + L + V + P + +++ +++
Sbjct: 546 AFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 5e-49
Identities = 69/388 (17%), Positives = 122/388 (31%), Gaps = 15/388 (3%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
L+ L + L L ++L I F RL+ L L N L+
Sbjct: 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL 183
LS L L Q + L+ L L N+++ P L++
Sbjct: 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS-GKIPPSICNLSFLVNFSVSQNQIHGS 242
+ N+ + + L++ +L++ +N I P + + + + Q
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217
Query: 243 LPSCL-GLNFPNLKFFQIDQNFFTGSIPVSLSN--ASKLEVIQIANNSFSGKFSVNFGGM 299
+ L +L + P +E I + + F S F
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277
Query: 300 KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQV 359
L L L +++L + L S L+ L N+F + S +N S L
Sbjct: 278 SGLQELDLTATHLSE-------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTH 329
Query: 360 LFLGFNQLYGSIPSG-IGNLVNLYLLAMEQNQ--FIGTIPQEMGKLLNLQGLDFGGNHFS 416
L + N + +G + NL NL L + + ++ L +LQ L+ N
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389
Query: 417 GKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
L + L+ L
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDA 417
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 2e-42
Identities = 75/412 (18%), Positives = 129/412 (31%), Gaps = 33/412 (8%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
L + +S + N L + L N I P+ +L+ L NN++
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169
Query: 124 PANLSYCSRLTV--LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL 181
++S + T L+L N + I + L+ I L N T
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228
Query: 182 ELVSL--SYNSFEGNIPDSLGQLKE--LKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQN 237
L E P L E ++S+ + + + S L ++
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288
Query: 238 QIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVN-F 296
+ LPS L LK + N F +S SN L + I N+ +
Sbjct: 289 HLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346
Query: 297 GGMKNLSHLILQSSNLGSGESDEMGFIN--------------------SLANCSKLRVLS 336
++NL L L ++ + + + N + C +L +L
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 337 FGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIP 396
+ + S L+VL L + L S L L L ++ N F
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466
Query: 397 QEMG---KLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
Q+ L L+ L S +L ++ + LS+N L+
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-39
Identities = 70/392 (17%), Positives = 130/392 (33%), Gaps = 18/392 (4%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQ-GEIPPEFGRLFRLEALFLANNSLVGK 122
LD + A+ + +L ++L N I P ++L +
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217
Query: 123 IPANLSYCS--RLTVLSLGQNKLVGSIPFEFVFLYK--LKGLSLHKNNLTGGISPFLGNL 178
I L + L + + P F L + ++ ++L K+ S
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277
Query: 179 TFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQ 238
+ L+ + L+ +P L L LK L + N S N L + S+ N
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336
Query: 239 IHGSLPSCLGLNFPNLKFFQIDQNFFTGS--IPVSLSNASKLEVIQIANNSFSGKFSVNF 296
L + N NL+ + + S + L N S L+ + ++ N + F
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 297 GGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQ 356
L L L + L ++ + N L+VL+ + L +
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQ-----SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA- 450
Query: 357 LQVLFLGFNQLYGSI---PSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGN 413
LQ L L N + + L L +L + L + +D N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510
Query: 414 HFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
+ L +L + + L++N++S ++PS
Sbjct: 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPS 541
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-36
Identities = 67/383 (17%), Positives = 119/383 (31%), Gaps = 20/383 (5%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
D+ + +S ++ + +S + INL + F L+ L L L ++
Sbjct: 236 EDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SEL 293
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISP-FLGNLTFLE 182
P+ L S L L L NK L LS+ N + L NL L
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Query: 183 LVSLSYNSFE--GNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240
+ LS++ E L L L+SL + N + L ++ ++
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413
Query: 241 GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSV---NFG 297
N LK + + S L+ + + N F +
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473
Query: 298 GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQL 357
+ L L+L +L S + + + + + N+ ++++L
Sbjct: 474 TLGRLEILVLSFCDLSSIDQH------AFTSLKMMNHVDLSHNRLTSSSIEALSHLKG-- 525
Query: 358 QVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417
L L N + +PS + L + + QN T L
Sbjct: 526 IYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC--SNIYFLEW--YKENMQKLED 581
Query: 418 KIPSTLGNLSSLSEIVLSNNNLS 440
+ N L + LS+ LS
Sbjct: 582 TEDTLCENPPLLRGVRLSDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-34
Identities = 61/362 (16%), Positives = 107/362 (29%), Gaps = 35/362 (9%)
Query: 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVG 145
+ N + + EIP E L + N L S LT L L + ++
Sbjct: 15 KTYNCENLGLN-EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 146 SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKEL 205
F ++L L L N L L L+ + L K L
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131
Query: 206 KSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNF-F 264
+SL +G N++S P L N IH + + ++ N
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGND 190
Query: 265 TGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFIN 324
I +++ + S+NFGG +NL + N
Sbjct: 191 IAGIEPGAFDSAVFQ-------------SLNFGGTQNLLVIFKGLKNS------------ 225
Query: 325 SLANCSKLRVLSFGRNQFRGVLPHSITNLS-SQLQVLFLGFNQLYGSIPSGIGNLVNLYL 383
L + +F + P L ++ + L + + + L
Sbjct: 226 ---TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282
Query: 384 LAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVI 443
L + + +P + L L+ L N F + N SL+ + + N +
Sbjct: 283 LDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341
Query: 444 PS 445
+
Sbjct: 342 GT 343
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 3e-40
Identities = 79/362 (21%), Positives = 147/362 (40%), Gaps = 33/362 (9%)
Query: 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138
+L+ L ++ + L + L +A + I + Y + L L+L
Sbjct: 18 DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV-ASIQG-IEYLTNLEYLNL 73
Query: 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDS 198
N++ P L KL L + N +T L NLT L + L+ ++
Sbjct: 74 NGNQITDISPLSN--LVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISP 127
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
L L ++ SL +G N+ + N++ L +V+++++ P + N +L
Sbjct: 128 LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IA-NLTDLYSLS 183
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318
++ N P L++ + L N + M L+ L + ++ +
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITD---- 235
Query: 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378
++ LAN S+L L G NQ + +++ +L+ +L++L +G NQ+ S S + NL
Sbjct: 236 ----LSPLANLSQLTWLEIGTNQISDI--NAVKDLT-KLKMLNVGSNQI--SDISVLNNL 286
Query: 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNN 438
L L + NQ + +G L NL L NH + P L +LS + +N
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344
Query: 439 LS 440
+
Sbjct: 345 IK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 9e-37
Identities = 74/360 (20%), Positives = 139/360 (38%), Gaps = 33/360 (9%)
Query: 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLV 144
+ + I +I P L L S+ + +T L + K+
Sbjct: 2 AATLATLPAPI-NQIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56
Query: 145 GSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKE 204
SI +L L+ L+L+ N +T L NL L + + N +L L
Sbjct: 57 ASIQ-GIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTN 111
Query: 205 LKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFF 264
L+ L + +N+S + NL+ + + ++ N S S L N L + + ++
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLS-NMTGLNYLTVTESKV 167
Query: 265 TGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFIN 324
P ++N + L + + N + +L + + + I
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--------IT 215
Query: 325 SLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLL 384
+AN ++L L G N+ + P + NLS L L +G NQ+ S + + +L L +L
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSP--LANLSQ-LTWLEIGTNQI--SDINAVKDLTKLKML 270
Query: 385 AMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
+ NQ + + L L L N + +G L++L+ + LS N+++ + P
Sbjct: 271 NVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-32
Identities = 68/320 (21%), Positives = 123/320 (38%), Gaps = 31/320 (9%)
Query: 126 NLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVS 185
+ + L + + + E L + L + + I + LT LE ++
Sbjct: 17 PDADLAEGIRAVLQKASVTDVVTQEE--LESITKLVVAGEKVAS-IQG-IEYLTNLEYLN 72
Query: 186 LSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS 245
L+ N P L L +L +L IG N ++ ++ NL+ L ++++ I P
Sbjct: 73 LNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPL 128
Query: 246 CLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHL 305
N + + N + LSN + L + + + + +L L
Sbjct: 129 A---NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSL 182
Query: 306 ILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFN 365
L + + I+ LA+ + L + NQ + P + N++ L L +G N
Sbjct: 183 SLNYNQIED--------ISPLASLTSLHYFTAYVNQITDITP--VANMTR-LNSLKIGNN 231
Query: 366 QLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGN 425
++ + S + NL L L + NQ + + L L+ L+ G N S S L N
Sbjct: 232 KI--TDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNN 285
Query: 426 LSSLSEIVLSNNNLSGVIPS 445
LS L+ + L+NN L
Sbjct: 286 LSQLNSLFLNNNQLGNEDME 305
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVL 136
+ +L+ L+ +N+ N I L +L +LFL NN L + + + LT L
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316
Query: 137 SLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168
L QN + P L K+ +
Sbjct: 317 FLSQNHITDIRPLA--SLSKMDSADFANQVIK 346
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 1e-37
Identities = 92/384 (23%), Positives = 152/384 (39%), Gaps = 39/384 (10%)
Query: 61 VIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLV 120
+ L ++ ++S +L + + I+ L L + +NN L
Sbjct: 26 KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLT 81
Query: 121 GKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTF 180
P L ++L + + N++ P L L GL+L N +T L NLT
Sbjct: 82 DITP--LKNLTKLVDILMNNNQIADITPLAN--LTNLTGLTLFNNQITD--IDPLKNLTN 135
Query: 181 LELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240
L + LS N+ +L L L+ L+ G N ++ P + NL+ L +S N++
Sbjct: 136 LNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVS 190
Query: 241 GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMK 300
S L NL+ N + P L + L+ + + N +
Sbjct: 191 D--ISVLA-KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLT 243
Query: 301 NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL 360
NL+ L L ++ + + + L+ +KL L G NQ + P + L+ L L
Sbjct: 244 NLTDLDLANNQISN--------LAPLSGLTKLTELKLGANQISNISP--LAGLT-ALTNL 292
Query: 361 FLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP 420
L NQL P I NL NL L + N P + L LQ L F N S
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--V 346
Query: 421 STLGNLSSLSEIVLSNNNLSGVIP 444
S+L NL++++ + +N +S + P
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP 370
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 7e-37
Identities = 86/369 (23%), Positives = 146/369 (39%), Gaps = 37/369 (10%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVL 136
+ L+ L +IN +N + P L +L + + NN + P L+ + LT L
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117
Query: 137 SLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIP 196
+L N++ P + L L L L N ++ L LT L+ +S +
Sbjct: 118 TLFNNQITDIDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---L 170
Query: 197 DSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKF 256
L L L+ L I N +S + L+ L + + NQI P NL
Sbjct: 171 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG---ILTNLDE 225
Query: 257 FQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGE 316
++ N +L++ + L + +ANN S G+ L+ L L ++ + +
Sbjct: 226 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN-- 279
Query: 317 SDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIG 376
I+ LA + L L NQ + P I+NL L L L FN + P +
Sbjct: 280 ------ISPLAGLTALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VS 328
Query: 377 NLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSN 436
+L L L N+ + + L N+ L G N S P L NL+ ++++ L++
Sbjct: 329 SLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384
Query: 437 NNLSGVIPS 445
+ +
Sbjct: 385 QAWTNAPVN 393
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-36
Identities = 87/364 (23%), Positives = 141/364 (38%), Gaps = 35/364 (9%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVL 136
+ NL+ L +I + +N I L L L L NN + P L + L L
Sbjct: 84 TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139
Query: 137 SLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIP 196
L N + L L+ LS N +T L NLT LE + +S N
Sbjct: 140 ELSSNTISDISALSG--LTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--I 192
Query: 197 DSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKF 256
L +L L+SL N +S P + L+ L S++ NQ+ L + NL
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLA-SLTNLTD 247
Query: 257 FQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGE 316
+ N + P LS +KL +++ N S G+ L++L L + L
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED-- 301
Query: 317 SDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIG 376
I+ ++N L L+ N + P +++L+ +LQ LF N++ S S +
Sbjct: 302 ------ISPISNLKNLTYLTLYFNNISDISP--VSSLT-KLQRLFFYNNKV--SDVSSLA 350
Query: 377 NLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSN 436
NL N+ L+ NQ P + L + L ++ + N+S + +
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408
Query: 437 NNLS 440
L
Sbjct: 409 GALI 412
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-28
Identities = 70/337 (20%), Positives = 125/337 (37%), Gaps = 34/337 (10%)
Query: 108 RLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNL 167
L + + ++ + +I + + LG+ + ++ L ++ L + +
Sbjct: 2 PLGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI 58
Query: 168 TGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLS 227
I + L L ++ S N P L L +L + + N ++ + NL+
Sbjct: 59 K-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLT 112
Query: 228 FLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNS 287
L ++ NQI P N NL ++ N + +LS + L+ + N
Sbjct: 113 NLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV 167
Query: 288 FSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLP 347
+ L L + S+ + I+ LA + L L NQ + P
Sbjct: 168 TD---LKPLANLTTLERLDISSNKVSD--------ISVLAKLTNLESLIATNNQISDITP 216
Query: 348 HSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQG 407
+ L++ L L L NQL + +L NL L + NQ P + L L
Sbjct: 217 --LGILTN-LDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269
Query: 408 LDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
L G N S P L L++L+ + L+ N L + P
Sbjct: 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 4e-26
Identities = 67/344 (19%), Positives = 125/344 (36%), Gaps = 32/344 (9%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVL 136
+ L+ L++++ N + P L LE L +++N + + L+ + L L
Sbjct: 150 SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESL 204
Query: 137 SLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIP 196
N++ P L L LSL+ N L I +LT L + L+ N P
Sbjct: 205 IATNNQISDITPLGI--LTNLDELSLNGNQLKD-IGTL-ASLTNLTDLDLANNQISNLAP 260
Query: 197 DSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKF 256
L L +L L +G N +S + L+ L N +++NQ+ P N NL +
Sbjct: 261 --LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPIS---NLKNLTY 313
Query: 257 FQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGE 316
+ N + P +S+ +KL+ + NN S + + N++ L + +
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD-- 367
Query: 317 SDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIG 376
+ LAN +++ L + + N+S V + + + S G
Sbjct: 368 ------LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGG 421
Query: 377 NLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP 420
+ + + + G FSG +
Sbjct: 422 SYTEPDI----TWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 2e-35
Identities = 59/335 (17%), Positives = 118/335 (35%), Gaps = 37/335 (11%)
Query: 109 LEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168
E L+ ++ + LS R + + + + L
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69
Query: 169 GGISPFLGNLTFLELVSL--SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNL 226
+ L + T V+L PD +L L+ + I L ++P ++
Sbjct: 70 A-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126
Query: 227 SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN 286
+ L ++++N + +LP+ + + L+ I +P L++
Sbjct: 127 AGLETLTLARNPLR-ALPASIA-SLNRLRELSIRACPELTELPEPLASTDASGEH----- 179
Query: 287 SFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346
G+ NL L L+ + + S S+AN L+ L + L
Sbjct: 180 ----------QGLVNLQSLRLEWTGIRS-------LPASIANLQNLKSLKIRNSPLSA-L 221
Query: 347 PHSITNLSSQLQVLFL-GFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNL 405
+I +L L+ L L G L + P G L L ++ + T+P ++ +L L
Sbjct: 222 GPAIHHLPK-LEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279
Query: 406 QGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
+ LD G ++PS + L + I++ + +
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-30
Identities = 48/322 (14%), Positives = 98/322 (30%), Gaps = 35/322 (10%)
Query: 126 NLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVS 185
+ + S L + + L + + N N ++ +
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDV---LSQWQRHYNADRNRWHSAWR-QANSNNPQIET 62
Query: 186 LSYNSFEGNIPDSLGQLKE--LKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243
+ + + D L + +L + L + P LS L + ++ + L
Sbjct: 63 RTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119
Query: 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303
P + F L+ + +N ++P S+++ ++L + I +
Sbjct: 120 PDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS- 176
Query: 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLG 363
L+ L R LP SI NL + L+ L +
Sbjct: 177 --------------------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQN-LKSLKIR 214
Query: 364 FNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTL 423
+ L ++ I +L L L + + P G L+ L +P +
Sbjct: 215 NSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
Query: 424 GNLSSLSEIVLSNNNLSGVIPS 445
L+ L ++ L +PS
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPS 295
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 9e-26
Identities = 45/282 (15%), Positives = 89/282 (31%), Gaps = 25/282 (8%)
Query: 173 PFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNF 232
+ + E + ++ D L Q + + + + + N +
Sbjct: 6 HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIE 61
Query: 233 SVSQNQIHGSLPSCLG-LNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGK 291
+ + + + L P ++ P S L+ + I +
Sbjct: 62 TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118
Query: 292 FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSIT 351
L L L + L + S+A+ ++LR LS LP +
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRA-------LPASIASLNRLRELSIRACPELTELPEPLA 171
Query: 352 NLS--------SQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLL 403
+ LQ L L + + S+P+ I NL NL L + + + + + L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP-LSALGPAIHHLP 229
Query: 404 NLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
L+ LD G P G + L ++L + + +P
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 43/252 (17%), Positives = 96/252 (38%), Gaps = 19/252 (7%)
Query: 74 SLSPHIGNLSF--LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCS 131
+ + + + + + L + + P + RL L+ + + L+ ++P + +
Sbjct: 70 ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127
Query: 132 RLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNL---------TGGISPFLGNLTFLE 182
L L+L +N L ++P L +L+ LS+ + S L L+
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186
Query: 183 LVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGS 242
+ L + ++P S+ L+ LKSL I + LS + P+I +L L + +
Sbjct: 187 SLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN 244
Query: 243 LPSCLGLNFPNLKFFQI-DQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKN 301
P G LK + D + ++P+ + ++LE + + + +
Sbjct: 245 YPPIFG-GRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Query: 302 LSHLILQSSNLG 313
+++
Sbjct: 303 NCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 41/209 (19%), Positives = 72/209 (34%), Gaps = 14/209 (6%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
+ + + L L + + L + L N ++ +P L RL L + + ++
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166
Query: 124 PANL---------SYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPF 174
P L L L L + S+P L LK L + + L+ + P
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224
Query: 175 LGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSV 234
+ +L LE + L + N P G LK L + + +P I L+ L +
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 235 SQNQIHGSLPSCLGLNFPNLKFFQIDQNF 263
LPS + P + +
Sbjct: 285 RGCVNLSRLPSLIA-QLPANCIILVPPHL 312
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 3e-12
Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 2/126 (1%)
Query: 74 SLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRL 133
SL I NL L+ + + ++ + + P L +LE L L + + P + L
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 134 TVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEG 193
L L + ++P + L +L+ L L + + L ++ + + +
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH-LQA 314
Query: 194 NIPDSL 199
+
Sbjct: 315 QLDQHR 320
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
L + + LS +L P I +L L E++L T PP FG L+ L L + S + +
Sbjct: 211 LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168
P ++ ++L L L + +P L + + +
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 63/389 (16%), Positives = 113/389 (29%), Gaps = 28/389 (7%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVG- 121
LD+ + + L E+ L N I L L L
Sbjct: 186 LDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244
Query: 122 --------KIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISP 173
I L + L +F L + +SL ++
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LE 301
Query: 174 FLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFS 233
+ + +S+ + L LK L + G I L L
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT-----LTMNKGSISFKKVALPSLSYLD 356
Query: 234 VSQNQIHGSLP-SCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKF 292
+S+N + S S L +L+ + N + + +L+ + +++
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVT 415
Query: 293 SVN-FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSIT 351
+ F ++ L +L + +N + L L N F+ ++
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDG------IFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 352 NLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFG 411
++ L L L QL L L LL M N + +L +L LD
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529
Query: 412 GNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
N SL+ L+NN+++
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-34
Identities = 77/386 (19%), Positives = 130/386 (33%), Gaps = 28/386 (7%)
Query: 72 SGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPAN-LSYC 130
L N +++ N I I + + +L L L N I L
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228
Query: 131 SRLTVLSLGQNKLVGSIPFEFVFLYKLKGL--------SLHKNNLTGGISPFLGNLTFLE 182
+ L V L + E ++GL L N L +
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288
Query: 183 LVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGS 242
+SL+ S + + + + +SL+I L P +L FL + +++ N+ S
Sbjct: 289 AMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ-FPTL--DLPFLKSLTLTMNKGSIS 343
Query: 243 LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSN--ASKLEVIQIANNSFSGKFSVNFGGMK 300
+ P+L + + +N + S S S+ + L + ++ N S NF G++
Sbjct: 344 FKK---VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE 399
Query: 301 NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL 360
L HL Q S L + ++ + KL L + L+S L L
Sbjct: 400 ELQHLDFQHSTL-----KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTL 453
Query: 361 FLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKI 419
+ N + S + N NL L + + Q L LQ L+ N+
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513
Query: 420 PSTLGNLSSLSEIVLSNNNLSGVIPS 445
S L SLS + S N +
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGI 539
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 3e-34
Identities = 68/394 (17%), Positives = 127/394 (32%), Gaps = 41/394 (10%)
Query: 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK 142
S + I+L N ++ F L+ L L+ + L+ L L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 143 LVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEG-NIPDSLGQ 201
+ P F L L+ L + L S +G L L+ +++++N +P
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 202 LKELKSLAIGVNNLSGKIPPSICNLS----FLVNFSVSQNQIHGSLPSCLGLNFPNLKFF 257
L L + + N + + L ++ +S N I L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG--IKLHEL 209
Query: 258 QIDQNFFTGSIP-VSLSNASKLEVIQIANNSFSGKFSVN------FGGMKNLSHLILQSS 310
+ NF + +I L N + L V ++ F + ++ G+ +++ + +
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269
Query: 311 NLGSGESDEMGF------------------INSLANCSKLRVLSFGRNQFRGVLPHSITN 352
D + F + + K + LS R Q + +
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329
Query: 353 LSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQ--FIGTIPQEMGKLLNLQGLDF 410
L+ L L N+ SI L +L L + +N F G +L+ LD
Sbjct: 330 ----LKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 411 GGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
N + + L L + ++ L V
Sbjct: 384 SFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-25
Identities = 61/355 (17%), Positives = 104/355 (29%), Gaps = 26/355 (7%)
Query: 97 GEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYK 156
G + P + + + L K+P ++ S + L N L + F +
Sbjct: 2 GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57
Query: 157 LKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216
L+ L L + + L L + L+ N + P S L L++L L+
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 217 GKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNAS 276
I L L +V+ N IH N NL + N+ L
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
Query: 277 KL----EVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKL 332
+ + ++ N L L L N S + L N + L
Sbjct: 178 ENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTL-RGNFNSSNIMK----TCLQNLAGL 231
Query: 333 RVLSFGRNQFRGVLPHSITNLSS-------QLQVLFLGFNQLYGSIPSGIGNLVNLYLLA 385
V +F+ I S + L + + L N+ ++
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291
Query: 386 MEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
+ +++ K Q L L L SL+ L+ N S
Sbjct: 292 LAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT---LTMNKGS 341
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 9e-15
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Query: 324 NSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYL 383
S +N S+L+ L R + + + L L L L N + P L +L
Sbjct: 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHH-LSNLILTGNPIQSFSPGSFSGLTSLEN 108
Query: 384 LAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG-KIPSTLGNLSSLSEIVLSNNNLSGV 442
L + + +G+L+ L+ L+ N K+P+ NL++L + LS N + +
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
Query: 443 IPS 445
+
Sbjct: 169 TVN 171
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 5e-13
Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 1/116 (0%)
Query: 330 SKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQN 389
S + + N + + +S +N S +LQ L L ++ L +L L + N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90
Query: 390 QFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
P L +L+ L + +G L +L ++ +++N +
Sbjct: 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 19/95 (20%), Positives = 33/95 (34%)
Query: 351 TNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDF 410
++ S + + L FN L N L L + + + + L +L L
Sbjct: 28 DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87
Query: 411 GGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
GN P + L+SL +V L+ +
Sbjct: 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 61/362 (16%), Positives = 134/362 (37%), Gaps = 30/362 (8%)
Query: 81 NLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSLG 139
++++ T E L + + N+++ K+PA L ++ +L+L
Sbjct: 19 YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77
Query: 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSL 199
++ + F + + ++ L + N + N+ L ++ L N
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137
Query: 200 GQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
+L +L++ NNL +I + L N +S N++ + P+L
Sbjct: 138 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHAN 192
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318
+ N + +L+ +E + ++NS + V L+ L LQ +NL
Sbjct: 193 VSYNLLS-----TLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLTD---- 240
Query: 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378
L N L + N+ ++ H + +L+ L++ N+L ++ +
Sbjct: 241 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRL-VALNLYGQPI 294
Query: 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNN 438
L +L + N + + + + L+ L N + L +L + LS+N+
Sbjct: 295 PTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 350
Query: 439 LS 440
Sbjct: 351 WD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 60/322 (18%), Positives = 122/322 (37%), Gaps = 26/322 (8%)
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLE 182
I +NL Y + + FE + L K ++ + + + L + +E
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 183 LVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHG 241
L++L+ E + ++ L +G N + +PP + N+ L + +N +
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130
Query: 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKN 301
SLP + N P L + N + + L+ +Q+++N + V+ + +
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPS 187
Query: 302 LSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLF 361
L H + S N +++LA + L N V ++ +L +L
Sbjct: 188 LFHANV-SYN----------LLSTLAIPIAVEELDASHNSINVVRG----PVNVELTILK 232
Query: 362 LGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIP 420
L N L + + + N L + + N+ + I K+ L+ L N +
Sbjct: 233 LQHNNL--TDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALN 288
Query: 421 STLGNLSSLSEIVLSNNNLSGV 442
+ +L + LS+N+L V
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHV 310
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 3e-20
Identities = 47/325 (14%), Positives = 98/325 (30%), Gaps = 35/325 (10%)
Query: 146 SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKEL 205
I + + + L ++V+ ++ L +++
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71
Query: 206 KSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFF 264
+ L + + +I + + N I LP + N P L +++N
Sbjct: 72 ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129
Query: 265 TGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMG--- 321
+ N KL + ++NN+ F +L +L L S+ L + +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189
Query: 322 -------FINSLANCSKLRVLSFGRNQFRGVLPHSITNLS------------------SQ 356
+++LA + L N V L+
Sbjct: 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG 249
Query: 357 LQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHF 415
L + L +N+L I + L L + N+ + + + L+ LD NH
Sbjct: 250 LVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL 307
Query: 416 SGKIPSTLGNLSSLSEIVLSNNNLS 440
+ L + L +N++
Sbjct: 308 L-HVERNQPQFDRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 12/190 (6%)
Query: 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138
+ + E++ N+I + L L L +N+L L L + L
Sbjct: 201 LAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDL 255
Query: 139 GQNKLVGSIPFE-FVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPD 197
N+L I + FV + +L+ L + N L ++ + + L+++ LS+N ++
Sbjct: 256 SYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312
Query: 198 SLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFF 257
+ Q L++L + N++ + S L N ++S N + L N
Sbjct: 313 NQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 369
Query: 258 QIDQNFFTGS 267
DQ+
Sbjct: 370 DADQHCKIDY 379
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 3e-12
Identities = 32/178 (17%), Positives = 70/178 (39%), Gaps = 11/178 (6%)
Query: 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326
I +L + I + F + N + ++S + + L
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA------ALL 65
Query: 327 ANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLA 385
+ ++ +L+ Q + ++ + +Q L++GFN + +P + N+ L +L
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123
Query: 386 MEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
+E+N + ++P+ + L L N+ T +SL + LS+N L+ V
Sbjct: 124 LERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANLSYCSRLTV 135
+ N L E++L N ++ +I F ++ RLE L+++NN LV + L V
Sbjct: 242 AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299
Query: 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195
L L N L+ + +L+ L L N++ + L+ ++LS+N ++ N
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWDCN- 354
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIP 220
+ + A+ + KI
Sbjct: 355 -SLRALFRNVARPAVDDADQHCKID 378
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-29
Identities = 84/416 (20%), Positives = 148/416 (35%), Gaps = 42/416 (10%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQ-GEIPPEFGRLFRLEALFLANNSLVGK 122
L + L+ + IG+L L+E+N+ N IQ ++P F L LE L L++N +
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 123 IPANLSYCSRLTV----LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISP-FLGN 177
+L ++ + L L N + P F + +L L+L N + + +
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQG 223
Query: 178 LTFLELVSLSYNSFEGN---IPDSLGQLKELKSLAIGVNNLSG------KIPPSICNLSF 228
L LE+ L F L+ L +L I L+ I L+
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 229 LVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSL---------------- 272
+ +FS+ I + +L+ F SL
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343
Query: 273 SNASKLEVIQIANN--SFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCS 330
+ LE + ++ N SF G S + G +L +L L + + + ++
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-------MSSNFLGLE 396
Query: 331 KLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQ 390
+L L F + + + S+ L L + + L +L +L M N
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 391 FIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
F ++ +L NL LD P+ +LSSL + +++N L V
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 62/388 (15%), Positives = 129/388 (33%), Gaps = 32/388 (8%)
Query: 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLV 144
+ ++L N ++ F L+ L L+ + S L+ L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 145 GSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSF-EGNIPDSLGQLK 203
F L L+ L + NL + +G+L L+ +++++N +P+ L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 204 ELKSLAIGVNNLSGKIPPSICNLSFL----VNFSVSQNQIHGSLPSCLGLNFPNLKFFQI 259
L+ L + N + + L + ++ +S N ++ P L +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA--FKEIRLHKLTL 207
Query: 260 DQNFFTGSIP----VSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSG 315
NF + ++ L+ ++ + + ++ L +L ++ L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 316 ESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQL-------- 367
+ I+ + + S V S L+++ F Q
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327
Query: 368 ---------YGSIPSGIGNLVNLYLLAMEQNQ--FIGTIPQEMGKLLNLQGLDFGGNHFS 416
G+ S + +L +L L + +N F G Q +L+ LD N
Sbjct: 328 KRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 417 GKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
+ S L L + ++NL +
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSNLKQMSE 413
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 6e-25
Identities = 83/407 (20%), Positives = 135/407 (33%), Gaps = 51/407 (12%)
Query: 72 SGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALF----LANNSLVGKIPANL 127
S L + NL+ L ++L N IQ + L ++ L L+ N + I
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGA 196
Query: 128 SYCSRLTVLSLGQNKLVGSIPFE-FVFLYKLKGLSLHK------NNLTGGISPFLGNLTF 180
RL L+L N ++ L L+ L NL L L
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 181 LELVSLSYNS---FEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICN------------ 225
L + + +I D L + S ++ + ++ N
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCK 315
Query: 226 --------LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFT--GSIPVSLSNA 275
L L + + N+ + ++ P+L+F + +N + G S
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 276 SKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVL 335
+ L+ + ++ N S NF G++ L HL Q SNL M + + L L
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-----MSEFSVFLSLRNLIYL 426
Query: 336 SFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGT 394
R LSS L+VL + N + I L NL L + Q Q +
Sbjct: 427 DISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQ 484
Query: 395 IPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
+ L +LQ L+ N L+SL +I L N
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 3e-19
Identities = 68/308 (22%), Positives = 114/308 (37%), Gaps = 18/308 (5%)
Query: 69 KALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLS 128
+ S + NL+ + +I F L + + L + ++ ++ + S
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK-DFS 301
Query: 129 YCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSY 188
Y L L K F + L LK L+ N + +L LE + LS
Sbjct: 302 YNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSR 356
Query: 189 N--SFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSC 246
N SF+G S LK L + N + + + L L + + +
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 247 LGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVN-FGGMKNLSHL 305
+ L+ NL + I + + S LEV+++A NSF F + F ++NL+ L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 306 ILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFN 365
L L + + S L+VL+ NQ + V L+S LQ ++L N
Sbjct: 476 DLSQCQLEQLSP------TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS-LQKIWLHTN 528
Query: 366 QLYGSIPS 373
S P
Sbjct: 529 PWDCSCPR 536
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 21/95 (22%), Positives = 32/95 (33%)
Query: 351 TNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDF 410
NL + L L FN L + L +L + + + L +L L
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 411 GGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
GN LSSL ++V NL+ +
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 3e-29
Identities = 62/362 (17%), Positives = 135/362 (37%), Gaps = 30/362 (8%)
Query: 81 NLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSLG 139
++++ T E L + + N+++ K+PA L ++ +L+L
Sbjct: 25 YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 83
Query: 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSL 199
++ + F + + ++ L + N + N+ L ++ L N
Sbjct: 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 143
Query: 200 GQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
+L +L++ NNL +I + L N +S N++ + L P+L
Sbjct: 144 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL---IPSLFHAN 198
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318
+ N + +L+ +E + ++NS + V L+ L LQ +NL
Sbjct: 199 VSYNLLS-----TLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLTD---- 246
Query: 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378
L N L + N+ ++ H + +L+ L++ N+L ++ +
Sbjct: 247 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRL-VALNLYGQPI 300
Query: 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNN 438
L +L + N + + + + L+ L N + L +L + LS+N+
Sbjct: 301 PTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 356
Query: 439 LS 440
Sbjct: 357 WD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 9e-23
Identities = 61/322 (18%), Positives = 123/322 (38%), Gaps = 26/322 (8%)
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLE 182
I +NL Y + + FE + L K ++ + + + L + +E
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78
Query: 183 LVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHG 241
L++L+ E + ++ L +G N + +PP + N+ L + +N +
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 136
Query: 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKN 301
SLP + N P L + N + + L+ +Q+++N + V+ + +
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPS 193
Query: 302 LSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLF 361
L H + S NL +++LA + L N V ++ +L +L
Sbjct: 194 LFHANV-SYNL----------LSTLAIPIAVEELDASHNSINVVRG----PVNVELTILK 238
Query: 362 LGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIP 420
L N L + + + N L + + N+ + I K+ L+ L N +
Sbjct: 239 LQHNNL--TDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALN 294
Query: 421 STLGNLSSLSEIVLSNNNLSGV 442
+ +L + LS+N+L V
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHV 316
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 2e-18
Identities = 49/326 (15%), Positives = 102/326 (31%), Gaps = 37/326 (11%)
Query: 146 SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKEL 205
I + + + L ++V+ ++ L +++
Sbjct: 18 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77
Query: 206 KSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFF 264
+ L + + +I + + N I LP + N P L +++N
Sbjct: 78 ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 135
Query: 265 TGSIPVSL-SNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMG-- 321
+ S+P + N KL + ++NN+ F +L +L L S+ L + +
Sbjct: 136 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194
Query: 322 --------FINSLANCSKLRVLSFGRNQFRGVLPHSITNLS------------------S 355
+++LA + L N V L+
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP 254
Query: 356 QLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNH 414
L + L +N+L I + L L + N+ + + + L+ LD NH
Sbjct: 255 GLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH 312
Query: 415 FSGKIPSTLGNLSSLSEIVLSNNNLS 440
+ L + L +N++
Sbjct: 313 LL-HVERNQPQFDRLENLYLDHNSIV 337
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 3e-15
Identities = 55/313 (17%), Positives = 99/313 (31%), Gaps = 52/313 (16%)
Query: 80 GNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138
++++ + N I+ +PP F + L L L N L +P +
Sbjct: 96 AYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGI----------- 142
Query: 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDS 198
F KL LS+ NNL T L+ + LS N ++
Sbjct: 143 ------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-- 187
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
L + L + N LS ++ + S N I+ + + L +
Sbjct: 188 LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV---NVELTILK 238
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318
+ N T L N L + ++ N F M+ L L + ++ L +
Sbjct: 239 LQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296
Query: 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378
L+VL N + + L+ L+L N + ++ +
Sbjct: 297 -------GQPIPTLKVLDLSHNHLL-HVERNQPQFDR-LENLYLDHNSI-VTLK--LSTH 344
Query: 379 VNLYLLAMEQNQF 391
L L + N +
Sbjct: 345 HTLKNLTLSHNDW 357
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 12/185 (6%)
Query: 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138
+ + E++ N+I + L L L +N+L L L + L
Sbjct: 207 LAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDL 261
Query: 139 GQNKLVGSIPFE-FVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPD 197
N+L I + FV + +L+ L + N L ++ + + L+++ LS+N ++
Sbjct: 262 SYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 318
Query: 198 SLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFF 257
+ Q L++L + N++ + S L N ++S N + L N
Sbjct: 319 NQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 375
Query: 258 QIDQN 262
DQ+
Sbjct: 376 DADQH 380
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 32/178 (17%), Positives = 70/178 (39%), Gaps = 11/178 (6%)
Query: 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326
I +L + I + F + N + ++S + + L
Sbjct: 18 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA------ALL 71
Query: 327 ANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLA 385
+ ++ +L+ Q + ++ + +Q L++GFN + +P + N+ L +L
Sbjct: 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 129
Query: 386 MEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
+E+N + ++P+ + L L N+ T +SL + LS+N L+ V
Sbjct: 130 LERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-09
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANLSYCSRLTV 135
+ N L E++L N ++ +I F ++ RLE L+++NN LV + L V
Sbjct: 248 AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305
Query: 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195
L L N L+ + +L+ L L N++ + L L+ ++LS+N ++ N
Sbjct: 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCN- 360
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIP 220
+ + A+ + KI
Sbjct: 361 -SLRALFRNVARPAVDDADQHCKID 384
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 7e-29
Identities = 60/388 (15%), Positives = 117/388 (30%), Gaps = 33/388 (8%)
Query: 79 IGNLSFLREINLMDNTIQG-EIPPEFGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVL 136
G LS L+ +NLM N Q + F L L+ L + N +I + + L L
Sbjct: 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153
Query: 137 SLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIP 196
+ L + + L+LH + + F L+ + + L +
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213
Query: 197 DSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH---------------- 240
L + + S S L L+ + + +++
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273
Query: 241 -GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGM 299
+ + ++ I Q + + S K++ I + N+ +
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333
Query: 300 KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR--GVLPHSITNLSSQL 357
K+L L L + + + + L+ L +N R + L + L
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPS---LQTLVLSQNHLRSMQKTGEILLTLKN-L 389
Query: 358 QVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417
L + N +P + L + I + L+ LD N+
Sbjct: 390 TSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTG-IRVVKT--CIPQTLEVLDVSNNNLD- 444
Query: 418 KIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
L L E+ +S N L + +
Sbjct: 445 SFSL---FLPRLQELYISRNKLKTLPDA 469
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 60/383 (15%), Positives = 126/383 (32%), Gaps = 26/383 (6%)
Query: 79 IGNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLS 137
+ + L+ + L + I I + F L LE L L++N L + S L L+
Sbjct: 46 LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104
Query: 138 LGQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGISP-FLGNLTFLELVSLSYNSFEGNI 195
L N + F L L+ L + I LT L + + S
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG-------SLPSCLG 248
SL ++++ L + ++ + + LS + + +
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224
Query: 249 LNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVN------FGGMKNL 302
+ + + F + L +L ++ + + +G N + +
Sbjct: 225 MKKLAFRGSVLTDESFN-ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283
Query: 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL 362
+ ++ ++ + K++ ++ ++ V +L S L+ L L
Sbjct: 284 ETVTIRRLHIPQFYLFYD-LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS-LEFLDL 341
Query: 363 GFNQL---YGSIPSGIGNLVNLYLLAMEQNQF--IGTIPQEMGKLLNLQGLDFGGNHFSG 417
N + Y + G +L L + QN + + + L NL LD N F
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400
Query: 418 KIPSTLGNLSSLSEIVLSNNNLS 440
+P + + + LS+ +
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIR 423
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 56/349 (16%), Positives = 123/349 (35%), Gaps = 19/349 (5%)
Query: 109 LEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168
+++L L+ N + +L C+ L VL L +++ F L L+ L L N+L+
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 169 GGISPFLGNLTFLELVSLSYNSF-EGNIPDSLGQLKELKSLAIGVNNLSGKIPP-SICNL 226
S + G L+ L+ ++L N + + L L++L IG +I L
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 227 SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN 286
+ L + + L + ++ + + + + S + +++ +
Sbjct: 148 TSLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206
Query: 287 SFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANC----SKLRVLSFGRNQF 342
+ + + S + + + + L S++ N
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266
Query: 343 RGVLPHSITNLS-------SQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTI 395
P +S ++ L + L+ + + L + + +E ++ + +
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLV 325
Query: 396 PQEMGKLL-NLQGLDFGGNHFSGKIPST---LGNLSSLSEIVLSNNNLS 440
P + L +L+ LD N + G SL +VLS N+L
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 60/400 (15%), Positives = 125/400 (31%), Gaps = 42/400 (10%)
Query: 64 LDLMSKALSGSLSPH-IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGK 122
L + + + L+ L E+ + +++ + + L L +
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187
Query: 123 IPANLSYCSRLTVLSLGQNKLVG---SIPFEFVFLYKLKGLSLHKNNLTGG--------- 170
+ S + L L L S +K L+ + LT
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247
Query: 171 -ISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG----KIPPSI-C 224
L + F + F + D + +L +++++ I ++ ++
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307
Query: 225 NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSI---PVSLSNASKLEVI 281
L + +V +++ +P + +L+F + +N L+ +
Sbjct: 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366
Query: 282 QIANNSFS--GKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGR 339
++ N K +KNL+ L + + +S K+R L+
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-------MPDSCQWPEKMRFLNLSS 419
Query: 340 NQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEM 399
R V L +VL + N L S + L LY+ +N+ + T+P +
Sbjct: 420 TGIRVVKTCIPQTL----EVLDVSNNNL-DSFSLFLPRLQELYI---SRNK-LKTLP-DA 469
Query: 400 GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNL 439
L + N L+SL +I L N
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 51/334 (15%), Positives = 105/334 (31%), Gaps = 29/334 (8%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
L+L L+ + + + F L +L L + +
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV---- 256
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL 183
C+ + ++ V ++ L + + L +S L ++
Sbjct: 257 --EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPS---ICNLSFLVNFSVSQNQIH 240
+++ + LK L+ L + N + + + L +SQN +
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374
Query: 241 GSLPSCLGL--NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298
S+ + NL I +N F +P S K+ + +++ V
Sbjct: 375 -SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR---VVKTCI 429
Query: 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQ 358
+ L L + ++NL S +L+ L RN+ + + S L L
Sbjct: 430 PQTLEVLDVSNNNLDSFSL----------FLPRLQELYISRNKLKTLPDAS---LFPVLL 476
Query: 359 VLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI 392
V+ + NQL L +L + + N +
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 328 NCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAME 387
+C V F + L++ ++ L L FN++ + NL +L ++
Sbjct: 3 SCDASGVCDGRSRSFTSIPS----GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58
Query: 388 QNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
++ I TI + L +L+ LD NH S S G LSSL + L N + +
Sbjct: 59 SSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-28
Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 52/312 (16%)
Query: 129 YCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSY 188
+ VL++G++ L ++P + L + NNLT + L LE+ S
Sbjct: 38 LNNGNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLTS-LPALPPELRTLEV---SG 90
Query: 189 NSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLG 248
N ++P L EL + + +L P L L + NQ+ SLP
Sbjct: 91 NQLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKL---WIFGNQLT-SLPVLPP 141
Query: 249 LNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQ 308
L+ + N S+P S L + NN + + L L +
Sbjct: 142 ----GLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPS---GLQELSVS 189
Query: 309 SSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLY 368
+ L S + KL + N+ LP + L + L + N+L
Sbjct: 190 DNQLAS-------LPTLPSELYKLWAYN---NRLT-SLPALPSGL----KELIVSGNRL- 233
Query: 369 GSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSS 428
S+P L L + N+ + ++P L L N + ++P +L +LSS
Sbjct: 234 TSLPVLPSELKELMV---SGNR-LTSLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSS 285
Query: 429 LSEIVLSNNNLS 440
+ + L N LS
Sbjct: 286 ETTVNLEGNPLS 297
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 2e-27
Identities = 68/356 (19%), Positives = 120/356 (33%), Gaps = 81/356 (22%)
Query: 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLV 144
+N+ ++ + +P + L + +N+L +PA L L + N+L
Sbjct: 42 NAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT 94
Query: 145 GSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKE 204
S+P L +L S +L L L + N ++P L+E
Sbjct: 95 -SLPVLPPGLLELSIFSNPLTHLP----ALPSGLCKLWI---FGNQLT-SLPVLPPGLQE 145
Query: 205 LKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFF 264
L + N L+ +P L L NQ+ SLP L+ + N
Sbjct: 146 LS---VSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPS----GLQELSVSDNQL 193
Query: 265 TGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFIN 324
S+P S L + NN +
Sbjct: 194 A-SLPTLPSE---LYKLWAYNNR-----------------------------------LT 214
Query: 325 SL-ANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYL 383
SL A S L+ L N+ LP + L + L + N+L S+P L++L +
Sbjct: 215 SLPALPSGLKELIVSGNRLTS-LPVLPSEL----KELMVSGNRL-TSLPMLPSGLLSLSV 268
Query: 384 LAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNL 439
+NQ + +P+ + L + ++ GN S + L ++S + +
Sbjct: 269 ---YRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSA---PGYSGPI 317
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 2e-20
Identities = 75/385 (19%), Positives = 117/385 (30%), Gaps = 82/385 (21%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
L + L+ SL L R + + N + +P L L L +
Sbjct: 66 LVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-AL 119
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL 183
P+ L L + N+L S+P L+ LS+ N L + L L
Sbjct: 120 PSG------LCKLWIFGNQL-TSLPVL---PPGLQELSVSDNQLA-SLPALPSELCKLW- 167
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243
N ++P L+EL + N L+ +P L L N++ SL
Sbjct: 168 --AYNNQLT-SLPMLPSGLQELS---VSDNQLA-SLPTLPSELYKL---WAYNNRLT-SL 216
Query: 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303
P+ LK + N T S+PV S L+ + ++ N
Sbjct: 217 PALPS----GLKELIVSGNRLT-SLPVLPSE---LKELMVSGN----------------- 251
Query: 304 HLILQSSNLGSGESDEMGFINSL-ANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL 362
+ SL S L LS RNQ LP S+ +LSS + L
Sbjct: 252 ------------------RLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSS-ETTVNL 291
Query: 363 GFNQLYGSIPSGIGNLVNLYLLAMEQNQF---IGTIPQEMGKLLNLQGLDFGGNHFSG-- 417
N L + + + + +F + P+E L
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPA 351
Query: 418 --KIPSTLGNLSSLSEIVLSNNNLS 440
G + L + LS
Sbjct: 352 PADRWHMFGQEDNADAFSLFLDRLS 376
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 2e-16
Identities = 48/218 (22%), Positives = 77/218 (35%), Gaps = 39/218 (17%)
Query: 223 ICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQ 282
C + +V ++ + +LP CL ++ I N T S+P L ++
Sbjct: 36 ACLNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALPPE---LRTLE 87
Query: 283 IANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQF 342
++ N + V G+ LS ++L + S L L NQ
Sbjct: 88 VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA-------------LPSGLCKLWIFGNQL 133
Query: 343 RGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKL 402
LP L Q L + NQL S+P+ L L+ NQ + ++P
Sbjct: 134 T-SLPVLPPGL----QELSVSDNQL-ASLPALPSELCKLWAY---NNQ-LTSLPMLPS-- 181
Query: 403 LNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
LQ L N + +P+ L L NN L+
Sbjct: 182 -GLQELSVSDNQLA-SLPTLPSELYKLW---AYNNRLT 214
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 2e-15
Identities = 59/309 (19%), Positives = 108/309 (34%), Gaps = 30/309 (9%)
Query: 74 SLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRL 133
SL L +E+++ DN + +P L++L A NN L +PA S L
Sbjct: 175 SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKLWAY---NNRLT-SLPALPS---GL 223
Query: 134 TVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEG 193
L + N+L S+P V +LK L + N LT + L L S+ N
Sbjct: 224 KELIVSGNRL-TSLP---VLPSELKELMVSGNRLTS-LPMLPSGLLSL---SVYRNQLT- 274
Query: 194 NIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPN 253
+P+SL L ++ + N LS + ++ ++ +S + + S
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334
Query: 254 LKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLG 313
++ + + A + + +N+ + LS + G
Sbjct: 335 H---LAAADWLVPAREGEPAPADRWHMFGQEDNA-----DAFSLFLDRLSETENFIKDAG 386
Query: 314 SGESDEMGFINSLANCSKLRVLSFGR-NQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIP 372
++ LA LR +F + +T Q++ + L N G
Sbjct: 387 FKAQ-ISSWLAQLAEDEALRANTFAMATEATSSCEDRVTFFLHQMKNVQLVHNAEKGQYD 445
Query: 373 SGIGNLVNL 381
+ + LV
Sbjct: 446 NDLAALVAT 454
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 6e-07
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 353 LSSQLQVLFLGFNQLYGSIPSGIG-NLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFG 411
L++ VL +G + L ++P + ++ L + + + ++P L+ L+
Sbjct: 38 LNNGNAVLNVGESGL-TTLPDCLPAHITTLVI----PDNNLTSLPALPP---ELRTLEVS 89
Query: 412 GNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
GN + +P L LS +L +
Sbjct: 90 GNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG 122
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 7e-27
Identities = 72/379 (18%), Positives = 120/379 (31%), Gaps = 64/379 (16%)
Query: 75 LSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLS------ 128
++P + +FL+E + + E+P E + + A + P
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 129 -------YCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL 181
+ L L L S+P L+ L N+LT + +L L
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELPQSLKSL 116
Query: 182 ELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG 241
+ + + + P L+ L + N L P + N SFL V N +
Sbjct: 117 LVDNNNLKALSDLPP-------LLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLK- 166
Query: 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKN 301
LP P+L+F N +P L N L I NN +
Sbjct: 167 KLPDLP----PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNN----SLKKLPDLPLS 216
Query: 302 LSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLF 361
L ++ ++ L + L N L + N + LP + L+ L
Sbjct: 217 LESIVAGNNILEE--------LPELQNLPFLTTIYADNNLLK-TLPDLPPS----LEALN 263
Query: 362 LGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPS 421
+ N L +P +L L + + P NL L+ N +
Sbjct: 264 VRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCD 314
Query: 422 TLGNLSSLSEIVLSNNNLS 440
+L L+ +SNN L
Sbjct: 315 LPPSLEELN---VSNNKLI 330
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 4e-26
Identities = 80/412 (19%), Positives = 136/412 (33%), Gaps = 71/412 (17%)
Query: 57 RHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLAN 116
R+ L+L + LS SL +L + N++ E+P L L
Sbjct: 69 LDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNL 123
Query: 117 NSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLG 176
+L P L L + N+L +P E LK + + N+L +
Sbjct: 124 KALSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLPP 173
Query: 177 NLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQ 236
+L F+ + N E +P+ L L L ++ N+L K+P +L +V
Sbjct: 174 SLEFI---AAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGN 224
Query: 237 NQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNF 296
N + LP L P L D N ++P + LE + + +N +
Sbjct: 225 NILE-ELPELQNL--PFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPELP 276
Query: 297 GGMKNLSHLILQSSNLGSGESDEMGFINSLAN--------CSKLRVLSFGRNQFRGVLPH 348
+ L S L S + ++N+ +N L L+ N+ LP
Sbjct: 277 QSLTFLDVSENIFSGL-SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA 334
Query: 349 SITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKL------ 402
L + L FN L +P NL L++ E N P +
Sbjct: 335 LPPRL----ERLIASFNHL-AEVPELPQNLKQLHV---EYNPLR-EFPDIPESVEDLRMN 385
Query: 403 ----------LNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
NL+ L N + P ++ L +++ +
Sbjct: 386 SHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLR---MNSERVVDPYE 433
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 8e-26
Identities = 76/395 (19%), Positives = 133/395 (33%), Gaps = 41/395 (10%)
Query: 64 LDLMSKALSGSLSPH-IGNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVG 121
+DL +++ L+ L L+ + + T I F L L L L N +
Sbjct: 35 VDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL- 92
Query: 122 KIPAN-LSYCSRLTVLSLGQNKLVGSIPFEFVF--LYKLKGLSLHKNNLTGGISP--FLG 176
++ + + L VL+L Q L G++ F L L+ L L NN+ I P F
Sbjct: 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFL 151
Query: 177 NLTFLELVSLSYN---SFEGNIPDSLGQ-------LKELKSLAIGVNNLSGKIPPSICNL 226
N+ ++ L++N S + L + + L + +
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 227 SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN 286
+ + +S N S+ K + + K N
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK----DPDNF 267
Query: 287 SFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346
+F G + L S + + + ++ + L L+ +N+ +
Sbjct: 268 TFKGL------EASGVKTCDLSKSKIFALLK------SVFSHFTDLEQLTLAQNEINKID 315
Query: 347 PHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLN 404
++ L + L L L N L GSI S + NL L +L + N I + + L N
Sbjct: 316 DNAFWGL-THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPN 372
Query: 405 LQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNL 439
L+ L N L+SL +I L N
Sbjct: 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 75/375 (20%), Positives = 139/375 (37%), Gaps = 37/375 (9%)
Query: 85 LREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLGQNK 142
+ ++L N+I E+ F RL L+ L + + I N S L +L L N+
Sbjct: 32 VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 143 LVGSIPFE-FVFLYKLKGLSLHKNNLTGGISP--FLGNLTFLELVSLSYNSFEGNIPDSL 199
+ + F L L+ L+L + NL G + F LT LE++ L N+ + P S
Sbjct: 91 FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 200 -GQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
++ L + N + SIC L + L ++
Sbjct: 150 FLNMRRFHVLDLTFNKVK-----SICEEDLL----------NFQGKHFTLLRLSSITLQD 194
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHL--ILQSSNLGSGE 316
+++ + + + + + ++ N F + F + + ++ S++ G
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254
Query: 317 SDEMGFINSLANC-------SKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYG 369
S N S ++ +++ +L ++ + L+ L L N++
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEI-N 312
Query: 370 SIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLS 427
I L +L L + QN +G+I M L L+ LD NH + L
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 428 SLSEIVLSNNNLSGV 442
+L E+ L N L V
Sbjct: 372 NLKELALDTNQLKSV 386
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 44/226 (19%), Positives = 76/226 (33%), Gaps = 24/226 (10%)
Query: 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPV-SLSNASK 277
+P + + S N I L +L+F +++Q I + S
Sbjct: 28 LPAHVNYVDL------SLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80
Query: 278 LEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSF 337
L ++++ N F + F G+ NL L L NL N + L +L
Sbjct: 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG----NFFKPLTSLEMLVL 136
Query: 338 GRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-----------GNLVNLYLLAM 386
N + + P S + VL L FN++ SI L ++ L M
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDM 195
Query: 387 EQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEI 432
+ K ++ LD GN F + + + ++I
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 9e-09
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 6/117 (5%)
Query: 332 LRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQ 390
+ + N + S + L LQ L + I + L +L +L ++ NQ
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 391 FIGTIPQEM-GKLLNLQGLDFGGNHF-SGKIPS-TLGNLSSLSEIVLSNNNLSGVIP 444
+ L NL+ L + + L+SL +VL +NN+ + P
Sbjct: 91 -FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-25
Identities = 67/409 (16%), Positives = 146/409 (35%), Gaps = 45/409 (11%)
Query: 64 LDLMSKALSGSLSPH--IGNLSFLREINLMDNTIQG-EIPPEFGRLFRLEALFLANNSLV 120
L L LS ++ NL L ++L N I+ + P FG+L L+++ ++N +
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
Query: 121 GKIPANLS--YCSRLTVLSLGQNKLVGSIPFEFV-FLYKLKGLSLHKNNLTGGISPFLGN 177
L L+ SL N L + ++ + + + L +++ GN
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS-------GN 214
Query: 178 LTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNL--SFLVNFSVS 235
+++ N+ + SL + G +N+ + L S + + +S
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274
Query: 236 QNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVN 295
+ +LK + N + L+V+ ++ N +S N
Sbjct: 275 HGFVFSLNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333
Query: 296 FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGV---------- 345
F G+ ++++ LQ +++ + + KL+ L N +
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQD------QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387
Query: 346 ----LPHSITNLSSQLQVLFLGFNQLYG-SIPSGIGNLVNLYLLAMEQNQFIGTIPQEM- 399
++ ++ ++ L N+L I + + +L +L + QN+ + +
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQT 446
Query: 400 -GKLLNLQGLDFGGNHFSGKI-----PSTLGNLSSLSEIVLSNNNLSGV 442
+ +L+ L G N LS L + L++N L+ +
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 6e-25
Identities = 74/415 (17%), Positives = 142/415 (34%), Gaps = 52/415 (12%)
Query: 74 SLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLF--RLEALFLANNSLVGKIPANLSYCS 131
L P G L+ L+ I+ N I E L L LA NSL ++ + C
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 132 ------RLTVLSLGQNKLV------------GSIPFEFVFLYKLKGLSLHKNNLTGGISP 173
L +L + N S F + + + G +N+
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Query: 174 FLGNL--TFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVN 231
L + + + LS+ LK+LK L + N ++ + L L
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318
Query: 232 FSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGK 291
++S N + L S P + + + +N + KL+ + + +N+ +
Sbjct: 319 LNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-- 375
Query: 292 FSVNFGGMKNLSHLILQSSNLGSGESDEM---------------GFINSLANCSKLRVLS 336
+ ++ + L + L + + + L L++L
Sbjct: 376 ---TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432
Query: 337 FGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-----GNLVNLYLLAMEQNQF 391
+N+F + + L+ LFLG N L + + + L +L +L + N
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY- 491
Query: 392 IGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
+ ++P + L L+GL N + + L ++L + +S N L P
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPD 544
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 6e-25
Identities = 71/368 (19%), Positives = 125/368 (33%), Gaps = 42/368 (11%)
Query: 81 NLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSLG 139
L+ + L N I+ F L +L+ L L + I L +L LG
Sbjct: 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISP--FLGNLTFLELVSLSYNSFEG-NIP 196
+K+ P F L+ L L L+ L+ + + NL L + LS N +
Sbjct: 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141
Query: 197 DSLGQLKELKSLAIGVNNLSGKIPPSICNLSF--LVNFSVSQNQIHGSLPSCLGLNFPNL 254
S G+L LKS+ N + + L L FS++ N ++ + G
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201
Query: 255 KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGS 314
+ ++ +G N +++ +N+ S + + ++ N+
Sbjct: 202 RNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254
Query: 315 GESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSG 374
+ + LA S +R L + L L+VL L +N++ I
Sbjct: 255 PDQN---TFAGLARSS-VRHLDLSHGFVFSLNSRVFETLKD-LKVLNLAYNKI-NKIADE 308
Query: 375 IGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVL 434
F G L NLQ L+ N S L ++ I L
Sbjct: 309 A---------------FYG--------LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 435 SNNNLSGV 442
N+++ +
Sbjct: 346 QKNHIAII 353
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-23
Identities = 65/377 (17%), Positives = 126/377 (33%), Gaps = 26/377 (6%)
Query: 80 GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLS--YCSRLTVLS 137
GN + N I + +++ + S + L
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272
Query: 138 LGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPD 197
L + F L LK L+L N + L L++++LSYN
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332
Query: 198 SLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH--GSLPSCLGLNFPNLK 255
+ L ++ + + N+++ + L L + N + +PS + K
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK 392
Query: 256 FFQIDQNFFTG-------------SIPVSLSNASKLEVIQIANNSFSG-KFSVNFGGMKN 301
+ + T I L L+++ + N FS +
Sbjct: 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452
Query: 302 LSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLF 361
L L L + L E+ + + S L+VL N + P ++L++ L+ L
Sbjct: 453 LEQLFLGENMLQLAWETELCW-DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA-LRGLS 510
Query: 362 LGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP- 420
L N+L + NL +L + +NQ + ++ ++L LD N F +
Sbjct: 511 LNSNRL-TVLSHND-LPANLEILDISRNQ-LLAPNPDV--FVSLSVLDITHNKFICECEL 565
Query: 421 STLGNLSSLSEIVLSNN 437
ST N + + + ++
Sbjct: 566 STFINWLNHTNVTIAGP 582
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 31/140 (22%), Positives = 47/140 (33%), Gaps = 18/140 (12%)
Query: 322 FINSLANCS------------KLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYG 369
F +A L N R V S L QLQ+L LG
Sbjct: 4 FDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYTPL 62
Query: 370 SIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKI--PSTLGN 425
+I NL NL +L + ++ I + + L +L L S + N
Sbjct: 63 TIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121
Query: 426 LSSLSEIVLSNNNLSGVIPS 445
L +L+ + LS N + +
Sbjct: 122 LKALTRLDLSKNQIRSLYLH 141
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-24
Identities = 42/271 (15%), Positives = 88/271 (32%), Gaps = 21/271 (7%)
Query: 170 GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFL 229
I N ++ ++ +S + + +K L + N LS + + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 230 VNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFS 289
++S N ++ L L+ ++ N+ L +E + ANN+ S
Sbjct: 61 ELLNLSSNVLY-ETLDLESL--STLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112
Query: 290 GKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHS 349
V+ + ++ L ++ + S+++ L N+ V
Sbjct: 113 ---RVSCSRGQGKKNIYLANNKITMLRD------LDEGCRSRVQYLDLKLNEIDTVNFAE 163
Query: 350 ITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLD 409
+ S L+ L L +N +Y + + L L + N+ + + E + +
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWIS 220
Query: 410 FGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
N I L +L L N
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-21
Identities = 49/343 (14%), Positives = 116/343 (33%), Gaps = 27/343 (7%)
Query: 74 SLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRL 133
++ N + + + D++++ + + ++ L L+ N L A+L+ ++L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 134 TVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEG 193
+L+L N L + L L+ L L+ N + L +E + + N+
Sbjct: 61 ELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112
Query: 194 NIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPN 253
+ S GQ K++ + N ++ S + + N+I + L +
Sbjct: 113 RVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 254 LKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLG 313
L+ + NF + +KL+ + +++N + F ++ + L+++ L
Sbjct: 171 LEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227
Query: 314 SGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPS 373
+L L N F + + ++Q + + +
Sbjct: 228 L-------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTG 277
Query: 374 GIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416
+ L +P L + G +H
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAPFADRL----IALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 2e-18
Identities = 46/298 (15%), Positives = 97/298 (32%), Gaps = 31/298 (10%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
+ +L +L+ + ++E++L N + + +LE L L++N L
Sbjct: 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL 183
+L S L L L N + E + ++ L NN++ +
Sbjct: 73 TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNI-- 125
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG-KIPPSICNLSFLVNFSVSQNQIHGS 242
L+ N G ++ L + +N + + L + ++ N I+
Sbjct: 126 -YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183
Query: 243 LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNL 302
+ + LK + N + +A+ + I + NN +NL
Sbjct: 184 VKGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239
Query: 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL 360
H L+ + +C LR + + V ++ L+ Q +
Sbjct: 240 EHFDLRGNGF---------------HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 8e-15
Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 23/223 (10%)
Query: 225 NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIA 284
N + V+ + + + L + N+K + N + L+ +KLE++ ++
Sbjct: 8 NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 285 NNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG 344
+N +++ + L L L ++N + L + L N
Sbjct: 67 SNVLYE--TLDLESLSTLRTLDL-NNNY----------VQELLVGPSIETLHAANNNISR 113
Query: 345 VLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIP--QEMGKL 402
V + ++L N++ G + L ++ N+ I T+ +
Sbjct: 114 VSCSRGQGK----KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASS 168
Query: 403 LNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
L+ L+ N + + + L + LS+N L+ + P
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPE 209
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 17/176 (9%)
Query: 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326
+I N ++ ++ ++ ++S + N+ L L + L + + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD------L 54
Query: 327 ANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAM 386
A +KL +L+ N L + +LS+ L+ L L N + + ++ L
Sbjct: 55 APFTKLELLNLSSNVLYETLD--LESLST-LRTLDLNNNYV-----QELLVGPSIETLHA 106
Query: 387 EQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
N I + G+ + + N + G S + + L N + V
Sbjct: 107 ANNN-ISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 370 SIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSL 429
+I N + + + + N++ LD GN S + L + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 430 SEIVLSNNNLSGVIP 444
+ LS+N L +
Sbjct: 61 ELLNLSSNVLYETLD 75
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 52/386 (13%), Positives = 111/386 (28%), Gaps = 28/386 (7%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
+ +L +L+ + ++E++L N + + +LE L L++N L
Sbjct: 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL 183
+L S L L L N + E + ++ L NN++ +
Sbjct: 73 TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNI-- 125
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG-KIPPSICNLSFLVNFSVSQNQIHGS 242
L+ N G ++ L + +N + + L + ++ N I+
Sbjct: 126 -YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183
Query: 243 LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNL 302
+ + LK + N + +A+ + I + NN +NL
Sbjct: 184 VKGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239
Query: 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL 362
H L N + F + RV + + + + + + +
Sbjct: 240 EHFDL-RGNGFHCGTLRDFFSKN------QRVQTVAKQTVKKLTGQNEEECTV-PTLGHY 291
Query: 363 GFNQLYGSIPSGIGNLVNLYLLAME----QNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418
G L+ L Q + E + +D +
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351
Query: 419 IPSTLGNLSSLSEIVLSNNNLSGVIP 444
I + + L +
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVS 377
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 1e-20
Identities = 51/366 (13%), Positives = 118/366 (32%), Gaps = 21/366 (5%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVL 136
+ +LS LR ++L +N +Q E +E L ANN++ ++ + +
Sbjct: 74 LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCSR--GQGKKNI 125
Query: 137 SLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNI 195
L NK+ + +++ L L N + + + LE ++L YN ++
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255
+ +LK+L + N L+ + P + + + S+ N++ + L NL+
Sbjct: 185 KGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLE 240
Query: 256 FFQIDQN-FFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGS 314
F + N F G++ S +++ + + N + +
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEECTVPTLGHYGAYCCED 298
Query: 315 GESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSG 374
+ + +L + +LS ++ + ++ + + Q I
Sbjct: 299 LPAPFADRLIALKR-KEHALLSGQGSETERLECERENQ--ARQREIDALKEQYRTVIDQV 355
Query: 375 IGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVL 434
L ++ + L G ++ S L +
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRA 414
Query: 435 SNNNLS 440
Sbjct: 415 IVKRYE 420
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 6e-14
Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 23/223 (10%)
Query: 225 NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIA 284
N + V+ + + + L + N+K + N + L+ +KLE++ ++
Sbjct: 8 NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 285 NNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG 344
+N +++ + L L L ++N + L + L N
Sbjct: 67 SNVLYE--TLDLESLSTLRTLDL-NNNY----------VQELLVGPSIETLHAANNNISR 113
Query: 345 VLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEM--GKL 402
V + ++L N++ G + L ++ N+ I T+
Sbjct: 114 VSCSRGQGK----KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASS 168
Query: 403 LNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
L+ L+ N + + + L + LS+N L+ + P
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPE 209
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 9e-05
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 370 SIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSL 429
+I N + + + + N++ LD GN S + L + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 430 SEIVLSNNNLSGVIP 444
+ LS+N L +
Sbjct: 61 ELLNLSSNVLYETLD 75
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 61/323 (18%), Positives = 124/323 (38%), Gaps = 20/323 (6%)
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPF-LGNLTFL 181
+P + + +L LG+N++ EF L+ L L++N ++ + P NL L
Sbjct: 26 VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNL 82
Query: 182 ELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIH 240
+ L N + L L L I N + + + +L L + V N +
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV 141
Query: 241 GSLPSCLGLNFPNLKFFQIDQNFFTGSIPV-SLSNASKLEVIQIANNSFSGKFSVNFGGM 299
+ +L+ +++ T SIP +LS+ L V+++ + + + +F +
Sbjct: 142 -YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199
Query: 300 KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQV 359
L L + + + L LS V ++ +L L+
Sbjct: 200 YRLKVLEISHWPYLDTMTP------NCLYGLNLTSLSITHCNLTAVPYLAVRHLVY-LRF 252
Query: 360 LFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSG 417
L L +N + +I + L+ L + + Q + + L L+ L+ GN +
Sbjct: 253 LNLSYNPI-STIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTT 310
Query: 418 KIPSTLGNLSSLSEIVLSNNNLS 440
S ++ +L ++L +N L+
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 6e-24
Identities = 61/315 (19%), Positives = 121/315 (38%), Gaps = 18/315 (5%)
Query: 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSLGQN 141
+ R ++L N I+ EF LE L L N + + + L L L N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSN 90
Query: 142 KLVGSIPFE-FVFLYKLKGLSLHKNNLTGGISPFL-GNLTFLELVSLSYNSFEGNIPDSL 199
+L IP F L L L + +N + + ++ +L L+ + + N +
Sbjct: 91 RLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148
Query: 200 GQLKELKSLAIGVNNLSGKIPP-SICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
L L+ L + NL+ IP ++ +L L+ + I+ ++ LK +
Sbjct: 149 SGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLE 206
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318
I + ++ + L + I + + + + + L L L + + + E
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG- 265
Query: 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GN 377
+ L +L+ + Q V P++ L+ L+VL + NQL ++ + +
Sbjct: 266 -----SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY-LRVLNVSGNQL-TTLEESVFHS 318
Query: 378 LVNLYLLAMEQNQFI 392
+ NL L ++ N
Sbjct: 319 VGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 8e-19
Identities = 46/261 (17%), Positives = 93/261 (35%), Gaps = 15/261 (5%)
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243
V F +P+ + E + L +G N + + L +++N + ++
Sbjct: 16 VLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AV 71
Query: 244 PSCLGLNFPNLKFFQIDQNFFTGSIPV-SLSNASKLEVIQIANNSFSGKFSVNFGGMKNL 302
N NL+ + N IP+ + S L + I+ N F + NL
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130
Query: 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL 362
L + ++L + + + L L+ + + ++++L L VL L
Sbjct: 131 KSLEVGDNDLVYISH------RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG-LIVLRL 183
Query: 363 GFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPS 421
+ +I L L +L + ++ T+ LNL L + +
Sbjct: 184 RHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242
Query: 422 TLGNLSSLSEIVLSNNNLSGV 442
+ +L L + LS N +S +
Sbjct: 243 AVRHLVYLRFLNLSYNPISTI 263
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 7/187 (3%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLG 139
L+ L ++ L + IP E L L L L + ++ + RL VL +
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPF-LGNLTFLELVSLSYNSFEGNIPDS 198
+ ++ ++ L LS+ NLT + + +L +L ++LSYN
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFF 257
L +L L+ + + L+ + P L++L +VS NQ+ +L + + NL+
Sbjct: 268 LHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETL 325
Query: 258 QIDQNFF 264
+D N
Sbjct: 326 ILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 11/197 (5%)
Query: 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSS 310
+ + +N ++ LE +++ N S F + NL L L+S+
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90
Query: 311 NLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGS 370
L S L L N+ +L + +L L+ L +G N L
Sbjct: 91 RLKLIPLG------VFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDL-VY 142
Query: 371 IPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSS 428
I L +L L +E+ + +IP E L L L + + + L
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201
Query: 429 LSEIVLSNNNLSGVIPS 445
L + +S+ +
Sbjct: 202 LKVLEISHWPYLDTMTP 218
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 1e-20
Identities = 65/374 (17%), Positives = 114/374 (30%), Gaps = 17/374 (4%)
Query: 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLV 144
+N+ N I + L +L L +++N + + + L L L NKL
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL- 81
Query: 145 GSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLK 203
I LK L L N I GN++ L+ + LS E + + L
Sbjct: 82 VKISCHP--TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 204 ELKSLAIGVNNLSGKIPP-SICNLSFLVNFSV-SQNQIHGSLPSCLGLNFPNLKFFQIDQ 261
K L + K P + + + V N+ + NL+ I
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199
Query: 262 NFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLG-------- 313
LS +KL+ +N + + L+ ++
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259
Query: 314 SGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPS 373
G+ D F S + L + + F I + S + + +
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHML 318
Query: 374 GIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS--GKIPSTLGNLSSLSE 431
+ L N T+ + G L L+ L N KI + SL +
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378
Query: 432 IVLSNNNLSGVIPS 445
+ +S N++S
Sbjct: 379 LDISQNSVSYDEKK 392
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 1e-19
Identities = 61/389 (15%), Positives = 125/389 (32%), Gaps = 42/389 (10%)
Query: 80 GNLSFLREINLMDNTIQG-EIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138
L+ ++L N I EFG + +L+ L L+ L +++ + VL +
Sbjct: 87 HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146
Query: 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDS 198
E L SLH T F+ +++ + +L ++ + + D+
Sbjct: 147 LGETYGEKEDPEG--LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
+ N + + ++ + Q H ++ + N+K
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV---WYFSISNVKL-- 259
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318
S ++ L + Q+ ++ F S + N++ S
Sbjct: 260 -QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT------ 312
Query: 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIG-- 376
M + + S L F N + + +L+ +L+ L L NQL +
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQL-KELSKIAEMT 370
Query: 377 -NLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSG----------------- 417
+ +L L + QN + +L L+ N +
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHS 430
Query: 418 ----KIPSTLGNLSSLSEIVLSNNNLSGV 442
IP + L +L E+ +++N L V
Sbjct: 431 NKIKSIPKQVVKLEALQELNVASNQLKSV 459
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 3e-09
Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 21/280 (7%)
Query: 74 SLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFR---LEALFLANNSLVGKIPANLSYC 130
S+ + L + L + +L + ++N L G++
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270
Query: 131 S-----RLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVS 185
S L++ + + + + + + + ++ +
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330
Query: 186 LSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSIC---NLSFLVNFSVSQNQIHGS 242
S N + ++ G L EL++L + +N L ++ + L +SQN +
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYD 389
Query: 243 LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNL 302
+L + N T +I L +++V+ + +N ++ L
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL 446
Query: 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQF 342
L + S+ L S + L+ + N +
Sbjct: 447 QELNVASNQLKSVPD------GIFDRLTSLQKIWLHTNPW 480
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 57/362 (15%), Positives = 121/362 (33%), Gaps = 47/362 (12%)
Query: 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138
L+ L ++ +++I +L L L +N++ +LS + LT L+
Sbjct: 38 EEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLAC 92
Query: 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDS 198
NKL ++ L KL L+ N LT + L ++ + N+ I
Sbjct: 93 DSNKLT-NLDVTP--LTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID-- 143
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
+ +L L +N + + L S N+I L L
Sbjct: 144 VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKIT-ELDVS---QNKLLNRLN 197
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318
D N T + L+ +L + ++N + ++ + L++ + L
Sbjct: 198 CDTNNITK---LDLNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLTE---- 247
Query: 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378
++ SKL L + + +L+ Q+++ + +
Sbjct: 248 -----LDVSTLSKLTTLHCIQTDLLEI------DLTHNTQLIYFQAEGCRKIKELDVTHN 296
Query: 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNN 438
LYLL + I + + + L L + ++ + + + L + N +
Sbjct: 297 TQLYLLDCQAAG-ITELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAH 350
Query: 439 LS 440
+
Sbjct: 351 IQ 352
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 3e-19
Identities = 55/382 (14%), Positives = 123/382 (32%), Gaps = 49/382 (12%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
LD + +++ ++ I L+ L ++ N I + + L L +N L
Sbjct: 47 LDCHNSSIT-DMTG-IEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTNL- 100
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL 183
+++ ++LT L+ NKL + L L+ +N LT + + T L
Sbjct: 101 --DVTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTE 152
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243
+ N + + +L +L N ++ + L + N I L
Sbjct: 153 LDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KL 206
Query: 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303
L F N T + ++ ++L + N + ++ + L+
Sbjct: 207 DLN---QNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT---ELDVSTLSKLT 257
Query: 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLG 363
L ++L L + ++L + L +T+ + L +L
Sbjct: 258 TLHCIQTDLLE---------IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQ-LYLLDCQ 305
Query: 364 FNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTL 423
+ + + L L + + + + + L+ L H S +
Sbjct: 306 AAGI-TELD--LSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHIQ-DFSS-V 357
Query: 424 GNLSSLSEIVLSNNNLSGVIPS 445
G + +L+ + +
Sbjct: 358 GKIPALNNNFEAEGQTITMPKE 379
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 1e-18
Identities = 56/363 (15%), Positives = 104/363 (28%), Gaps = 44/363 (12%)
Query: 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138
+ + L + N + + L +L L N L ++S LT L+
Sbjct: 81 LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLNC 134
Query: 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDS 198
+N L + +L L H N + T L + S+N
Sbjct: 135 ARNTLT---EIDVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITE---LD 186
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
+ Q K L L NN++ + L S N++ + L +F
Sbjct: 187 VSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EIDVT---PLTQLTYFD 239
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318
N T + +S SKL + ++ L + +
Sbjct: 240 CSVNPLT---ELDVSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRKIK---- 289
Query: 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378
+ + ++L +L + ++ L L+L +L + + +
Sbjct: 290 ----ELDVTHNTQLYLLDCQAAGITEL---DLSQNPK-LVYLYLNNTELT-ELD--VSHN 338
Query: 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNN 438
L L+ I +GK+ L TL N S + +
Sbjct: 339 TKLKSLSCVNAH-IQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396
Query: 439 LSG 441
G
Sbjct: 397 QFG 399
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-17
Identities = 50/332 (15%), Positives = 103/332 (31%), Gaps = 41/332 (12%)
Query: 109 LEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168
+ A + + + LT L + + E L L L NN+T
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE--KLTGLTKLICTSNNIT 77
Query: 169 GGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSF 228
+ L T L ++ N N+ + L +L L N L+ K+ S
Sbjct: 78 ---TLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDVS--QNPL 128
Query: 229 LVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288
L + ++N + + + L N + ++ ++L + + N
Sbjct: 129 LTYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI 182
Query: 289 SGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPH 348
+ ++ K L+ L ++N+ + L +L L N+ +
Sbjct: 183 T---ELDVSQNKLLNRLNCDTNNITKLD---------LNQNIQLTFLDCSSNKLTEI--- 227
Query: 349 SITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGL 408
+T L+ L N L + + L L L Q + I + L
Sbjct: 228 DVTPLTQ-LTYFDCSVNPL-TELD--VSTLSKLTTLHCIQTD-LLEID--LTHNTQLIYF 280
Query: 409 DFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
G ++ + + + L + ++
Sbjct: 281 QAEGCRKIKELD--VTHNTQLYLLDCQAAGIT 310
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 62/367 (16%), Positives = 122/367 (33%), Gaps = 59/367 (16%)
Query: 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138
+ L +N NT+ EI +L L N + K+ ++ ++LT L
Sbjct: 123 VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC 177
Query: 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDS 198
NK+ + L L+ NN+T L L + S N I
Sbjct: 178 SFNKITE---LDVSQNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLT-EID-- 228
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
+ L +L VN L+ ++ S LS L Q + + + L +FQ
Sbjct: 229 VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EIDL---THNTQLIYFQ 281
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318
+ + +++ ++L ++ + ++ L +L L ++ L
Sbjct: 282 AEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTEL--- 333
Query: 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378
+++ +KL+ LS + + + + L F Q ++P
Sbjct: 334 ------DVSHNTKLKSLSCVNAHIQDFSS--VGKIPA-LNNNFEAEGQTI-TMPKETLTN 383
Query: 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNN 438
+L + ++ LD GN + I G + + ++ N
Sbjct: 384 NSLTI------------------AVSPDLLDQFGNPMN--IEPGDGGVYDQATNTITWEN 423
Query: 439 LSGVIPS 445
LS P+
Sbjct: 424 LSTDNPA 430
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 8e-12
Identities = 48/265 (18%), Positives = 93/265 (35%), Gaps = 33/265 (12%)
Query: 181 LELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240
+ + S QL L SL ++++ I L+ L + N I
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNI- 76
Query: 241 GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMK 300
+L NL + D N T + ++ +KL + N + ++
Sbjct: 77 TTLDLS---QNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNP 127
Query: 301 NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL 360
L++L + L +++ ++L L N+ L +T + QL L
Sbjct: 128 LLTYLNCARNTLTE---------IDVSHNTQLTELDCHLNKKITKLD--VTPQT-QLTTL 175
Query: 361 FLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP 420
FN++ + + L L + N I + + + + L LD N + +I
Sbjct: 176 DCSFNKIT-ELD--VSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLT-EID 228
Query: 421 STLGNLSSLSEIVLSNNNLSGVIPS 445
+ L+ L+ S N L+ + S
Sbjct: 229 --VTPLTQLTYFDCSVNPLTELDVS 251
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 11/148 (7%)
Query: 76 SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTV 135
+ + + L ++ I E+ + +L L+L N L ++ +S+ ++L
Sbjct: 290 ELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKS 343
Query: 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGN- 194
LS + + L + L N + VS GN
Sbjct: 344 LSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401
Query: 195 --IPDSLGQLKELKSLAIGVNNLSGKIP 220
I G + + + I NLS P
Sbjct: 402 MNIEPGDGGVYDQATNTITWENLSTDNP 429
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 5e-19
Identities = 53/291 (18%), Positives = 92/291 (31%), Gaps = 63/291 (21%)
Query: 154 LYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVN 213
K ++N + + L+ + ++PD+L ++ L I N
Sbjct: 36 WEKQALPGENRNEAVS--LLKECLINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQN 90
Query: 214 NLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLS 273
L +P +L +L N++ +LP +LK +D N T +P +
Sbjct: 91 ALI-SLPELPASLEYL---DACDNRLS-TLPELPA----SLKHLDVDNNQLT-MLPELPA 140
Query: 274 NASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLR 333
LE I NN L+ L + L
Sbjct: 141 L---LEYINADNN--------------QLTML--------------------PELPTSLE 163
Query: 334 VLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNL----YLLAMEQN 389
VLS NQ LP +L + L + N L S+P+ + +N
Sbjct: 164 VLSVRNNQLT-FLPELPESL----EALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCREN 217
Query: 390 QFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
+ I IP+ + L + N S +I +L ++ + S
Sbjct: 218 R-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 14/139 (10%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
++ + L+ L +L +++ +N + +P LEAL ++ N L +
Sbjct: 145 INADNNQLT-MLPELPTSL---EVLSVRNNQLT-FLPEL---PESLEALDVSTNLLES-L 195
Query: 124 PANLSYCSRLT----VLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLT 179
PA +N++ IP + L + L N L+ I L T
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254
Query: 180 FLELVSLSYNSFEGNIPDS 198
F +
Sbjct: 255 AQPDYHGPRIYFSMSDGQQ 273
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 56/288 (19%), Positives = 106/288 (36%), Gaps = 35/288 (12%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLG 139
NL L + L++N I +I P F L +LE L+L+ N L ++P + L L +
Sbjct: 74 NLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129
Query: 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSL 199
+N++ F L ++ + L N L + +F+G
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLK--------------SSGIENGAFQG------ 169
Query: 200 GQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQI 259
+K+L + I N++ IP + L + N+I + + NL +
Sbjct: 170 --MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGL 223
Query: 260 DQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDE 319
N + SL+N L + + NN K K + + L ++N+ + S++
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282
Query: 320 MGFINSLANCSKLRVLSFGRN--QFRGVLPHSITNLSSQLQVLFLGFN 365
+ +S N Q+ + P + + + LG
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV-RAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 66/333 (19%), Positives = 120/333 (36%), Gaps = 60/333 (18%)
Query: 109 LEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168
L + ++ L K+P +L +L L NK+ +F L L L L N ++
Sbjct: 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 169 GGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI-CNLS 227
L LE + LS N + +P+ + K L+ L + N ++ K+ S+ L+
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLN 145
Query: 228 FLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNS 287
++ + N + K I+ F G KL I+IA+ +
Sbjct: 146 QMIVVELGTNPL---------------KSSGIENGAFQGM--------KKLSYIRIADTN 182
Query: 288 FSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLP 347
+ ++ G +L+ L L + + ++ SL + L L N V
Sbjct: 183 IT---TIPQGLPPSLTELHLDGNKITKVDA------ASLKGLNNLAKLGLSFNSISAVDN 233
Query: 348 HSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQG 407
S+ N L+ L L N+L +P G+ + + ++ + N I I
Sbjct: 234 GSLANTPH-LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN-ISAIGSN--------- 281
Query: 408 LDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
P +S S + L +N +
Sbjct: 282 --------DFCPPGYNTKKASYSGVSLFSNPVQ 306
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 5e-14
Identities = 49/266 (18%), Positives = 91/266 (34%), Gaps = 22/266 (8%)
Query: 180 FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPP-SICNLSFLVNFSVSQNQ 238
L +V S E +P L + L + N ++ +I NL L + N+
Sbjct: 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87
Query: 239 IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298
I + L+ + +N +P + L+ +++ N + F G
Sbjct: 88 IS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNG 143
Query: 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQ 358
+ + + L ++ L S + F KL + + L L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAF----QGMKKLSYIRIADTNITTIPQ----GLPPSLT 195
Query: 359 VLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFS 416
L L N++ + + L NL L + N I + +L+ L N
Sbjct: 196 ELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 417 GKIPSTLGNLSSLSEIVLSNNNLSGV 442
K+P L + + + L NNN+S +
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAI 278
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 1e-17
Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 14/249 (5%)
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT-GGISPF-LGNLTF 180
+P + S T L L NKL F L +L LSL N L+ G T
Sbjct: 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79
Query: 181 LELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQI 239
L+ + LS+N + + L++L+ L +NL S+ +L L+ +S
Sbjct: 80 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSI-PVSLSNASKLEVIQIANNSFSGKFSVNFGG 298
+ + +L+ ++ N F + P + L + ++ F
Sbjct: 139 R-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQ 358
+ +L L + +N S ++ + L+VL + N + + S L
Sbjct: 198 LSSLQVLNMSHNNFFSLDT------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251
Query: 359 VLFLGFNQL 367
L L N
Sbjct: 252 FLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 8e-15
Identities = 50/263 (19%), Positives = 95/263 (36%), Gaps = 19/263 (7%)
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQI-HG 241
+ + ++P + L + N L +P + L+ L S+S N +
Sbjct: 12 IRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVN-FGGMK 300
S +LK+ + N ++ + +LE + +++ + F ++
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126
Query: 301 NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL 360
NL +L + ++ + S L VL N F+ I L L
Sbjct: 127 NLIYLDISHTHTRVAFN------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
Query: 361 FLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGK 418
L QL + +L +L +L M N ++ L +LQ LD+ NH
Sbjct: 181 DLSQCQL-EQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Query: 419 IPSTLGNL-SSLSEIVLSNNNLS 440
L + SSL+ + L+ N+ +
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 3e-14
Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 9/231 (3%)
Query: 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSL--VGKIPANLSYCSRLTVLSLGQNK 142
+ L N +Q F +L +L L L++N L G + + L L L N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 143 LVGSIPFEFVFLYKLKGLSLHKNNLTGGISP--FLGNLTFLELVSLSYNSFEGNIPDSLG 200
++ ++ F+ L +L+ L +NL +S +L L + +S+
Sbjct: 90 VI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 201 QLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQI 259
L L+ L + N+ P I L L +SQ Q+ L + +L+ +
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNM 206
Query: 260 DQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGM-KNLSHLILQS 309
N F + L+V+ + N +L+ L L
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 4e-14
Identities = 39/185 (21%), Positives = 64/185 (34%), Gaps = 5/185 (2%)
Query: 81 NLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLG 139
+ L+ ++L N + + F L +LE L +++L ++ L L +
Sbjct: 76 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134
Query: 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISP-FLGNLTFLELVSLSYNSFEGNIPDS 198
+ F L L+ L + N+ P L L + LS E P +
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFF 257
L L+ L + NN + L+ L S N I S L +L F
Sbjct: 195 FNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253
Query: 258 QIDQN 262
+ QN
Sbjct: 254 NLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 8e-14
Identities = 51/228 (22%), Positives = 77/228 (33%), Gaps = 19/228 (8%)
Query: 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFT--GSIPVSLSNAS 276
IP S L N++ L + N + G S +
Sbjct: 26 IPSSATRLEL------ESNKLQSLPHGVFD-KLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 277 KLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLS 336
L+ + ++ N S NF G++ L HL Q SNL M + + L L
Sbjct: 79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-----MSEFSVFLSLRNLIYLD 132
Query: 337 FGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTI 395
R LSS L+VL + N + I L NL L + Q Q + +
Sbjct: 133 ISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQL 190
Query: 396 PQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
L +LQ L+ N+F L+SL + S N++
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 9e-11
Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 9/173 (5%)
Query: 74 SLSPHIGNLSFLREINLMDNTIQGEIPPE--FGRLFRLEALFLANNSLVGKIPANLSYCS 131
++S + L L ++ + ++ ++ F L L L +++ + S
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 132 RLTVLSLGQNKLVGSIPFE-FVFLYKLKGLSLHKNNLTGGISP-FLGNLTFLELVSLSYN 189
L VL + N + + F L L L L + L +SP +L+ L+++++S+N
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN 209
Query: 190 SFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICN--LSFLVNFSVSQNQIH 240
+F L L+ L +N++ S L +++QN
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 13/149 (8%)
Query: 301 NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQ--FRGVLPHSITNLSSQLQ 358
+ + L L+S+ L S ++L LS N F+G S + L+
Sbjct: 29 SATRLELESNKLQSLPH------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLK 81
Query: 359 VLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEM--GKLLNLQGLDFGGNHFS 416
L L FN + ++ S L L L + + + + + L NL LD H
Sbjct: 82 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTR 139
Query: 417 GKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
LSSL + ++ N+
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLP 168
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 8/133 (6%)
Query: 64 LDLMSKALSGSLSPHI-GNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVG 121
LD+ I LS L + + N+ Q P+ F L L L L+ L
Sbjct: 131 LDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE- 188
Query: 122 KIPANLSYC-SRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISP--FLGNL 178
++ S L VL++ N F + L L+ L N++
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFP 247
Query: 179 TFLELVSLSYNSF 191
+ L ++L+ N F
Sbjct: 248 SSLAFLNLTQNDF 260
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 3e-17
Identities = 62/343 (18%), Positives = 106/343 (30%), Gaps = 50/343 (14%)
Query: 109 LEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168
+ + S C R + L SIP +K L L N +T
Sbjct: 9 WVLGVIISLSKEESSNQASLSCDRNGICKGSSGSL-NSIPSGL--TEAVKSLDLSNNRIT 65
Query: 169 GGISPFLGNLTFLELVSLSYN---SFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI-C 224
+ L L+ + L+ N + E + SLG L+ L + N LS + S
Sbjct: 66 YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD---LSYNYLS-NLSSSWFK 121
Query: 225 NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIA 284
LS L ++ N + L + L+ ++ I
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD------------ 169
Query: 285 NNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG 344
F G+ L L + +S+L S E SL + + L Q
Sbjct: 170 -----------FAGLTFLEELEIDASDLQSYEP------KSLKSIQNVSHLILHMKQHIL 212
Query: 345 VLPHSITNLSSQLQVLFLGFNQLYG----SIPSGI----GNLVNLYLLAMEQNQFIGTIP 396
+L + SS ++ L L L + +G + + + +
Sbjct: 213 LLEIFVDVTSS-VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVM 270
Query: 397 QEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNL 439
+ + ++ L L+F N L+SL +I L N
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 55/287 (19%), Positives = 100/287 (34%), Gaps = 35/287 (12%)
Query: 85 LREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLGQNK 142
++ ++L +N I I R L+AL L +N + I + S L L L N
Sbjct: 54 VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111
Query: 143 LVGSIPFE-FVFLYKLKGLSLHKNNLTGGISP--FLGNLTFLELVSLSYNSFEGNIPD-S 198
L ++ F L L L+L N + +LT L+++ + I
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
L L+ L I ++L P S+ ++ + + + Q L +++ +
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE 228
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318
+ LS +G+ + + ++ + +L
Sbjct: 229 LRDTDLDTFHFSELS---------------TGETN-SLIKKFTFRNVKITDESLFQ---- 268
Query: 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFN 365
+ L S L L F RNQ + V L+S LQ ++L N
Sbjct: 269 ---VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS-LQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 8e-10
Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 11/176 (6%)
Query: 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326
SIP L+ ++ + ++NN + + + NL L+L S+ + + E +S
Sbjct: 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE------DSF 96
Query: 327 ANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLA 385
++ L L N + LSS L L L N + + +L L +L
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILR 155
Query: 386 MEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
+ I ++ L L+ L+ + P +L ++ ++S ++L
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 9/194 (4%)
Query: 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSS 310
+K + N T L L+ + + +N + +F + +L HL L +
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 311 NLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGS 370
L + S S L L+ N ++ + S+ + ++LQ+L +G +
Sbjct: 111 YLSNLSSS------WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164
Query: 371 IPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSS 428
I L L L ++ + + + + + N+ L + + SS
Sbjct: 165 IQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223
Query: 429 LSEIVLSNNNLSGV 442
+ + L + +L
Sbjct: 224 VECLELRDTDLDTF 237
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 23/160 (14%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSL 138
L+FL E+ + + +Q P+ + + L L + + S + L L
Sbjct: 172 GLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229
Query: 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDS 198
L + H + L+ G + L V ++ S +
Sbjct: 230 RDTDLD----------------TFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKL 272
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQN 237
L Q+ L L N L +P I L+ L + N
Sbjct: 273 LNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 9e-17
Identities = 66/309 (21%), Positives = 107/309 (34%), Gaps = 66/309 (21%)
Query: 108 RLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNL 167
+ + L ++P + S L+L +N + F L+ L+ L L +N++
Sbjct: 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 168 TGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI-CNL 226
+ +F G L L +L + N L+ IP L
Sbjct: 112 R----------------QIEVGAFNG--------LASLNTLELFDNWLT-VIPSGAFEYL 146
Query: 227 SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN 286
S L + N I S+PS P+L + L KLE I
Sbjct: 147 SKLRELWLRNNPIE-SIPSYAFNRVPSLMR-------------LDLGELKKLEYIS--EG 190
Query: 287 SFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346
+F G+ NL +L L N+ + +L L L N F +
Sbjct: 191 AFE--------GLFNLKYLNLGMCNIKD--------MPNLTPLVGLEELEMSGNHFPEIR 234
Query: 347 PHSITNLSSQLQVLFLGFNQLYGSIPSG-IGNLVNLYLLAMEQNQFIGTIPQEM-GKLLN 404
P S LSS L+ L++ +Q+ I L +L L + N + ++P ++ L
Sbjct: 235 PGSFHGLSS-LKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRY 291
Query: 405 LQGLDFGGN 413
L L N
Sbjct: 292 LVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 14/231 (6%)
Query: 85 LREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSLGQNK 142
R +NLM+N IQ I + F L LE L L NS+ +I + + L L L N
Sbjct: 77 TRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNW 134
Query: 143 LVGSIPFE-FVFLYKLKGLSLHKNNLT---GGISPFLGNLTFLELVSLSYNSFEGNIPDS 198
L IP F +L KL+ L L N + + +L L+L E +
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL--GELKKLEYISEGA 191
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
L LK L +G+ N+ P++ L L +S N + +LK
Sbjct: 192 FEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLW 248
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQS 309
+ + + + + L + +A+N+ S F ++ L L L
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 14/214 (6%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSL 138
+L L + L N+I+ +I F L L L L +N L IP+ Y S+L L L
Sbjct: 97 HLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWL 154
Query: 139 GQNKLVGSIPFE-FVFLYKLKGLSLHKNNLTGGISPF-LGNLTFLELVSLSYNSFEGNIP 196
N + SIP F + L L L + IS L L+ ++L + + ++P
Sbjct: 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP 212
Query: 197 DSLGQLKELKSLAIGVNNLSGKIPP-SICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255
+ L L L+ L + N+ +I P S LS L V +Q+ + +L
Sbjct: 213 N-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLV 269
Query: 256 FFQIDQNFFTGSIPVS-LSNASKLEVIQIANNSF 288
+ N + S+P + L + + +N +
Sbjct: 270 ELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 14/180 (7%)
Query: 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326
+P + S + + N+ + F + +L L L +++ E +
Sbjct: 68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV------GAF 119
Query: 327 ANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLA 385
+ L L N + + LS L+ L+L N + SIPS + +L L
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSK-LRELWLRNNPI-ESIPSYAFNRVPSLMRLD 177
Query: 386 MEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
+ + + + I + L NL+ L+ G + +P L L L E+ +S N+ + P
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRP 235
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 9e-13
Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 26/235 (11%)
Query: 213 NNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPV- 270
LS ++P I N +L ++ +N I + + + +L+ Q+ +N I V
Sbjct: 64 RGLS-EVPQGIPSNTRYL---NLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVG 117
Query: 271 SLSNASKLEVIQIANNSFSGKFSVN---FGGMKNLSHLILQSSNLGSGESDEMGFINSLA 327
+ + + L +++ +N + + F + L L L+++ + S S +
Sbjct: 118 AFNGLASLNTLELFDNWLT---VIPSGAFEYLSKLRELWLRNNPIESIPSY------AFN 168
Query: 328 NCSKLRVLSFGR-NQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAM 386
L L G + + + L + L+ L LG + +P+ + LV L L M
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFN-LKYLNLGMCNIK-DMPN-LTPLVGLEELEM 225
Query: 387 EQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
N I L +L+ L + S + L+SL E+ L++NNLS
Sbjct: 226 SGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 12/194 (6%)
Query: 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSS 310
N ++ + +N + + LEV+Q+ NS F G+ +L+ L L +
Sbjct: 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133
Query: 311 NLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLG-FNQLYG 369
L S + SKLR L N + ++ + L L LG +L
Sbjct: 134 WLTVIPSG------AFEYLSKLRELWLRNNPIESIPSYAFNRVP-SLMRLDLGELKKL-E 185
Query: 370 SIPSGI-GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSS 428
I G L NL L + I +P + L+ L+ L+ GNHF P + LSS
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 429 LSEIVLSNNNLSGV 442
L ++ + N+ +S +
Sbjct: 244 LKKLWVMNSQVSLI 257
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 6e-08
Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 332 LRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQ 390
R L+ N + + + +L L+VL LG N + I G L +L L + N
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNW 134
Query: 391 FIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
+ IP L L+ L N + SL + L I
Sbjct: 135 -LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLT 134
P++ L L E+ + N EI P F L L+ L++ N+ + I N + L
Sbjct: 212 PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLV 269
Query: 135 VLSLGQNKLVGSIPFE-FVFLYKLKGLSLHKNNL 167
L+L N L S+P + F L L L LH N
Sbjct: 270 ELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 81.3 bits (200), Expect = 1e-16
Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 30/244 (12%)
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGL-NFPNLKFF 257
E + +++ + L+ + + + I S G+ PN+
Sbjct: 17 DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK----SVQGIQYLPNVTKL 70
Query: 258 QIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGES 317
++ N T I L+N L + + N S + +K L L L+ + +
Sbjct: 71 FLNGNKLT-DIK-PLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISD--- 123
Query: 318 DEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLS--SQLQVLFLGFNQLYGSIPSGI 375
IN L + +L L G N+ IT LS ++L L L NQ+ S +
Sbjct: 124 -----INGLVHLPQLESLYLGNNKI-----TDITVLSRLTKLDTLSLEDNQI--SDIVPL 171
Query: 376 GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLS 435
L L L + +N I + + + L NL L+ K + NL + + +
Sbjct: 172 AGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229
Query: 436 NNNL 439
+ +L
Sbjct: 230 DGSL 233
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 1e-14
Identities = 59/302 (19%), Positives = 105/302 (34%), Gaps = 53/302 (17%)
Query: 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLV 144
+ E + I+ +I P L S+ + + + + + + +
Sbjct: 1 MGETITVSTPIK-QIFP-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56
Query: 145 GSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPD--SLGQL 202
S+ +L + L L+ N LT I P L NL L + L N I D SL L
Sbjct: 57 -SVQG-IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDEN----KIKDLSSLKDL 108
Query: 203 KELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQN 262
K+LKSL++ N +S I + +L L + + N+I
Sbjct: 109 KKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKI----------------------- 143
Query: 263 FFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGF 322
+ LS +KL+ + + +N S G+ L +L L +++
Sbjct: 144 ----TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISD-------- 189
Query: 323 INSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLY 382
+ +LA L VL + + +NL V + + I S G+
Sbjct: 190 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249
Query: 383 LL 384
+
Sbjct: 250 VK 251
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 6e-14
Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 18/243 (7%)
Query: 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138
+ NL L + L +N I+ ++ L +L++L L +N + I L + +L L L
Sbjct: 83 LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYL 138
Query: 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPD- 197
G NK+ L KL LSL N ++ I P L LT L+ + LS N +I D
Sbjct: 139 GNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKN----HISDL 190
Query: 198 -SLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKF 256
+L LK L L + K NL + + + + +
Sbjct: 191 RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS---DDGDYEK 247
Query: 257 FQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGE 316
+ + + VS + I A F G+ + + +S+ + + E
Sbjct: 248 PNVKWHLPEFTNEVSFIFYQPVT-IGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVE 306
Query: 317 SDE 319
+
Sbjct: 307 AGT 309
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 5e-13
Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 25/193 (12%)
Query: 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQS 309
F + + T ++ + + ++ I N+ + N++ L L
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNG 74
Query: 310 SNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS--QLQVLFLGFNQL 367
+ L I L N L L N+ + +++L +L+ L L N +
Sbjct: 75 NKLTD--------IKPLTNLKNLGWLFLDENKIK-----DLSSLKDLKKLKSLSLEHNGI 121
Query: 368 YGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLS 427
S +G+ +L L L + N+ I I + +L L L N S I L L+
Sbjct: 122 --SDINGLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQIS-DIVP-LAGLT 175
Query: 428 SLSEIVLSNNNLS 440
L + LS N++S
Sbjct: 176 KLQNLYLSKNHIS 188
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 1e-12
Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 23/171 (13%)
Query: 272 LSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSK 331
++ + S + +V + ++ +I +S++ S + +
Sbjct: 17 DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--------VQGIQYLPN 66
Query: 332 LRVLSFGRNQFRGVLPHSITNLSS--QLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQN 389
+ L N+ I L++ L LFL N++ S + +L L L++E N
Sbjct: 67 VTKLFLNGNKLT-----DIKPLTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEHN 119
Query: 390 QFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
I I + L L+ L G N + + L L+ L + L +N +S
Sbjct: 120 G-ISDI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 166
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 1e-09
Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 21/152 (13%)
Query: 295 NFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLS 354
L+ ++ + + + + + + S+ +
Sbjct: 16 PDDAFAETIKDNLKKKSVTD--------AVTQNELNSIDQIIANNSDIK-----SVQGIQ 62
Query: 355 S--QLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGG 412
+ LFL N+L I + NL NL L +++N+ I + + L L+ L
Sbjct: 63 YLPNVTKLFLNGNKL-TDI-KPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEH 118
Query: 413 NHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
N S I + L +L L + L NN ++ +
Sbjct: 119 NGIS-DI-NGLVHLPQLESLYLGNNKITDITV 148
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 4e-06
Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 36/166 (21%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVL 136
+ +L L + L +N I +I LS ++L L
Sbjct: 125 NGLVHLPQLESLYLGNNKIT-DITV-------------------------LSRLTKLDTL 158
Query: 137 SLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIP 196
SL N++ I L KL+ L L KN+++ + L L L+++ L
Sbjct: 159 SLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPI 214
Query: 197 DSLGQLKELKSLAIGVNNLSGKI--PPSICNLSFLVNFSVSQNQIH 240
+ L ++ N G + P I + +V +
Sbjct: 215 NHQSNLVVPNTV----KNTDGSLVTPEIISDDGDYEKPNVKWHLPE 256
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 6e-16
Identities = 56/288 (19%), Positives = 99/288 (34%), Gaps = 18/288 (6%)
Query: 85 LREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSLGQNK 142
++L +N I E+ + F L L AL L NN + KI S +L L + +N
Sbjct: 56 TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113
Query: 143 LVGSIPFEFVFLYKLKGLSLHKNNLTGGISPF-LGNLTFLELVSLSYNSF-EGNIPDSLG 200
LV IP L L +H N + + L + + + N
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 201 QLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQID 260
+L L I L+ IP + L + N+I ++ L + L +
Sbjct: 170 DGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLG 225
Query: 261 QNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEM 320
N SLS L + + NN S + +K L + L ++N+ ++
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284
Query: 321 GFINSLANCSKLRVLSFGRNQ--FRGVLPHSITNLSSQLQVLFLGFNQ 366
+ + +S N + V P + ++ + G +
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD-RLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 6e-15
Identities = 67/334 (20%), Positives = 115/334 (34%), Gaps = 63/334 (18%)
Query: 109 LEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168
L + ++ L +P +S T+L L N + +F L L L L N ++
Sbjct: 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 169 GGISPF-LGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSIC-NL 226
I L L+ + +S N IP +L L L I N + K+P + L
Sbjct: 92 K-IHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGL 146
Query: 227 SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN 286
+ + N + S + F G KL ++I+
Sbjct: 147 RNMNCIEMGGNPLENS---------------GFEPGAFDGL---------KLNYLRISEA 182
Query: 287 SFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346
+ + + L+ L L + + + E L SKL L G NQ R +
Sbjct: 183 KLT---GIPKDLPETLNELHLDHNKIQAIEL------EDLLRYSKLYRLGLGHNQIRMIE 233
Query: 347 PHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQ 406
S++ L + L+ L L N+L +P+G+ +L L ++ + N I +
Sbjct: 234 NGSLSFLPT-LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVND------- 283
Query: 407 GLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
F + + I L NN +
Sbjct: 284 --------FCPVGFGV--KRAYYNGISLFNNPVP 307
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 6e-13
Identities = 62/292 (21%), Positives = 102/292 (34%), Gaps = 53/292 (18%)
Query: 157 LKGLSLHKNNLT---GGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVN 213
L+ + L ISP + T L L N D L+ L +L + N
Sbjct: 35 LRVVQCSDLGLKAVPKEISP---DTTLL---DLQNNDISELRKDDFKGLQHLYALVLVNN 88
Query: 214 NLSGKIPP-SICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSL 272
+S KI + L L +S+N + +P L +L +I N +P +
Sbjct: 89 KIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL---PSSLVELRIHDNRIR-KVPKGV 142
Query: 273 SNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKL 332
F G++N++ + + + L + + F KL
Sbjct: 143 -----------------------FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-----KL 174
Query: 333 RVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQF 391
L + G+ +L L L L N++ +I LY L + NQ
Sbjct: 175 NYLRISEAKLTGIPK----DLPETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQ- 228
Query: 392 IGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
I I L L+ L N S ++P+ L +L L + L NN++ V
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 1e-15
Identities = 67/400 (16%), Positives = 120/400 (30%), Gaps = 38/400 (9%)
Query: 64 LDLMSKALSGSLSPH-IGNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVG 121
L L ++S L I LS LR + L N I+ + F LE L +++N L
Sbjct: 57 LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN 114
Query: 122 KIPANLSYCSRLTVLSLGQNKLVGSIPF--EFVFLYKLKGLSLHKNNLTGGISPFLGNLT 179
++ L L L N +P EF L KL L L L +
Sbjct: 115 ISCCPMA---SLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVA 167
Query: 180 FLELV----SLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVS 235
L L L +G +SL L + + S +++ L + +S
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226
Query: 236 QNQI---------HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN 286
++ G N+ I+ + +E + I N
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286
Query: 287 SFSGKFSVNFGGMKNLSHLILQSSNLGSGE--SDEMGFINSLANCSKLRVLSFGRNQFRG 344
+ + + + L ++ + + + A + + +
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE---MNIKMLSISDTP- 342
Query: 345 VLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLN 404
+ S L N S+ G L L L +++N + + N
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKN 401
Query: 405 LQGLDFGGNHF----SGKIPSTLGNLSSLSEIVLSNNNLS 440
+ L+ S T S+ + LS+N L+
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 59/367 (16%), Positives = 121/367 (32%), Gaps = 20/367 (5%)
Query: 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLGQNKL 143
+ ++L N+I P+ L L L L++N + + ++ + L L + N+L
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 144 VGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQL 202
+I + L+ L L N+ + GNLT L + LS F + L
Sbjct: 113 Q-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169
Query: 203 KELKS-LAIGVNNLSGKIPPSICNLSFLV------NFSVSQNQIHGSLPSCLGLNFPNLK 255
L + ++ G S+ + V S+ Q++ S+ + L N+K
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229
Query: 256 FFQIDQNFFTGSIPVSL--SNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLG 313
+ + + + I F + + +L + + +
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI- 288
Query: 314 SGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPS 373
+ D F S L + F ++ ++ +++ + L + I
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDT-PFIHM 346
Query: 374 GI-GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEI 432
+ + L QN F ++ Q L LQ L N ++S +
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSL 405
Query: 433 VLSNNNL 439
+ +L
Sbjct: 406 ETLDVSL 412
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 4e-14
Identities = 58/395 (14%), Positives = 117/395 (29%), Gaps = 40/395 (10%)
Query: 80 GNLSFLREINLMDNTIQGEIPP--EFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLS 137
++ LR ++L N +P EFG L +L L L+ +++ +L
Sbjct: 118 CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176
Query: 138 LGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEG---- 193
+ + E + + L L + + ++ L + LS
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236
Query: 194 ---NIPDSLGQLKELKSLAIGVNNLSGKIPPSICNL---SFLVNFSVSQNQIHGSL---- 243
L + L ++ + + K + + ++ I +
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296
Query: 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303
+ +L + F S S +++ + ++ + V + +
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356
Query: 304 HLILQSSNLGSGESDEMGFINSL--------------------ANCSKLRVLSFGRNQFR 343
L + + L N S L L N
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 344 GVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLL 403
+ + VL L N L GS+ + + +L + N+ I +IP+++ L
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNR-IMSIPKDVTHLQ 473
Query: 404 NLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNN 438
LQ L+ N L+SL I L +N
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 3e-12
Identities = 68/404 (16%), Positives = 126/404 (31%), Gaps = 55/404 (13%)
Query: 81 NLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSL-VGKIPANLSYCSRLTVLSLG 139
L +++ N +Q I + L L L+ N V + ++LT L L
Sbjct: 98 FNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
Query: 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPF----LGNLTFLELVSLSYNSFEGNI 195
K + V L + L + + N T L LV + F +
Sbjct: 155 AAKF-RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV 213
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIPPS----ICNLSFLVNFSVSQNQIHGSLPSCLGLNF 251
S+ L L+ I +N+ + + + + L+N ++ + L F
Sbjct: 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273
Query: 252 --PNLKFFQIDQNFFTGSIPVSLSNASK-----LEVIQIANNSFSGKFSVNFGGMKNLSH 304
+++ I T I S+ L + + N F + ++
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333
Query: 305 LILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGF 364
+L S+ M S ++ L+F +N F + + L +LQ L L
Sbjct: 334 KMLSISDTPFIH---MVCPPSPSS---FTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQR 386
Query: 365 NQLYGSIPSGIGNLVNLYLLAMEQNQ----------FIGTIPQEMGKL------------ 402
N L + N+ L + + L
Sbjct: 387 NGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445
Query: 403 ----LNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
++ LD N IP + +L +L E+ +++N L V
Sbjct: 446 RCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV 488
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 4e-08
Identities = 52/360 (14%), Positives = 108/360 (30%), Gaps = 82/360 (22%)
Query: 38 NSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNL---SFLREINLMDNT 94
ND ++ R ++ + L + S + + +N+ + T
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287
Query: 95 IQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFL 154
I I E + +L L + + + S +
Sbjct: 288 ITERID--------REEFTYSETAL-----------KSLMIEHVKNQVFLFSKEALYSVF 328
Query: 155 YKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNN 214
++ L ++ + + ++ + N F ++ LK L++L + N
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388
Query: 215 LSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSN 274
L + + + N
Sbjct: 389 LK-------------------------NFF----------------------KVALMTKN 401
Query: 275 ASKLEVIQIANNSF-SGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLR 333
S LE + ++ NS S + +++ L L S+ L + K++
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--------PKVK 453
Query: 334 VLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFI 392
VL N+ +P +T+L LQ L + NQL S+P G+ L +L + + N +
Sbjct: 454 VLDLHNNRIM-SIPKDVTHL-QALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPWD 510
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 1e-07
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 330 SKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQ 388
+ + LS +N + I+ LS +L+VL L N++ S+ + +L L +
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSH 109
Query: 389 NQFIGTIPQEMGKLLNLQGLDFGGNHF-SGKIPSTLGNLSSLSEIVLSNNNLSGV 442
N+ + I + +L+ LD N F + GNL+ L+ + LS +
Sbjct: 110 NR-LQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 14/234 (5%)
Query: 85 LREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSLGQNK 142
R +NL +N IQ I F L LE L L+ N + I + + L L L N+
Sbjct: 66 TRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNR 123
Query: 143 LVGSIPFE-FVFLYKLKGLSLHKNNLT---GGISPFLGNLTFLELVSLSYNSFEGNIPDS 198
L +IP FV+L KLK L L N + + +L L+L +
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL--GELKRLSYISEGA 180
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
L L+ L + + NL P++ L L +S N + ++ +L+
Sbjct: 181 FEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLW 237
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNL 312
+ Q+ + N L I +A+N+ + F + +L + L +
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 59/214 (27%), Positives = 87/214 (40%), Gaps = 14/214 (6%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSL 138
+L L + L N I+ I F L L L L +N L IP Y S+L L L
Sbjct: 86 HLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWL 143
Query: 139 GQNKLVGSIPFE-FVFLYKLKGLSLHKNNLTGGISP-FLGNLTFLELVSLSYNSFEGNIP 196
N + SIP F + L+ L L + IS L+ L ++L+ + IP
Sbjct: 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201
Query: 197 DSLGQLKELKSLAIGVNNLSGKIPP-SICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255
+ L L +L L + N+LS I P S L L + Q+QI + N +L
Sbjct: 202 N-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLV 258
Query: 256 FFQIDQNFFTGSIPVS-LSNASKLEVIQIANNSF 288
+ N T +P + LE I + +N +
Sbjct: 259 EINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 1e-14
Identities = 59/259 (22%), Positives = 96/259 (37%), Gaps = 18/259 (6%)
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243
V + +PD + + L + N + S +L L +S+N I ++
Sbjct: 48 VICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TI 103
Query: 244 PSCLGLNFPNLKFFQIDQNFFTGSIPV-SLSNASKLEVIQIANNSFSGKFSVNFGGMKNL 302
NL ++ N T +IP + SKL+ + + NN S F + +L
Sbjct: 104 EIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162
Query: 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL 362
L L S S+ + S LR L+ R + ++T L L L L
Sbjct: 163 RRLDLGELKRLSYISE-----GAFEGLSNLRYLNLAMCNLREI--PNLTPLIK-LDELDL 214
Query: 363 GFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIP 420
N L +I G L++L L M Q+Q I I + L +L ++ N+ +
Sbjct: 215 SGNHL-SAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPH 272
Query: 421 STLGNLSSLSEIVLSNNNL 439
L L I L +N
Sbjct: 273 DLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 3e-13
Identities = 46/240 (19%), Positives = 81/240 (33%), Gaps = 16/240 (6%)
Query: 108 RLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFE-FVFLYKLKGLSLHKNN 166
L L N + + + L +L L +N + +I F L L L L N
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNR 123
Query: 167 LTGGISP-FLGNLTFLELVSLSYNSFEGNIP-DSLGQLKELKSLAIGVNNLSGKIPPSI- 223
LT I L+ L+ + L N E +IP + ++ L+ L +G I
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 224 CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQI 283
LS L +++ + +P+ L L + N + P S L+ + +
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIPNLTPL--IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 284 ANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR 343
+ F +++L + L +NL D L + N +
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD------LFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 3e-13
Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 18/231 (7%)
Query: 213 NNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVS 271
NL ++P I N L ++ +NQI + + +L+ Q+ +N +
Sbjct: 53 KNLR-EVPDGISTNTRLL---NLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107
Query: 272 LSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSK 331
+ + L +++ +N + + F + L L L+++ + S S +
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY------AFNRIPS 161
Query: 332 LRVLSFGR-NQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQ 390
LR L G + + + LS+ L+ L L L IP+ + L+ L L + N
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSN-LRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNH 218
Query: 391 FIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
+ I L++LQ L + + NL SL EI L++NNL+
Sbjct: 219 -LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 44/194 (22%), Positives = 76/194 (39%), Gaps = 12/194 (6%)
Query: 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSS 310
N + + +N S + LE++Q++ N F G+ NL+ L L +
Sbjct: 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 311 NLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLG-FNQLYG 369
L + + + SKL+ L N + ++ + S L+ L LG +L
Sbjct: 123 RLTTIPNG------AFVYLSKLKELWLRNNPIESIPSYAFNRIPS-LRRLDLGELKRL-S 174
Query: 370 SIPSGI-GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSS 428
I G L NL L + + IP + L+ L LD GNH S P + L
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232
Query: 429 LSEIVLSNNNLSGV 442
L ++ + + + +
Sbjct: 233 LQKLWMIQSQIQVI 246
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 7e-08
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 5/116 (4%)
Query: 332 LRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQ 390
R+L+ NQ + + +S +L L++L L N + +I G L NL L + N+
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNR 123
Query: 391 FIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
+ TIP L L+ L N + SL + L I
Sbjct: 124 -LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLT 134
P++ L L E++L N + I P F L L+ L++ + + I N L
Sbjct: 201 PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLV 258
Query: 135 VLSLGQNKLVGSIPFE-FVFLYKLKGLSLHKNNL 167
++L N L +P + F L+ L+ + LH N
Sbjct: 259 EINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 6e-15
Identities = 26/191 (13%), Positives = 66/191 (34%), Gaps = 14/191 (7%)
Query: 252 PNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSN 311
K + + + ++ + + L I +AN + + + N+ L + + +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH 77
Query: 312 LGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSI 371
+ N ++ S L L +++ L+ L +L + + SI
Sbjct: 78 ATN--------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLTLLDISHSAHDDSI 128
Query: 372 PSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSE 431
+ I L + + + N I I + L L+ L+ + + + L++
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQ 185
Query: 432 IVLSNNNLSGV 442
+ + + G
Sbjct: 186 LYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-13
Identities = 23/151 (15%), Positives = 52/151 (34%), Gaps = 12/151 (7%)
Query: 294 VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL 353
+ M +L+++ L + N+ + + ++ L+ P I+ L
Sbjct: 38 ITEAQMNSLTYITLANINVTD--------LTGIEYAHNIKDLTINNIHATNYNP--ISGL 87
Query: 354 SSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGN 413
S L+ L + + + L +L LL + + +I ++ L + +D N
Sbjct: 88 S-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146
Query: 414 HFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
I L L L + + + +
Sbjct: 147 GAITDI-MPLKTLPELKSLNIQFDGVHDYRG 176
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 8e-13
Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 8/157 (5%)
Query: 106 LFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165
+ L + LAN ++ + Y + L++ P L L+ L +
Sbjct: 43 MNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNPISG--LSNLERLRIMGK 98
Query: 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICN 225
++T P L LT L L+ +S+++ + +I + L ++ S+ + N I P +
Sbjct: 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKT 157
Query: 226 LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQN 262
L L + ++ + +H + +FP L
Sbjct: 158 LPELKSLNIQFDGVHDYRG--IE-DFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 6e-10
Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 3/111 (2%)
Query: 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138
I LS L + +M + + P L L L +++++ I ++ ++ + L
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143
Query: 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYN 189
N + I L +LK L++ + + + + L +
Sbjct: 144 SYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYRG-IEDFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 3e-09
Identities = 22/194 (11%), Positives = 61/194 (31%), Gaps = 24/194 (12%)
Query: 177 NLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVN---FS 233
L +S + Q+ L + + N++ + + + N +
Sbjct: 21 TFKAYLNGLLGQSS---TANITEAQMNSLTYITLANINVT-----DLTGIEYAHNIKDLT 72
Query: 234 VSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFS 293
++ + + NL+ +I T +LS + L ++ I++++
Sbjct: 73 INNIHATNY--NPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129
Query: 294 VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL 353
+ ++ + L + + I L +L+ L+ + I +
Sbjct: 130 TKINTLPKVNSIDLSYNGAITD-------IMPLKTLPELKSLNIQFDGVHDYRG--IEDF 180
Query: 354 SSQLQVLFLGFNQL 367
+L L+ +
Sbjct: 181 -PKLNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
L +M K ++ P++ L+ L +++ + I + L ++ ++ L+ N + I
Sbjct: 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG 169
L L L++ + + E KL L + G
Sbjct: 153 M-PLKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 355 SQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNH 414
+ L + L + + +GI N+ L + + L NL+ L G
Sbjct: 44 NSLTYITLANINV-TDL-TGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKD 99
Query: 415 FSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
+ L L+SL+ + +S++ I +
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 28/243 (11%)
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGL-NFPNLKFF 257
L +A G +N++ + +L + S + + G+ NL
Sbjct: 15 DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT----TIEGVQYLNNLIGL 68
Query: 258 QIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGES 317
++ N T + L N +K+ ++++ N G++++ L L S+ +
Sbjct: 69 ELKDNQIT-DLA-PLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITD--- 121
Query: 318 DEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGN 377
+ LA S L+VL NQ + P + L+ LQ L +G Q+ S + + N
Sbjct: 122 -----VTPLAGLSNLQVLYLDLNQITNISP--LAGLT-NLQYLSIGNAQV--SDLTPLAN 171
Query: 378 LVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437
L L L + N+ I I + L NL + N S P L N S+L + L+N
Sbjct: 172 LSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227
Query: 438 NLS 440
++
Sbjct: 228 TIT 230
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 4e-13
Identities = 49/267 (18%), Positives = 91/267 (34%), Gaps = 26/267 (9%)
Query: 126 NLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVS 185
+ ++ G++ + ++ L + LS +T I + L L +
Sbjct: 14 PDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLE 69
Query: 186 LSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS 245
L N ++ L L ++ L + N L + I L + ++ QI P
Sbjct: 70 LKDNQIT-DLA-PLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTPL 125
Query: 246 CLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHL 305
NL+ +D N T +I L+ + L+ + I N S + + L+ L
Sbjct: 126 A---GLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTL 178
Query: 306 ILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFN 365
+ + I+ LA+ L + NQ V P + N S L ++ L
Sbjct: 179 KADDNKISD--------ISPLASLPNLIEVHLKNNQISDVSP--LANT-SNLFIVTLTNQ 227
Query: 366 QLYGSIPSGIGNLVNLYLLAMEQNQFI 392
+ NLV ++ I
Sbjct: 228 TITNQPVFYNNNLVVPNVVKGPSGAPI 254
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-11
Identities = 47/229 (20%), Positives = 83/229 (36%), Gaps = 19/229 (8%)
Query: 81 NLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQ 140
L+ +I + + + L + L + I + Y + L L L
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72
Query: 141 NKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLG 200
N++ P + L K+ L L N L +S + L ++ + L+ P L
Sbjct: 73 NQITDLAPLK--NLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP--LA 126
Query: 201 QLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQID 260
L L+ L + +N ++ I P + L+ L S+ Q+ L L L + D
Sbjct: 127 GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DLTPLANL--SKLTTLKAD 181
Query: 261 QNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQS 309
N + I L++ L + + NN S S NL + L +
Sbjct: 182 DNKIS-DIS-PLASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTN 226
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 9e-11
Identities = 46/221 (20%), Positives = 86/221 (38%), Gaps = 17/221 (7%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVL 136
+ NL+ + E+ L N ++ + L ++ L L + + P L+ S L VL
Sbjct: 79 APLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVL 134
Query: 137 SLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIP 196
L N++ P L L+ LS+ ++ ++P L NL+ L + N +I
Sbjct: 135 YLDLNQITNISPLA--GLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS-DIS 189
Query: 197 DSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKF 256
L L L + + N +S + P + N S L +++ I NL
Sbjct: 190 -PLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQPV----FYNNNLVV 242
Query: 257 FQIDQNFFTGSI-PVSLSNASKLEVIQIANNSFSGKFSVNF 296
+ + I P ++S+ + N S +V++
Sbjct: 243 PNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSY 283
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 52/252 (20%), Positives = 96/252 (38%), Gaps = 25/252 (9%)
Query: 109 LEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168
+ +++ + + +T LS + ++ L L GL L N +T
Sbjct: 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQY--LNNLIGLELKDNQIT 76
Query: 169 GGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSF 228
++P L NLT + + LS N ++ L+ +K+L + ++ P + LS
Sbjct: 77 D-LAP-LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSN 130
Query: 229 LVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288
L + NQI + S L NL++ I + P L+N SKL ++ +N
Sbjct: 131 LQVLYLDLNQI--TNISPLA-GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185
Query: 289 SGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPH 348
S + NL + L+++ + ++ LAN S L +++
Sbjct: 186 SD--ISPLASLPNLIEVHLKNNQISD--------VSPLANTSNLFIVTLTNQTITNQPVF 235
Query: 349 SITNLSSQLQVL 360
NL V
Sbjct: 236 YNNNLVVPNVVK 247
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 38/197 (19%), Positives = 76/197 (38%), Gaps = 25/197 (12%)
Query: 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQS 309
N ++ T V+ ++ + + + + NL L L+
Sbjct: 17 ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72
Query: 310 SNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS--QLQVLFLGFNQL 367
+ + + L N +K+ L N + +++ ++ ++ L L Q+
Sbjct: 73 NQITD--------LAPLKNLTKITELELSGNPLK-----NVSAIAGLQSIKTLDLTSTQI 119
Query: 368 YGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLS 427
+ + + L NL +L ++ NQ I I + L NLQ L G S + + L NLS
Sbjct: 120 --TDVTPLAGLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQVS-DL-TPLANLS 173
Query: 428 SLSEIVLSNNNLSGVIP 444
L+ + +N +S + P
Sbjct: 174 KLTTLKADDNKISDISP 190
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 19/173 (10%)
Query: 272 LSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSK 331
+ I ++ + +V + ++ L + + + I + +
Sbjct: 15 DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--------IEGVQYLNN 64
Query: 332 LRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQF 391
L L NQ + P + NL+ ++ L L N L S I L ++ L + Q
Sbjct: 65 LIGLELKDNQITDLAP--LKNLT-KITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQ- 118
Query: 392 IGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
I + + L NLQ L N + I L L++L + + N +S + P
Sbjct: 119 ITDVT-PLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP 168
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 10/187 (5%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSL 138
L + L N + I F L LE L L++N+ + + RL L L
Sbjct: 54 ACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112
Query: 139 GQNKLVGSIPFE-FVFLYKLKGLSLHKNNLTGGISP-FLGNLTFLELVSLSYNSFEGNIP 196
+ L + F L L+ L L N L + +L L + L N
Sbjct: 113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPE 170
Query: 197 DSLGQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255
+ L L L + N ++ + P +L L+ + N + +LP+ L+
Sbjct: 171 RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQ 228
Query: 256 FFQIDQN 262
+ +++ N
Sbjct: 229 YLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 5e-13
Identities = 43/224 (19%), Positives = 78/224 (34%), Gaps = 19/224 (8%)
Query: 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKL 278
IP + + + N+I +P+ NL + N + + + L
Sbjct: 30 IPAASQRIF------LHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 279 EVIQIANNSFSGKFSVN-FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSF 337
E + +++N+ F G+ L L L L + L+ L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG------LFRGLAALQYLYL 136
Query: 338 GRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIP 396
N + + + +L L LFL N++ S+P L +L L + QN+ + +
Sbjct: 137 QDNALQALPDDTFRDLG-NLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNR-VAHVH 193
Query: 397 QEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNL 439
L L L N+ S L L +L + L++N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 7e-13
Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 18/196 (9%)
Query: 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQS- 309
+ + N + S L ++ + +N + + F G+ L L L
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 310 ---SNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQ 366
++ + +L L R + + P L++ LQ L+L N
Sbjct: 91 AQLRSVDPA---------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNA 140
Query: 367 LYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLG 424
L ++P +L NL L + N+ I ++P+ L +L L N + P
Sbjct: 141 L-QALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 425 NLSSLSEIVLSNNNLS 440
+L L + L NNLS
Sbjct: 199 DLGRLMTLYLFANNLS 214
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 8e-13
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 14/179 (7%)
Query: 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326
++PV + + + I + N S + +F +NL+ L L S+ L ++ +
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA------AAF 76
Query: 327 ANCSKLRVLSFGRN-QFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLL 384
+ L L N Q R V P + L +L L L L + G+ L L L
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRCGL-QELGPGLFRGLAALQYL 134
Query: 385 AMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
++ N + +P + L NL L GN S L SL ++L N ++ V
Sbjct: 135 YLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 7e-12
Identities = 46/210 (21%), Positives = 82/210 (39%), Gaps = 12/210 (5%)
Query: 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSLGQNKL 143
+ I L N I F L L+L +N L +I A + + L L L N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 144 VGSIPFE-FVFLYKLKGLSLHKNNLTGGISP-FLGNLTFLELVSLSYNSFEGNIPD-SLG 200
+ S+ F L +L L L + L + P L L+ + L N+ + +PD +
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150
Query: 201 QLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQI 259
L L L + N +S +P L L + QN++ + + L +
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208
Query: 260 DQNFFTGSIPVS-LSNASKLEVIQIANNSF 288
N + ++P L+ L+ +++ +N +
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 9e-12
Identities = 42/223 (18%), Positives = 80/223 (35%), Gaps = 12/223 (5%)
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLE 182
+P + + + L N++ F L L LH N L + L LE
Sbjct: 26 VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 183 LVSLSYNSFEGNIP-DSLGQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIH 240
+ LS N+ ++ + L L +L + L ++ P + L+ L + N +
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142
Query: 241 GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMK 300
+LP + NL + N + + L+ + + N + F +
Sbjct: 143 -ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 301 NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR 343
L L L ++NL + ++ +LA L+ L N +
Sbjct: 202 RLMTLYLFANNLSALPTE------ALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 7/164 (4%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSL 138
L+ L +++L DN + P F L RL L L L ++ + L L L
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYL 136
Query: 139 GQNKLVGSIPFE-FVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPD 197
N L ++P + F L L L LH N ++ L L+ + L N P
Sbjct: 137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 198 SLGQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIH 240
+ L L +L + NNLS +P L L ++ N
Sbjct: 196 AFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 5e-10
Identities = 43/204 (21%), Positives = 73/204 (35%), Gaps = 6/204 (2%)
Query: 109 LEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168
+ +FL N + A+ C LT+L L N L F L L+ L L N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 169 GGISP-FLGNLTFLELVSLSYNSFEGNIP-DSLGQLKELKSLAIGVNNLSGKIPPSI-CN 225
+ P L L + L + + L L+ L + N L +P +
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRD 151
Query: 226 LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIAN 285
L L + + N+I S+P +L + QN P + + +L + +
Sbjct: 152 LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 286 NSFSGKFSVNFGGMKNLSHLILQS 309
N+ S + ++ L +L L
Sbjct: 211 NNLSALPTEALAPLRALQYLRLND 234
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-12
Identities = 45/251 (17%), Positives = 76/251 (30%), Gaps = 23/251 (9%)
Query: 57 RHRRVIALDLMSKALSGSLSPH---IGNLSFLREINLMDNTIQGEIPPEFGRLF--RLEA 111
+ + L + + + + + +S L+E+ L + + G PP L
Sbjct: 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125
Query: 112 LFLANNSLVG--KIPANLSYCS--RLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNL 167
L L N S A L L VLS+ Q + + L L L N
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
Query: 168 TGGISPF-------LGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIP 220
G L L L + + G +L+ L + N+L
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 221 PSIC-NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLE 279
C S L + ++S + +P L L + N P S ++
Sbjct: 246 APSCDWPSQLNSLNLSFTGLK-QVPKGL---PAKLSVLDLSYNRLD-RNP-SPDELPQVG 299
Query: 280 VIQIANNSFSG 290
+ + N F
Sbjct: 300 NLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 2e-11
Identities = 51/312 (16%), Positives = 89/312 (28%), Gaps = 46/312 (14%)
Query: 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLK 203
+G+ E + L + + + F + L L L+ + G L+
Sbjct: 31 LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90
Query: 204 -----ELKSLAIGVNNLSGKIPPSICNLSF--LVNFSVSQNQIHG---SLPSCLGLNFPN 253
L+ L + ++G PP + + L ++ L P
Sbjct: 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG 150
Query: 254 LKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKF----SVNFGGMKNLSHLILQS 309
LK I Q + L + +++N G+ ++ L L L++
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210
Query: 310 SNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYG 369
+ + E+ A +L+ L N R + SQL L L F L
Sbjct: 211 AGM---ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266
Query: 370 SIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSL 429
+P G+ L LD N PS L +
Sbjct: 267 QVPKGLPA--------------------------KLSVLDLSYNRLDR-NPSPDE-LPQV 298
Query: 430 SEIVLSNNNLSG 441
+ L N
Sbjct: 299 GNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 8e-11
Identities = 51/291 (17%), Positives = 91/291 (31%), Gaps = 38/291 (13%)
Query: 112 LFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLY---KLKGLSLHKNNLT 168
L + ++ L L++ ++ I F + + L+ L+L +T
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 169 GGISPFLGNLTFLELVSLSYNSFEGNIPDSL------GQLKELKSLAIGVNNLSGKIPPS 222
G P L T +L L+ + D+ LK L+I +
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 223 ICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQ 282
+ L +S N G ++ + P+ L +
Sbjct: 169 VRVFPALSTLDLSDNPELG------------------ERGLISALCPLKFPTLQVLALRN 210
Query: 283 IANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQF 342
+ SG S L L L ++L S S+L L+
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-----SCDWPSQLNSLNLSFTGL 265
Query: 343 RGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIG 393
+ V L ++L VL L +N+L PS L + L+++ N F+
Sbjct: 266 KQVPK----GLPAKLSVLDLSYNRL-DRNPS-PDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 6e-10
Identities = 47/305 (15%), Positives = 86/305 (28%), Gaps = 48/305 (15%)
Query: 80 GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSY---CSRLTVL 136
G S + +D + + L+ L + + +I S L L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 137 SLGQNKLVGSIPFEFVFLY--KLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGN 194
+L ++ G+ P + L L+L + + +L L L
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA-WLAELQQWLKPGL-------- 151
Query: 195 IPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLP---SCLGLNF 251
K L+I + + L +S N G + L F
Sbjct: 152 -----------KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200
Query: 252 PNLKFFQIDQNFFT---GSIPVSLSNASKLEVIQIANNSFSGKFSV-NFGGMKNLSHLIL 307
P L+ + G + +L+ + +++NS + L+ L L
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260
Query: 308 QSSNLGSGESDEMGFINSLANC--SKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFN 365
S + + +KL VL N+ + Q+ L L N
Sbjct: 261 -SFT----------GLKQVPKGLPAKLSVLDLSYNRLDRN---PSPDELPQVGNLSLKGN 306
Query: 366 QLYGS 370
S
Sbjct: 307 PFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-08
Identities = 39/206 (18%), Positives = 56/206 (27%), Gaps = 16/206 (7%)
Query: 253 NLKFFQIDQNFFTGSIPVSLS---NASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQS 309
+LK + I S L+ + + N +G IL
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 310 SNLGSGESDEMGFINSLANCSK--LRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQL 367
N+ D ++ L K L+VLS + + + L L L N
Sbjct: 129 RNVSWATRDA--WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA-LSTLDLSDNPE 185
Query: 368 YGSI-------PSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP 420
G P L L L G + LQGLD N
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 421 -STLGNLSSLSEIVLSNNNLSGVIPS 445
+ S L+ + LS L V
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKG 271
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 1e-08
Identities = 45/256 (17%), Positives = 77/256 (30%), Gaps = 17/256 (6%)
Query: 199 LGQLKELKSLAIGVNN-LSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCL--GLNFPNLK 255
G + L+ L V+ I L +V +I + L L+
Sbjct: 39 YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98
Query: 256 FFQIDQNFFTGSIPVSLSNAS--KLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLG 313
++ TG+ P L A+ L ++ + N S++ + + ++ L+ ++
Sbjct: 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA-WLAELQQWLKPGLKVLSIA 157
Query: 314 SGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQ---LQVLFL---GFNQL 367
S + L L N G + LQVL L G
Sbjct: 158 QAHSLNFSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216
Query: 368 YGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLL-NLQGLDFGGNHFSGKIPSTLGNL 426
G + V L L + N L L+ ++P L
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--P 273
Query: 427 SSLSEIVLSNNNLSGV 442
+ LS + LS N L
Sbjct: 274 AKLSVLDLSYNRLDRN 289
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 34/233 (14%), Positives = 66/233 (28%), Gaps = 12/233 (5%)
Query: 224 CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIP-VSLSNASKLEVIQ 282
CN S S G+ L +L++ + + + L+ +
Sbjct: 15 CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLT 74
Query: 283 IANNSFSGKFSVN---FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGR 339
+ + G+ L L L++ + +G + + + + L + +
Sbjct: 75 VRAARIPSRILFGALRVLGISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSW 133
Query: 340 NQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQE- 398
L L L+VL + + L L + N +G
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193
Query: 399 ---MGKLLNLQGLDFGGNHF---SGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
K LQ L SG + L + LS+N+L +
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 5e-12
Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 15/208 (7%)
Query: 64 LDLMSKALSGSLSPHI-GNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVG 121
LDL L L + + L+ ++L IQ I + L L L L N +
Sbjct: 33 LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI-Q 89
Query: 122 KIPANL-SYCSRLTVLSLGQNKLVGSIP-FEFVFLYKLKGLSLHKNNLTGGISP-FLGNL 178
+ S S L L + L S+ F L LK L++ N + P + NL
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 179 TFLELVSLSYN---SFEGNIPDSLGQLKELK-SLAIGVNNLSGKIPPSICNLSFLVNFSV 234
T LE + LS N S L Q+ L SL + +N ++ I P L ++
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELAL 207
Query: 235 SQNQIHGSLPSCLGLNFPNLKFFQIDQN 262
NQ+ S+P + +L+ + N
Sbjct: 208 DTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 51/226 (22%), Positives = 83/226 (36%), Gaps = 24/226 (10%)
Query: 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSL-SNASK 277
+P S NL S N + L S +FP L+ + + +I + S
Sbjct: 26 LPFSTKNLDL------SFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77
Query: 278 LEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSF 337
L + + N F G+ +L L+ +NL S E+ + + L+ L+
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN------FPIGHLKTLKELNV 131
Query: 338 GRNQFRGV-LPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAME----QNQF 391
N + LP +NL+ L+ L L N++ SI L + LL + N
Sbjct: 132 AHNLIQSFKLPEYFSNLT-NLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNP- 188
Query: 392 IGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437
+ I K + L+ L N L+SL +I L N
Sbjct: 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 12/143 (8%)
Query: 301 NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL 360
+ +L L + L S S + +L+VL R + + + + +LS L L
Sbjct: 29 STKNLDLSFNPLRHLGS------YSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTL 81
Query: 361 FLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHF-SG 417
L N + S+ G L +L L + + ++ G L L+ L+ N S
Sbjct: 82 ILTGNPI-QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 418 KIPSTLGNLSSLSEIVLSNNNLS 440
K+P NL++L + LS+N +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQ 162
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 37/233 (15%)
Query: 85 LREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLGQNK 142
+ ++L N ++ + F L+ L L+ + I S L+ L L N
Sbjct: 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNP 87
Query: 143 LVGSIPFE-FVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQ 201
+ S+ F L L+ L + NL SL G
Sbjct: 88 I-QSLALGAFSGLSSLQKLVAVETNLA----------------SLENFPI--------GH 122
Query: 202 LKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ-- 258
LK LK L + N + P NL+ L + +S N+I S+ +
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS 181
Query: 259 --IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQS 309
+ N I +L+ + + N F + +L + L +
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 44/231 (19%), Positives = 75/231 (32%), Gaps = 26/231 (11%)
Query: 221 PSICNLSFLVNFSVS-QNQIHGSLPSCLGLNFP-NLKFFQIDQNFFTGSIPVSLSNASKL 278
P + + N + +P N P + K + N S + +L
Sbjct: 2 PCVEVVP---NITYQCMELNFYKIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPEL 54
Query: 279 EVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFG 338
+V+ ++ + + +LS LIL + + S + + S L+ L
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL------GAFSGLSSLQKLVAV 108
Query: 339 RNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSG--IGNLVNLYLLAMEQNQFIGTIP 396
+ I +L L+ L + N + S NL NL L + N+ I +I
Sbjct: 109 ETNLASLENFPIGHLK-TLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNK-IQSIY 165
Query: 397 QEM-GKLLNLQG----LDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
L + LD N + I L E+ L N L V
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSV 215
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 8e-07
Identities = 49/273 (17%), Positives = 87/273 (31%), Gaps = 66/273 (24%)
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLE 182
IP NL L L N L + F +L+ L L + +
Sbjct: 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------------- 65
Query: 183 LVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHG 241
++ +++ L L +L + N + + LS L + +
Sbjct: 66 --TIEDGAYQS--------LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA- 113
Query: 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKN 301
SL + + LK + N ++ ++ F + N
Sbjct: 114 SLENFPIGHLKTLKELNVAHN--------------LIQSFKLPE---------YFSNLTN 150
Query: 302 LSHLILQSSNLGSGESDEMGFINSLANCSKLRV----LSFGRNQFRGVLPHSITNLSSQL 357
L HL L S+ + S L ++ + L N + P + + +L
Sbjct: 151 LEHLDLSSNKIQSIYC------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RL 202
Query: 358 QVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQN 389
+ L L NQL S+P GI L +L + + N
Sbjct: 203 KELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 13/213 (6%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSL 138
L +I + N + I + F L +L + + + + I L L +
Sbjct: 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111
Query: 139 GQNKLVGSIP-FEFVFLYKLKGLSLHKNNLTGGISP--FLGNLTFLELVSLSYNSFEGNI 195
+ +P + + L + N I F+G ++ L+ N + I
Sbjct: 112 SNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI 169
Query: 196 PDSLGQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQNQIHGSLPSCLGLNFPNL 254
+S +L L + NN ++P + S V +S+ +IH SLPS N L
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL 228
Query: 255 KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNS 287
+ +P +L L + S
Sbjct: 229 RARSTYNLK---KLP-TLEKLVALMEASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 4e-10
Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 16/225 (7%)
Query: 220 PPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLE 279
IC+ S V F ++++ +PS L N + + S LE
Sbjct: 3 HHRICHCSNRV-FLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLE 57
Query: 280 VIQIANNSFSGKFSVN-FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFG 338
I+I+ N + F + L + ++ +N + E N L+ L
Sbjct: 58 KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA-----FQNLPNLQYLLIS 112
Query: 339 RNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI--GNLVNLYLLAMEQNQFIGTIP 396
+ LP S Q +L + N +I G +L + +N I I
Sbjct: 113 NTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIH 170
Query: 397 QEMGKLLNLQGLDFGGNHFSGKIPS-TLGNLSSLSEIVLSNNNLS 440
L L+ N+ ++P+ S + +S +
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 20/230 (8%)
Query: 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVS-LSNASK 277
+P + L F ++ + F +L+ +I QN I SN K
Sbjct: 28 LPRNAIELRF------VLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80
Query: 278 LEVIQIANNSFSGKFSVN-FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLS 336
L I+I + + F + NL +L++ ++ + I+SL + +L
Sbjct: 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH--KIHSL----QKVLLD 134
Query: 337 FGRNQFRGVLPH-SITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTI 395
N + S LS + +L+L N + I + N L L + N + +
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEEL 193
Query: 396 PQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
P ++ LD L NL L S NL +
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLKKLPT 241
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 9/140 (6%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSL 138
L+ L + L N + I E F + L L L++N L + S L VL L
Sbjct: 62 RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLL 119
Query: 139 GQNKLVGSIPFE-FVFLYKLKGLSLHKNNLT---GGISPFLGNLTFLELVSLSYNSFEGN 194
N +V + F + +L+ L L +N ++ + L L L+ LS N +
Sbjct: 120 YNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 195 IPDSLGQLKELKSLAIGVNN 214
L +L + ++N
Sbjct: 179 PLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 18/179 (10%)
Query: 267 SIPVSLSNASKLEVIQIANNSFSG-KFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINS 325
++P SL S ++ +++N+ S + + NL L+L ++L S+ +
Sbjct: 32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE------A 83
Query: 326 LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLL 384
LR L N + ++L L+VL L N + + ++ L L
Sbjct: 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDL-QALEVLLLYNNHI-VVVDRNAFEDMAQLQKL 141
Query: 385 AMEQNQFIGTIPQE----MGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLS-NNN 438
+ QNQ I P E KL L LD N + L L + + L +NN
Sbjct: 142 YLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 7e-09
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 15/148 (10%)
Query: 301 NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL 360
+ L L +NL ++ + + L L N + + + L+ L
Sbjct: 40 YTALLDLSHNNLSRLRAE-----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYL 93
Query: 361 FLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGK 418
L N L ++ + +L L +L + N I + + + LQ L N S +
Sbjct: 94 DLSSNHL-HTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS-R 150
Query: 419 IP----STLGNLSSLSEIVLSNNNLSGV 442
P L L + LS+N L +
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKL 178
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 4/115 (3%)
Query: 332 LRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQ 390
+L N + + L L L N L I S + NL L + N
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNH 99
Query: 391 FIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
+ T+ + + L L+ L NH + +++ L ++ LS N +S
Sbjct: 100 -LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 37/193 (19%)
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVF--LYKLKGLSLHKNNLTGGISPFLGNLTF 180
+P +L S +L L N L + E+ L L L L N+L
Sbjct: 33 VPQSLP--SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN------------ 77
Query: 181 LELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQNQI 239
+S +F + L+ L + N+L + + +L L + N I
Sbjct: 78 ----FISSEAFVP--------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI 124
Query: 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIP----VSLSNASKLEVIQIANNSFSGKFSVN 295
+ + L+ + QN + P + KL ++ +++N +
Sbjct: 125 V-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182
Query: 296 FGGMKNLSHLILQ 308
+ L
Sbjct: 183 LQKLPAWVKNGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 351 TNLSSQLQVLFLGFNQLYGSIPSGI--GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQG 407
+L S +L L N L + + L NL+ L + N + I E + NL+
Sbjct: 35 QSLPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRY 92
Query: 408 LDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
LD NH +L +L ++L NN++
Sbjct: 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 8e-05
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPA----NLSYCSRLTV 135
+L L + L +N I + F + +L+ L+L+ N + + P + + +L +
Sbjct: 110 DLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLML 167
Query: 136 LSLGQNKLVGSIPFEFVFLYKLK--GLSLHKNNLT 168
L L NKL + L GL LH N L
Sbjct: 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-11
Identities = 48/224 (21%), Positives = 76/224 (33%), Gaps = 34/224 (15%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
++ + L+ +L P + ++L +N + RL L L L K+
Sbjct: 15 VNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKL 70
Query: 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL 183
L L L N+L S+P L L L + N LT
Sbjct: 71 QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--------------- 113
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQNQIHGS 242
SL + G L EL+ L + N L +PP + L S++ N +
Sbjct: 114 -SLPLGALRG--------LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-E 162
Query: 243 LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN 286
LP+ L NL + +N +IP + L + N
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 3e-10
Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 20/177 (11%)
Query: 268 IPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLA 327
+P ++ ++ N L+ L L + L +
Sbjct: 29 LPKDT------TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--------LQVDG 74
Query: 328 NCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAM 386
L L NQ + LP L L VL + FN+L S+P G L L L +
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLP-ALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131
Query: 387 EQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
+ N+ + T+P + L+ L N+ + L L +L ++L N+L +
Sbjct: 132 KGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 38/189 (20%), Positives = 64/189 (33%), Gaps = 15/189 (7%)
Query: 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSS 310
+ + +N +L ++L + + + K V G + L L L +
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHN 87
Query: 311 NLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGS 370
L S L VL N+ + ++ L +LQ L+L N+L +
Sbjct: 88 QLQSLPL-------LGQTLPALTVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNEL-KT 138
Query: 371 IPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSS 428
+P G+ L L++ N + +P + L NL L N IP
Sbjct: 139 LPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHL 196
Query: 429 LSEIVLSNN 437
L L N
Sbjct: 197 LPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 6e-09
Identities = 45/205 (21%), Positives = 77/205 (37%), Gaps = 16/205 (7%)
Query: 109 LEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168
+ +L +P +L T+L L +N L + +L L+L + LT
Sbjct: 12 HLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 169 GGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI-CNLS 227
+ G L L + LS+N + ++P L L L + N L+ +P L
Sbjct: 69 -KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124
Query: 228 FLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSL-SNASKLEVIQIANN 286
L + N++ +LP L P L+ + N T +P L + L+ + + N
Sbjct: 125 ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182
Query: 287 SFSGKFSVNFG--GMKNLSHLILQS 309
S ++ G G L L
Sbjct: 183 SLY---TIPKGFFGSHLLPFAFLHG 204
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 351 TNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDF 410
+L +L L N LY + + L L +++ + + + G L L LD
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQ-VDGTLPVLGTLDL 84
Query: 411 GGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
N +P L +L+ + +S N L+
Sbjct: 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 46/238 (19%), Positives = 84/238 (35%), Gaps = 29/238 (12%)
Query: 205 LKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFF 264
L S I V +I + + ++ + + + ++ + +
Sbjct: 3 LGSETITVPTPIKQIFS-DDAFAETIKDNLKKKSV--TDAVTQN-ELNSIDQIIANNSDI 58
Query: 265 TGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFIN 324
S+ + + + + N + +KNL L L + + ++
Sbjct: 59 K-SVQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD--------LS 106
Query: 325 SLANCSKLRVLSFGRNQFRGVLPHSITNLS--SQLQVLFLGFNQLYGSIPSGIGNLVNLY 382
SL + KL+ LS N I L QL+ L+LG N++ + + + L L
Sbjct: 107 SLKDLKKLKSLSLEHNGIS-----DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLD 159
Query: 383 LLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
L++E NQ I I + L LQ L NH S L L +L + L +
Sbjct: 160 TLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 213
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 17/232 (7%)
Query: 81 NLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQ 140
+ + NL ++ + L ++ + N+ + + + Y +T L L
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNG 77
Query: 141 NKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLG 200
NKL P L L L L +N + +S L +L L+ +SL +N +I + L
Sbjct: 78 NKLTDIKPLA--NLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DI-NGLV 131
Query: 201 QLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQID 260
L +L+SL +G N ++ I + L+ L S+ NQI + GL L+ +
Sbjct: 132 HLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVPLAGL--TKLQNLYLS 186
Query: 261 QNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNL 312
+N + + +L+ L+V+++ + K + + + + +L
Sbjct: 187 KNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 6e-10
Identities = 54/212 (25%), Positives = 86/212 (40%), Gaps = 19/212 (8%)
Query: 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138
L+ + +I ++ I+ + L + LFL N L I L+ L L L
Sbjct: 42 QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT-DIK-PLANLKNLGWLFL 97
Query: 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPD- 197
+NK+ + L KLK LSL N ++ I+ L +L LE + L N I D
Sbjct: 98 DENKVKDLSSLK--DLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNN----KITDI 149
Query: 198 -SLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKF 256
L +L +L +L++ N +S I P + L+ L N +S+N I S L NL
Sbjct: 150 TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI--SDLRALA-GLKNLDV 204
Query: 257 FQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288
++ SN ++ + S
Sbjct: 205 LELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 46/291 (15%), Positives = 95/291 (32%), Gaps = 58/291 (19%)
Query: 154 LYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPD--SLGQLKELKSLAIG 211
+ +L K ++T + L ++ + + + +I + L + L +
Sbjct: 23 FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFLN 76
Query: 212 VNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVS 271
N L+ I P + NL L + +N++ + S
Sbjct: 77 GNKLT-DIKP-LANLKNLGWLFLDENKVK--------------------------DL-SS 107
Query: 272 LSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSK 331
L + KL+ + + +N S + + L L L ++ + I L+ +K
Sbjct: 108 LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITD--------ITVLSRLTK 157
Query: 332 LRVLSFGRNQFRGVLPHSITNLSS--QLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQN 389
L LS NQ I L+ +LQ L+L N + S + L NL +L +
Sbjct: 158 LDTLSLEDNQIS-----DIVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQ 210
Query: 390 QFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
+ + L+ + P + + + + +
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 42/239 (17%), Positives = 87/239 (36%), Gaps = 27/239 (11%)
Query: 126 NLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVS 185
+ + +L + + ++ L + + + +++ + + L + +
Sbjct: 19 SDDAFAETIKDNLKKKSVTDAVTQNE--LNSIDQIIANNSDIKS-VQG-IQYLPNVTKLF 74
Query: 186 LSYNSFEGNIPD--SLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243
L+ N + D L LK L L + N + + + +L L + S+ N I S
Sbjct: 75 LNGN----KLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGI--SD 126
Query: 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303
+ L + P L+ + N T I LS +KL+ + + +N S G+ L
Sbjct: 127 INGLV-HLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQ 181
Query: 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL 362
+L L +++ + +LA L VL + + +NL V
Sbjct: 182 NLYLSKNHISD--------LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 21/152 (13%)
Query: 295 NFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLS 354
+ L+ ++ + + + + + + S+ +
Sbjct: 19 SDDAFAETIKDNLKKKSVTD--------AVTQNELNSIDQIIANNSDIK-----SVQGIQ 65
Query: 355 S--QLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGG 412
+ LFL N+L I + NL NL L +++N+ + + + L L+ L
Sbjct: 66 YLPNVTKLFLNGNKL-TDI-KPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEH 121
Query: 413 NHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
N S I L +L L + L NN ++ +
Sbjct: 122 NGIS-DING-LVHLPQLESLYLGNNKITDITV 151
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 8/142 (5%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVL 136
+ +L L + L +N I +I RL +L+ L L +N + I L+ ++L L
Sbjct: 128 NGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 183
Query: 137 SLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIP 196
L +N + + L L L L NL V + S P
Sbjct: 184 YLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--P 239
Query: 197 DSLGQLKELKSLAIGVNNLSGK 218
+ + + + + +
Sbjct: 240 EIISDDGDYEKPNVKWHLPEFT 261
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 4e-10
Identities = 46/161 (28%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 279 EVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFG 338
E + + + + F G+ L+ L L + L + + G + L L L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA---GVFDDLTE---LGTLGLA 91
Query: 339 RNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQ 397
NQ LP + + +QL L+LG NQL S+PSG+ L L L + NQ + +IP
Sbjct: 92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQ-LQSIPA 148
Query: 398 EM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437
KL NLQ L N L L I L N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 44/169 (26%), Positives = 65/169 (38%), Gaps = 17/169 (10%)
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT---GGISPFLGNLT 179
IPA+ L L L F L KL L+L N L G+ L L
Sbjct: 33 IPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 180 FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQNQ 238
L L + S + D L QL +L +G N L +P + L+ L ++ NQ
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLY---LGGNQLK-SLPSGVFDRLTKLKELRLNTNQ 142
Query: 239 IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPV-SLSNASKLEVIQIANN 286
+ S+P+ NL+ + N S+P + KL+ I + N
Sbjct: 143 LQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 45/161 (27%), Positives = 64/161 (39%), Gaps = 17/161 (10%)
Query: 110 EALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFE-FVFLYKLKGLSLHKNNLT 168
E L L + L A ++LT L+L N+L ++ F L +L L L N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96
Query: 169 ---GGISPFLGNLTFLELVSLSYN---SFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPS 222
G+ L L L L N S + D L +LKE L + N L IP
Sbjct: 97 SLPLGVFDHLTQLDKL---YLGGNQLKSLPSGVFDRLTKLKE---LRLNTNQLQ-SIPAG 149
Query: 223 ICN-LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQN 262
+ L+ L S+S NQ+ S+P L+ + N
Sbjct: 150 AFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 9e-10
Identities = 41/192 (21%), Positives = 74/192 (38%), Gaps = 24/192 (12%)
Query: 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQS 309
N + + T VS S ++ N++ + NL L L
Sbjct: 17 GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSH 72
Query: 310 SNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS-QLQVLFLGFNQLY 368
+ + ++ L + +KL LS RN+ + ++ + S L LFL N+L
Sbjct: 73 NQISD--------LSPLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNEL- 118
Query: 369 GSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSS 428
+ +L NL +L++ N+ + +I +G L L+ LD GN + L L
Sbjct: 119 -RDTDSLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKK 173
Query: 429 LSEIVLSNNNLS 440
++ I L+
Sbjct: 174 VNWIDLTGQKCV 185
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 16/218 (7%)
Query: 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138
LS ++ N ++ IQ + L+ L L++N + + L ++L LS+
Sbjct: 37 QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSV 92
Query: 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDS 198
+N+L L L L N L L +L LE++S+ N + +I
Sbjct: 93 NRNRLKNLNGIPSA---CLSRLFLDNNELR-DTDS-LIHLKNLEILSIRNNKLK-SI-VM 145
Query: 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
LG L +L+ L + N ++ + L + ++ + +
Sbjct: 146 LGFLSKLEVLDLHGNEIT-NTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKD 203
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNF 296
D + + P +SN + V++
Sbjct: 204 PDGRWIS---PYYISNGGSYVDGCVLWELPVYTDEVSY 238
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 22/188 (11%)
Query: 154 LYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVN 213
L +L K ++T + L+ ++ + ++ + ++ + LK L + N
Sbjct: 18 LANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHN 73
Query: 214 NLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLS 273
+S + P + +L+ L SV++N++ +L G+ L +D N SL
Sbjct: 74 QIS-DLSP-LKDLTKLEELSVNRNRLK-NLN---GIPSACLSRLFLDNNELR-DTD-SLI 125
Query: 274 NASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLR 333
+ LE++ I NN G + L L L + + + L K+
Sbjct: 126 HLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITN--------TGGLTRLKKVN 175
Query: 334 VLSFGRNQ 341
+ +
Sbjct: 176 WIDLTGQK 183
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 14/124 (11%)
Query: 323 INSLANCSKLRVLSFGRNQFRGVLPHSITNLS--SQLQVLFLGFNQLYGSIPSGIGNLVN 380
+ + + G+ + + S +Q + + +G+ N
Sbjct: 12 VFPDPGLANAVKQNLGKQSVT-----DLVSQKELSGVQNFNGDNSNI--QSLAGMQFFTN 64
Query: 381 LYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
L L + NQ I + + L L+ L N LS L L NN L
Sbjct: 65 LKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELR 119
Query: 441 GVIP 444
Sbjct: 120 DTDS 123
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 18/229 (7%)
Query: 213 NNLSGKIPPSICNLSFLVNFSVS-QNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVS 271
N K +C+ + N SV ++ ++PS + + K + N + +
Sbjct: 1 NEALCKKDGGVCSCNNNKN-SVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKA 56
Query: 272 LSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSK 331
+KL ++ + +N + F +KNL L + + L + G + L
Sbjct: 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI---GVFDQL---VN 110
Query: 332 LRVLSFGRNQFRGVLPHSI-TNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQN 389
L L RNQ + LP + +L+ +L L LG+N+L S+P G+ L +L L + N
Sbjct: 111 LAELRLDRNQLKS-LPPRVFDSLT-KLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNN 167
Query: 390 QFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437
Q + +P+ KL L+ L N +L L + L N
Sbjct: 168 Q-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Query: 85 LREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLGQNK 142
++++L N + +P + F RL +L L+L +N L +PA + L L + NK
Sbjct: 39 TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96
Query: 143 LVGSIPFE-FVFLYKLKGLSLHKNNLT---GGISPFLGNLTFLELVSLSYNSFEGNIPDS 198
L ++P F L L L L +N L + L LT+L SL YN + ++P
Sbjct: 97 LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL---SLGYNELQ-SLPKG 151
Query: 199 L-GQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKF 256
+ +L LK L + N L ++P L+ L + NQ+ +P + LK
Sbjct: 152 VFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKM 209
Query: 257 FQIDQN 262
Q+ +N
Sbjct: 210 LQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 8e-08
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 11/149 (7%)
Query: 296 FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS 355
F + L L L + L + + G L N L L N+ + LP + +
Sbjct: 57 FHRLTKLRLLYLNDNKLQTLPA---GIFKELKN---LETLWVTDNKLQ-ALPIGVFDQLV 109
Query: 356 QLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGN 413
L L L NQL S+P + +L L L++ N+ + ++P+ + KL +L+ L N
Sbjct: 110 NLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN 167
Query: 414 HFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
L+ L + L NN L V
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 17/192 (8%)
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT---GGISPFLGNLT 179
IPA+ L L NKL F L KL+ L L+ N L GI L NL
Sbjct: 35 IPADT------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 180 FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQNQ 238
L + + + D L L EL+ + N L +PP + +L+ L S+ N+
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELR---LDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144
Query: 239 IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSL-SNASKLEVIQIANNSFSGKFSVNFG 297
+ SLP + +LK ++ N +P ++L+ +++ NN F
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Query: 298 GMKNLSHLILQS 309
++ L L LQ
Sbjct: 203 SLEKLKMLQLQE 214
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-09
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 330 SKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQ 388
L+ L G NQ LP + + +QL VL LG NQL +PS + LV+L L M
Sbjct: 64 INLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCC 121
Query: 389 NQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437
N+ +P+ + +L +L L N LSSL+ L N
Sbjct: 122 NKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 5e-06
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 333 RVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQF 391
++L NQ L + + L+ L+LG NQL G++P G+ +L L +L + NQ
Sbjct: 43 QILYLHDNQITK-LEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ- 99
Query: 392 IGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
+ +P + +L++L+ L N + ++P + L+ L+ + L N L +
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 41/139 (29%), Positives = 54/139 (38%), Gaps = 23/139 (16%)
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT---GGISPFLGNLT 179
IP N +L L N++ P F L LK L L N L G+ L LT
Sbjct: 38 IPTNA------QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91
Query: 180 FLELVSLSYN---SFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQ 236
L L N + D L LKE L + N L+ ++P I L+ L + ++ Q
Sbjct: 92 VL---DLGTNQLTVLPSAVFDRLVHLKE---LFMCCNKLT-ELPRGIERLTHLTHLALDQ 144
Query: 237 NQIHGSLPSCLGLNFPNLK 255
NQ L S F L
Sbjct: 145 NQ----LKSIPHGAFDRLS 159
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 110 EALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVF--LYKLKGLSLHKNNL 167
+ L+L +N + P L L LG N+L ++P VF L +L L L N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALP-VGVFDSLTQLTVLDLGTNQL 100
Query: 168 TG---GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNL 215
T + L +L L + N +P + +L L LA+ N L
Sbjct: 101 TVLPSAVFDRLVHLKEL---FMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 34/231 (14%), Positives = 91/231 (39%), Gaps = 34/231 (14%)
Query: 85 LREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLGQNK 142
+ + L++ ++ IP F L + ++++ + + ++ ++ S++T + + +
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 143 LVGSIPFE-FVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSL- 199
+ I + L LK L + L + + ++ ++ N + +IP +
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151
Query: 200 -GQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQ 258
G E +L + N + + N + L +++N+ L
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK--------------YLT--V 194
Query: 259 IDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQS 309
ID++ F G S ++ ++ S + ++ G+++L LI ++
Sbjct: 195 IDKDAFGG-------VYSGPSLLDVSQTSVT---ALPSKGLEHLKELIARN 235
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 33/227 (14%), Positives = 75/227 (33%), Gaps = 18/227 (7%)
Query: 220 PPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPV-SLSNASKL 278
C +F V+ I +PS P+ + ++ + +IP + SN +
Sbjct: 4 SSPPCECHQEEDFRVTCKDIQ-RIPSLP----PSTQTLKLIETHLR-TIPSHAFSNLPNI 57
Query: 279 EVIQIANNSFSGKFSVN-FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSF 337
I ++ + + + F + ++H+ ++++ + + L L+ L
Sbjct: 58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA-----LKELPLLKFLGI 112
Query: 338 GRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVN-LYLLAMEQNQFIGTI 395
+ + + +L + N SIP L N L + N ++
Sbjct: 113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSV 171
Query: 396 PQEMGKLLNLQGLDFGGNHFSGKIPSTL--GNLSSLSEIVLSNNNLS 440
L + N + I G S S + +S +++
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 8e-08
Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 11/173 (6%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSL 138
NL + I + + ++ F L ++ + + N + I + L L L +
Sbjct: 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112
Query: 139 GQNKLVGSIPFEFVF--LYKLKGLSLHKNNLTGGISP--FLGNLTFLELVSLSYNSFEGN 194
L P L + N I F G + L N F +
Sbjct: 113 FNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-S 170
Query: 195 IPDSLGQLKELKSLAIGVNNLSGKIPPSICN--LSFLVNFSVSQNQIHGSLPS 245
+ +L ++ + N I S VSQ + +LPS
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 11/161 (6%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN--LSYCSRLTVLS 137
NLS + I + + I P+ L L+ L + N L P + +L
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILE 136
Query: 138 LGQNKLVGSIPFE-FVFLYK-LKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195
+ N + SIP F L L L+ N T + + N T L+ V L+ N + I
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI 195
Query: 196 PDSL--GQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFS 233
G L + +++ +P +L L+ +
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARN 235
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 1e-08
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 9/130 (6%)
Query: 78 HIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLS 137
+ +R ++L + + +L + L L++N L +P L+ L VL
Sbjct: 436 LKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQ 492
Query: 138 LGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG--GISPFLGNLTFLELVSLSYNSFEGNI 195
N L ++ L +L+ L L N L I P L + L L++L NS
Sbjct: 493 ASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLC-QE 548
Query: 196 PDSLGQLKEL 205
+L E+
Sbjct: 549 EGIQERLAEM 558
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 2e-08
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 11/124 (8%)
Query: 320 MGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLS--SQLQVLFLGFNQLYGSIPSGIGN 377
+ + +RVL + +L + L L N+L ++P +
Sbjct: 431 LENSVLKMEYADVRVLHLAHKDL-----TVLCHLEQLLLVTHLDLSHNRL-RALPPALAA 484
Query: 378 LVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG-KIPSTLGNLSSLSEIVLSN 436
L L +L N + + + L LQ L N L + L + L
Sbjct: 485 LRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542
Query: 437 NNLS 440
N+L
Sbjct: 543 NSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-07
Identities = 46/286 (16%), Positives = 99/286 (34%), Gaps = 15/286 (5%)
Query: 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKI 219
+S + L+ S L + + + L + ++ + S + + +
Sbjct: 250 VSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASL 309
Query: 220 PPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLE 279
+ +F V ++ S +Q L + + D LS K
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKE------CVLLKDRPECWCRDSATDEQLFRCELSVE-KST 362
Query: 280 VIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDE--MGFINSLANCSKLRVLSF 337
V+Q S + L +IL L ++ + + ++L +R
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422
Query: 338 GRNQFRGVLPHSIT-NLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIP 396
+ + +L +S+ + ++VL L L ++ + L+ + L + N+ + +P
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNR-LRALP 479
Query: 397 QEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
+ L L+ L N + + NL L E++L NN L
Sbjct: 480 PALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQS 523
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 5/116 (4%)
Query: 324 NSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLY 382
+ + KLR + NQ L L L L N++ +P + L +L
Sbjct: 50 GAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQ 107
Query: 383 LLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437
LL + N+ I + + L NL L N T L ++ + L+ N
Sbjct: 108 LLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 333 RVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQF 391
+ +N + + P + + +L+ + L NQ+ + L +L L + N+
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNK- 91
Query: 392 IGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
I +P+ + L +LQ L N + +L +L+ + L +N L +
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 20/170 (11%)
Query: 86 REINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLGQNKL 143
EI L NTI+ IPP F +L + L+NN + ++ + L L L NK+
Sbjct: 35 TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92
Query: 144 VGSIPFEFVF--LYKLKGLSLHKNNLTGGISPFL-GNLTFLELVSLSYNSFEGNIPDSLG 200
+P +F L+ L+ L L+ N + + +L L L+SL N + +
Sbjct: 93 T-ELPKS-LFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Query: 201 QLKELKSLAIGVNNLSGKIPPSIC--NLSFLVNFSVSQNQIHGSLPSCLG 248
L+ ++++ + N P IC +L +L ++ + N I S C
Sbjct: 150 PLRAIQTMHLAQN-------PFICDCHLKWLADY-LHTNPIETSGARCTS 191
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 5e-07
Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 29/167 (17%)
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLE 182
IP NL +T + L QN + P F KL+ + L N ++
Sbjct: 26 IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-------------- 69
Query: 183 LVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHG 241
L+ ++F+G L+ L SL + N ++ ++P S+ L L ++ N+I+
Sbjct: 70 --ELAPDAFQG--------LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN- 117
Query: 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288
L + NL + N + S ++ + +A N F
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 351 TNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGL 408
TNL + + L N + IP G L + + NQ I + + L +L L
Sbjct: 28 TNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSL 85
Query: 409 DFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
GN + S L SL ++L+ N ++ +
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-08
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 330 SKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQ 388
+LR ++F N+ + + S + + L N+L ++ + L +L L +
Sbjct: 57 PQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRL-ENVQHKMFKGLESLKTLMLRS 114
Query: 389 NQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437
N+ I + + L +++ L N + P L SLS + L N
Sbjct: 115 NR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 81 NLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSL 138
L LR+IN +N I +I F + + L +N L + + L L L
Sbjct: 55 KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLML 112
Query: 139 GQNKLVGSIPFEFVF--LYKLKGLSLHKNNLT---GGISPFLGNLTFLELVS 185
N++ + F L ++ LSL+ N +T G L +L+ L L++
Sbjct: 113 RSNRIT-CVG-NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 4/112 (3%)
Query: 333 RVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQF 391
L N+F + I QL+ + N++ I G + + + N+
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNR- 92
Query: 392 IGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
+ + +M L +L+ L N + + LSS+ + L +N ++ V
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 351 TNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGL 408
++ L L N+ +GI L L + N+ I I + + +
Sbjct: 28 EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEI 86
Query: 409 DFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440
N L SL ++L +N ++
Sbjct: 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-07
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
Query: 76 SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTV 135
+ N RE++L I I L + +A+ ++N + K+ RL
Sbjct: 12 AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKT 68
Query: 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT--GGISPFLGNLTFLELVSLSYN 189
L + N++ L L L L N+L G + P L +L L + + N
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 7e-05
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 4/109 (3%)
Query: 101 PEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGL 160
++ R L L + I + + + N++ F L +LK L
Sbjct: 13 AQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLDGFPL--LRRLKTL 69
Query: 161 SLHKNNLTGGISPFLGNLTFLELVSLSYNSFEG-NIPDSLGQLKELKSL 208
++ N + L L + L+ NS D L LK L L
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 71 LSGSLSPHIGNL----SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPAN 126
L G P I NL I+ DN I+ ++ F L RL+ L + NN +
Sbjct: 26 LRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGL 83
Query: 127 LSYCSRLTVLSLGQNKL--VGSIPFEFVFLYKLKGLSLHKNNLT 168
LT L L N L +G + L L L + +N +T
Sbjct: 84 DQALPDLTELILTNNSLVELGDLD-PLASLKSLTYLCILRNPVT 126
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 9e-04
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 11/113 (9%)
Query: 154 LYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYN---SFEGNIPDSLGQLKELKSLAI 210
+ + L L + I L + + S N +G L+ LK+L +
Sbjct: 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDG-----FPLLRRLKTLLV 71
Query: 211 GVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGL-NFPNLKFFQIDQN 262
N + L L ++ N + L L + +L + I +N
Sbjct: 72 NNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRN 123
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 71/407 (17%), Positives = 132/407 (32%), Gaps = 51/407 (12%)
Query: 85 LREINLMDNTIQGEIPPEFGRLFR-LEALFLANNSL----VGKIPANLSYCSRLTVLSLG 139
++ +++ + E L + + + L + L I + L L L+L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 140 QNKL----VGSIPFEF-VFLYKLKGLSLHKNNLT----GGISPFLGNLTFLELVSLSYNS 190
N+L V + K++ LSL LT G +S L L L+ + LS N
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124
Query: 191 FEGNIPDSLGQLKE-----LKSLAIGVNNLSGK----IPPSICNLSFLVNFSVSQNQIHG 241
L + L+ L + +LS + + +VS N I+
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184
Query: 242 S----LPSCLGLNFPNLKFFQIDQNFFT----GSIPVSLSNASKLEVIQIANNSFSGKFS 293
+ L L + L+ +++ T + +++ + L + + +N
Sbjct: 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244
Query: 294 VNFGGMKNLSHLILQSSNLGS---GESDEMGFINSLANCSKLRVLSFGRNQFR--GV--L 346
L++ + L L+ LS N+ G L
Sbjct: 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304
Query: 347 PHSITNLSSQLQVLFLGFNQL----YGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKL 402
++ QL+ L++ S + L L + N+ +E+ +
Sbjct: 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364
Query: 403 L-----NLQGLDFGGNHFSGK----IPSTLGNLSSLSEIVLSNNNLS 440
L L+ L S + +TL SL E+ LSNN L
Sbjct: 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 81 NLSFLREINLMDNTIQ-GEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLG 139
S ++E+ L ++ G++ LE L N L I ANL ++L L L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72
Query: 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLT--GGISPFLGNLTFLELVSLSYN 189
N++ G + L L+L N + I P L L L+ + L
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 8e-06
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 109 LEALFLANNSL-VGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNL 167
++ L L N+ GK+ L LS L SI L KLK L L N +
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRV 76
Query: 168 TGGISPFLGNLTFLELVSLSYNSFEG-NIPDSLGQLKELKSL 208
+GG+ L ++LS N + + + L +L+ LKSL
Sbjct: 77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 81 NLSFLREINLMDNTIQ-GEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLG 139
+ +RE+ L + G+I LE L L N L+ + +NL +L L L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79
Query: 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLT--GGISPFLGNLTFLELVSLSYN 189
+N++ G + L L L+L N L + P L L L+ + L
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNC 130
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 333 RVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQF 391
L N+ + + L L L NQL I ++ L + +N+
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENK- 89
Query: 392 IGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437
I I +M L L+ L+ N S +P + +L+SL+ + L++N
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 86 REINLMDNTIQGEIPPE--FGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLGQNK 142
E+ L DN + I + FGRL L L L N L I N S + L LG+NK
Sbjct: 32 TELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENK 89
Query: 143 LVGSIPFEFVF--LYKLKGLSLHKNNLTG---GISPFLGNLTFLELVS 185
+ I +F L++LK L+L+ N ++ G L +LT L L S
Sbjct: 90 I-KEIS-NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 77 PHIGNLSFLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVGKIPAN-LSYCSRLT 134
H+ L E+ + + + L L L + + L + + + RL+
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83
Query: 135 VLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168
L+L N L S+ ++ V L+ L L N L
Sbjct: 84 RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 4e-06
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
Query: 370 SIPSGIGNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSS 428
+ NL L +E Q + + L L+ L + P
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 429 LSEIVLSNNNLSGVIPS 445
LS + LS N L +
Sbjct: 82 LSRLNLSFNALESLSWK 98
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 347 PHSITNLSSQLQVLFLGFNQLYGSIPSG-IGNLVNLYLLAMEQNQFIGTIPQEM-GKLLN 404
H + L L++ Q + + L L L + ++ + + +
Sbjct: 24 LHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPR 81
Query: 405 LQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNL 439
L L+ N T+ L SL E+VLS N L
Sbjct: 82 LSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 8e-05
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 98 EIPPEFGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVLSLGQNKLVGSIPFE-FVFLY 155
+ L L++ N + + L L L++ ++ L + + F F
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80
Query: 156 KLKGLSLHKNNLT 168
+L L+L N L
Sbjct: 81 RLSRLNLSFNALE 93
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 330 SKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQ 388
+ L L G N+ + LP+ + N + L L L NQL S+P+G+ L L LA+
Sbjct: 52 TSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNT 109
Query: 389 NQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437
NQ + ++P + KL L+ L N L+SL I L +N
Sbjct: 110 NQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
LDL + +L + L+ L ++ L N +Q F +L L L L+ N L +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91
Query: 124 PA----NLSYCSRLTVLSLGQNKLVGSIPFEFVF--LYKLKGLSLHKNNLTG---GISPF 174
P L+ +L L+L N+L S+P + VF L +LK L L++N L G+
Sbjct: 92 PNGVFDKLT---QLKELALNTNQL-QSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 175 LGNLTFLEL 183
L +L ++ L
Sbjct: 147 LTSLQYIWL 155
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 296 FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS 355
+ NL++LIL + L S + G + L + L+ L NQ + LP + + +
Sbjct: 81 LKELTNLTYLILTGNQLQSLPN---GVFDKL---TNLKELVLVENQLQ-SLPDGVFDKLT 133
Query: 356 QLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGN 413
L L L NQL S+P G+ L NL L + NQ ++P+ + KL L+ L N
Sbjct: 134 NLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQN 191
Query: 414 HFSGKIPS-TLGNLSSLSEIVLSNN 437
+P L+SL I L +N
Sbjct: 192 QLKS-VPDGVFDRLTSLQYIWLHDN 215
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 48/193 (24%), Positives = 73/193 (37%), Gaps = 19/193 (9%)
Query: 101 PEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVF--LYKLK 158
L ++ + N+ + + + Y + L+LG NKL I L L
Sbjct: 35 VTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH-DIS---ALKELTNLT 88
Query: 159 GLSLHKNNLT---GGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNL 215
L L N L G+ L NL L LV S + D L L L + N L
Sbjct: 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN---LAHNQL 145
Query: 216 SGKIPPSIC-NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPV-SLS 273
+P + L+ L +S NQ+ SLP + LK ++ QN S+P
Sbjct: 146 Q-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 202
Query: 274 NASKLEVIQIANN 286
+ L+ I + +N
Sbjct: 203 RLTSLQYIWLHDN 215
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 333 RVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQF 391
L N+ + LPH + + +QL L L NQ+ S+P G+ L L +L + +N+
Sbjct: 31 TRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKL 88
Query: 392 IGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437
++P + KL L+ L N L+SL +I L N
Sbjct: 89 -QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLGQNKLV 144
+ L N +Q F +L +L L L+ N + +P + ++LT+L L +NKL
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKL- 88
Query: 145 GSIPFEFVF--LYKLKGLSLHKNNLTG---GISPFLGNLTFLEL 183
S+P VF L +LK L+L N L GI L +L + L
Sbjct: 89 QSLP-NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLGQNKLV 144
E+ L N +P E L + L+NN + + S ++L L L N+L
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL- 90
Query: 145 GSIPFEFVF--LYKLKGLSLHKNNLTG---GISPFLGNLTFLEL 183
IP F L L+ LSLH N+++ G L L+ L +
Sbjct: 91 RCIP-PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 333 RVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI-GNLVNLYLLAMEQNQF 391
L NQF ++P ++N L ++ L N++ ++ + N+ L L + N+
Sbjct: 34 TELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNR- 89
Query: 392 IGTIPQEM-GKLLNLQGLDFGGNHFSGKIP-STLGNLSSLSEIVLSNN 437
+ IP L +L+ L GN S +P +LS+LS + + N
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 295 NFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLS 354
+K HL L ++N+ I+SL+ LR+LS GRN + + ++ ++
Sbjct: 43 TLSTLKACKHLALSTNNIEK--------ISSLSGMENLRILSLGRNLIKKI--ENLDAVA 92
Query: 355 SQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIP--QEMGKLLNLQGLDFGG 412
L+ L++ +NQ+ + SGI LVNL +L M N+ I ++ L L+ L G
Sbjct: 93 DTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAG 149
Query: 413 N 413
N
Sbjct: 150 N 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 122 KIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL 181
K+ A LS L+L N + + L+ LSL +N + I L
Sbjct: 39 KMDATLSTLKACKHLALSTNNIEKISSLS--GMENLRILSLGRNLIK-KIENLDAVADTL 95
Query: 182 ELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216
E + +SYN ++ + +L L+ L + N ++
Sbjct: 96 EELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT 128
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 5e-05
Identities = 56/386 (14%), Positives = 111/386 (28%), Gaps = 137/386 (35%)
Query: 6 ITLLHVAAFEEGDRAALQAFKSMIAHDPQ-RILNSWNDSRHFCEWDGVTCGRRHRRVI-- 62
+ LL+V + A AF + +IL + +R D ++ +
Sbjct: 248 LVLLNVQ-----NAKAWNAF------NLSCKILLT---TRFKQVTDFLSAATTTHISLDH 293
Query: 63 ---------ALDLMSKALSGSLS--PH------------IGNL--------SFLREINL- 90
L+ K L P I + +N
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 91 -MDNTIQGEI----PPEFGRLFRLEALFLANNSLVGKIPANL---------SYCSRLTVL 136
+ I+ + P E+ ++F ++F + IP L + V
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPS---A-HIPTILLSLIWFDVIKSDVMVVVN 409
Query: 137 SLGQNKLVGSIPFEFVF----LY-KLKG-----LSLHKNNLTGGISPFLGNLTFLELVSL 186
L + LV P E +Y +LK +LH+ + ++
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--------------SIVD---- 451
Query: 187 SYNSFEGNIPDSLGQLKE-----------LKSLAIGVNNLSGKIP--PSI-CNLSFLVNF 232
YN + D L LK++ ++ + + FL
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-----EHPERMTLFRMVFLDFRFL--- 503
Query: 233 SVSQNQI-HGSLPSCLGLNFPN----LKFFQIDQNFFTGSIPVSLSNASKLE--VIQIAN 285
+ +I H S + N LKF+ + + + P + + + +I
Sbjct: 504 ---EQKIRHDSTAWNASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 286 NSFSGKFSVNFGGMKNLSHLILQSSN 311
N K++ +L + L + +
Sbjct: 558 NLICSKYT-------DLLRIALMAED 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 79/537 (14%), Positives = 159/537 (29%), Gaps = 139/537 (25%)
Query: 1 MLLFFITLLH-----VAAF-EEGDRAALQAFKSMIAH---DPQRILNS--------WNDS 43
L F TLL V F EE R + S I P + +ND+
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 44 RHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNL---------SFLREINLMDNT 94
+ F +++ V+ R + + L +AL L P L +++ +
Sbjct: 124 QVFAKYN-VS---RLQPYLKL---RQALL-ELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 95 IQGEIPPE-----FGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPF 149
+Q ++ + E + L+ +I N + SR S +I
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSS--------NIKL 225
Query: 150 EFVFLY-KLKGL---SLHKNNL--------TGGISPFLGN----LT--------FLELVS 185
+ +L+ L ++N L + F + LT FL +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 186 LSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLV--------------- 230
++ S + + +L + L ++ +P + +
Sbjct: 286 TTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 231 -NFS-VSQNQIHGSLPSCL-GLN-------FPNLKFFQIDQNFFTGSIPVSL-----SNA 275
N+ V+ +++ + S L L F L F + IP L +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLIWFDV 399
Query: 276 SKLEVIQIANNSFSGKFSVNFGGMKNLS---HLILQSSNLGSGESDEM--GFINSLANCS 330
K +V+ + N K+S+ K + I + + ++
Sbjct: 400 IKSDVMVVVNKLH--KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 331 KLRVLSFGRNQFRG----VLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAM 386
+ H + N+ + F ++ ++ L
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNI--EHPERMTLFRMVF----------LDFRFL-- 503
Query: 387 EQNQFI--GTIPQEMGKLLN-LQGLDFGGNHFSGKIPSTLGNLSSLSEIVLS-NNNL 439
+ + T G +LN LQ L F + P ++++ + + NL
Sbjct: 504 -EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 40/232 (17%)
Query: 74 SLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFR----LEALFLANNSL---------- 119
L + L + L DN LE L+L NN L
Sbjct: 85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 144
Query: 120 ---VGKIPANLSYCSRLTVLSLGQNKL----VGSIPFEFVFLYKLKGLSLHKNNLTG-GI 171
+ L + G+N+L + F L + + +N + GI
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204
Query: 172 SPFLGNL----TFLELVSLSYNSF--EG--NIPDSLGQLKELKSLAIGVNNLSGKIPPSI 223
L L+++ L N+F G + +L L+ L + LS + ++
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264
Query: 224 CN-LSFLVNFS-----VSQNQIHG----SLPSCLGLNFPNLKFFQIDQNFFT 265
+ S L N + N+I +L + + P+L F +++ N F+
Sbjct: 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 56/332 (16%), Positives = 102/332 (30%), Gaps = 69/332 (20%)
Query: 157 LKGLSLHKNNLTG----GISPFLGNLTFLELVSLSYNSF--EG--NIPDSLGQLKELKSL 208
++G SL + +T + L ++ + LS N+ E + +++ K+L+
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 209 ---AIGVNNLSGKIPP-------SICNLSFLVNFSVSQNQIHG----SLPSCLGLNFPNL 254
I + +IP ++ L +S N L L + L
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-TPL 124
Query: 255 KFFQIDQN-------------FFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGM-- 299
+ + N ++ NA L I N +
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184
Query: 300 --KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQF--RGV--LPHSITNL 353
+ L + + + + E E + LA C +L+VL N F G L ++ +
Sbjct: 185 SHRLLHTVKMVQNGIRP-EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243
Query: 354 SSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGN 413
+ L+ L L L G +V+ + +N LQ L N
Sbjct: 244 PN-LRELGLNDCLLS---ARGAAAVVD--AFSKLENI-------------GLQTLRLQYN 284
Query: 414 HFSGKIPSTLG-----NLSSLSEIVLSNNNLS 440
TL + L + L+ N S
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 445 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.98 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.98 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.83 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.82 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.8 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.76 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.75 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.75 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.75 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.74 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.73 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.73 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.73 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.73 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.72 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.71 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.64 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.64 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.63 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.62 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.61 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.61 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.61 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.6 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.59 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.59 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.57 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.57 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.57 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.56 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.54 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.54 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.52 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.5 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.47 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.46 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.41 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.38 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.35 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.35 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.35 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.34 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.32 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.31 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.3 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.16 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.07 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.05 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.04 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.02 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.0 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.71 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.66 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.56 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.23 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.22 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.02 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.77 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.77 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.31 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.69 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-52 Score=429.33 Aligned_cols=424 Identities=29% Similarity=0.436 Sum_probs=280.4
Q ss_pred hhccChhhHHHHHHHHHhccCCCCCCCCCCCCCCCCcceeeeEeCCCCCcEEEEEcCCCCCccc---cc-----------
Q 042446 11 VAAFEEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGS---LS----------- 76 (445)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~---~~----------- 76 (445)
.++..+.+++|+.+||+.+. ||. .++.|..+.+||.|.||+|+ ..+|+.++++++.+.+. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred cccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 44456688899999999997 888 88999988899999999998 37999999999988775 33
Q ss_pred ------------ccccCCCCCCEEECCCCcccccCCc--cccCCCCCCEEECCCCcCCCCCCccC-cCCCCCCEEEccCC
Q 042446 77 ------------PHIGNLSFLREINLMDNTIQGEIPP--EFGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLGQN 141 (445)
Q Consensus 77 ------------~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~l~~~~i~~~~p~~l-~~l~~L~~L~l~~~ 141 (445)
..+..+++|++|+|++|.+.+.+|. .++.+++|++|++++|.+.+..|..+ .++++|++|++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 4677778888888888888877777 78888888888888888876666655 67788888888888
Q ss_pred cCcccCCcc---ccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 142 KLVGSIPFE---FVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 142 ~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
.+.+..+.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+. ++++++|++|++++|.+.+.
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 777655544 5566666666666665554332 24556666666666666544444 56666666666666666555
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCC-CCCCEEECccCcCcccCccccc
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNA-SKLEVIQIANNSFSGKFSVNFG 297 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~ 297 (445)
+|..+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+.+..+..+.
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 5555556666666666666555444433 24555555555555554444444432 5555555555555544455555
Q ss_pred CCCCCCEEEccCCcCCCC-CCC------------------CCcccccccCCC-CCcEEEccCCcceecCChhhhhc-ccc
Q 042446 298 GMKNLSHLILQSSNLGSG-ESD------------------EMGFINSLANCS-KLRVLSFGRNQFRGVLPHSITNL-SSQ 356 (445)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~-~~~------------------~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-~~~ 356 (445)
.+++|++|++++|.+.+. +.. ...++..+..++ +|++|++++|.+++.++..+... .++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 555555555555544320 000 001223333443 55555555555554444444331 125
Q ss_pred CcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccC
Q 042446 357 LQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSN 436 (445)
Q Consensus 357 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~ 436 (445)
|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|++|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 77777777777666777777777788888888877777777777788888888888887777777777788888888888
Q ss_pred CcceecCC
Q 042446 437 NNLSGVIP 444 (445)
Q Consensus 437 n~~~~~~p 444 (445)
|++++.+|
T Consensus 476 N~l~~~~p 483 (768)
T 3rgz_A 476 NDLTGEIP 483 (768)
T ss_dssp SCCCSCCC
T ss_pred CcccCcCC
Confidence 88877766
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=413.45 Aligned_cols=417 Identities=20% Similarity=0.263 Sum_probs=275.0
Q ss_pred hhccChhhHHHHHHHHHhccCCCCCCCC-------CCCCCCCCcce---eeeEeCCCCCcEEEEEcCCCCCccccccccc
Q 042446 11 VAAFEEGDRAALQAFKSMIAHDPQRILN-------SWNDSRHFCEW---DGVTCGRRHRRVIALDLMSKALSGSLSPHIG 80 (445)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~w~~~~~~c~~---~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~ 80 (445)
.++++..|..|+.+++++...++|.... .|..+.++|.| .||.|+.. .+|+.++++++.+.|.+|+.++
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~ 102 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIG 102 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGG
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHh
Confidence 3455668999999999999877776544 89999999999 99999876 7999999999999999999999
Q ss_pred CCCCCCEEECCCCcc-----------------------------------------------------------------
Q 042446 81 NLSFLREINLMDNTI----------------------------------------------------------------- 95 (445)
Q Consensus 81 ~l~~L~~L~L~~~~~----------------------------------------------------------------- 95 (445)
.+++|++|+|++|.+
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 182 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence 999999999998843
Q ss_pred -------------cccCCccccCCCCCCEEECCCCcCCCC-----------------CCccCc--CCCCCCEEEccCCcC
Q 042446 96 -------------QGEIPPEFGRLFRLEALFLANNSLVGK-----------------IPANLS--YCSRLTVLSLGQNKL 143 (445)
Q Consensus 96 -------------~~~~~~~~~~~~~L~~L~l~~~~i~~~-----------------~p~~l~--~l~~L~~L~l~~~~~ 143 (445)
++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+
T Consensus 183 l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l 261 (636)
T 4eco_A 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261 (636)
T ss_dssp CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred hhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence 33 677889999999999999999964 898988 999999999999998
Q ss_pred cccCCccccCCCCCCEEeccccc-CCC-CCCccCCCC------CCcceEeecccccccccCc--ccCCCCCCCEEEccCC
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNN-LTG-GISPFLGNL------TFLELVSLSYNSFEGNIPD--SLGQLKELKSLAIGVN 213 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~n 213 (445)
.+.+|..++++++|++|++++|. +++ .+|..+.++ ++|++|++++|.++ .+|. .++++++|++|++++|
T Consensus 262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 88899999999999999999998 776 566666554 77777777777777 6666 6777777777777777
Q ss_pred CCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCC-ccEEEccCCcCcccCcccCcCCC--CCCEEECccCcCcc
Q 042446 214 NLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPN-LKFFQIDQNFFTGSIPVSLSNAS--KLEVIQIANNSFSG 290 (445)
Q Consensus 214 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~ 290 (445)
.+.+.+| .+..+++|+.|++++|.+. .+|..+.. +++ |++|++++|.++ .+|..+..++ +|++|++++|.+.+
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhh-hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 7765566 5555555555555555554 44444433 444 555555555554 3444443322 45555555555444
Q ss_pred cCccccc-------------------------------CCCCCCEEEccCCcCCCCCCCCCcc-cccccCCCCCcEEEcc
Q 042446 291 KFSVNFG-------------------------------GMKNLSHLILQSSNLGSGESDEMGF-INSLANCSKLRVLSFG 338 (445)
Q Consensus 291 ~~~~~l~-------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~ 338 (445)
..+..+. .+++|++|++++|.+...+...+.. ...+..+++|++|+++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc
Confidence 4444443 4444555555554444322211100 0001222355555555
Q ss_pred CCcceecCChhhh--hccccCcEEEcccCcccccCCccccCccCCCeeeC------ccCcceecCChhhhCCCCCCeEEc
Q 042446 339 RNQFRGVLPHSIT--NLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAM------EQNQFIGTIPQEMGKLLNLQGLDF 410 (445)
Q Consensus 339 ~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~n~~~~~~~~~~~~~~~L~~L~l 410 (445)
+|.++ .+|..+. .++ +|++|++++|++++ +|..+..+++|+.|++ ++|.+.+.+|..+..+++|+.|+|
T Consensus 497 ~N~l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 497 FNKLT-KLSDDFRATTLP-YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp SSCCC-BCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CCcCC-ccChhhhhccCC-CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence 55555 4444443 333 55555555555553 4555555555555555 234444455555555555555555
Q ss_pred cCCcccccccccccCCCCCCeEEccCCcce
Q 042446 411 GGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 411 ~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
++|+++ .+|..+. ++|++|++++|++.
T Consensus 574 s~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 574 GSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 555553 4444433 45555555555543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-48 Score=397.69 Aligned_cols=380 Identities=34% Similarity=0.549 Sum_probs=318.7
Q ss_pred CcEEEEEcCCCCCcccccccccCC-CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcc-CcCCCCCCEE
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNL-SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVL 136 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~-l~~l~~L~~L 136 (445)
+.++.++++++.+++.+|..+... ++|++|++++|.+++..|..++.+++|++|++++|.+.+.+|.. +..+++|++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 455666666666665666666554 77777777777777667777777777777777777776556654 6677777777
Q ss_pred EccCCcCcccCCccccCCC-CCCEEecccccCCCCCCccCCC--CCCcceEeecccccccccCcccCCCCCCCEEEccCC
Q 042446 137 SLGQNKLVGSIPFEFVFLY-KLKGLSLHKNNLTGGISPFLGN--LTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVN 213 (445)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 213 (445)
++++|.+.+..|..+.+++ +|++|++++|.+.+..+..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 7777777666676666665 7777777777776666666655 678888888888888888888999999999999999
Q ss_pred CCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCc
Q 042446 214 NLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFS 293 (445)
Q Consensus 214 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 293 (445)
.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+++..|..+.++++|++|++++|.+.+..+
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 998888999999999999999999998888888876 8999999999999998889999999999999999999998889
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhc--------------------
Q 042446 294 VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL-------------------- 353 (445)
Q Consensus 294 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-------------------- 353 (445)
.++..+++|++|++++|.+.+ .++..+..+++|+.|++++|.+++.+|..+...
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~------~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSG------NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEE------ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred hHHhcCCCCCEEECCCCcccC------cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence 999999999999999998876 466788899999999999999988887665321
Q ss_pred -------------------------------------------------cccCcEEEcccCcccccCCccccCccCCCee
Q 042446 354 -------------------------------------------------SSQLQVLFLGFNQLYGSIPSGIGNLVNLYLL 384 (445)
Q Consensus 354 -------------------------------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 384 (445)
.++|++|++++|.+++.+|..+..+++|+.|
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred cccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence 1368999999999999999999999999999
Q ss_pred eCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCCC
Q 042446 385 AMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445 (445)
Q Consensus 385 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 445 (445)
++++|.+++.+|..++.+++|+.|+|++|++++.+|..+.++++|++|++++|+++|.+|.
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999994
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-48 Score=396.65 Aligned_cols=412 Identities=19% Similarity=0.254 Sum_probs=277.3
Q ss_pred hhccChhhHHHHHHHHHhccCCCCCCCCCCCCCC-----CC--cce------------eeeEeCCCCCcEEEEEcCCCCC
Q 042446 11 VAAFEEGDRAALQAFKSMIAHDPQRILNSWNDSR-----HF--CEW------------DGVTCGRRHRRVIALDLMSKAL 71 (445)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~~~~~~~~~~~v~~l~l~~~~~ 71 (445)
.++....|.+|+.++++++. +| .|..+. ++ |.| .||.|+. ..+|+.++|+++.+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA 335 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred ccccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence 45566789999999999985 44 564433 44 999 9999987 37999999999999
Q ss_pred cccccccccCCCCCCEEEC-CCCccccc----------------------------------------------------
Q 042446 72 SGSLSPHIGNLSFLREINL-MDNTIQGE---------------------------------------------------- 98 (445)
Q Consensus 72 ~~~~~~~l~~l~~L~~L~L-~~~~~~~~---------------------------------------------------- 98 (445)
.|.+|+.++.+++|++|+| ++|.+.+.
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 9999999999999999999 66643322
Q ss_pred ------------------------CCccccCCCCCCEEECCCCcCCC-----------------CCCccCc--CCCCCCE
Q 042446 99 ------------------------IPPEFGRLFRLEALFLANNSLVG-----------------KIPANLS--YCSRLTV 135 (445)
Q Consensus 99 ------------------------~~~~~~~~~~L~~L~l~~~~i~~-----------------~~p~~l~--~l~~L~~ 135 (445)
+|..++++++|++|++++|.+++ .+|..++ ++++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 67788999999999999999997 3888887 9999999
Q ss_pred EEccCCcCcccCCccccCCCCCCEEeccccc-CCC-CCCccCC-------CCCCcceEeecccccccccCc--ccCCCCC
Q 042446 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNN-LTG-GISPFLG-------NLTFLELVSLSYNSFEGNIPD--SLGQLKE 204 (445)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~--~l~~l~~ 204 (445)
|++++|.+.+.+|..+.++++|++|++++|. +.+ .+|..+. .+++|++|++++|.+. .+|. .+.++++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 9999999888999999999999999999997 776 5665443 4458888888888888 6777 7888888
Q ss_pred CCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCC-ccEEEccCCcCcccCcccCcCCCC--CCEE
Q 042446 205 LKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPN-LKFFQIDQNFFTGSIPVSLSNASK--LEVI 281 (445)
Q Consensus 205 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~~--L~~L 281 (445)
|++|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+.. +++ |+.|++++|.++ .+|..+..++. |+.|
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-cCchhhhccccCCCCEE
Confidence 888888888887 777 7777888888888888877 67766655 666 888888877776 45655544432 6666
Q ss_pred ECccCcCcccCc-----------------------------ccccCCCCCCEEEccCCcCCCCCCCCCccc-ccccCCCC
Q 042446 282 QIANNSFSGKFS-----------------------------VNFGGMKNLSHLILQSSNLGSGESDEMGFI-NSLANCSK 331 (445)
Q Consensus 282 ~l~~~~~~~~~~-----------------------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~~~~ 331 (445)
++++|.+.+..+ ..+..+++|+.|++++|.+...+...+... ..+..+++
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGG
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCC
Confidence 666666554322 112234444444444444443221111000 00122335
Q ss_pred CcEEEccCCcceecCChhhh--hccccCcEEEcccCcccccCCccccCccCCCeeeCcc------CcceecCChhhhCCC
Q 042446 332 LRVLSFGRNQFRGVLPHSIT--NLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQ------NQFIGTIPQEMGKLL 403 (445)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~~~~~~~ 403 (445)
|+.|++++|+++ .+|..+. .++ +|++|++++|.+++ +|..+..+++|+.|++++ |.+.+.+|..+..++
T Consensus 730 L~~L~Ls~N~L~-~lp~~l~~~~l~-~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 730 LTTIDLRFNKLT-SLSDDFRATTLP-YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp CCEEECCSSCCC-CCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred ccEEECCCCCCc-cchHHhhhccCC-CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 555555555554 4444443 333 55555555555553 444455555555555543 444444555555555
Q ss_pred CCCeEEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 404 NLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 404 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
+|+.|+|++|++ +.+|..+. ++|+.|+|++|++..
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 555555555555 24444432 355555555555443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-43 Score=352.13 Aligned_cols=383 Identities=20% Similarity=0.180 Sum_probs=256.7
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..+++++++++.+++..+..+.++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 67899999999999877889999999999999999999888999999999999999999999888899999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCC--EEEccCCCCc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELK--SLAIGVNNLS 216 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~n~~~ 216 (445)
++|.+.+..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..++.+++|+ +|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999866677789999999999999998864434445588888888888877755555555555555 5555555443
Q ss_pred ccC---------------------------------------------------------------------------Cc
Q 042446 217 GKI---------------------------------------------------------------------------PP 221 (445)
Q Consensus 217 ~~~---------------------------------------------------------------------------~~ 221 (445)
+.. +.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 222 22
Q ss_pred cCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccC-cccccCCC
Q 042446 222 SICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKF-SVNFGGMK 300 (445)
Q Consensus 222 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~ 300 (445)
.+..+++|+.|++++|.+. .+|..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+.+.. ...+..++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 2444555666666666555 45554433 556666666666555444444555555555555555443222 22344555
Q ss_pred CCCEEEccCCcCCCCC--CCCC------------------cccccccCCCCCcEEEccCCcceecCChh-hhhccccCcE
Q 042446 301 NLSHLILQSSNLGSGE--SDEM------------------GFINSLANCSKLRVLSFGRNQFRGVLPHS-ITNLSSQLQV 359 (445)
Q Consensus 301 ~L~~L~l~~~~~~~~~--~~~~------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~ 359 (445)
+|++|++++|.+.... ...+ ..+..+..+++|++|++++|.+++..+.. +..++ +|++
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~ 429 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-LLKV 429 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT-TCCE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc-cCCE
Confidence 5555555555443321 0000 11223445556666666666555443332 33333 6666
Q ss_pred EEcccCcccccCCccccCccCCCeeeCccCcceec---CChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccC
Q 042446 360 LFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGT---IPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSN 436 (445)
Q Consensus 360 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~ 436 (445)
|++++|.+++..+..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|++++..|..+..+++|++|++++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 66666666655566666677777777777766542 224566777777777777777766677777777777777777
Q ss_pred CcceecCC
Q 042446 437 NNLSGVIP 444 (445)
Q Consensus 437 n~~~~~~p 444 (445)
|++++..|
T Consensus 510 N~l~~~~~ 517 (606)
T 3t6q_A 510 NRLTSSSI 517 (606)
T ss_dssp SCCCGGGG
T ss_pred CccCcCCh
Confidence 77776554
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-42 Score=343.68 Aligned_cols=378 Identities=19% Similarity=0.158 Sum_probs=248.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
+++++++++++.+.+..|..+.++++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 56777777777777666667777777777777777777666667777777777777777766544555666666666666
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCcc--------------------------------------------
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPF-------------------------------------------- 174 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------------------------------------- 174 (445)
++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHH
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHH
Confidence 666665422223333555555555555443222222
Q ss_pred ---------------------------------------------------------CCCCCCcceEeecccccccccCc
Q 042446 175 ---------------------------------------------------------LGNLTFLELVSLSYNSFEGNIPD 197 (445)
Q Consensus 175 ---------------------------------------------------------l~~~~~L~~L~l~~~~~~~~~~~ 197 (445)
+..+++|++|++++|.++ .+|.
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~ 295 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS
T ss_pred HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh
Confidence 333344444444444444 3444
Q ss_pred ccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccC--cccCcCC
Q 042446 198 SLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSI--PVSLSNA 275 (445)
Q Consensus 198 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~ 275 (445)
.+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++......+++|++|++++|.+.+.. +..+..+
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 44444455555555554443334444445555555555554444444433334666666666666665443 4556667
Q ss_pred CCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccc
Q 042446 276 SKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS 355 (445)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 355 (445)
++|++|++++|.+.+..+..+..+++|++|++++|.+.... ....+..+++|++|++++|.+.+..+..+..++
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 449 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-----AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP- 449 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT-----TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc-----cchhhhCcccCCEEECCCCccCCcCHHHHhCCC-
Confidence 77777777777766666666777777777777777665422 122367788899999999988876777777766
Q ss_pred cCcEEEcccCccccc---CCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeE
Q 042446 356 QLQVLFLGFNQLYGS---IPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEI 432 (445)
Q Consensus 356 ~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l 432 (445)
+|++|++++|.+++. .+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+.++++| +|
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 899999999888752 23567788889999999988887778888888889999999998888888888888888 88
Q ss_pred EccCCcceecCC
Q 042446 433 VLSNNNLSGVIP 444 (445)
Q Consensus 433 ~l~~n~~~~~~p 444 (445)
++++|++++.+|
T Consensus 529 ~L~~N~l~~~~~ 540 (606)
T 3t6q_A 529 NLASNHISIILP 540 (606)
T ss_dssp ECCSSCCCCCCG
T ss_pred ECcCCcccccCH
Confidence 888888887665
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=342.22 Aligned_cols=370 Identities=23% Similarity=0.217 Sum_probs=254.8
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
+++++++++++.+++..+..+.++++|++|++++|.+++..+.+|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67889999999998777778899999999999999998777888899999999999999998777888999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccCCCC--------------
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLK-------------- 203 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~-------------- 203 (445)
++|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9998886666778889999999999998875 5688888888888888888877654333222111
Q ss_pred -------------CCCEEEccC----------------------------------------------------------
Q 042446 204 -------------ELKSLAIGV---------------------------------------------------------- 212 (445)
Q Consensus 204 -------------~L~~L~l~~---------------------------------------------------------- 212 (445)
+|++|++++
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 233333333
Q ss_pred -----------------------CCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCC-------
Q 042446 213 -----------------------NNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQN------- 262 (445)
Q Consensus 213 -----------------------n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~------- 262 (445)
+.+. .++ .+..+++|++|++++|.+ +.+|.. .+++|++|++++|
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~~ 345 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISFK 345 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEECC
T ss_pred ccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCccchh
Confidence 3322 222 455566777777777777 466632 2555555555554
Q ss_pred ---------------cCccc--CcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccccc
Q 042446 263 ---------------FFTGS--IPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINS 325 (445)
Q Consensus 263 ---------------~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 325 (445)
.+++. .+..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+..... ...
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~ 419 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTE-----FSA 419 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTT-----TTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccC-----hhh
Confidence 43322 133344445555555555544432 2445555556666666555544211 124
Q ss_pred ccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccc-cCCccccCccCCCeeeCccCcceecCChhhhCCCC
Q 042446 326 LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYG-SIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLN 404 (445)
Q Consensus 326 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 404 (445)
+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++ ..|..+..+++|+.|++++|.+.+..|..+..+++
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 56677777777777777766666666665 77777777777765 35666777777777777777777666777777777
Q ss_pred CCeEEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 405 LQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 405 L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
|+.|++++|++++.+|..+..+++|++|++++|++++
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 7777777777776667777777777777777777764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=349.75 Aligned_cols=330 Identities=19% Similarity=0.220 Sum_probs=235.0
Q ss_pred ccccccCCCCCCEEECCCCccccc-----------------CCcccc--CCCCCCEEECCCCcCCCCCCccCcCCCCCCE
Q 042446 75 LSPHIGNLSFLREINLMDNTIQGE-----------------IPPEFG--RLFRLEALFLANNSLVGKIPANLSYCSRLTV 135 (445)
Q Consensus 75 ~~~~l~~l~~L~~L~L~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~ 135 (445)
+|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 666777788888888888887764 777777 7888888888888777777777777788888
Q ss_pred EEccCCc-Ccc-cCCccccCC------CCCCEEecccccCCCCCCc--cCCCCCCcceEeecccccccccC---------
Q 042446 136 LSLGQNK-LVG-SIPFEFVFL------YKLKGLSLHKNNLTGGISP--FLGNLTFLELVSLSYNSFEGNIP--------- 196 (445)
Q Consensus 136 L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~--------- 196 (445)
|++++|+ +++ .+|..++++ ++|++|++++|.+. .+|. .+.++++|++|++++|.+.+.+|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence 8888776 665 566555554 66666666666666 5555 56666666666666666654444
Q ss_pred -------------cccCCCCC-CCEEEccCCCCcccCCccCcCCC--CCcEEEccCCcCCCCCCccccc------CCCCc
Q 042446 197 -------------DSLGQLKE-LKSLAIGVNNLSGKIPPSICNLS--FLVNFSVSQNQIHGSLPSCLGL------NFPNL 254 (445)
Q Consensus 197 -------------~~l~~l~~-L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~------~~~~L 254 (445)
..+.++++ |++|++++|.++ .+|..+.... +|+.|++++|.+.+..|..+.. .+++|
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 33444444 555555555555 4444444332 5555555555555544444430 24567
Q ss_pred cEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCC-------CCCCEEEccCCcCCCCCCCCCccccccc
Q 042446 255 KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGM-------KNLSHLILQSSNLGSGESDEMGFINSLA 327 (445)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 327 (445)
++|++++|.+++..+..+..+++|++|++++|.++......+... ++|++|++++|.+.. ++..+.
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-------lp~~~~ 508 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-------LSDDFR 508 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-------CCGGGS
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-------cChhhh
Confidence 777777777763323334557888888888888874443344333 399999999999875 344565
Q ss_pred --CCCCCcEEEccCCcceecCChhhhhccccCcEEEc------ccCcccccCCccccCccCCCeeeCccCcceecCChhh
Q 042446 328 --NCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL------GFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEM 399 (445)
Q Consensus 328 --~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 399 (445)
.+++|++|++++|++++ +|..+..++ +|++|++ ++|.+.+.+|..+..+++|+.|++++|.+ +.+|..+
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~-~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSS-TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCS-SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred hccCCCcCEEECCCCCCCC-cChhhhcCC-CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence 89999999999999996 888888877 9999999 45777888999999999999999999999 4888876
Q ss_pred hCCCCCCeEEccCCccccc
Q 042446 400 GKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 400 ~~~~~L~~L~l~~n~i~~~ 418 (445)
. ++|+.|++++|++...
T Consensus 586 ~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 586 T--PNISVLDIKDNPNISI 602 (636)
T ss_dssp C--TTCCEEECCSCTTCEE
T ss_pred h--CcCCEEECcCCCCccc
Confidence 5 8999999999987643
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=338.81 Aligned_cols=376 Identities=22% Similarity=0.235 Sum_probs=262.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..++.++++++.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45777777777777666667777777777777777777666667777777777777777777666667777777777777
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccCC----------------
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQ---------------- 201 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~---------------- 201 (445)
++|.+....+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7777764444456777777777777777665 35666777777777777776655333222222
Q ss_pred --------------------------------------------------------------------------------
Q 042446 202 -------------------------------------------------------------------------------- 201 (445)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (445)
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence
Q ss_pred -------------CCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccc-------------------c
Q 042446 202 -------------LKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLG-------------------L 249 (445)
Q Consensus 202 -------------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-------------------~ 249 (445)
+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.... .
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccc
Confidence 344444444444444 344444444 4555555554443 3322110 1
Q ss_pred CCCCccEEEccCCcCcccC--cccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccccccc
Q 042446 250 NFPNLKFFQIDQNFFTGSI--PVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLA 327 (445)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 327 (445)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+..... ...+.
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-----~~~~~ 418 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE-----FSVFL 418 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTT-----SCTTT
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccc-----hhhhh
Confidence 2455556666555555322 44455666666677666666544333 6677777777777777655321 13567
Q ss_pred CCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCccc-ccCCccccCccCCCeeeCccCcceecCChhhhCCCCCC
Q 042446 328 NCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLY-GSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQ 406 (445)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 406 (445)
.+++|++|++++|.+.+..+..+..++ +|++|++++|.++ +.+|..+..+++|+.|++++|++.+..|..+..+++|+
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCC-cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 889999999999998877777777776 8999999999987 46788889999999999999999988788999999999
Q ss_pred eEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 407 GLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 407 ~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
.|++++|++++..+..+.++++|++|++++|++++..|
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 99999999997777888999999999999999998776
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=338.99 Aligned_cols=368 Identities=20% Similarity=0.189 Sum_probs=268.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
+.+++++++++.+++..+..+..+++|++|++++|.+++..+.+++.+++|++|++++|.+.+..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57999999999999888888999999999999999999888889999999999999999999777777999999999999
Q ss_pred cCCcCcc-cCCccccCCCCCCEEecccccCCCCC-CccCCCCCCcceEeecccccccccCcccCCCC-------------
Q 042446 139 GQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGI-SPFLGNLTFLELVSLSYNSFEGNIPDSLGQLK------------- 203 (445)
Q Consensus 139 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~------------- 203 (445)
++|.+.+ ..|..++++++|++|++++|...+.+ +..+..+++|++|++++|.+.+..+..+++++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999875 35678899999999999999844444 46788999999999999999877777776544
Q ss_pred -----------CCCEEEccCCCCcccC--Ccc-CcCC-------------------------------------------
Q 042446 204 -----------ELKSLAIGVNNLSGKI--PPS-ICNL------------------------------------------- 226 (445)
Q Consensus 204 -----------~L~~L~l~~n~~~~~~--~~~-l~~l------------------------------------------- 226 (445)
+|++|++++|.+.+.. +.. ...+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 5555555555554310 000 0001
Q ss_pred --------------------------------------------CCCcEEEccCCcCCCCCCcccccCCCCccEEEccCC
Q 042446 227 --------------------------------------------SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQN 262 (445)
Q Consensus 227 --------------------------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (445)
++|+.+++++|.+. .+|..+...+++|++|++++|
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 12233333333332 333333223666666666666
Q ss_pred cCcccCc---ccCcCCCCCCEEECccCcCcccCc--ccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEc
Q 042446 263 FFTGSIP---VSLSNASKLEVIQIANNSFSGKFS--VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSF 337 (445)
Q Consensus 263 ~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 337 (445)
.+.+..+ ..+..+++|++|++++|.+++... ..+..+++|++|++++|++.. ++..+..+++|++|++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-------lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-------MPDSCQWPEKMRFLNL 417 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-------CCSCCCCCTTCCEEEC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-------CChhhcccccccEEEC
Confidence 6665442 235566677777777776654322 345666777777777776654 3334566677777777
Q ss_pred cCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccc
Q 042446 338 GRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417 (445)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 417 (445)
++|.++ .++..+ +++|++|++++|++++. ...+++|+.|++++|++. .+|. ...+++|+.|++++|++++
T Consensus 418 s~N~l~-~l~~~~---~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 418 SSTGIR-VVKTCI---PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TTSCCS-CCCTTS---CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred CCCCcc-cccchh---cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence 777765 333322 23778888888877642 247889999999999988 6776 4578999999999999998
Q ss_pred cccccccCCCCCCeEEccCCcceecCC
Q 042446 418 KIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 418 ~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
..+..+..+++|+.|++++|++.+..|
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCcccCEEEecCCCccCCCc
Confidence 888889999999999999999887543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=331.69 Aligned_cols=374 Identities=20% Similarity=0.169 Sum_probs=298.6
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEE
Q 042446 58 HRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLS 137 (445)
Q Consensus 58 ~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~ 137 (445)
.+++++++++++.+++..|..+.++++|++|++++|.+++..|..++++++|++|++++|.+.+..+..++++++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 37889999999999877788889999999999999999877788899999999999999999876667889999999999
Q ss_pred ccCCcCcc-cCCccccCCCCCCEEecccccCCCCCCccCCCCC---------------------------CcceEeeccc
Q 042446 138 LGQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLT---------------------------FLELVSLSYN 189 (445)
Q Consensus 138 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~---------------------------~L~~L~l~~~ 189 (445)
+++|.+.+ .+|..++++++|++|++++|.+.+..+..+..+. +|+.|++++|
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 99998875 4688889999999999988877654333222111 3334444333
Q ss_pred ccc-----------------------------------------------------------------------------
Q 042446 190 SFE----------------------------------------------------------------------------- 192 (445)
Q Consensus 190 ~~~----------------------------------------------------------------------------- 192 (445)
.+.
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEES
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecC
Confidence 221
Q ss_pred ---cccCcccCCCCCCCEEEccCCCCcccCCc--------------------cCcCCCCCcEEEccCCcCCCC--CCccc
Q 042446 193 ---GNIPDSLGQLKELKSLAIGVNNLSGKIPP--------------------SICNLSFLVNFSVSQNQIHGS--LPSCL 247 (445)
Q Consensus 193 ---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--------------------~l~~l~~L~~L~l~~~~~~~~--~~~~~ 247 (445)
..++ .+..+++|++|++++|.+. .+|. .+..+++|+.|++++|.+.+. ++..+
T Consensus 295 ~~~~~l~-~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 372 (606)
T 3vq2_A 295 VSIKYLE-DVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372 (606)
T ss_dssp CCCCCCC-CCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred ccchhhh-hccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhh
Confidence 0112 3455566777777777663 4442 233456666666666665532 24444
Q ss_pred ccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCc-ccccCCCCCCEEEccCCcCCCCCCCCCcccccc
Q 042446 248 GLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFS-VNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326 (445)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 326 (445)
.. +++|++|++++|.+.+ ++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+... .+..+
T Consensus 373 ~~-~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~ 444 (606)
T 3vq2_A 373 LG-TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID------FDGIF 444 (606)
T ss_dssp HC-CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC------CTTTT
T ss_pred cc-CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc------chhhh
Confidence 44 8999999999999885 56889999999999999999987766 6789999999999999998773 44568
Q ss_pred cCCCCCcEEEccCCcceec-CChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCC
Q 042446 327 ANCSKLRVLSFGRNQFRGV-LPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNL 405 (445)
Q Consensus 327 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 405 (445)
..+++|++|++++|.+.+. +|..+..++ +|++|++++|.+++..|..+..+++|+.|++++|++.+..|..+..+++|
T Consensus 445 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTT-NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred cCCCCCCEEECCCCcCCCcchHHhhccCC-CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 8999999999999999863 677777776 99999999999998888889999999999999999998889999999999
Q ss_pred CeEEccCCcccccccccccCCC-CCCeEEccCCcceecC
Q 042446 406 QGLDFGGNHFSGKIPSTLGNLS-SLSEIVLSNNNLSGVI 443 (445)
Q Consensus 406 ~~L~l~~n~i~~~~~~~l~~l~-~L~~l~l~~n~~~~~~ 443 (445)
+.|++++|+++ .+|..+..++ +|+++++++|++....
T Consensus 524 ~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 524 STLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 99999999999 7777788887 5999999999987643
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-40 Score=333.17 Aligned_cols=381 Identities=22% Similarity=0.246 Sum_probs=229.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
+++++++++++.+++..+..+.++++|++|++++|.+++..+.+++++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57899999999998777777899999999999999998888888999999999999999998655557889999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccC--CCCCCCEEEccCCCCc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLG--QLKELKSLAIGVNNLS 216 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~n~~~ 216 (445)
++|.+.+..|..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99998866667888999999999999988887788888888899999888887754444332 3466667777666665
Q ss_pred ccCCcc---------------------------------------------------CcCCC--CCcEEEccCCcCCCCC
Q 042446 217 GKIPPS---------------------------------------------------ICNLS--FLVNFSVSQNQIHGSL 243 (445)
Q Consensus 217 ~~~~~~---------------------------------------------------l~~l~--~L~~L~l~~~~~~~~~ 243 (445)
+..+.. +..++ +|+.|++++|.+.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 444433 33322 2555555555554333
Q ss_pred CcccccCCCCccEEEccCCcCcccCcccCcCCCCCC---------------------------------EEECccCcCcc
Q 042446 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLE---------------------------------VIQIANNSFSG 290 (445)
Q Consensus 244 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---------------------------------~L~l~~~~~~~ 290 (445)
+..+.. +++|++|++++|.+.+..+..+..+++|+ +|++++|.+.+
T Consensus 265 ~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 265 NDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp TTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred cccccC-cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 333332 56666666666655544433333333333 33333333333
Q ss_pred cCcccccCCCCCCEEEccCCcCCCCCCCC--C--------------------cccccccCCCCCcEEEccCCcceecCC-
Q 042446 291 KFSVNFGGMKNLSHLILQSSNLGSGESDE--M--------------------GFINSLANCSKLRVLSFGRNQFRGVLP- 347 (445)
Q Consensus 291 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~--------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~- 347 (445)
..+..+..+++|++|++++|.+....... + -.+..+..+++|+.|++++|.+.+.++
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 33333333344444443333211000000 0 001122333444444444444433332
Q ss_pred hhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcce--ecCChhhhCCCCCCeEEccCCcccccccccccC
Q 042446 348 HSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI--GTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGN 425 (445)
Q Consensus 348 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 425 (445)
..+..+. +|++|++++|.+++..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..+..+.+
T Consensus 424 ~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 424 QEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp GGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 2222222 4444444444443333334444444444444444443 234556666677777777777776555556667
Q ss_pred CCCCCeEEccCCccee
Q 042446 426 LSSLSEIVLSNNNLSG 441 (445)
Q Consensus 426 l~~L~~l~l~~n~~~~ 441 (445)
+++|++|++++|++++
T Consensus 503 l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 503 LEKLEILDLQHNNLAR 518 (680)
T ss_dssp CTTCCEEECCSSCCGG
T ss_pred ccccCEEeCCCCCccc
Confidence 7777777777777665
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-41 Score=342.21 Aligned_cols=345 Identities=19% Similarity=0.246 Sum_probs=249.1
Q ss_pred ccccccCCCCCCEEECCCCcccc-----------------cCCcccc--CCCCCCEEECCCCcCCCCCCccCcCCCCCCE
Q 042446 75 LSPHIGNLSFLREINLMDNTIQG-----------------EIPPEFG--RLFRLEALFLANNSLVGKIPANLSYCSRLTV 135 (445)
Q Consensus 75 ~~~~l~~l~~L~~L~L~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~ 135 (445)
+|..++++++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 66677788888888888888876 2777766 8888888888888877778888888888888
Q ss_pred EEccCCc-Ccc-cCCccccCC-------CCCCEEecccccCCCCCCc--cCCCCCCcceEeecccccccccCcccCCCCC
Q 042446 136 LSLGQNK-LVG-SIPFEFVFL-------YKLKGLSLHKNNLTGGISP--FLGNLTFLELVSLSYNSFEGNIPDSLGQLKE 204 (445)
Q Consensus 136 L~l~~~~-~~~-~~~~~~~~l-------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 204 (445)
|++++|+ +++ .+|..++++ ++|++|++++|.+. .+|. .+.++++|+.|++++|.+. .+| .++++++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 8888886 665 555544433 37777777777776 5666 6666777777777777666 555 6666666
Q ss_pred CCEEEccCCCCcccCCccCcCCCC-CcEEEccCCcCCCCCCccccc------------------------------CCCC
Q 042446 205 LKSLAIGVNNLSGKIPPSICNLSF-LVNFSVSQNQIHGSLPSCLGL------------------------------NFPN 253 (445)
Q Consensus 205 L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~------------------------------~~~~ 253 (445)
|++|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+.. ..++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 666666666666 56666666666 666666666555 44433221 1235
Q ss_pred ccEEEccCCcCcccCcccC-cCCCCCCEEECccCcCcccCccccc-------CCCCCCEEEccCCcCCCCCCCCCccccc
Q 042446 254 LKFFQIDQNFFTGSIPVSL-SNASKLEVIQIANNSFSGKFSVNFG-------GMKNLSHLILQSSNLGSGESDEMGFINS 325 (445)
Q Consensus 254 L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 325 (445)
|+.|++++|.+. .+|..+ ..+++|+.|++++|.+.......+. ++++|++|++++|++.. ++..
T Consensus 675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-------lp~~ 746 (876)
T 4ecn_A 675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-------LSDD 746 (876)
T ss_dssp EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-------CCGG
T ss_pred cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-------chHH
Confidence 666666666666 344333 4788999999999998844333333 23499999999999875 3445
Q ss_pred cc--CCCCCcEEEccCCcceecCChhhhhccccCcEEEccc------CcccccCCccccCccCCCeeeCccCcceecCCh
Q 042446 326 LA--NCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGF------NQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQ 397 (445)
Q Consensus 326 l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 397 (445)
+. .+++|+.|++++|.+++ +|..+..++ +|++|++++ |.+.+.+|..+..+++|+.|++++|.+ +.+|.
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCC-CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 65 89999999999999985 788888877 999999976 777788999999999999999999999 58888
Q ss_pred hhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCC
Q 042446 398 EMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437 (445)
Q Consensus 398 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n 437 (445)
.+. ++|+.|+|++|++....+..+.....+..+.+.+|
T Consensus 824 ~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n 861 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861 (876)
T ss_dssp CCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECC
T ss_pred hhc--CCCCEEECCCCCCCccChHHccccccchheeecCC
Confidence 765 69999999999988665555544333334444433
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=321.71 Aligned_cols=355 Identities=20% Similarity=0.209 Sum_probs=256.4
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCC-CCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGK-IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLS 161 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (445)
++|++|++++|.+++..+..++++++|++|++++|.+.+. .+..+.++++|++|++++|.+.+..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5677777777777766677777777777777777776533 355677777777777777777766677777777777777
Q ss_pred cccccCCCCCCcc--CCCCCCcceEeecccccccccCcc-cCCCCCCCEEEccCCCCcccCCccCcCC--CCCcEEEccC
Q 042446 162 LHKNNLTGGISPF--LGNLTFLELVSLSYNSFEGNIPDS-LGQLKELKSLAIGVNNLSGKIPPSICNL--SFLVNFSVSQ 236 (445)
Q Consensus 162 l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~ 236 (445)
+++|.+.+..+.. +..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+ ..|+.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 7777776533333 667777777777777777555554 6677777777777777776666666554 5677777777
Q ss_pred CcCCCCCCcccc-------cCCCCccEEEccCCcCcccCcccCcC---CCCCCEEECccCcCcccC----------cccc
Q 042446 237 NQIHGSLPSCLG-------LNFPNLKFFQIDQNFFTGSIPVSLSN---ASKLEVIQIANNSFSGKF----------SVNF 296 (445)
Q Consensus 237 ~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~----------~~~l 296 (445)
|.+.+..+..+. ..+++|++|++++|.+++..+..+.. .++|+.|++++|...+.. ...+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 776632222110 12467888888888777655554432 367778887777543221 1111
Q ss_pred c--CCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCcc
Q 042446 297 G--GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSG 374 (445)
Q Consensus 297 ~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 374 (445)
. ..++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..+..
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFAL------LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEE------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGG
T ss_pred ccccccCceEEEecCcccccc------chhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhH
Confidence 1 236888899988888763 344677888899999999888877777777776 8999999999888777778
Q ss_pred ccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 375 IGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 375 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8888899999999998887778888888999999999999886666677888999999999999888776
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=343.12 Aligned_cols=279 Identities=19% Similarity=0.186 Sum_probs=191.5
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccC-CccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEE
Q 042446 58 HRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEI-PPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVL 136 (445)
Q Consensus 58 ~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L 136 (445)
..+++.+++++|.+++..+..+..+++|++|++++|...+.+ +.++.++++|++|++++|.+.+..|..+.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 368889999999998877888999999999999998554444 7788999999999999999987788899999999999
Q ss_pred EccCCcCcccCCcc--ccCCCCCCEEecccccCCCCCC-ccCCCCCCcceEeecccccccccCcccCCC--CCCCEEEcc
Q 042446 137 SLGQNKLVGSIPFE--FVFLYKLKGLSLHKNNLTGGIS-PFLGNLTFLELVSLSYNSFEGNIPDSLGQL--KELKSLAIG 211 (445)
Q Consensus 137 ~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~ 211 (445)
++++|.+.+..|.. +.++++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999888655554 8889999999999998876544 568889999999999888876555555544 555555555
Q ss_pred CCCCcccCCccCcCC-----------------------------------------------------------------
Q 042446 212 VNNLSGKIPPSICNL----------------------------------------------------------------- 226 (445)
Q Consensus 212 ~n~~~~~~~~~l~~l----------------------------------------------------------------- 226 (445)
+|.+.+..+..+..+
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 555544444333333
Q ss_pred ---CCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCC
Q 042446 227 ---SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303 (445)
Q Consensus 227 ---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 303 (445)
++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred cccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 3344444444444422223232 255566666666655555555555666666666666665555555566666666
Q ss_pred EEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcce
Q 042446 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR 343 (445)
Q Consensus 304 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 343 (445)
+|++++|.+..... ..+..+++|+.|++++|.++
T Consensus 342 ~L~L~~N~i~~~~~------~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 342 YIDLQKNHIAIIQD------QTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EEECCSCCCCCCCS------SCSCSCCCCCEEEEETCCSC
T ss_pred EEECCCCCCCccCh------hhhcCCCCCCEEECCCCCCC
Confidence 66666665544322 24556677777777776654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=326.93 Aligned_cols=377 Identities=22% Similarity=0.191 Sum_probs=281.0
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
+++++++++++.+.+..|..++++++|++|++++|.++...+.+|+.+++|++|++++|.+.+..|..++++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 56777777777777666666777777777777777776444445777777777777777777555566777777777777
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCC--CCCCcceEeecc----------------------------
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLG--NLTFLELVSLSY---------------------------- 188 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~---------------------------- 188 (445)
++|.+.+..+..+.++++|++|++++|.+.+..+..+. .+++|++|++++
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 77777666666666677777777776665543332221 234444444444
Q ss_pred -----------------------cccccccCcccCCCC--CCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCC
Q 042446 189 -----------------------NSFEGNIPDSLGQLK--ELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243 (445)
Q Consensus 189 -----------------------~~~~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 243 (445)
|.+.+..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC
Confidence 444444444555553 4999999999998778888999999999999999876433
Q ss_pred Cccc--------------------------------ccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcC---
Q 042446 244 PSCL--------------------------------GLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF--- 288 (445)
Q Consensus 244 ~~~~--------------------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--- 288 (445)
+..+ ...+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 289 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 368 (680)
T 1ziw_A 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC
T ss_pred hhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh
Confidence 3221 22367888888888988887788899999999999987642
Q ss_pred -------------------------cccCcccccCCCCCCEEEccCCcCCCCCCCCCccc-ccccCCCCCcEEEccCCcc
Q 042446 289 -------------------------SGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFI-NSLANCSKLRVLSFGRNQF 342 (445)
Q Consensus 289 -------------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~ 342 (445)
.+..+..+..+++|++|++++|.+.. .++ ..+.++++|++|++++|++
T Consensus 369 ~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ------ELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE------ECCSGGGTTCTTCCEEECCSCSE
T ss_pred hcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc------ccCcccccCcccccEEecCCCCc
Confidence 22334456677888888888887754 122 4678899999999999999
Q ss_pred eecCChhhhhccccCcEEEcccCccc--ccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccccc
Q 042446 343 RGVLPHSITNLSSQLQVLFLGFNQLY--GSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP 420 (445)
Q Consensus 343 ~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 420 (445)
.+..+..+...+ +|++|++++|.++ +..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+
T Consensus 443 ~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 521 (680)
T 1ziw_A 443 LQLTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521 (680)
T ss_dssp EECCTTTTTTCT-TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGS
T ss_pred ceeChhhhhcCc-ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccch
Confidence 877777777776 9999999999876 4678889999999999999999997777789999999999999999985422
Q ss_pred --------ccccCCCCCCeEEccCCcceec
Q 042446 421 --------STLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 421 --------~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
..+.++++|++|++++|++++.
T Consensus 522 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 522 HANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp TTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred hhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 2378899999999999999853
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=320.13 Aligned_cols=366 Identities=23% Similarity=0.236 Sum_probs=276.6
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.++++++.+.+..+..+..+++|++|++++|.+++..|..++++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57888888888888766677888888888888888888777788888888888888888888 45555 7888888888
Q ss_pred cCCcCcc-cCCccccCCCCCCEEecccccCCCCCCccCCCCCCc--ceEeeccccc--ccccCcccCCCC----------
Q 042446 139 GQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL--ELVSLSYNSF--EGNIPDSLGQLK---------- 203 (445)
Q Consensus 139 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~l~~l~---------- 203 (445)
++|.+.+ ..|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 8888875 367788888888888888888764 334556666 7777777776 434444433321
Q ss_pred -------------------------------------------------------------------------CCCEEEc
Q 042446 204 -------------------------------------------------------------------------ELKSLAI 210 (445)
Q Consensus 204 -------------------------------------------------------------------------~L~~L~l 210 (445)
+|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 4445555
Q ss_pred cCCCCcccCCccC-----cCCCCCcEEEccCCcCCCCCC-ccccc--CCCCccEEEccCCcCcccCcccCcCCCCCCEEE
Q 042446 211 GVNNLSGKIPPSI-----CNLSFLVNFSVSQNQIHGSLP-SCLGL--NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQ 282 (445)
Q Consensus 211 ~~n~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~-~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 282 (445)
++|.+.+.+|..+ ..++.|+.++++.|.+ .+| ..+.. ..++|+.|++++|.+.+.. ....+++|++|+
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ 330 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD 330 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence 5555554555555 5555555555555554 333 11111 0145777777777765321 126889999999
Q ss_pred CccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEc
Q 042446 283 IANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL 362 (445)
Q Consensus 283 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 362 (445)
+++|.+++..+..+..+++|++|++++|++.... .++..+..+++|++|++++|.+.+.+|.......++|++|++
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELS----KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH----HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccc----cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 9999999888889999999999999999987532 244568899999999999999986566653333349999999
Q ss_pred ccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccc-cccCCCCCCeEEccCCccee
Q 042446 363 GFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPS-TLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~l~l~~n~~~~ 441 (445)
++|.+++..|..+. ++|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|. .+..+++|++|++++|++.+
T Consensus 407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 407 SSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 99999877666554 79999999999998 88888889999999999999999 5665 48999999999999999876
Q ss_pred c
Q 042446 442 V 442 (445)
Q Consensus 442 ~ 442 (445)
.
T Consensus 483 ~ 483 (520)
T 2z7x_B 483 S 483 (520)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=333.88 Aligned_cols=384 Identities=20% Similarity=0.205 Sum_probs=272.5
Q ss_pred CcEEEEEcCCCCCcccc-cccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcc--CcCCCCCCE
Q 042446 59 RRVIALDLMSKALSGSL-SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPAN--LSYCSRLTV 135 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~--l~~l~~L~~ 135 (445)
.+++.++++++...+.+ +..+.++++|++|+|++|.+.+..|..++++++|++|++++|.+.+..|.. +.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 67888888888655555 667888888888888888888777888888888888888888887655544 788888888
Q ss_pred EEccCCcCcccCC-ccccCCCCCCEEecccccCCCCCCccCCCC--CC------------------------------cc
Q 042446 136 LSLGQNKLVGSIP-FEFVFLYKLKGLSLHKNNLTGGISPFLGNL--TF------------------------------LE 182 (445)
Q Consensus 136 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~--~~------------------------------L~ 182 (445)
|++++|.+.+..+ ..|+++++|++|++++|.+.+..+..+..+ ++ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 8888888875543 467888888888888887765444333222 22 66
Q ss_pred eEeecccccccccCcccC------------------------------------C--CCCCCEEEccCCCCcccCCccCc
Q 042446 183 LVSLSYNSFEGNIPDSLG------------------------------------Q--LKELKSLAIGVNNLSGKIPPSIC 224 (445)
Q Consensus 183 ~L~l~~~~~~~~~~~~l~------------------------------------~--l~~L~~L~l~~n~~~~~~~~~l~ 224 (445)
.|++++|.+.+..+..+. . .++|++|++++|.+.+..+..+.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 666666644332222111 1 25678888888888777777888
Q ss_pred CCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCE
Q 042446 225 NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSH 304 (445)
Q Consensus 225 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 304 (445)
.+++|+.|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTTT-CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred cCCCCCEEECCCCcCCCCChHHhcC-CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 8888888888888887555555544 888888888888888777778888888888888888887777777888888888
Q ss_pred EEccCCcCCCCCCCC----------------------------------CcccccccCCCCCcEEEccCCcceecCChhh
Q 042446 305 LILQSSNLGSGESDE----------------------------------MGFINSLANCSKLRVLSFGRNQFRGVLPHSI 350 (445)
Q Consensus 305 L~l~~~~~~~~~~~~----------------------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 350 (445)
|++++|.+....... .+....+..+++|+.|++++|.+++..+...
T Consensus 367 L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp EEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred EECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence 888888776532100 0001112356777777777777664332222
Q ss_pred hhccccCcEEEcccCcccc-----cCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccC
Q 042446 351 TNLSSQLQVLFLGFNQLYG-----SIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGN 425 (445)
Q Consensus 351 ~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 425 (445)
....++|++|++++|.++. ..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|++++..+..+.
T Consensus 447 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~- 525 (844)
T 3j0a_A 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP- 525 (844)
T ss_dssp SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-
T ss_pred cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-
Confidence 2222377777777777652 2334566778888888888888877777788888888888888888865555554
Q ss_pred CCCCCeEEccCCcceecCCC
Q 042446 426 LSSLSEIVLSNNNLSGVIPS 445 (445)
Q Consensus 426 l~~L~~l~l~~n~~~~~~p~ 445 (445)
++|+.|++++|++++.+|.
T Consensus 526 -~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 526 -ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp -SCCCEEEEEEECCCCCCSC
T ss_pred -ccccEEECCCCcCCCCChh
Confidence 7888888888888887663
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=316.88 Aligned_cols=368 Identities=19% Similarity=0.195 Sum_probs=274.5
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKL 143 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~ 143 (445)
++-++..++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+.+..+..|.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 444555554 3554443 5799999999999988888999999999999999999987788899999999999999999
Q ss_pred cccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccccccc-ccCcccCCCCCCCEEEccCCCCcccCCcc
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEG-NIPDSLGQLKELKSLAIGVNNLSGKIPPS 222 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 222 (445)
.+..|..|.++++|++|++++|.+....+..+.++++|++|++++|.+.. .+|..++++++|++|++++|.+.+..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 97777899999999999999999987666578999999999999999886 46889999999999999999887555554
Q ss_pred CcCCCCC----cEEEccCCcCCCCCC------------------------------------------------------
Q 042446 223 ICNLSFL----VNFSVSQNQIHGSLP------------------------------------------------------ 244 (445)
Q Consensus 223 l~~l~~L----~~L~l~~~~~~~~~~------------------------------------------------------ 244 (445)
+..+++| ..+++++|.+.+..+
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 248 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch
Confidence 5444444 445554443321111
Q ss_pred ---------------------------cccccCCCCccEEEccCCcCcccCcccCc------------------------
Q 042446 245 ---------------------------SCLGLNFPNLKFFQIDQNFFTGSIPVSLS------------------------ 273 (445)
Q Consensus 245 ---------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~------------------------ 273 (445)
..+. .+++|++|++++|.+. .+|..+.
T Consensus 249 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~ 326 (570)
T 2z63_A 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326 (570)
T ss_dssp TTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSS
T ss_pred hhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccc
Confidence 1111 1344555555554443 2333332
Q ss_pred ------------------CCCCCCEEECccCcCcccC--cccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCc
Q 042446 274 ------------------NASKLEVIQIANNSFSGKF--SVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLR 333 (445)
Q Consensus 274 ------------------~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 333 (445)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+.. ++..+..+++|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~~~l~~L~ 399 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-------MSSNFLGLEQLE 399 (570)
T ss_dssp CCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-------EEEEEETCTTCC
T ss_pred cCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-------ccccccccCCCC
Confidence 3344555555555444322 3344455555555555555433 233467788888
Q ss_pred EEEccCCcceecCC-hhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcce-ecCChhhhCCCCCCeEEcc
Q 042446 334 VLSFGRNQFRGVLP-HSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI-GTIPQEMGKLLNLQGLDFG 411 (445)
Q Consensus 334 ~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~ 411 (445)
+|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|+++
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred EEEccCCccccccchhhhhcCC-CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 88888888876555 3344555 8999999999988778888888999999999999887 4688889999999999999
Q ss_pred CCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 412 GNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 412 ~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
+|++++..|..+..+++|++|++++|++++.+|
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 999998888899999999999999999988765
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=313.89 Aligned_cols=367 Identities=24% Similarity=0.214 Sum_probs=238.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.+++++|.+++..+..+..+++|++|++++|.+++..++++.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 34555555555555444455555555666666665555555555555556666666655555 34433 4555666666
Q ss_pred cCCcCccc-CCccccCCCCCCEEecccccCCCCCCccCCCCCCc--ceEeeccccc--ccccCcccCC------------
Q 042446 139 GQNKLVGS-IPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL--ELVSLSYNSF--EGNIPDSLGQ------------ 201 (445)
Q Consensus 139 ~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~l~~------------ 201 (445)
++|.+.+. .|..|+++++|++|++++|.+.... +..+++| ++|++++|.+ .+..+..+..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 65555531 2345555556666666555554322 2223333 5555555554 3222222222
Q ss_pred --------------CCCCCEEEccCCCC----------------------------cc----cCCccCcCCCCCcEEEcc
Q 042446 202 --------------LKELKSLAIGVNNL----------------------------SG----KIPPSICNLSFLVNFSVS 235 (445)
Q Consensus 202 --------------l~~L~~L~l~~n~~----------------------------~~----~~~~~l~~l~~L~~L~l~ 235 (445)
+++|+.+++++|.. .+ ..+.. ...++|++|+++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~ 284 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIY 284 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEe
Confidence 12222222222210 00 00000 011256667777
Q ss_pred CCcCCCCCCccccc----C--------------------------CCCccEEEccCCcCcccCcccCcCCCCCCEEECcc
Q 042446 236 QNQIHGSLPSCLGL----N--------------------------FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIAN 285 (445)
Q Consensus 236 ~~~~~~~~~~~~~~----~--------------------------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (445)
+|.+.+.+|..+.. . .++|++|++++|.+.... ....+++|++|++++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCC
Confidence 77666666654411 0 145777777777765321 126789999999999
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccC
Q 042446 286 NSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFN 365 (445)
Q Consensus 286 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 365 (445)
|.+++..+..+..+++|++|++++|++.... .++..+..+++|++|++++|.+++.+|.......++|++|++++|
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFF----KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTT----HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcc----cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 9999888889999999999999999987643 344567899999999999999987566654433349999999999
Q ss_pred cccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccccccc-ccCCCCCCeEEccCCcceec
Q 042446 366 QLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPST-LGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 366 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~l~l~~n~~~~~ 442 (445)
.+++..|..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.+.
T Consensus 439 ~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 439 MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 99876665544 79999999999988 78887779999999999999999 56655 89999999999999998864
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=296.84 Aligned_cols=292 Identities=24% Similarity=0.442 Sum_probs=235.6
Q ss_pred cChhhHHHHHHHHHhccCCCCCCCCCCCCCCCCcc--eeeeEeCCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCE
Q 042446 14 FEEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCE--WDGVTCGRRH--RRVIALDLMSKALSG--SLSPHIGNLSFLRE 87 (445)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~~~~c~--~~~~~~~~~~--~~v~~l~l~~~~~~~--~~~~~l~~l~~L~~ 87 (445)
+.+.+.+|+.+|++++. +|. .+..|..+.++|. |.||.|.... .+|+.++++++.+.+ .+|..+..+++|++
T Consensus 3 c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp SCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 45678899999999985 666 7889988889998 9999998754 789999999999998 88999999999999
Q ss_pred EECCC-CcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccccc
Q 042446 88 INLMD-NTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNN 166 (445)
Q Consensus 88 L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (445)
|++++ +.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 88888899999999999999999999988889999999999999999999988888889999999999999999
Q ss_pred CCCCCCccCCCCC-CcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCc
Q 042446 167 LTGGISPFLGNLT-FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS 245 (445)
Q Consensus 167 ~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 245 (445)
+.+.+|..+..++ +|++|++++|.+.+..|..+..+. |++|++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 8878888888887 889999998888888888888776 88888888888877777788888888888888877644443
Q ss_pred ccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCc
Q 042446 246 CLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSN 311 (445)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 311 (445)
+. .+++|++|++++|.+++.+|..+..+++|++|++++|.+++..+.. ..+++|+.+++++|.
T Consensus 240 -~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 -VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp -CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred -cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 22 2566666666666666666666666666666666666665544433 444555555555543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=311.67 Aligned_cols=360 Identities=19% Similarity=0.231 Sum_probs=278.1
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCC
Q 042446 62 IALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQN 141 (445)
Q Consensus 62 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~ 141 (445)
++++++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 36899999998 5777665 89999999999999777789999999999999999999877899999999999999999
Q ss_pred cCcccCCccccCCCCCCEEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccCCCCCC--CEEEccCCCC--c
Q 042446 142 KLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKEL--KSLAIGVNNL--S 216 (445)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~n~~--~ 216 (445)
.++ .+|.. .+++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56655 89999999999999987 467899999999999999999885 456667777 9999999988 5
Q ss_pred ccCCccCcCC--------------------------CCCcEEEccCCc-------CCCCCCccccc--------------
Q 042446 217 GKIPPSICNL--------------------------SFLVNFSVSQNQ-------IHGSLPSCLGL-------------- 249 (445)
Q Consensus 217 ~~~~~~l~~l--------------------------~~L~~L~l~~~~-------~~~~~~~~~~~-------------- 249 (445)
+..|..+..+ ++|+.+++++|. +.+.++ .+..
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 5566555542 333333333332 000000 0000
Q ss_pred ------------CCCCccEEEccCCcCcccCcccC-----cCCCC--------------------------CCEEECccC
Q 042446 250 ------------NFPNLKFFQIDQNFFTGSIPVSL-----SNASK--------------------------LEVIQIANN 286 (445)
Q Consensus 250 ------------~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~--------------------------L~~L~l~~~ 286 (445)
..++|++|++++|.+.+.+|..+ .++++ |+.|++++|
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence 02356666666666655555555 44544 455555555
Q ss_pred cCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCccee--cCChhhhhccccCcEEEccc
Q 042446 287 SFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG--VLPHSITNLSSQLQVLFLGF 364 (445)
Q Consensus 287 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~ 364 (445)
.+.... .+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+++ .+|..+..++ +|++|++++
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~ 383 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTD------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQ 383 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCT------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCS
T ss_pred cccccc--chhhCCcccEEEeECCccCh------hhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCC
Confidence 443221 12678999999999999877 345567889999999999999985 4556667776 999999999
Q ss_pred CcccccCCcc-ccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecC
Q 042446 365 NQLYGSIPSG-IGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVI 443 (445)
Q Consensus 365 ~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~ 443 (445)
|.+++.+|.. +..+++|+.|++++|.+.+..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l 459 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-V 459 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-c
Confidence 9998646654 77889999999999999877776664 79999999999999 888877899999999999999986 4
Q ss_pred C
Q 042446 444 P 444 (445)
Q Consensus 444 p 444 (445)
|
T Consensus 460 ~ 460 (520)
T 2z7x_B 460 P 460 (520)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=311.08 Aligned_cols=376 Identities=18% Similarity=0.173 Sum_probs=242.2
Q ss_pred CcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCc
Q 042446 46 FCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPA 125 (445)
Q Consensus 46 ~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~ 125 (445)
.|.|.++ | +.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..|.
T Consensus 3 ~C~~~~~-c----------~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-C----------DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-E----------ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-E----------ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 3777665 5 44455665 4565553 7899999999999988888999999999999999999988888
Q ss_pred cCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCC-CCCccCCCCCCcceEeecccccccccC-cccCCCC
Q 042446 126 NLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIP-DSLGQLK 203 (445)
Q Consensus 126 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~ 203 (445)
.+.++++|++|++++|.+.+..+..++++++|++|++++|.+.+ ..+..+.++++|++|++++|...+.++ ..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999997667679999999999999999886 356788999999999999998443444 6899999
Q ss_pred CCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccC--c-ccC--------
Q 042446 204 ELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSI--P-VSL-------- 272 (445)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~-~~l-------- 272 (445)
+|++|++++|.+.+..|..+..+++|++|+++.|.+. .++..+...+++|++|++++|.+.+.. + ...
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 9999999999999888888877666666666555543 333333223444444444444443210 0 000
Q ss_pred --------------------cC----------------------------------------------------------
Q 042446 273 --------------------SN---------------------------------------------------------- 274 (445)
Q Consensus 273 --------------------~~---------------------------------------------------------- 274 (445)
..
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 00
Q ss_pred -CCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCC--hhhh
Q 042446 275 -ASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLP--HSIT 351 (445)
Q Consensus 275 -~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~ 351 (445)
.++|++|++++|.+.......+..+++|++|++++|.+.+... .....+..+++|++|++++|.+++..+ ..+.
T Consensus 308 ~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 384 (549)
T 2z81_A 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL---KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384 (549)
T ss_dssp HSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHH---HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred hcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccc---cchhhhhccccCcEEEccCCcccccccchhhhh
Confidence 0122233333332221111111235555555555555433100 001123444555555555555542211 1223
Q ss_pred hccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChh------------------hhCCCCCCeEEccCC
Q 042446 352 NLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQE------------------MGKLLNLQGLDFGGN 413 (445)
Q Consensus 352 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~------------------~~~~~~L~~L~l~~n 413 (445)
.++ +|++|++++|+++ .+|..+..+++|+.|++++|.+. .++.. ...+++|+.|++++|
T Consensus 385 ~l~-~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 385 TLK-NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN 461 (549)
T ss_dssp GCT-TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred cCC-CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCC
Confidence 333 5555555555554 34444444445555555554443 11111 136788888888888
Q ss_pred cccccccccccCCCCCCeEEccCCcceecCC
Q 042446 414 HFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 414 ~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
+++ .+|. ...+++|++|++++|++++.+|
T Consensus 462 ~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 462 KLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp CCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred ccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 888 6665 4568899999999999988765
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=297.44 Aligned_cols=354 Identities=17% Similarity=0.176 Sum_probs=295.4
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCccc-CCccccCCCCCCEEeccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGS-IPFEFVFLYKLKGLSLHK 164 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~ 164 (445)
+.++.+++.++ .+|. -.++|++|++++|.+.+..|..+.++++|++|++++|.+.+. .+..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 35666666665 5554 237899999999999988899999999999999999988644 466799999999999999
Q ss_pred ccCCCCCCccCCCCCCcceEeecccccccccCcc--cCCCCCCCEEEccCCCCcccCCcc-CcCCCCCcEEEccCCcCCC
Q 042446 165 NNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDS--LGQLKELKSLAIGVNNLSGKIPPS-ICNLSFLVNFSVSQNQIHG 241 (445)
Q Consensus 165 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~~~~~~ 241 (445)
|.+.+..+..+.++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..|.. +..+++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9999888899999999999999999998644444 899999999999999999776765 7899999999999999987
Q ss_pred CCCccccc-CCCCccEEEccCCcCcccCccc--------CcCCCCCCEEECccCcCcccCcccccC---CCCCCEEEccC
Q 042446 242 SLPSCLGL-NFPNLKFFQIDQNFFTGSIPVS--------LSNASKLEVIQIANNSFSGKFSVNFGG---MKNLSHLILQS 309 (445)
Q Consensus 242 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~ 309 (445)
..+..+.. ..++|+.+++++|.+.+..+.. +..+++|++|++++|.+.+..+..+.. .++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 66666543 1378999999999988644433 346789999999999998776666544 38999999999
Q ss_pred CcCCCCCCCCCccc----ccc--cCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCe
Q 042446 310 SNLGSGESDEMGFI----NSL--ANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYL 383 (445)
Q Consensus 310 ~~~~~~~~~~~~~~----~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 383 (445)
+...........+. ..+ ..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCE
Confidence 87654322111110 111 1347899999999999988888888877 9999999999999888889999999999
Q ss_pred eeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 384 LAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 384 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
|++++|.+.+..+..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 9999999998788999999999999999999998889999999999999999999998544
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-36 Score=289.50 Aligned_cols=344 Identities=27% Similarity=0.394 Sum_probs=290.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
.+++.++++++.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 578899999998874 44 48889999999999999984 444 8999999999999999985444 899999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+.+. +. +..+++|++|++++|.+.+. + .+..+++|++|++. +.+... ..+.++++|++|++++|.+.+
T Consensus 120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~- 191 (466)
T 1o6v_A 120 FNNQITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSD- 191 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCC-
T ss_pred CCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCC-
Confidence 99999844 43 89999999999999998853 3 48899999999996 444422 348899999999999999873
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
+ ..+..+++|++|++++|.+.+..+ +.. +++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..
T Consensus 192 ~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 192 I-SVLAKLTNLESLIATNNQISDITP--LGI-LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C-hhhccCCCCCEEEecCCccccccc--ccc-cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 3 457889999999999999885544 333 89999999999998853 467889999999999999976554 889
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 378 (445)
+++|++|++++|.+.... .+..+++|+.|++++|++.+..+ +..++ +|++|++++|++++..| +..+
T Consensus 264 l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 264 LTKLTELKLGANQISNIS--------PLAGLTALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp CTTCSEEECCSSCCCCCG--------GGTTCTTCSEEECCSSCCSCCGG--GGGCT-TCSEEECCSSCCSCCGG--GGGC
T ss_pred CCCCCEEECCCCccCccc--------cccCCCccCeEEcCCCcccCchh--hcCCC-CCCEEECcCCcCCCchh--hccC
Confidence 999999999999987632 27789999999999999985433 55555 99999999999986544 7789
Q ss_pred cCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
++|+.|++++|.+.+. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999999999998853 468899999999999999997776 8899999999999999998
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=301.87 Aligned_cols=142 Identities=24% Similarity=0.192 Sum_probs=125.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..++++++++|.+++..+..+.++++|++|+|++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999999777778999999999999999999777888999999999999999999766678999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccC
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLG 200 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 200 (445)
++|.+++..+..|+++++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 9999986666779999999999999999875 4677888999999999999988765554443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=298.47 Aligned_cols=358 Identities=18% Similarity=0.225 Sum_probs=281.7
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCC
Q 042446 62 IALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQN 141 (445)
Q Consensus 62 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~ 141 (445)
+.++++++.+++ +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 789999999985 776654 89999999999999777789999999999999999999888999999999999999999
Q ss_pred cCcccCCccccCCCCCCEEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccCCCCCC--CEEEccCCCC--c
Q 042446 142 KLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKEL--KSLAIGVNNL--S 216 (445)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~n~~--~ 216 (445)
.++ .+|.. .+++|++|++++|.+.+ ..|..+.++++|++|++++|.+... .+..+++| ++|++++|.+ .
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 998 56655 89999999999999986 3467899999999999999998853 34455555 9999999988 6
Q ss_pred ccCCccCcCC--------------------------CCCcEEEccCCcC----------------------------CC-
Q 042446 217 GKIPPSICNL--------------------------SFLVNFSVSQNQI----------------------------HG- 241 (445)
Q Consensus 217 ~~~~~~l~~l--------------------------~~L~~L~l~~~~~----------------------------~~- 241 (445)
+..+..+..+ ++|+.+++++|.. .+
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 5666555543 3455555554420 00
Q ss_pred ---CCCcccccCCCCccEEEccCCcCcccCcccC-----cCC--------------------------CCCCEEECccCc
Q 042446 242 ---SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSL-----SNA--------------------------SKLEVIQIANNS 287 (445)
Q Consensus 242 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~~~ 287 (445)
.++... ..++|++|++++|.+.+.+|..+ .++ .+|++|++++|.
T Consensus 265 ~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 265 CSVKLFQFF--WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHhh--hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence 000001 13478899999998887777665 333 346666666666
Q ss_pred CcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCccee--cCChhhhhccccCcEEEcccC
Q 042446 288 FSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG--VLPHSITNLSSQLQVLFLGFN 365 (445)
Q Consensus 288 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 365 (445)
+.... ....+++|++|++++|.+.+ ..+..+..+++|++|++++|++++ .+|..+..++ +|++|++++|
T Consensus 343 ~~~~~--~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N 413 (562)
T 3a79_B 343 FIHMV--CPPSPSSFTFLNFTQNVFTD------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLN 413 (562)
T ss_dssp CCCCC--CCSSCCCCCEEECCSSCCCT------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTS
T ss_pred ccccc--CccCCCCceEEECCCCcccc------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCC
Confidence 54221 12678999999999999877 345577899999999999999985 2234456666 9999999999
Q ss_pred cccccCCc-cccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceec
Q 042446 366 QLYGSIPS-GIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 366 ~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
.+++.+|. .+..+++|+.|++++|.+.+..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++.
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV 488 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCC
Confidence 99874555 477889999999999999876666553 79999999999999 7787777999999999999999963
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=280.39 Aligned_cols=351 Identities=16% Similarity=0.167 Sum_probs=249.3
Q ss_pred CCCCCCCCCCcc-eeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECC
Q 042446 37 LNSWNDSRHFCE-WDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLA 115 (445)
Q Consensus 37 ~~~w~~~~~~c~-~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 115 (445)
++.|....+||. |.+..|.....+ ++...... .....-..++++++|+++++.++...+..+..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~---i~~~~~~~--~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVH---IDMQTQDV--YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEESCE---ECSSCCCC--EESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceeeee---eecccccc--cccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 457877766665 444444221111 12212111 111222346889999999999985555567899999999999
Q ss_pred CCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccccccccc
Q 042446 116 NNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195 (445)
Q Consensus 116 ~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 195 (445)
+|.+.+..+..+..+++|++|++++|.+.+..|..++++++|++|++++|.+....+..+.++++|++|++++|.+.+..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99999777778999999999999999999777778899999999999999998555555688999999999999998777
Q ss_pred CcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCC
Q 042446 196 PDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNA 275 (445)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 275 (445)
+..+.++++|++|++++|.+++. .+..+++|+.+++++|.+.+ + . ..+.|++|++++|.+... +. ...
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-~----~-~~~~L~~L~l~~n~l~~~-~~--~~~ 225 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-L----A-IPIAVEELDASHNSINVV-RG--PVN 225 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-E----E-CCSSCSEEECCSSCCCEE-EC--CCC
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-c----C-CCCcceEEECCCCeeeec-cc--ccc
Confidence 77888999999999999988743 34567888888888887652 1 1 256788888888887743 22 224
Q ss_pred CCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccc
Q 042446 276 SKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS 355 (445)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 355 (445)
++|++|++++|.+++. ..+..+++|++|++++|.+... .+..+..+++|++|++++|++++ ++.....++
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~- 295 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP- 295 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE------ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT-
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc------ChhHccccccCCEEECCCCcCcc-cCcccCCCC-
Confidence 6788888888877643 4667778888888888777652 34456777778888888777763 343334444
Q ss_pred cCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccc
Q 042446 356 QLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 356 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
+|++|++++|.++ .+|..+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|++...
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccch
Confidence 7777777777776 456666677777777777777763 33 55667777777777777643
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=288.56 Aligned_cols=321 Identities=20% Similarity=0.177 Sum_probs=265.0
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
+.+++++..++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 57888888887 666644 368999999999999877889999999999999999999778889999999999999999
Q ss_pred cCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCc
Q 042446 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS 245 (445)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 245 (445)
.+....+..+.++++|++|++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+. .++.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccCh
Confidence 998766667889999999999999999888888999999999999999998778888999999999999999887 4444
Q ss_pred ccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccccc
Q 042446 246 CLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINS 325 (445)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 325 (445)
.....+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+.......+|++|++++|.+.... ...
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~ 243 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP------YLA 243 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC------HHH
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC------HHH
Confidence 43344889999999999988777778888999999999988766565555555668888888888876532 235
Q ss_pred ccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCC
Q 042446 326 LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNL 405 (445)
Q Consensus 326 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 405 (445)
+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCT-TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred hcCccccCeeECCCCcCCccChhhccccc-cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence 67788888888888888766665566665 78888888888887777788888888888888888876555667778888
Q ss_pred CeEEccCCcccc
Q 042446 406 QGLDFGGNHFSG 417 (445)
Q Consensus 406 ~~L~l~~n~i~~ 417 (445)
+.|++++|++..
T Consensus 323 ~~L~l~~N~l~c 334 (477)
T 2id5_A 323 ETLILDSNPLAC 334 (477)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEccCCCccC
Confidence 888888888763
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=291.77 Aligned_cols=354 Identities=16% Similarity=0.178 Sum_probs=250.6
Q ss_pred CCCCCCCCCCCCCCCCcc----eeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCC
Q 042446 31 HDPQRILNSWNDSRHFCE----WDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRL 106 (445)
Q Consensus 31 ~~~~~~~~~w~~~~~~c~----~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 106 (445)
++.+...+.|..+..||. |..+.|.. .++....... ....-..+.+++.++++++.+....+..+..+
T Consensus 3 g~~~~~l~~~~~~~~C~~~~~~~~c~~~~~------~i~~~~~~~~--~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l 74 (597)
T 3oja_B 3 GQQRYNVKPRQPEYKCIDSNLQYDCVFYDV------HIDMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74 (597)
T ss_dssp --------CCCSEECCCCC--CCSEEECSC------EECSSCCCCE--ESCSSGGGCCCSEEEESSCEESEECTHHHHHC
T ss_pred CcccccccCCCCCCcCcccCcCceeEecCc------eecccccccc--cCcccccCCCceEEEeeCCCCCCcCHHHHccC
Confidence 455666788988877774 54444421 1222222111 11112246789999999999986666668889
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEee
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSL 186 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 186 (445)
++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..|+.+++|++|++++|.+....+..+..+++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 99999999999999877889999999999999999999777778899999999999999998666666788999999999
Q ss_pred cccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc
Q 042446 187 SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG 266 (445)
Q Consensus 187 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (445)
++|.+.+..+..+.++++|++|++++|.+.+. .+..+++|+.+++++|.+.+ + . .+++|+.|++++|.+..
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-l----~-~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-L----A-IPIAVEELDASHNSINV 225 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-E----E-CCTTCSEEECCSSCCCE
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-c----c-CCchhheeeccCCcccc
Confidence 99999877777889999999999999988743 24567888888888886652 1 1 25678888888887764
Q ss_pred cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC
Q 042446 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346 (445)
Q Consensus 267 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 346 (445)
..+ .+ .++|+.|++++|.+++. ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+++ +
T Consensus 226 ~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~-l 293 (597)
T 3oja_B 226 VRG-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK------IMYHPFVKMQRLERLYISNNRLVA-L 293 (597)
T ss_dssp EEC-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE------EESGGGTTCSSCCEEECTTSCCCE-E
T ss_pred ccc-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCC------CCHHHhcCccCCCEEECCCCCCCC-C
Confidence 322 22 25788888888877643 556777777777777777765 234456677777777777777764 3
Q ss_pred ChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccc
Q 042446 347 PHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 347 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
|..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|++.+.
T Consensus 294 ~~~~~~l~-~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 294 NLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECSSSCCT-TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred CcccccCC-CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCCh
Confidence 44444444 7777777777776 466666667777777777777663 22 45566777777777776543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=284.76 Aligned_cols=347 Identities=18% Similarity=0.144 Sum_probs=289.0
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKL 143 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~ 143 (445)
++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+
T Consensus 16 v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 16 VLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp EECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 445555554 4555443 6899999999999988888999999999999999999988899999999999999999999
Q ss_pred cccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccC
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI 223 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 223 (445)
....+..|.++++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 86666678999999999999999998888889999999999999999998888899999999999999999986656678
Q ss_pred cCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCC
Q 042446 224 CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303 (445)
Q Consensus 224 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 303 (445)
..+++|+.|++++|.+.+..+..+. .+++|++|++++|...+.++.......+|++|++++|.+++.....+..+++|+
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred cccCCCcEEeCCCCcCcEeChhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 8999999999999998854444444 499999999999988777777777777999999999999877667889999999
Q ss_pred EEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCe
Q 042446 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYL 383 (445)
Q Consensus 304 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 383 (445)
+|++++|.+.... ...+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|+.
T Consensus 252 ~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 252 FLNLSYNPISTIE------GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN-YLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp EEECCSSCCCEEC------TTSCTTCTTCCEEECCSSCCSEECTTTBTTCT-TCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred eeECCCCcCCccC------hhhccccccCCEEECCCCccceECHHHhcCcc-cCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 9999999987643 23578899999999999999988788888777 9999999999999766667889999999
Q ss_pred eeCccCcceecCC-hhhhCCCCCCeEEccCCcccccccccc
Q 042446 384 LAMEQNQFIGTIP-QEMGKLLNLQGLDFGGNHFSGKIPSTL 423 (445)
Q Consensus 384 L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~l 423 (445)
|++++|++...-. .++. .....+.+.++...-..|..+
T Consensus 325 L~l~~N~l~c~c~~~~~~--~~~~~~~~~~~~~~C~~p~~~ 363 (477)
T 2id5_A 325 LILDSNPLACDCRLLWVF--RRRWRLNFNRQQPTCATPEFV 363 (477)
T ss_dssp EECCSSCEECSGGGHHHH--TTTTSSCCTTCCCBEEESGGG
T ss_pred EEccCCCccCccchHhHH--hhhhccccCccCceeCCchHH
Confidence 9999999874322 2221 223344555554443334433
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=276.24 Aligned_cols=328 Identities=27% Similarity=0.394 Sum_probs=275.0
Q ss_pred cCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 042446 80 GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKG 159 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (445)
..+++++.|++.++.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34678999999999987 455 478899999999999999854 44 8999999999999999984443 899999999
Q ss_pred EecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcC
Q 042446 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQI 239 (445)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 239 (445)
|++++|.+.+.. . +..+++|++|++++|.+.. + ..+.++++|++|+++ +.+. .. ..+..+++|+.|++++|.+
T Consensus 117 L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~-~~~~-~~-~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDID-P-LKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLSFG-NQVT-DL-KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECC-C-GGGTTCTTCSEEEEE-ESCC-CC-GGGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCh-H-HcCCCCCCEEECCCCccCC-C-hhhccCCcccEeecC-Cccc-Cc-hhhccCCCCCEEECcCCcC
Confidence 999999988543 3 8899999999999999884 3 358899999999997 4444 22 3488999999999999998
Q ss_pred CCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCC
Q 042446 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDE 319 (445)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 319 (445)
. .++. +. .+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+....
T Consensus 190 ~-~~~~-l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--- 259 (466)
T 1o6v_A 190 S-DISV-LA-KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--- 259 (466)
T ss_dssp C-CCGG-GG-GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG---
T ss_pred C-CChh-hc-cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch---
Confidence 7 3433 44 38999999999999986544 77799999999999998754 46788999999999999987632
Q ss_pred CcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhh
Q 042446 320 MGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEM 399 (445)
Q Consensus 320 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 399 (445)
.+..+++|++|++++|.+++..+ +..++ +|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +
T Consensus 260 -----~~~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~ 327 (466)
T 1o6v_A 260 -----PLSGLTKLTELKLGANQISNISP--LAGLT-ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V 327 (466)
T ss_dssp -----GGTTCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G
T ss_pred -----hhhcCCCCCEEECCCCccCcccc--ccCCC-ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h
Confidence 27889999999999999985433 55555 99999999999985433 7889999999999999986555 7
Q ss_pred hCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 400 GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 400 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
..+++|+.|++++|++++. ..+..+++|++|++++|++++..|
T Consensus 328 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 7899999999999999854 468899999999999999998765
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=275.51 Aligned_cols=341 Identities=18% Similarity=0.203 Sum_probs=255.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.++++++.+++. | .+..+++|++|++++|.+++ ++ ++.+++|++|++++|.+++ ++ ++.+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence 6789999999999864 4 68899999999999999985 33 8899999999999999985 34 889999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+.+ ++ ++.+++|++|++++|.+.+. .+..+++|++|++++|...+.+ .+..+++|++|++++|.+++
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 9999985 44 88999999999999999864 2788999999999999655444 47889999999999999984
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
++ +..+++|+.|++++|.+.+. + +. .+++|++|++++|.+++ +| +..+++|++|++++|.+++.. +..
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~-~--l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL-D--LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC-C--CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred ec--cccCCCCCEEECcCCcCCee-c--cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence 55 78889999999999998753 2 33 48999999999999986 45 888999999999999998654 456
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcc--cccccCCCCCcEEEccCCcceecCChh--------hhhccccCcEEEcccCccc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGF--INSLANCSKLRVLSFGRNQFRGVLPHS--------ITNLSSQLQVLFLGFNQLY 368 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~ 368 (445)
+++|+.|+++.+.+.......-.. ......+++|+.|++++|...+.+|.. +...+ +|++|++++|+++
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~-~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP-KLVYLYLNNTELT 331 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCT-TCCEEECTTCCCS
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcc-cCCEEECCCCccc
Confidence 777777777776655433221110 011356788888888888765554432 12222 5666666666666
Q ss_pred ccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCCC
Q 042446 369 GSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445 (445)
Q Consensus 369 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 445 (445)
+ + .+..+++|+.|++++|++.+ ++.|..|++++|.+.+. ..+..|+.+++++|+++|.+|+
T Consensus 332 ~-l--~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 332 E-L--DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp C-C--CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred c-c--ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 4 2 25566666666666666552 23444455555555533 2345677888899999988874
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=261.77 Aligned_cols=307 Identities=26% Similarity=0.353 Sum_probs=192.0
Q ss_pred ccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 042446 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLK 158 (445)
Q Consensus 79 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (445)
+..+++|++|+++++.+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.. ++ .+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 345677777777777776 333 36677777777777777763 333 6777777777777776653 32 466677777
Q ss_pred EEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCc
Q 042446 159 GLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQ 238 (445)
Q Consensus 159 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 238 (445)
+|++++|.+.+.. . +..+++|++|++++|..... ...+..+++|++|++++|.+.+. +. +..
T Consensus 114 ~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~------------- 175 (347)
T 4fmz_A 114 ELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDV-TP-IAN------------- 175 (347)
T ss_dssp EEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCC-GG-GGG-------------
T ss_pred EEECcCCcccCch-h-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCc-hh-hcc-------------
Confidence 7777776665322 2 55566666666666543322 22355555555555555554421 11 334
Q ss_pred CCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCC
Q 042446 239 IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318 (445)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 318 (445)
+++|++|++++|.+.+..+ +..+++|+++++++|.+.+..+ +..+++|++|++++|.+....
T Consensus 176 ------------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-- 237 (347)
T 4fmz_A 176 ------------LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-- 237 (347)
T ss_dssp ------------CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--
T ss_pred ------------CCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc--
Confidence 4455555555555443211 4555666666666665553332 555666666666666654421
Q ss_pred CCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChh
Q 042446 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQE 398 (445)
Q Consensus 319 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 398 (445)
.+..+++|++|++++|.+++ + ..+..++ +|++|++++|.+++ + ..+..+++|+.|++++|.+.+..+..
T Consensus 238 ------~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~-~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 238 ------PLANLSQLTWLEIGTNQISD-I-NAVKDLT-KLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp ------GGTTCTTCCEEECCSSCCCC-C-GGGTTCT-TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred ------chhcCCCCCEEECCCCccCC-C-hhHhcCC-CcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 15566677777777776653 2 2344444 78888888887764 2 34677888888888888888777788
Q ss_pred hhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcce
Q 042446 399 MGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 399 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
+..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888888888886555 777888889988888875
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=260.17 Aligned_cols=303 Identities=28% Similarity=0.394 Sum_probs=209.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.++++++.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEEC
Confidence 789999999999874 33 4888999999999999998 4444 8999999999999999984 44 6899999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+.+ .+. +..+++|++|++++|......+ .+..+++|++|++++|.+....+ +..+++|++|++++|.+. .
T Consensus 118 ~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~ 191 (347)
T 4fmz_A 118 NEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-D 191 (347)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-C
T ss_pred cCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-c
Confidence 9999984 443 8899999999999997664444 48899999999999999874332 888999999999999987 3
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
++. +..+++|+.+++++|.+.+..+ +. .+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..
T Consensus 192 ~~~-~~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 192 ISP-LASLTSLHYFTAYVNQITDITP--VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ccc-ccCCCccceeecccCCCCCCch--hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhc
Confidence 333 6777888888888877763222 22 26666666666666653222 55566666666666655432 23444
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 378 (445)
+++|++|++++|.+... ..+..++ +|++|++++|.+++..+..+..+
T Consensus 264 l~~L~~L~l~~n~l~~~--------~~~~~l~-------------------------~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--------SVLNNLS-------------------------QLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp CTTCCEEECCSSCCCCC--------GGGGGCT-------------------------TCSEEECCSSCCCGGGHHHHHTC
T ss_pred CCCcCEEEccCCccCCC--------hhhcCCC-------------------------CCCEEECcCCcCCCcChhHhhcc
Confidence 55555555555544331 1233334 55555555555554444555555
Q ss_pred cCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
++|+.|++++|.+.+..| +..+++|+.|++++|+++
T Consensus 311 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 666666666666553333 555666666666666554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=265.25 Aligned_cols=310 Identities=19% Similarity=0.191 Sum_probs=267.0
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
.+++.++++++.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 67888999999887544445788999999999999999777789999999999999999999888888999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+++|+.+++++|.+.+
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-
Confidence 99999844444578999999999999999987788899999999999999998853 36678999999999998873
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
+...+.|+.|++++|.+. .++... .++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..
T Consensus 201 ----~~~~~~L~~L~l~~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 ----LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp ----EECCSSCSEEECCSSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ----cCCCCcceEEECCCCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 334568999999999887 444332 67999999999999863 57889999999999999999888899999
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 378 (445)
+++|++|++++|++.. ++.....+++|++|++++|.++ .+|..+..++ +|++|++++|+++. ++ +..+
T Consensus 271 l~~L~~L~L~~n~l~~-------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~-~L~~L~L~~N~i~~-~~--~~~~ 338 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLYLDHNSIVT-LK--LSTH 338 (390)
T ss_dssp CSSCCEEECCSSCCCE-------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSEEECCSSCCCC-CC--CCTT
T ss_pred cccCCEEECCCCcCcc-------cCcccCCCCCCCEEECCCCcce-ecCccccccC-cCCEEECCCCccce-eC--chhh
Confidence 9999999999999876 3334577899999999999998 6777777776 99999999999984 33 6778
Q ss_pred cCCCeeeCccCcceec
Q 042446 379 VNLYLLAMEQNQFIGT 394 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~ 394 (445)
++|+.|++++|++...
T Consensus 339 ~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 339 HTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCCSEEECCSSCEEHH
T ss_pred ccCCEEEcCCCCccch
Confidence 9999999999998743
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=272.14 Aligned_cols=343 Identities=24% Similarity=0.284 Sum_probs=173.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCC-------------CEEECCCCcCCCCCCc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRL-------------EALFLANNSLVGKIPA 125 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~i~~~~p~ 125 (445)
.+++.++++++.+ +.+|..++++++|++|++++|.+.+.+|.+++.+.+| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4566677777777 5667677777777777777766666666666555432 555555555552 232
Q ss_pred cCcCCCCCCEEEccCCcCcccCCccc----------------cCC-CCCCEEecccccCCCCCCccCCCCCCcceEeecc
Q 042446 126 NLSYCSRLTVLSLGQNKLVGSIPFEF----------------VFL-YKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSY 188 (445)
Q Consensus 126 ~l~~l~~L~~L~l~~~~~~~~~~~~~----------------~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 188 (445)
. .++|++|++++|.+++ +|..+ ... ++|++|++++|.+.+ +| .+.++++|++|++++
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred C---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence 1 1344444444444442 22211 011 456666666666653 44 366666666666666
Q ss_pred cccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccC
Q 042446 189 NSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSI 268 (445)
Q Consensus 189 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 268 (445)
|.+++ +|..+ .+|++|++++|.+++ +| .+..+++|+.|++++|.+.+ +|.. .++|++|++++|.+. .+
T Consensus 163 N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 163 NSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-EL 230 (454)
T ss_dssp SCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SC
T ss_pred CcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-cc
Confidence 66653 33322 366666666666663 44 46666677777777766652 3322 346777777777666 34
Q ss_pred cccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCccee--cC
Q 042446 269 PVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG--VL 346 (445)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~ 346 (445)
| .+..+++|++|++++|.+.+. +. .+++|++|++++|.+...+. ..++|++|++++|.+++ .+
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l~~----------~~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDLPE----------LPQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSEESCC
T ss_pred c-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccccCc----------ccCcCCEEECcCCccCcccCc
Confidence 4 366777777777777766542 21 23566666666666554221 11344455555444443 11
Q ss_pred Chh-------------hhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCC
Q 042446 347 PHS-------------ITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGN 413 (445)
Q Consensus 347 ~~~-------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 413 (445)
|.. +...+++|++|++++|++++ +|.. +++|+.|++++|.+. .+|. .+++|+.|++++|
T Consensus 296 ~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCC
Confidence 110 11222367777777777764 4433 477888888888877 5665 4678888888888
Q ss_pred cccc--cccccccCC-------------CCCCeEEccCCccee--cCC
Q 042446 414 HFSG--KIPSTLGNL-------------SSLSEIVLSNNNLSG--VIP 444 (445)
Q Consensus 414 ~i~~--~~~~~l~~l-------------~~L~~l~l~~n~~~~--~~p 444 (445)
++++ .+|..+..+ ++|++|++++|++++ .+|
T Consensus 368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp CCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 8887 577777666 788888888888887 566
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=261.94 Aligned_cols=302 Identities=18% Similarity=0.197 Sum_probs=223.3
Q ss_pred cccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccC
Q 042446 74 SLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVF 153 (445)
Q Consensus 74 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 153 (445)
..+..++.+++|++|+++++.+++ +| .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+++. + ++.
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 334567789999999999999985 45 68999999999999999995 44 88999999999999999853 3 889
Q ss_pred CCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEE
Q 042446 154 LYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFS 233 (445)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 233 (445)
+++|++|++++|.+.+. + +..+++|++|++++|.+++ + .++++++|++|++++|...+.+ .+..+++|+.|+
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 99999999999999863 3 8899999999999999986 3 3888999999999999654454 477899999999
Q ss_pred ccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCC
Q 042446 234 VSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLG 313 (445)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 313 (445)
+++|.+.+ ++ +. .+++|+.|++++|.+++. .+..+++|++|++++|.+++. + +..+++|++|++++|.+.
T Consensus 177 ls~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 177 CSFNKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CCSSCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS
T ss_pred CCCCccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCC
Confidence 99999984 55 33 489999999999999864 488899999999999999874 3 788999999999999987
Q ss_pred CCCCCCCcccccccCCCCCcEEEccC----------CcceecCChhhhhccccCcEEEcccCcccccCCc--------cc
Q 042446 314 SGESDEMGFINSLANCSKLRVLSFGR----------NQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPS--------GI 375 (445)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~ 375 (445)
... ...+++|+.|+++. |.+.+.+|. ..++ +|++|++++|...+.+|. .+
T Consensus 247 ~~~---------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~l~-~L~~L~Ls~n~~l~~l~~~~~~L~~L~l 314 (457)
T 3bz5_A 247 ELD---------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EGCR-KIKELDVTHNTQLYLLDCQAAGITELDL 314 (457)
T ss_dssp CCC---------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TTCT-TCCCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred CcC---------HHHCCCCCEEeccCCCCCEEECCCCccCCcccc--cccc-cCCEEECCCCcccceeccCCCcceEech
Confidence 743 23455555555544 433333331 2222 566666666654333322 12
Q ss_pred cCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 376 GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 376 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
..+++|+.|++++|++++ ++ +..+++|+.|++++|+++
T Consensus 315 ~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 315 SQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp TTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCC
T ss_pred hhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCC
Confidence 333444445554444443 21 444445555555555444
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=276.19 Aligned_cols=371 Identities=22% Similarity=0.223 Sum_probs=241.8
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.+++++|.+++..+.++.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|+++++|++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 68999999999998777778999999999999999999777778999999999999999999777778999999999999
Q ss_pred cCCcCcc-cCCccccCCCCCCEEecccccCCCCCCccCCCCCCc----ceEeecccccccccCc----------------
Q 042446 139 GQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL----ELVSLSYNSFEGNIPD---------------- 197 (445)
Q Consensus 139 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l~~~~~~~~~~~---------------- 197 (445)
++|.+.. ..|..+..+++|++|++++|.+.+..+..+..+.++ ..++++.|.+....+.
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccc
Confidence 9999874 357788999999999999998876544433322211 1222332222211000
Q ss_pred -----------------------------------------------------------------ccCCCCCCCEEEccC
Q 042446 198 -----------------------------------------------------------------SLGQLKELKSLAIGV 212 (445)
Q Consensus 198 -----------------------------------------------------------------~l~~l~~L~~L~l~~ 212 (445)
.+....+++.+.+.+
T Consensus 236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 000111122222222
Q ss_pred CCCcccCCccCcCCCCCcEEEccCCcCCC--------------------CCCcccccCCCCccEEEccCCcCcc--cCc-
Q 042446 213 NNLSGKIPPSICNLSFLVNFSVSQNQIHG--------------------SLPSCLGLNFPNLKFFQIDQNFFTG--SIP- 269 (445)
Q Consensus 213 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------------------~~~~~~~~~~~~L~~L~l~~~~~~~--~~~- 269 (445)
+.+.. ...+.....++.|++.++.+.+ ..+. .. .+++|+.+++++|.+.. ..+
T Consensus 316 ~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~-~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 316 VTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-EV-DLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp CEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC-CC-BCTTCCEEECCSSCCBEEEECCH
T ss_pred ccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc-cc-cccccccchhhcccccccccccc
Confidence 21110 0111222334444444333221 1111 11 25666666666665532 122
Q ss_pred ----------------------ccCcCCCCCCEEECccCcCccc-CcccccCCCCCCEEEccCCcCCCCCCCCCcccccc
Q 042446 270 ----------------------VSLSNASKLEVIQIANNSFSGK-FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326 (445)
Q Consensus 270 ----------------------~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 326 (445)
..+..+++|+.+++..+..... ....+..+++++.++++.|.+... .+..+
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~------~~~~~ 465 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA------FNGIF 465 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC------CTTTT
T ss_pred chhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccc------ccccc
Confidence 2334455555555555543322 223455566666666666665542 23345
Q ss_pred cCCCCCcEEEccCCccee-cCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCC
Q 042446 327 ANCSKLRVLSFGRNQFRG-VLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNL 405 (445)
Q Consensus 327 ~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 405 (445)
..++.|+.|++++|.+.+ ..|..+..+. +|++|++++|++++..|..+..+++|+.|+|++|++.+..+..+..+++|
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~-~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhcc-ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 667788888888876433 3455555555 78888888888887777778888888888888888886667778888888
Q ss_pred CeEEccCCcccccccccccCC-CCCCeEEccCCcce
Q 042446 406 QGLDFGGNHFSGKIPSTLGNL-SSLSEIVLSNNNLS 440 (445)
Q Consensus 406 ~~L~l~~n~i~~~~~~~l~~l-~~L~~l~l~~n~~~ 440 (445)
+.|+|++|++++..|..+.++ ++|+.|++++|++.
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 888888888887777777777 57888888888765
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=273.07 Aligned_cols=310 Identities=19% Similarity=0.184 Sum_probs=269.2
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..++.++++++.+....+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..++++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 56788999999887655555788999999999999999888889999999999999999999888888999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+....+..|+.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+++|+.|++++|.+.+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-
Confidence 99999955555679999999999999999988888899999999999999998853 35678999999999998873
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
+...+.|+.|++++|.+. .++... .++|+.|++++|.+++ +..+..+++|++|++++|.+.+..+..+..
T Consensus 207 ----l~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp ----EECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ----ccCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 345578999999999886 444332 5789999999999986 467899999999999999999888999999
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 378 (445)
+++|+.|++++|.+.. ++.....+++|+.|++++|.++ .+|..+..++ +|++|++++|.+++. + +..+
T Consensus 277 l~~L~~L~Ls~N~l~~-------l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~-~L~~L~L~~N~l~~~-~--~~~~ 344 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLYLDHNSIVTL-K--LSTH 344 (597)
T ss_dssp CSSCCEEECTTSCCCE-------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSEEECCSSCCCCC-C--CCTT
T ss_pred ccCCCEEECCCCCCCC-------CCcccccCCCCcEEECCCCCCC-ccCcccccCC-CCCEEECCCCCCCCc-C--hhhc
Confidence 9999999999999876 3445577899999999999998 6787787776 999999999999843 3 6678
Q ss_pred cCCCeeeCccCcceec
Q 042446 379 VNLYLLAMEQNQFIGT 394 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~ 394 (445)
++|+.|++++|++...
T Consensus 345 ~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 345 HTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCCSEEECCSSCEEHH
T ss_pred CCCCEEEeeCCCCCCh
Confidence 9999999999998743
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=256.95 Aligned_cols=268 Identities=17% Similarity=0.245 Sum_probs=170.8
Q ss_pred cChhhHHHHHHHHHhccCCCCCCCCCC----CCCCCCcceeeeEeCC--------CCCcEEEEEcCCCCCcccccccccC
Q 042446 14 FEEGDRAALQAFKSMIAHDPQRILNSW----NDSRHFCEWDGVTCGR--------RHRRVIALDLMSKALSGSLSPHIGN 81 (445)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~~~w----~~~~~~c~~~~~~~~~--------~~~~v~~l~l~~~~~~~~~~~~l~~ 81 (445)
....+++++.+|++....|+..+...| ....++|.|.|+.|.. ...+|+.++++++.++ .+|..+.+
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 445788999999999988998888899 5667899999998842 2357777888887776 56777777
Q ss_pred CCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccC--------
Q 042446 82 LSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVF-------- 153 (445)
Q Consensus 82 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-------- 153 (445)
+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++|++++|...+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 788888888888777 77777777778888888877777 66777777777888877777666666655443
Q ss_pred -CCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEE
Q 042446 154 -LYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNF 232 (445)
Q Consensus 154 -l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 232 (445)
+++|++|++++|.+. .+|..+.++++|++|++++|.+. .++..+.++++|++|++++|.+.+.+|..+..+
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l------ 252 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR------ 252 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC------
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCC------
Confidence 555555555555544 44444444555555555555444 233344444455555555444444444444444
Q ss_pred EccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCc
Q 042446 233 SVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSN 311 (445)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 311 (445)
++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.+.+..+.
T Consensus 253 -------------------~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 253 -------------------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp -------------------CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred -------------------CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 455555555544444445555555555555555555555555555555555555555443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=245.28 Aligned_cols=243 Identities=22% Similarity=0.222 Sum_probs=147.8
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 042446 84 FLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLH 163 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (445)
++++++++++.++ .+|..+ .++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4566666666655 444433 2466666666666665555566666666666666666665555666666666666666
Q ss_pred cccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcc--cCCccCcCCCCCcEEEccCCcCCC
Q 042446 164 KNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG--KIPPSICNLSFLVNFSVSQNQIHG 241 (445)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 241 (445)
+|.+. .+|..+. ++|++|++++|.+....+..+.++++|++|++++|.++. ..+..+..+ +|+.|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT- 185 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence 66665 3333332 566677777666664444456667777777777776642 445555555 6777777777665
Q ss_pred CCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCc
Q 042446 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMG 321 (445)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 321 (445)
.+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 186 ~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------- 255 (332)
T 2ft3_A 186 GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR------- 255 (332)
T ss_dssp SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-------
T ss_pred ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-------
Confidence 344433 2566666777766665555666667777777777776665555556666666666666665543
Q ss_pred ccccccCCCCCcEEEccCCccee
Q 042446 322 FINSLANCSKLRVLSFGRNQFRG 344 (445)
Q Consensus 322 ~~~~l~~~~~L~~L~l~~~~~~~ 344 (445)
++..+..+++|++|++++|.+++
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCB
T ss_pred cChhhhcCccCCEEECCCCCCCc
Confidence 23345555666666666665553
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=242.13 Aligned_cols=224 Identities=21% Similarity=0.253 Sum_probs=128.0
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSL 162 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (445)
+.+++|++++|.+++..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|..+.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---------- 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---------- 120 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC----------
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc----------
Confidence 44555555555555444444555555555555555555444555555555555555555544 2332221
Q ss_pred ccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcc--cCCccCcCCCCCcEEEccCCcCC
Q 042446 163 HKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG--KIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 121 ----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 121 ----------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp ----------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred ----------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 345555555555544333445555566666665555532 34455555666666666666655
Q ss_pred CCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCC
Q 042446 241 GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEM 320 (445)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 320 (445)
.+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 185 -~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------ 254 (330)
T 1xku_A 185 -TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK------ 254 (330)
T ss_dssp -SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS------
T ss_pred -cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc------
Confidence 344333 3567777777777666656667777777777777777766655566666777777777766653
Q ss_pred cccccccCCCCCcEEEccCCccee
Q 042446 321 GFINSLANCSKLRVLSFGRNQFRG 344 (445)
Q Consensus 321 ~~~~~l~~~~~L~~L~l~~~~~~~ 344 (445)
++..+..+++|++|++++|.+++
T Consensus 255 -lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 255 -VPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp -CCTTTTTCSSCCEEECCSSCCCC
T ss_pred -CChhhccCCCcCEEECCCCcCCc
Confidence 33345566666666666666653
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-35 Score=287.71 Aligned_cols=379 Identities=18% Similarity=0.158 Sum_probs=283.3
Q ss_pred CcEEEEEcCCCCCccccccc-ccCCCCCCEEECCCCccccc----CCccccCCCCCCEEECCCCcCCCCCCccC-cCCC-
Q 042446 59 RRVIALDLMSKALSGSLSPH-IGNLSFLREINLMDNTIQGE----IPPEFGRLFRLEALFLANNSLVGKIPANL-SYCS- 131 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~p~~l-~~l~- 131 (445)
+++++++++++.+++..... +..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 57899999999987654333 67889999999999998743 46678889999999999999875333333 2344
Q ss_pred ---CCCEEEccCCcCcc----cCCccccCCCCCCEEecccccCCCCCCcc-----CCCCCCcceEeecccccccc----c
Q 042446 132 ---RLTVLSLGQNKLVG----SIPFEFVFLYKLKGLSLHKNNLTGGISPF-----LGNLTFLELVSLSYNSFEGN----I 195 (445)
Q Consensus 132 ---~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----l~~~~~L~~L~l~~~~~~~~----~ 195 (445)
+|++|++++|.+.. .++..+..+++|++|++++|.++...+.. ....++|++|++++|.++.. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999884 45778899999999999999876432222 22356899999999988853 3
Q ss_pred CcccCCCCCCCEEEccCCCCcccCCccCc-----CCCCCcEEEccCCcCCCC----CCcccccCCCCccEEEccCCcCcc
Q 042446 196 PDSLGQLKELKSLAIGVNNLSGKIPPSIC-----NLSFLVNFSVSQNQIHGS----LPSCLGLNFPNLKFFQIDQNFFTG 266 (445)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~ 266 (445)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+.+. ++..+.. +++|++|++++|.+++
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS-KASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh-CCCccEEeccCCcCCh
Confidence 45666789999999999998754444433 356999999999988753 3444544 8999999999998875
Q ss_pred cC-----cccCcCCCCCCEEECccCcCccc----CcccccCCCCCCEEEccCCcCCCCCCCCCccccccc-CCCCCcEEE
Q 042446 267 SI-----PVSLSNASKLEVIQIANNSFSGK----FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLA-NCSKLRVLS 336 (445)
Q Consensus 267 ~~-----~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~ 336 (445)
.. +.....+++|++|++++|.+++. .+..+..+++|++|++++|.+.+.... .+...+. ..++|++|+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--LLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH--HHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH--HHHHHhccCCccceeeE
Confidence 32 22334689999999999998764 455567799999999999987542111 1122222 236999999
Q ss_pred ccCCcceec----CChhhhhccccCcEEEcccCcccccCCccccC-----ccCCCeeeCccCccee----cCChhhhCCC
Q 042446 337 FGRNQFRGV----LPHSITNLSSQLQVLFLGFNQLYGSIPSGIGN-----LVNLYLLAMEQNQFIG----TIPQEMGKLL 403 (445)
Q Consensus 337 l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~----~~~~~~~~~~ 403 (445)
+++|.+++. ++..+...+ +|++|++++|.+++..+..+.. .++|+.|++++|.+++ .++..+..++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNR-FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCS-SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred cCCCCCchHHHHHHHHHHhhCC-CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 999998765 334444445 8999999999988654444432 6799999999999885 6788888899
Q ss_pred CCCeEEccCCcccccccccc----c-CCCCCCeEEccCCccee
Q 042446 404 NLQGLDFGGNHFSGKIPSTL----G-NLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 404 ~L~~L~l~~n~i~~~~~~~l----~-~l~~L~~l~l~~n~~~~ 441 (445)
+|+.|++++|++++.....+ . ...+|+.|++.++.+..
T Consensus 399 ~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 99999999999886533222 2 24578999888877654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-30 Score=239.90 Aligned_cols=291 Identities=21% Similarity=0.262 Sum_probs=172.7
Q ss_pred CCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeec
Q 042446 108 RLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLS 187 (445)
Q Consensus 108 ~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 187 (445)
++++++++++.+. .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5677777777766 4555443 567777777777765555566677777777777777665556666666666666666
Q ss_pred ccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCccc
Q 042446 188 YNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGS 267 (445)
Q Consensus 188 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 267 (445)
+|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. .+.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~ 162 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-----------------------SGI 162 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-----------------------GGB
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc-----------------------cCc
Confidence 66665 3443332 556666666666554444445555555555555554431 012
Q ss_pred CcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCC
Q 042446 268 IPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLP 347 (445)
Q Consensus 268 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 347 (445)
.+..+..+++|++|++++|.+... +..+ .++|++|++++|.+... .+..+..+++|++|++++|.+++..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITTI-PQGL--PPSLTELHLDGNKITKV------DAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCEE------CTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred ChhhccCCCCcCEEECCCCccccC-Cccc--cccCCEEECCCCcCCcc------CHHHhcCCCCCCEEECCCCcCceeCh
Confidence 333444555555555555554432 1111 14555666665555442 12345556666666666666665444
Q ss_pred hhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhC------CCCCCeEEccCCcccc--cc
Q 042446 348 HSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGK------LLNLQGLDFGGNHFSG--KI 419 (445)
Q Consensus 348 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~i~~--~~ 419 (445)
..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+.. .++++.+++++|++.. ..
T Consensus 234 ~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~ 311 (330)
T 1xku_A 234 GSLANTP-HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311 (330)
T ss_dssp TTGGGST-TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred hhccCCC-CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence 4555554 6777777777766 56666667777777777777776444444432 3678888888888753 44
Q ss_pred cccccCCCCCCeEEccCCc
Q 042446 420 PSTLGNLSSLSEIVLSNNN 438 (445)
Q Consensus 420 ~~~l~~l~~L~~l~l~~n~ 438 (445)
|..+..+++++.+++++|+
T Consensus 312 ~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGGGTTCCCGGGEEC----
T ss_pred ccccccccceeEEEecccC
Confidence 5677778888888888875
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-30 Score=247.43 Aligned_cols=325 Identities=26% Similarity=0.358 Sum_probs=206.8
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.++++++.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++.+++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 467777777777765 4432 3677778887777763 2221 2578888888888774 66 4777888888888
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+.+ +|..+ .+|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|... ++|++|++++|.+. .
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-E 229 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-S
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-c
Confidence 8887763 44332 478888888887775 44 47778888888888887763 33322 47888888888777 6
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
+| .+..+++|+.|++++|.+. .+|. .+++|++|++++|.+.+ +|.. .++|++|++++|.+++... -
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~----~ 295 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE----L 295 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC----C
T ss_pred cc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC----c
Confidence 66 3777888888888888776 3443 25678888888888775 4433 3678888888888765321 1
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCC-CCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccC
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANC-SKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGN 377 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 377 (445)
.++|++|++++|.+... ... ++|++|++++|++++ +|.. .++|++|++++|.++ .+|. .
T Consensus 296 ~~~L~~L~l~~N~l~~i-----------~~~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~---~ 355 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSL-----------CDLPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPE---L 355 (454)
T ss_dssp CTTCCEEECCSSCCSEE-----------CCCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCC---C
T ss_pred CCcCCEEECcCCcCCcc-----------cCCcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCccc-cccc---h
Confidence 26788888888877552 122 589999999999984 5543 248999999999998 4666 4
Q ss_pred ccCCCeeeCccCccee--cCChhhhCC-------------CCCCeEEccCCcccc--cccccccCCCCCCeEEccCCcce
Q 042446 378 LVNLYLLAMEQNQFIG--TIPQEMGKL-------------LNLQGLDFGGNHFSG--KIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 378 ~~~L~~L~l~~n~~~~--~~~~~~~~~-------------~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
+++|+.|++++|++.+ .+|..+..+ ++|+.|++++|++++ .+|. +++.|.+.+|.+.
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVV 429 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------------
T ss_pred hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccC
Confidence 7899999999999997 678888777 899999999999986 4443 5677788888887
Q ss_pred ecCC
Q 042446 441 GVIP 444 (445)
Q Consensus 441 ~~~p 444 (445)
+.+|
T Consensus 430 ~~~~ 433 (454)
T 1jl5_A 430 DPYE 433 (454)
T ss_dssp ----
T ss_pred Cccc
Confidence 7654
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.98 E-value=6e-35 Score=284.01 Aligned_cols=356 Identities=19% Similarity=0.146 Sum_probs=184.9
Q ss_pred CCCEEECCCCcccccCCcc-ccCCCCCCEEECCCCcCCC----CCCccCcCCCCCCEEEccCCcCcccCCccc-cCCC--
Q 042446 84 FLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVG----KIPANLSYCSRLTVLSLGQNKLVGSIPFEF-VFLY-- 155 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~-- 155 (445)
+|++|+++++.++...... +..+++|++|++++|.+.+ .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4556666666654332222 4556666666666666552 234445555666666666666553322222 1233
Q ss_pred --CCCEEecccccCCC----CCCccCCCCCCcceEeecccccccccCccc-----CCCCCCCEEEccCCCCccc----CC
Q 042446 156 --KLKGLSLHKNNLTG----GISPFLGNLTFLELVSLSYNSFEGNIPDSL-----GQLKELKSLAIGVNNLSGK----IP 220 (445)
Q Consensus 156 --~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~~----~~ 220 (445)
+|++|++++|.++. .++..+..+++|++|++++|.+....+..+ ...++|++|++++|.+++. ++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 46666666666552 234555566666666666666543222211 2234566666666665532 23
Q ss_pred ccCcCCCCCcEEEccCCcCCCCCCcccc----cCCCCccEEEccCCcCccc----CcccCcCCCCCCEEECccCcCcccC
Q 042446 221 PSICNLSFLVNFSVSQNQIHGSLPSCLG----LNFPNLKFFQIDQNFFTGS----IPVSLSNASKLEVIQIANNSFSGKF 292 (445)
Q Consensus 221 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~ 292 (445)
..+..+++|++|++++|.+.+..+..+. ...++|++|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 3344456666666666655432222221 1234666666666665542 2444555666666666666654432
Q ss_pred c-----ccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhc----cccCcEEEcc
Q 042446 293 S-----VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL----SSQLQVLFLG 363 (445)
Q Consensus 293 ~-----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~ 363 (445)
. ..+..+++|++|++++|.++..... .++..+..+++|++|++++|.+.+..+..+... .++|++|+++
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCG--DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHH--HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 1 1122456666666666655442110 133344556666666666666554333333322 1256666666
Q ss_pred cCccccc----CCccccCccCCCeeeCccCcceecCChhhhC-----CCCCCeEEccCCcccc----cccccccCCCCCC
Q 042446 364 FNQLYGS----IPSGIGNLVNLYLLAMEQNQFIGTIPQEMGK-----LLNLQGLDFGGNHFSG----KIPSTLGNLSSLS 430 (445)
Q Consensus 364 ~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~i~~----~~~~~l~~l~~L~ 430 (445)
+|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++|+.|++++|.+++ .++..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 6666543 2334445566666666666655433333321 4566666666666654 4555555566666
Q ss_pred eEEccCCccee
Q 042446 431 EIVLSNNNLSG 441 (445)
Q Consensus 431 ~l~l~~n~~~~ 441 (445)
+|++++|++++
T Consensus 402 ~L~l~~N~i~~ 412 (461)
T 1z7x_W 402 ELDLSNNCLGD 412 (461)
T ss_dssp EEECCSSSCCH
T ss_pred EEECCCCCCCH
Confidence 66666666543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=8.2e-32 Score=247.51 Aligned_cols=252 Identities=28% Similarity=0.414 Sum_probs=157.1
Q ss_pred CcceEeeccccccc--ccCcccCCCCCCCEEEccC-CCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccE
Q 042446 180 FLELVSLSYNSFEG--NIPDSLGQLKELKSLAIGV-NNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKF 256 (445)
Q Consensus 180 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 256 (445)
+++.|+++++.+.+ .+|..+.++++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCCE
Confidence 34444444444443 3444444444444444442 4444444444444455555555555444444444433 455555
Q ss_pred EEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCC-CCCEEEccCCcCCCCCCCCCcccccccCCCCCcEE
Q 042446 257 FQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMK-NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVL 335 (445)
Q Consensus 257 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 335 (445)
|++++|.+.+..|..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+.. .++..+..++ |++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~------~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG------KIPPTFANLN-LAFV 202 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE------ECCGGGGGCC-CSEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec------cCChHHhCCc-ccEE
Confidence 55555555545555555556666666666666555555555555 66666666665543 2333444454 7777
Q ss_pred EccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcc
Q 042446 336 SFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHF 415 (445)
Q Consensus 336 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i 415 (445)
++++|.+++..+..+..++ +|++|++++|.+++..+. +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp ECCSSEEEECCGGGCCTTS-CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhcCC-CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 7777777766666666665 788888888877754444 66778888888888888888888888888888888888888
Q ss_pred cccccccccCCCCCCeEEccCCc-ceec
Q 042446 416 SGKIPSTLGNLSSLSEIVLSNNN-LSGV 442 (445)
Q Consensus 416 ~~~~~~~l~~l~~L~~l~l~~n~-~~~~ 442 (445)
++.+|.. ..+++|+.+++++|+ ++|.
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred cccCCCC-ccccccChHHhcCCCCccCC
Confidence 8777775 778888888888888 6654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=240.28 Aligned_cols=288 Identities=22% Similarity=0.276 Sum_probs=168.0
Q ss_pred CCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeec
Q 042446 108 RLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLS 187 (445)
Q Consensus 108 ~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 187 (445)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4666666666665 4454432 466666666666654445555666666666666665554445555555555555555
Q ss_pred ccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc-
Q 042446 188 YNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG- 266 (445)
Q Consensus 188 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 266 (445)
+|.+. .+|..+. ++|++|++++|.+.+..+..+.. +++|++|++++|.++.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~-------------------------l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSG-------------------------LRNMNCIEMGGNPLENS 162 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSS-------------------------CSSCCEEECCSCCCBGG
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCC-------------------------CccCCEEECCCCccccC
Confidence 55554 3333322 44555555555544333333444 4455555555554432
Q ss_pred -cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceec
Q 042446 267 -SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGV 345 (445)
Q Consensus 267 -~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 345 (445)
..+..+..+ +|++|++++|.+++. +..+. ++|++|++++|.+.... +..+..+++|++|++++|.+.+.
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~------~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIE------LEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCC------TTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CCCcccccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccC------HHHhcCCCCCCEEECCCCcCCcC
Confidence 334444444 666666666665532 22222 56666666666665532 23456667777777777777655
Q ss_pred CChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhC------CCCCCeEEccCCccc--c
Q 042446 346 LPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGK------LLNLQGLDFGGNHFS--G 417 (445)
Q Consensus 346 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~i~--~ 417 (445)
.+..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+.. .++|+.|++++|++. +
T Consensus 233 ~~~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 233 ENGSLSFLP-TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CTTGGGGCT-TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred ChhHhhCCC-CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 555555555 7777777777776 56667777777888888877777544444443 356888888888876 4
Q ss_pred cccccccCCCCCCeEEccCCc
Q 042446 418 KIPSTLGNLSSLSEIVLSNNN 438 (445)
Q Consensus 418 ~~~~~l~~l~~L~~l~l~~n~ 438 (445)
..+..+..+++|+.+++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 566778888888888888875
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-29 Score=231.37 Aligned_cols=286 Identities=18% Similarity=0.179 Sum_probs=215.6
Q ss_pred CCCCCCCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCc
Q 042446 39 SWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNS 118 (445)
Q Consensus 39 ~w~~~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 118 (445)
.|......|.|.++ | +.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 22 ~~~~~~~~C~~~~~-c----------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-C----------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-E----------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-e----------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 45666677777654 3 44566665 4565544 589999999999997767789999999999999999
Q ss_pred CCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCC-ccCCCCCCcceEeeccc-ccccccC
Q 042446 119 LVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGIS-PFLGNLTFLELVSLSYN-SFEGNIP 196 (445)
Q Consensus 119 i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~-~~~~~~~ 196 (445)
+++..|..+.++++|++|++++|.+++..+..+.++++|++|++++|.+..... ..+..+++|++|++++| .+....+
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 998778889999999999999999985444558999999999999999885444 47889999999999998 4665667
Q ss_pred cccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccC---c
Q 042446 197 DSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSL---S 273 (445)
Q Consensus 197 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~ 273 (445)
..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+. .++..+...+++|++|++++|.+++..+..+ .
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 78999999999999999999888899999999999999999885 6666555558899999999998886444333 3
Q ss_pred CCCCCCEEECccCcCccc----CcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceec
Q 042446 274 NASKLEVIQIANNSFSGK----FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGV 345 (445)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 345 (445)
..+.++.+++.++.+.+. .+..+..+++|++|++++|++...+.. .+..+++|++|++++|.+.+.
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~------~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG------IFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSSCBCCC
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH------HHhcCCCCCEEEeeCCCccCc
Confidence 456677777777766542 344556677777777777766543211 235666677777777666543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=222.82 Aligned_cols=253 Identities=22% Similarity=0.261 Sum_probs=157.8
Q ss_pred CCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCC--
Q 042446 45 HFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGK-- 122 (445)
Q Consensus 45 ~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-- 122 (445)
..|.|.++.|.. +.++ .+|..+ .++|++|++++|.++...+..+.++++|++|++++|.+...
T Consensus 5 C~C~~~~l~c~~------------~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 69 (306)
T 2z66_A 5 CSCSGTEIRCNS------------KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69 (306)
T ss_dssp CEEETTEEECCS------------SCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE
T ss_pred CeeCCCEEEcCC------------CCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC
Confidence 446776666644 3343 344333 26788999999888844444578888999999988887732
Q ss_pred CCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCC-ccCCCCCCcceEeecccccccccCcccCC
Q 042446 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGIS-PFLGNLTFLELVSLSYNSFEGNIPDSLGQ 201 (445)
Q Consensus 123 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 201 (445)
.+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 70 ~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 148 (306)
T 2z66_A 70 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148 (306)
T ss_dssp EEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred cccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence 2556667888888888888877 566667788888888888887765443 45667777777777777776666666666
Q ss_pred CCCCCEEEccCCCCcc-cCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCE
Q 042446 202 LKELKSLAIGVNNLSG-KIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEV 280 (445)
Q Consensus 202 l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (445)
+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+. +..+..+..+++|++
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------------~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-------------------------QLSPTAFNSLSSLQV 203 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-------------------------EECTTTTTTCTTCCE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC-------------------------CcCHHHhcCCCCCCE
Confidence 7777777777776654 34555555555555555555554 333444444455555
Q ss_pred EECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCC-CCCcEEEccCCccee
Q 042446 281 IQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANC-SKLRVLSFGRNQFRG 344 (445)
Q Consensus 281 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 344 (445)
|++++|.+.+..+..+..+++|++|++++|.+... .+..+..+ ++|++|++++|.+..
T Consensus 204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS------KKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC------SSSSCCCCCTTCCEEECTTCCEEC
T ss_pred EECCCCccCccChhhccCcccCCEeECCCCCCccc------CHHHHHhhhccCCEEEccCCCeec
Confidence 55555555444444445555555555555555442 12233344 256666666665543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-28 Score=225.83 Aligned_cols=277 Identities=19% Similarity=0.205 Sum_probs=139.2
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEE
Q 042446 130 CSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLA 209 (445)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 209 (445)
|+.....+.+++.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344445566666555 4444333 3566666666666544444555666666666666666554455555666666666
Q ss_pred ccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCc-ccccCCCCccEEEccCCc-CcccCcccCcCCCCCCEEECccCc
Q 042446 210 IGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS-CLGLNFPNLKFFQIDQNF-FTGSIPVSLSNASKLEVIQIANNS 287 (445)
Q Consensus 210 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~ 287 (445)
+++|.+++..+..+..+++|++|++++|.+. .++. .....+++|++|++++|. +.+..+..+..+++|++|++++|.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 6666555322223455555555555555554 3333 222225555555555542 333333444445555555555555
Q ss_pred CcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcc
Q 042446 288 FSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQL 367 (445)
Q Consensus 288 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 367 (445)
+.+..+..+..+ ++|++|++++|.+. .++..+....++|++|++++|.+
T Consensus 186 l~~~~~~~l~~l------------------------------~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 186 LQSYEPKSLKSI------------------------------QNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp CCEECTTTTTTC------------------------------SEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBC
T ss_pred cCccCHHHHhcc------------------------------ccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcc
Confidence 444444444444 44555555554443 22322222222555555555555
Q ss_pred cccCCccc---cCccCCCeeeCccCccee----cCChhhhCCCCCCeEEccCCccccccccc-ccCCCCCCeEEccCCcc
Q 042446 368 YGSIPSGI---GNLVNLYLLAMEQNQFIG----TIPQEMGKLLNLQGLDFGGNHFSGKIPST-LGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 368 ~~~~~~~~---~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~l~l~~n~~ 439 (445)
++..+..+ .....++.++++++.+.+ .+|..+..+++|+.|++++|+++ .+|.. +.++++|++|++++|++
T Consensus 235 ~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence 43222221 123344555555544432 34555566666666666666666 34433 45666666666666666
Q ss_pred eec
Q 042446 440 SGV 442 (445)
Q Consensus 440 ~~~ 442 (445)
.+.
T Consensus 314 ~~~ 316 (353)
T 2z80_A 314 DCS 316 (353)
T ss_dssp CCC
T ss_pred cCc
Confidence 554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=217.23 Aligned_cols=281 Identities=18% Similarity=0.175 Sum_probs=186.3
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCccc--CCccccCCCCCCEEecc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGS--IPFEFVFLYKLKGLSLH 163 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~ 163 (445)
+.++++++.++ .+|..+ .++|++|++++|.++...+..+.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666665 444433 25677777777777643334456677777777777766522 13444455666666666
Q ss_pred cccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCC-ccCcCCCCCcEEEccCCcCCCC
Q 042446 164 KNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIP-PSICNLSFLVNFSVSQNQIHGS 242 (445)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~ 242 (445)
+|.+. .++..+..+++| ++|++++|.+.+..+ ..+..+++|+.|++++|.+.+.
T Consensus 87 ~n~i~-~l~~~~~~l~~L------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQL------------------------EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp SCSEE-EEEEEEETCTTC------------------------CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCccc-cChhhcCCCCCC------------------------CEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 65544 233334444444 444444444442222 3444555555555555555433
Q ss_pred CCcccccCCCCccEEEccCCcCcc-cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCc
Q 042446 243 LPSCLGLNFPNLKFFQIDQNFFTG-SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMG 321 (445)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 321 (445)
.+..+.. +++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.....
T Consensus 142 ~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---- 216 (306)
T 2z66_A 142 FNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT---- 216 (306)
T ss_dssp STTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS----
T ss_pred chhhccc-CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh----
Confidence 3333333 6667777777777665 467788899999999999999998888899999999999999999877432
Q ss_pred ccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccC--CccccCccCCCeeeCccCcceecCChhh
Q 042446 322 FINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSI--PSGIGNLVNLYLLAMEQNQFIGTIPQEM 399 (445)
Q Consensus 322 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 399 (445)
..+..+++|++|++++|.+++..+..+...+++|++|++++|++++.- ......+...+.+.+..+.+....|..+
T Consensus 217 --~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 217 --FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp --GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred --hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 256789999999999999998888888887668999999999997532 1223344556666777777766667766
Q ss_pred hC
Q 042446 400 GK 401 (445)
Q Consensus 400 ~~ 401 (445)
.+
T Consensus 295 ~g 296 (306)
T 2z66_A 295 QG 296 (306)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=218.54 Aligned_cols=236 Identities=17% Similarity=0.216 Sum_probs=198.2
Q ss_pred CCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 042446 81 NLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGL 160 (445)
Q Consensus 81 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (445)
...++++|+++++.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 78888888999999999999998 78888899999999999999888 778888899999999
Q ss_pred ecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC
Q 042446 161 SLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 161 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
++++|...+.+|..+.. . .....+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 99998777777765432 0 12233556778888888888877 77777888888888888888887
Q ss_pred CCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCC
Q 042446 241 GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEM 320 (445)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 320 (445)
.++..+.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 220 -~l~~~l~~-l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~------ 291 (328)
T 4fcg_A 220 -ALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS------ 291 (328)
T ss_dssp -CCCGGGGG-CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC------
T ss_pred -cCchhhcc-CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh------
Confidence 46665554 8889999999988888889999999999999999999988899899999999999999999877
Q ss_pred cccccccCCCCCcEEEccCCcce
Q 042446 321 GFINSLANCSKLRVLSFGRNQFR 343 (445)
Q Consensus 321 ~~~~~l~~~~~L~~L~l~~~~~~ 343 (445)
.+|..+..+++|+.+.+..+.+.
T Consensus 292 ~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCGGGGGSCTTCEEECCGGGSC
T ss_pred hccHHHhhccCceEEeCCHHHHH
Confidence 67889999999999999987654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-31 Score=262.68 Aligned_cols=327 Identities=14% Similarity=0.100 Sum_probs=157.3
Q ss_pred CCCCCCEEECCCCcCCCC----CCccCcCCCCCCEEEccCCcCc----ccCCccccCCCCCCEEecccccCCCCCCccCC
Q 042446 105 RLFRLEALFLANNSLVGK----IPANLSYCSRLTVLSLGQNKLV----GSIPFEFVFLYKLKGLSLHKNNLTGGISPFLG 176 (445)
Q Consensus 105 ~~~~L~~L~l~~~~i~~~----~p~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 176 (445)
.+++|++|++++|.+.+. ++..+..+++|++|++++|.+. ..++..+.++++|++|++++|.+.+ ++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 445555555555544432 1112234455555555555443 1122223445555555555554442 333444
Q ss_pred CCCCcceEeecccccc---cccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCC
Q 042446 177 NLTFLELVSLSYNSFE---GNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPN 253 (445)
Q Consensus 177 ~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 253 (445)
.+++|++|+++..... ...+..+..+++|+.++++++... .++..+..+++|++|++++|.+.+.....+...+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 4455555555432111 112233444455555555443222 344444555566666666655432222222233556
Q ss_pred ccEEEccCCcCcc-cCcccCcCCCCCCEEECcc-----------CcCcccCccc-ccCCCCCCEEEccCCcCCCCCCCCC
Q 042446 254 LKFFQIDQNFFTG-SIPVSLSNASKLEVIQIAN-----------NSFSGKFSVN-FGGMKNLSHLILQSSNLGSGESDEM 320 (445)
Q Consensus 254 L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~-----------~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~ 320 (445)
|++|++. +.+.+ .++.....+++|++|++++ +.+++..... ...+++|++|+++.+.+++
T Consensus 320 L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~------ 392 (592)
T 3ogk_B 320 LEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN------ 392 (592)
T ss_dssp CCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH------
T ss_pred CCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH------
Confidence 6666655 22221 1222224455566666662 2333222111 2345666666665555443
Q ss_pred ccccccc-CCCCCcEEEcc----CCcceec-----CChhhhhccccCcEEEcccCc--ccccCCccc-cCccCCCeeeCc
Q 042446 321 GFINSLA-NCSKLRVLSFG----RNQFRGV-----LPHSITNLSSQLQVLFLGFNQ--LYGSIPSGI-GNLVNLYLLAME 387 (445)
Q Consensus 321 ~~~~~l~-~~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~ 387 (445)
..+..+. .+++|++|+++ .+.+++. ++..+...+ +|++|++++|. +++..+..+ ..+++|+.|+++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence 1222232 26666666664 3444432 111122233 66666665443 443333333 236677777777
Q ss_pred cCccee-cCChhhhCCCCCCeEEccCCccccc-ccccccCCCCCCeEEccCCccee
Q 042446 388 QNQFIG-TIPQEMGKLLNLQGLDFGGNHFSGK-IPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 388 ~n~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
+|.+++ .++..+..+++|+.|+|++|++++. ++..+..+++|++|++++|+++.
T Consensus 472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp SCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 777654 2344456677777777777776644 23334567777777777777654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=208.08 Aligned_cols=268 Identities=19% Similarity=0.170 Sum_probs=142.4
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
++++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 344322 346666666666666554555666666666666666666555555666666666666666
Q ss_pred c-CCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCC
Q 042446 166 N-LTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLP 244 (445)
Q Consensus 166 ~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 244 (445)
. +....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 151 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------- 151 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-------------------
Confidence 4 44443444555555555555555555444444444555555555555444332233333
Q ss_pred cccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccc
Q 042446 245 SCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFIN 324 (445)
Q Consensus 245 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 324 (445)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... .+.
T Consensus 152 ------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~ 219 (285)
T 1ozn_A 152 ------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL------PTE 219 (285)
T ss_dssp ------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC------CHH
T ss_pred ------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC------CHH
Confidence 45555555555555544444455666666666666666655556666666666666666665542 122
Q ss_pred cccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccC--ccCCCeeeCccC
Q 042446 325 SLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGN--LVNLYLLAMEQN 389 (445)
Q Consensus 325 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n 389 (445)
.+..+++|+.|++++|.+....+.. .....++.+..+.+.+....|..+.. +..++..++.+|
T Consensus 220 ~~~~l~~L~~L~l~~N~~~c~~~~~--~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWVCDCRAR--PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHTTCTTCCEEECCSSCEECSGGGH--HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HcccCcccCEEeccCCCccCCCCcH--HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 4556666666677666665322211 11112333344455555445554432 334444455444
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=210.77 Aligned_cols=223 Identities=20% Similarity=0.192 Sum_probs=170.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCC
Q 042446 62 IALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQN 141 (445)
Q Consensus 62 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~ 141 (445)
+.++.+++.++ .+|..+ .++|++|+++++.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777776 455433 578999999999999777788999999999999999999877899999999999999999
Q ss_pred c-CcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCC
Q 042446 142 K-LVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIP 220 (445)
Q Consensus 142 ~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 220 (445)
. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+.++++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 775667889999999999999999998888889999999999999999997666778999999999999999985555
Q ss_pred ccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcC
Q 042446 221 PSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288 (445)
Q Consensus 221 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (445)
..+..+++|+.|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccC-cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 56767777777777776665333333332 44444444444444433333344444444444444443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-26 Score=218.45 Aligned_cols=245 Identities=23% Similarity=0.206 Sum_probs=178.9
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKL 143 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~ 143 (445)
++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+
T Consensus 59 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 444444554 3454443 6788888888888877778888888888888888888877778888888888888888888
Q ss_pred cccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccc-ccccccCcccCCCCCCCEEEccCCCCcccCCcc
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYN-SFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPS 222 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 222 (445)
+...+..|..+++|++|++++|.+....+..+.++++|+.|++++| .+....+..+.++++|++|++++|.+. .+| .
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~ 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-N 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-C
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-c
Confidence 8666666888888888888888887666667788888888888874 344333346777888888888888877 333 4
Q ss_pred CcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCC
Q 042446 223 ICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNL 302 (445)
Q Consensus 223 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 302 (445)
+..+++|+.|++++|.+.+..+..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+++.....+..+++|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ccccccccEEECcCCcCcccCcccccC-ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 667777777777777776444544443 7777777777777776666677777777777777777776666666777777
Q ss_pred CEEEccCCcCCC
Q 042446 303 SHLILQSSNLGS 314 (445)
Q Consensus 303 ~~L~l~~~~~~~ 314 (445)
+.|++++|.+..
T Consensus 293 ~~L~L~~Np~~C 304 (452)
T 3zyi_A 293 VELHLHHNPWNC 304 (452)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEccCCCcCC
Confidence 777777776544
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=215.76 Aligned_cols=246 Identities=22% Similarity=0.201 Sum_probs=190.7
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc
Q 042446 63 ALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK 142 (445)
Q Consensus 63 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~ 142 (445)
.++.++..++ .+|..+. ++++.|+|++|.++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4555566665 4565554 688999999999997788889999999999999999987777889999999999999999
Q ss_pred CcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccc-cccccCcccCCCCCCCEEEccCCCCcccCCc
Q 042446 143 LVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNS-FEGNIPDSLGQLKELKSLAIGVNNLSGKIPP 221 (445)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 221 (445)
++...+..|..+++|++|++++|.+....+..+..+++|++|++++|. +....+..|.++++|++|++++|.++ .+|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-
Confidence 986666678889999999999998887666778888999999998854 44334446788888888888888887 444
Q ss_pred cCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCC
Q 042446 222 SICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKN 301 (445)
Q Consensus 222 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 301 (445)
.+..+++|+.|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred ccCCCcccCEEECCCCccCccChhhhcc-CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 4667778888888888777444444443 777777777777777766777777777777777777777666666777777
Q ss_pred CCEEEccCCcCCC
Q 042446 302 LSHLILQSSNLGS 314 (445)
Q Consensus 302 L~~L~l~~~~~~~ 314 (445)
|+.|++++|.+..
T Consensus 281 L~~L~L~~Np~~C 293 (440)
T 3zyj_A 281 LERIHLHHNPWNC 293 (440)
T ss_dssp CCEEECCSSCEEC
T ss_pred CCEEEcCCCCccC
Confidence 7777777776644
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=216.63 Aligned_cols=249 Identities=22% Similarity=0.184 Sum_probs=215.3
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 042446 84 FLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLH 163 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (445)
..+.++.++..++ .+|..+. +++++|++++|.+.+..|..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3568888888887 6666443 689999999999998888999999999999999999998888899999999999999
Q ss_pred cccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCC-CCcccCCccCcCCCCCcEEEccCCcCCCC
Q 042446 164 KNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVN-NLSGKIPPSICNLSFLVNFSVSQNQIHGS 242 (445)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 242 (445)
+|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++| .+....+..+..+++|+.|++++|.+. .
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-S
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-c
Confidence 99999777777899999999999999999766678999999999999984 455344456888999999999999987 4
Q ss_pred CCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcc
Q 042446 243 LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGF 322 (445)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 322 (445)
++. +. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|++.....
T Consensus 211 ~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----- 283 (452)
T 3zyi_A 211 MPN-LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH----- 283 (452)
T ss_dssp CCC-CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-----
T ss_pred ccc-cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-----
Confidence 554 33 48999999999999998888999999999999999999998888889999999999999999887443
Q ss_pred cccccCCCCCcEEEccCCccee
Q 042446 323 INSLANCSKLRVLSFGRNQFRG 344 (445)
Q Consensus 323 ~~~l~~~~~L~~L~l~~~~~~~ 344 (445)
..+..+++|+.|++++|.+..
T Consensus 284 -~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 284 -DLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp -TSSTTCTTCCEEECCSSCEEC
T ss_pred -HHhccccCCCEEEccCCCcCC
Confidence 356778999999999998763
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-26 Score=217.46 Aligned_cols=229 Identities=23% Similarity=0.220 Sum_probs=174.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..++.++++++.+.+..+..+..+++|++|+|++|.+....+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45677888888887766677888888888888888887666677888888888888888888655667788888888888
Q ss_pred cCCcCcccCCccccCCCCCCEEeccccc-CCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNN-LTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG 217 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 217 (445)
++|.+....+..|.++++|++|++++|+ +....+..+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 8888876666677888888888888754 33334446777888888888888877 344 46777888888888888887
Q ss_pred cCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcc
Q 042446 218 KIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSG 290 (445)
Q Consensus 218 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (445)
..+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 7777888888888888888887744444444 37888888888888886666667778888888888887643
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-29 Score=253.26 Aligned_cols=352 Identities=13% Similarity=0.088 Sum_probs=254.5
Q ss_pred CCCCCCEEECCCCcccccCCccccC-CCC-CCEEECCCCcC-CC-CCCccCcCCCCCCEEEccCCcCccc----CCcccc
Q 042446 81 NLSFLREINLMDNTIQGEIPPEFGR-LFR-LEALFLANNSL-VG-KIPANLSYCSRLTVLSLGQNKLVGS----IPFEFV 152 (445)
Q Consensus 81 ~l~~L~~L~L~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~i-~~-~~p~~l~~l~~L~~L~l~~~~~~~~----~~~~~~ 152 (445)
.+++|++|+|+++.+++..+..+.. ++. |++|++++|.. .. .++.....+++|++|++++|.+.+. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6788999999998887665555555 344 99999988762 11 1222334788999999999987644 223446
Q ss_pred CCCCCCEEecccccCCC----CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCc---ccCCccCcC
Q 042446 153 FLYKLKGLSLHKNNLTG----GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS---GKIPPSICN 225 (445)
Q Consensus 153 ~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~l~~ 225 (445)
.+++|++|++++|.+.+ .++..+.++++|++|++++|.+.+ ++..+.++++|++|+++..... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 78899999999888762 333445678899999999988874 5677888899999999753322 234456677
Q ss_pred CCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCc-ccCcCCCCCCEEECccCcCccc-CcccccCCCCCC
Q 042446 226 LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIP-VSLSNASKLEVIQIANNSFSGK-FSVNFGGMKNLS 303 (445)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~ 303 (445)
+++|+.+.++.+.. +.++..+.. +++|++|++++|.+++... ..+..+++|++|+++ +.+.+. .......+++|+
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~-~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPF-AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGG-GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred cccccccCccccch-hHHHHHHhh-cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 88999999987643 356665554 8999999999999765433 346889999999999 444333 333446789999
Q ss_pred EEEccC-----------CcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcc----cCccc
Q 042446 304 HLILQS-----------SNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLG----FNQLY 368 (445)
Q Consensus 304 ~L~l~~-----------~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~~ 368 (445)
+|++++ +.++.. ++......+++|++|+++.+.+++..+..+....++|++|+++ .+.++
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQR-----GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHH-----HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred EEEeecCccccccccccCccCHH-----HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 999993 333321 2233345689999999998888877777776634499999997 55676
Q ss_pred cc-----CCccccCccCCCeeeCccCc--ceecCChhhh-CCCCCCeEEccCCccccc-ccccccCCCCCCeEEccCCcc
Q 042446 369 GS-----IPSGIGNLVNLYLLAMEQNQ--FIGTIPQEMG-KLLNLQGLDFGGNHFSGK-IPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 369 ~~-----~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~-~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~l~l~~n~~ 439 (445)
+. ++..+..+++|+.|+++.|. +++..+..+. .+++|+.|++++|++++. ++..+..+++|++|++++|++
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 42 33346679999999998654 5544444443 589999999999999864 455668899999999999997
Q ss_pred ee
Q 042446 440 SG 441 (445)
Q Consensus 440 ~~ 441 (445)
+.
T Consensus 501 ~~ 502 (592)
T 3ogk_B 501 SE 502 (592)
T ss_dssp BH
T ss_pred cH
Confidence 64
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-25 Score=219.31 Aligned_cols=268 Identities=26% Similarity=0.284 Sum_probs=217.2
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEee
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSL 186 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 186 (445)
.++++|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46899999999999 7777665 89999999999998 5665 5789999999999988 4554 6789999999
Q ss_pred cccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc
Q 042446 187 SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG 266 (445)
Q Consensus 187 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (445)
++|.+.+ ++. .+++|++|++++|.++ .+|.. +++|++|++++|.+. .++. .+++|+.|++++|.+++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC
Confidence 9999884 444 5789999999999998 56654 488999999999887 4543 36789999999999885
Q ss_pred cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC
Q 042446 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346 (445)
Q Consensus 267 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 346 (445)
+| ..+++|+.|++++|.+++... .+++|+.|++++|.+...+ ..+++|+.|++++|.+++ +
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~----------~~~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP----------ALPSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC----------CCCTTCCEEECCSSCCSC-C
T ss_pred -Cc---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccC----------CCCCCCCEEEccCCccCc-C
Confidence 44 457899999999999875322 3578999999999887632 124789999999998874 5
Q ss_pred ChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCC
Q 042446 347 PHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNL 426 (445)
Q Consensus 347 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l 426 (445)
| ..+++|++|++++|.++ .+|. .+++|+.|++++|.+. .+|..+..+++|+.|+|++|++++..+..+..+
T Consensus 237 p----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 237 P----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp C----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred C----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 5 22348999999999988 4555 5788999999999988 788889999999999999999988777766543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-25 Score=217.97 Aligned_cols=269 Identities=24% Similarity=0.269 Sum_probs=222.2
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSL 162 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (445)
..+++|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 34899999999998 7777665 89999999999998 5665 5799999999999998 5665 6799999999
Q ss_pred ccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCC
Q 042446 163 HKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGS 242 (445)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 242 (445)
++|.+.+ ++. .+++|+.|++++|.++. +|.. +++|++|++++|.++ .+|. ..++|+.|++++|.+. .
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~-~ 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLT-S 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-C
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCC-C
Confidence 9999885 443 57899999999999884 5553 489999999999998 4554 3478999999999998 5
Q ss_pred CCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcc
Q 042446 243 LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGF 322 (445)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 322 (445)
+| ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++... . .+++|++|++++|.+...+
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~lp------ 237 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLP------ 237 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSCCC------
T ss_pred Cc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCcCC------
Confidence 66 337899999999999985 4432 478999999999987433 2 3589999999999887632
Q ss_pred cccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCC
Q 042446 323 INSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKL 402 (445)
Q Consensus 323 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 402 (445)
..+++|+.|++++|.++ .+|. .+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+
T Consensus 238 ----~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 238 ----VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ----CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred ----CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 45689999999999998 5665 3348999999999999 788899999999999999999998877766544
Q ss_pred C
Q 042446 403 L 403 (445)
Q Consensus 403 ~ 403 (445)
+
T Consensus 308 ~ 308 (622)
T 3g06_A 308 T 308 (622)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-28 Score=224.76 Aligned_cols=265 Identities=17% Similarity=0.158 Sum_probs=147.0
Q ss_pred CCCCCCCCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCccc-ccCCcccc-------CCCCC
Q 042446 38 NSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQ-GEIPPEFG-------RLFRL 109 (445)
Q Consensus 38 ~~w~~~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~-------~~~~L 109 (445)
+.|.....|+.+..+......++++.++++++.+ .+|..+... |++|+++++.+. ..++..+. ++++|
T Consensus 22 ~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L 97 (312)
T 1wwl_A 22 PDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97 (312)
T ss_dssp CCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCC
T ss_pred cchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCc
Confidence 4555544555554443332234566666666666 455544433 677777777763 34555444 67777
Q ss_pred CEEECCCCcCCCCCCccC--cCCCCCCEEEccCCcCcccCCccccCC-----CCCCEEecccccCCCCCCccCCCCCCcc
Q 042446 110 EALFLANNSLVGKIPANL--SYCSRLTVLSLGQNKLVGSIPFEFVFL-----YKLKGLSLHKNNLTGGISPFLGNLTFLE 182 (445)
Q Consensus 110 ~~L~l~~~~i~~~~p~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 182 (445)
++|++++|.+.+..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..+++|+
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 777777777776666665 6777777777777777744 5555555 6777777777777666656666777777
Q ss_pred eEeecccccccc--cCccc--CCCCCCCEEEccCCCCcc--cCC-ccCcCCCCCcEEEccCCcCCCCCCcccccCCCCcc
Q 042446 183 LVSLSYNSFEGN--IPDSL--GQLKELKSLAIGVNNLSG--KIP-PSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255 (445)
Q Consensus 183 ~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 255 (445)
+|++++|.+.+. .+..+ .++++|++|++++|.+++ .++ ..+..+++|+.|++++|.+.+..+......+++|+
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 777777665432 12222 556666666666666551 111 22234455555555555555433222222244555
Q ss_pred EEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcC
Q 042446 256 FFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNL 312 (445)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 312 (445)
+|++++|.++ .+|..+. ++|++|++++|++++. +. +..+++|++|++++|.+
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence 5555555544 3333333 4455555555544433 22 44444444444444443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-27 Score=217.22 Aligned_cols=243 Identities=19% Similarity=0.171 Sum_probs=139.2
Q ss_pred CCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEcc
Q 042446 156 KLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVS 235 (445)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 235 (445)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECC
Confidence 34444444444433333333444444444444444432221 4444555555555554441 11 22455555555
Q ss_pred CCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccc-cCCCCCCEEEccCCcCCC
Q 042446 236 QNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNF-GGMKNLSHLILQSSNLGS 314 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~ 314 (445)
+|.+.+. +. ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+..
T Consensus 108 ~n~l~~~-~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 108 NNNISRV-SC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp SSCCSEE-EE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCccCCc-Cc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 5554421 11 124566666666666665555566667777777777777766555444 356777777777777655
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcce-e
Q 042446 315 GESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI-G 393 (445)
Q Consensus 315 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~ 393 (445)
.. ....+++|++|++++|.+++ ++..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|.+. +
T Consensus 184 ~~--------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~-~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 184 VK--------GQVVFAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp EE--------CCCCCTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred cc--------cccccccCCEEECCCCcCCc-chhhhcccC-cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence 31 22346777777777777763 444455555 7777777777777 45666777777777887777776 5
Q ss_pred cCChhhhCCCCCCeEEccCCc-cccccc
Q 042446 394 TIPQEMGKLLNLQGLDFGGNH-FSGKIP 420 (445)
Q Consensus 394 ~~~~~~~~~~~L~~L~l~~n~-i~~~~~ 420 (445)
..+..+..+++|+.++++++. +++..+
T Consensus 253 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CHHHHHhccccceEEECCCchhccCCch
Confidence 566777777777777777543 443333
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-27 Score=215.15 Aligned_cols=259 Identities=16% Similarity=0.152 Sum_probs=122.2
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccC
Q 042446 61 VIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQ 140 (445)
Q Consensus 61 v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~ 140 (445)
+...+++.+.+..........+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3334444444433333333344555555555555554444455555555555555555543222 45555555555555
Q ss_pred CcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCC
Q 042446 141 NKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIP 220 (445)
Q Consensus 141 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 220 (445)
|.+++. ...++|++|++++|.+ .+..+. .+++|++|++++|.+++..+
T Consensus 90 n~l~~l-----~~~~~L~~L~l~~n~l------------------------~~~~~~---~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 90 NYVQEL-----LVGPSIETLHAANNNI------------------------SRVSCS---RGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SEEEEE-----EECTTCCEEECCSSCC------------------------SEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred Cccccc-----cCCCCcCEEECCCCcc------------------------CCcCcc---ccCCCCEEECCCCCCCCccc
Confidence 554421 1224444444444444 322211 13445555555555543333
Q ss_pred ccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCC
Q 042446 221 PSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMK 300 (445)
Q Consensus 221 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 300 (445)
..+..+++|+.|++++|.+.+..+..+...+++|++|++++|.+++. + ....+++|++|++++|.+++..+ .+..++
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~ 214 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAA 214 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccC
Confidence 34444455555555555544333333322245555555555555432 1 12235556666666665553322 245555
Q ss_pred CCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcce-ecCChhhhhccccCcEEEccc
Q 042446 301 NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR-GVLPHSITNLSSQLQVLFLGF 364 (445)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~ 364 (445)
+|++|++++|.+.. ++..+..+++|+.|++++|.+. +.++..+..++ +|+++++++
T Consensus 215 ~L~~L~L~~N~l~~-------l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~-~L~~l~l~~ 271 (317)
T 3o53_A 215 GVTWISLRNNKLVL-------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQT 271 (317)
T ss_dssp TCSEEECTTSCCCE-------ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH-HHHHHHHHH
T ss_pred cccEEECcCCcccc-------hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc-cceEEECCC
Confidence 55555555555543 2223445555555555555554 33344444443 455555553
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=194.37 Aligned_cols=193 Identities=25% Similarity=0.300 Sum_probs=141.0
Q ss_pred CCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCC
Q 042446 44 RHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123 (445)
Q Consensus 44 ~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 123 (445)
.++|.|.|+.|... ...+.++++++.++ .+|..+. +++++|++++|.++...+..+..+++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 46899999888653 34668999999887 4665554 67899999999988666667888999999999999888655
Q ss_pred CccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCC
Q 042446 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLK 203 (445)
Q Consensus 124 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 203 (445)
+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55668888999999998888765556677788888888888887766666667777777777777777654444566667
Q ss_pred CCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC
Q 042446 204 ELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
+|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 7777777776666444444555555555555555554
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-28 Score=247.75 Aligned_cols=369 Identities=13% Similarity=0.092 Sum_probs=163.0
Q ss_pred cEEEEEcCCCCCccccccccc-CCCCCCEEECCCC-ccccc-CCccccCCCCCCEEECCCCcCCCCCCccC----cCCCC
Q 042446 60 RVIALDLMSKALSGSLSPHIG-NLSFLREINLMDN-TIQGE-IPPEFGRLFRLEALFLANNSLVGKIPANL----SYCSR 132 (445)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~l~-~l~~L~~L~L~~~-~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~p~~l----~~l~~ 132 (445)
++++++++++.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 445555555544443333333 3455555555555 22211 22222345555555555555443222222 23445
Q ss_pred CCEEEccCCc--Cccc-CCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccc-------cccccCcccCCC
Q 042446 133 LTVLSLGQNK--LVGS-IPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNS-------FEGNIPDSLGQL 202 (445)
Q Consensus 133 L~~L~l~~~~--~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~l~~l 202 (445)
|++|++++|. +... ++..+..+++|++|++++|.....++..+..+++|++|++..+. +. .++..+.++
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~ 264 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGC 264 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTC
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcC
Confidence 5555555543 1100 11111234555555555541111133333344445554433221 11 111123333
Q ss_pred CCCCEE-EccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccC-cccCcCCCCCCE
Q 042446 203 KELKSL-AIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSI-PVSLSNASKLEV 280 (445)
Q Consensus 203 ~~L~~L-~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~ 280 (445)
++|+.+ .+.+... ..++..+..+++|++|++++|.+.+.....+...+++|++|++.+| +++.. +.....+++|++
T Consensus 265 ~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 265 KELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 333333 1211111 1222223345666666666665443222222233666666666665 32211 111223566666
Q ss_pred EECcc---------CcCcccCccccc-CCCCCCEEEccCCcCCCCCCCCCcccccc-cCCCCCcEEEcc--C----Ccce
Q 042446 281 IQIAN---------NSFSGKFSVNFG-GMKNLSHLILQSSNLGSGESDEMGFINSL-ANCSKLRVLSFG--R----NQFR 343 (445)
Q Consensus 281 L~l~~---------~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~--~----~~~~ 343 (445)
|++.+ +.+++.....+. .+++|++|.+..+.++. .....+ ..+++|++|+++ + +.++
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN------AALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH------HHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH------HHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 66622 233332222222 35666666555555543 111122 245666666666 2 2333
Q ss_pred ecC-----ChhhhhccccCcEEEcccCcccccCCccccC-ccCCCeeeCccCcceecCChhh-hCCCCCCeEEccCCccc
Q 042446 344 GVL-----PHSITNLSSQLQVLFLGFNQLYGSIPSGIGN-LVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 344 ~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i~ 416 (445)
+.. +..+...+ +|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|+|++|+++
T Consensus 417 ~~~~~~~~~~l~~~~~-~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCK-DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CCCTHHHHHHHHHHCT-TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred CCchhhHHHHHHhhCC-CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 110 11122223 666666655 444333333333 5667777777666654333333 45667777777777765
Q ss_pred ccccc-cccCCCCCCeEEccCCcc
Q 042446 417 GKIPS-TLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 417 ~~~~~-~l~~l~~L~~l~l~~n~~ 439 (445)
+.... .+..+++|++|++++|++
T Consensus 495 ~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 495 DKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHHhCCCCCEEeeeCCCC
Confidence 44332 334466777777777765
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-26 Score=213.06 Aligned_cols=251 Identities=17% Similarity=0.171 Sum_probs=142.6
Q ss_pred CCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccc-cccCcccC-------CCCCCCEEEccCCCCcccCCccC-
Q 042446 153 FLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFE-GNIPDSLG-------QLKELKSLAIGVNNLSGKIPPSI- 223 (445)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~l- 223 (445)
..++|+.+++++|.+ .+|..+... |+.|++++|.+. ..++..+. ++++|++|++++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344555666666655 344433322 666666666653 22333332 46677777777777766666654
Q ss_pred -cCCCCCcEEEccCCcCCCCCCcccccC----CCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCccc--Ccccc
Q 042446 224 -CNLSFLVNFSVSQNQIHGSLPSCLGLN----FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGK--FSVNF 296 (445)
Q Consensus 224 -~~l~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l 296 (445)
..+++|++|++++|.+.+. |..+..- +++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5666777777777766643 4433320 15566666666665554445555556666666665554322 11111
Q ss_pred cCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCccee--cCChhhhhccccCcEEEcccCcccccCC-c
Q 042446 297 GGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG--VLPHSITNLSSQLQVLFLGFNQLYGSIP-S 373 (445)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~ 373 (445)
.+..+++|++|++++|.+++ .++..+....++|++|++++|.+++..| .
T Consensus 196 ----------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 196 ----------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp ----------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred ----------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 11444555555555555541 1122222122367777777776665443 3
Q ss_pred cccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 374 GIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 374 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
.+..+++|+.|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 3445677777777777776 6666554 6778888888887744 55 7777888888888887765
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-27 Score=238.55 Aligned_cols=351 Identities=13% Similarity=0.110 Sum_probs=225.0
Q ss_pred CCCCCCEEECCCCcccccCCcccc-CCCCCCEEECCCC-cCCCC-CCccCcCCCCCCEEEccCCcCcccCCccc----cC
Q 042446 81 NLSFLREINLMDNTIQGEIPPEFG-RLFRLEALFLANN-SLVGK-IPANLSYCSRLTVLSLGQNKLVGSIPFEF----VF 153 (445)
Q Consensus 81 ~l~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~i~~~-~p~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~ 153 (445)
.+++|++|+++++.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 466777777777776655554554 5677777777777 33321 33334467777777777776654333222 35
Q ss_pred CCCCCEEeccccc--CCC-CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCC-------CcccCCccC
Q 042446 154 LYKLKGLSLHKNN--LTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNN-------LSGKIPPSI 223 (445)
Q Consensus 154 l~~L~~L~l~~~~--~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-------~~~~~~~~l 223 (445)
+++|++|++++|. +.. .+......+++|++|++++|.....++..+.++++|++|+++.+. +. .++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH
Confidence 5677777777765 111 111112345777777777763222355556667777777755432 22 233355
Q ss_pred cCCCCCcEE-EccCCcCCCCCCcccccCCCCccEEEccCCcCcccCc-ccCcCCCCCCEEECccCcCcccCccc-ccCCC
Q 042446 224 CNLSFLVNF-SVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIP-VSLSNASKLEVIQIANNSFSGKFSVN-FGGMK 300 (445)
Q Consensus 224 ~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~ 300 (445)
..+++|+.+ .+..... +.++.... .+++|++|++++|.+++... ..+..+++|++|++++| +.+..... ...++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~-~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYLPAVYS-VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGGGGGHH-HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred hcCCCcccccCCcccch-hhHHHHHH-hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 677777777 3332221 13333333 37899999999998765332 33568899999999998 54333332 34589
Q ss_pred CCCEEEccCC---------cCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcc--c----C
Q 042446 301 NLSHLILQSS---------NLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLG--F----N 365 (445)
Q Consensus 301 ~L~~L~l~~~---------~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~ 365 (445)
+|++|+++++ .++.. .+......+++|++|.+.++.+++.....+....++|++|+++ + +
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~-----~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQ-----GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHH-----HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred CCCEEEEecCcccccccCCCCCHH-----HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 9999999553 22221 1222234589999999988888866666665433499999999 3 4
Q ss_pred cccc-----cCCccccCccCCCeeeCccCcceecCChhhhC-CCCCCeEEccCCcccccccccc-cCCCCCCeEEccCCc
Q 042446 366 QLYG-----SIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGK-LLNLQGLDFGGNHFSGKIPSTL-GNLSSLSEIVLSNNN 438 (445)
Q Consensus 366 ~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~l~l~~n~ 438 (445)
.+++ .++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|+
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 5552 1222356789999999987 555455555554 8999999999999987666555 679999999999999
Q ss_pred cee
Q 042446 439 LSG 441 (445)
Q Consensus 439 ~~~ 441 (445)
++.
T Consensus 493 ~~~ 495 (594)
T 2p1m_B 493 FGD 495 (594)
T ss_dssp CCH
T ss_pred CcH
Confidence 853
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=187.94 Aligned_cols=211 Identities=17% Similarity=0.144 Sum_probs=142.1
Q ss_pred ccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCC
Q 042446 75 LSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFL 154 (445)
Q Consensus 75 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 154 (445)
+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 444443 568889998888886666678888888889888888886666678888888888888888886666778888
Q ss_pred CCCCEEecccccCCCCCCccCCCCCCcceEeecccccccc-cCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCc---
Q 042446 155 YKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGN-IPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLV--- 230 (445)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--- 230 (445)
++|++|++++|.+.+..+..+..+++|++|++++|.+... +|..+.++++|++|++++|.+++..+..+..++.|+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 8888888888887766665677778888888888777642 466777777777777777777655555555444444
Q ss_pred -EEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCc
Q 042446 231 -NFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFS 289 (445)
Q Consensus 231 -~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (445)
.+++++|.+. .++..... ..+|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 180 l~L~ls~n~l~-~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 180 LSLDLSLNPMN-FIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEEECCSSCCC-EECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred eeeecCCCccc-ccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 5666666554 22222222 234555555555554333333444555555555555443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=186.85 Aligned_cols=224 Identities=19% Similarity=0.179 Sum_probs=151.9
Q ss_pred EeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCc
Q 042446 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNF 263 (445)
Q Consensus 184 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (445)
++..+..+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHcc-CCcCCCEEECCCCc
Confidence 344444444 4555443 5788888888888866666778888888888888877633333343 37788888888888
Q ss_pred CcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcce
Q 042446 264 FTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR 343 (445)
Q Consensus 264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 343 (445)
+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+... .++..+..+++|++|++++|+++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----KLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-----cCchhhccCCCCCEEECCCCCCC
Confidence 8776667777888888888888877766666677778888888888777553 23456677777888888877777
Q ss_pred ecCChhhhhccccCc----EEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccc
Q 042446 344 GVLPHSITNLSSQLQ----VLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 344 ~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
+..+..+..+. +|+ +|++++|.+++..+. .....+|+.|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 163 ~~~~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 163 SIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp EECGGGGHHHH-TCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cCCHHHhhhhh-hccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 55555555544 555 677777777643333 33334677777777777644445566677777777777776643
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-25 Score=213.58 Aligned_cols=217 Identities=18% Similarity=0.151 Sum_probs=120.8
Q ss_pred CCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 042446 81 NLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGL 160 (445)
Q Consensus 81 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (445)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..| +..+++|++|++++|.+++. + ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEE
Confidence 34478888888888776666777778888888888887775444 77777788888887777632 2 22667777
Q ss_pred ecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCc-CCCCCcEEEccCCcC
Q 042446 161 SLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQNQI 239 (445)
Q Consensus 161 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~~~~ 239 (445)
++++|.+.+..+. .+++|+.|++++|.+++..+..++.+++|++|++++|.+.+..|..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 7777766644332 245566666666666655555555556666666666665544444443 455555555555554
Q ss_pred CCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcC
Q 042446 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNL 312 (445)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 312 (445)
.+. +... .+++|+.|++++|.+++. |..+..+++|+.|++++|.+++ .+..+..+++|+.|++++|.+
T Consensus 182 ~~~-~~~~--~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 182 YDV-KGQV--VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEE-ECCC--CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred ccc-cccc--cCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 421 1111 144444444444444432 2224444444444444444432 222333344444444444433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-24 Score=207.09 Aligned_cols=238 Identities=18% Similarity=0.205 Sum_probs=170.8
Q ss_pred CCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCcc
Q 042446 176 GNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255 (445)
Q Consensus 176 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 255 (445)
..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+ +..+++|+.|++++|.+. .++ . .++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~----~-~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----V-GPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE----E-CTTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC----C-CCCcC
Confidence 345578888888888887666788888888888888888875444 777888888888888775 222 1 47788
Q ss_pred EEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccccccc-CCCCCcE
Q 042446 256 FFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLA-NCSKLRV 334 (445)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~ 334 (445)
.|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+... .+..+. .+++|+.
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV------NFAELAASSDTLEH 173 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE------EGGGGGGGTTTCCE
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc------ChHHHhhhCCcccE
Confidence 888888887754433 356788888888888777777777788888888888877662 233333 5778888
Q ss_pred EEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCc
Q 042446 335 LSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNH 414 (445)
Q Consensus 335 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 414 (445)
|++++|.+++..+. ..++ +|++|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 174 L~Ls~N~l~~~~~~--~~l~-~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 174 LNLQYNFIYDVKGQ--VVFA-KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EECTTSCCCEEECC--CCCT-TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred EecCCCcccccccc--ccCC-CCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCC
Confidence 88888877654222 2233 78888888888774 4444777778888888888777 466667777788888888887
Q ss_pred cc-ccccccccCCCCCCeEEcc
Q 042446 415 FS-GKIPSTLGNLSSLSEIVLS 435 (445)
Q Consensus 415 i~-~~~~~~l~~l~~L~~l~l~ 435 (445)
+. +.+|..+..++.|+.++++
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecc
Confidence 76 5566667777777776664
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-22 Score=177.55 Aligned_cols=203 Identities=20% Similarity=0.206 Sum_probs=116.9
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 042446 84 FLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLH 163 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (445)
..+.++++++.++ .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+....+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3567777777766 4454332 467777777777765555566677777777777776664444445666666666666
Q ss_pred cccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCC
Q 042446 164 KNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243 (445)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 243 (445)
+|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~---------- 163 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR---------- 163 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE----------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE----------
Confidence 6666654444555566666666666655544444455555555555555555533333344444454444
Q ss_pred CcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCC
Q 042446 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGS 314 (445)
Q Consensus 244 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 314 (445)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 164 ---------------L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 164 ---------------LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ---------------CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ---------------ecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 44444444333445555566666666665554444455556666666666665543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=181.04 Aligned_cols=203 Identities=19% Similarity=0.177 Sum_probs=118.5
Q ss_pred cCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCC
Q 042446 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKL 278 (445)
Q Consensus 199 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 278 (445)
+++++++++++++++.++ .+|..+. +.++.|++++|.+.+..+..+.. +++|++|++++|.+++..+ ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTT-CTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhc-CCCCCEEECCCCccCcccC--CCCCCcC
Confidence 445667777777777766 4554443 46667777777665333333333 6666677776666664322 2556666
Q ss_pred CEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCc
Q 042446 279 EVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQ 358 (445)
Q Consensus 279 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 358 (445)
++|++++|.+. ..+..+..+++|++|++++|++..... ..+..+++|++|++++|++++..+..+..++ +|+
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~ 151 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL------GALRGLGELQELYLKGNELKTLPPGLLTPTP-KLE 151 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS------STTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCC
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH------HHHcCCCCCCEEECCCCCCCccChhhccccc-CCC
Confidence 66666666665 334455666666666666666655321 2455566666666666666533333333443 666
Q ss_pred EEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 359 VLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 359 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
+|++++|++++..+..+..+++|+.|++++|++. .+|..+...++|+.+++++|++.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 6666666666433334455666666666666665 55555555666666666666554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-25 Score=208.44 Aligned_cols=243 Identities=19% Similarity=0.234 Sum_probs=113.6
Q ss_pred CCccCCCCCCcceEeecccccccc----cCcccCCCCCCCEEEccCCCC---cccCCccC-------cCCCCCcEEEccC
Q 042446 171 ISPFLGNLTFLELVSLSYNSFEGN----IPDSLGQLKELKSLAIGVNNL---SGKIPPSI-------CNLSFLVNFSVSQ 236 (445)
Q Consensus 171 ~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~---~~~~~~~l-------~~l~~L~~L~l~~ 236 (445)
++..+..+++|++|++++|.+... ++..+.++++|++|++++|.+ .+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 444555666777777777766643 223355667777777766433 22333333 4556666666666
Q ss_pred CcCCCC----CCcccccCCCCccEEEccCCcCcccCccc----CcCC---------CCCCEEECccCcCccc-Cc---cc
Q 042446 237 NQIHGS----LPSCLGLNFPNLKFFQIDQNFFTGSIPVS----LSNA---------SKLEVIQIANNSFSGK-FS---VN 295 (445)
Q Consensus 237 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~---------~~L~~L~l~~~~~~~~-~~---~~ 295 (445)
|.+.+. ++..+.. +++|++|++++|.+++..+.. +..+ ++|++|++++|.+++. .+ ..
T Consensus 104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 665531 3333333 555555555555554322222 2222 5555555555555421 11 23
Q ss_pred ccCCCCCCEEEccCCcCCCCCCCCCcccc-cccCCCCCcEEEccCCcce----ecCChhhhhccccCcEEEcccCccccc
Q 042446 296 FGGMKNLSHLILQSSNLGSGESDEMGFIN-SLANCSKLRVLSFGRNQFR----GVLPHSITNLSSQLQVLFLGFNQLYGS 370 (445)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~ 370 (445)
+..+++|++|++++|.+...... .+.. .+..+++|++|++++|.++ ..++..+...+ +|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~--~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIE--HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHH--HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEEECTTCCCCHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHH--HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-CcCEEECCCCCCchh
Confidence 34455555555555544321000 0111 3444555555555555543 22333333333 455555555554432
Q ss_pred ----CCcccc--CccCCCeeeCccCccee----cCChhh-hCCCCCCeEEccCCcccc
Q 042446 371 ----IPSGIG--NLVNLYLLAMEQNQFIG----TIPQEM-GKLLNLQGLDFGGNHFSG 417 (445)
Q Consensus 371 ----~~~~~~--~~~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~l~~n~i~~ 417 (445)
++..+. .+++|+.|++++|.+.+ .++..+ .++++|+.|++++|++++
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 222331 14445555555554443 234333 334455555555555443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=178.93 Aligned_cols=203 Identities=22% Similarity=0.192 Sum_probs=105.0
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.++++++.+.. ...+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 445555555555542 1235555556666666555542 2 24555555666666655555444444555555555555
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 55555544444455555555555555555544444445555555555555555544444445555555555555555544
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCc
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLS 273 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 273 (445)
.+..+..+++|+.|++++|.+.+ .++.|+.+++..|.+.+.+|.+++
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCccc
Confidence 44444555555555555554431 133444444444444444444443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=177.19 Aligned_cols=202 Identities=23% Similarity=0.261 Sum_probs=100.5
Q ss_pred ccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 042446 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLK 158 (445)
Q Consensus 79 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (445)
+.++++++.++++++.++ .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 344555555555555555 3333322 455555555555554444555555555555555555542221 14455555
Q ss_pred EEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCc
Q 042446 159 GLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQ 238 (445)
Q Consensus 159 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 238 (445)
+|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5555555554 344444555555555555555554333445555555555555555553333344445555555555555
Q ss_pred CCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcC
Q 042446 239 IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288 (445)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (445)
+. .++......+++|++|++++|.++ .+|..+...++|+.+++++|.+
T Consensus 160 l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 44 333333223445555555555444 3344444444555555555544
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-24 Score=201.24 Aligned_cols=257 Identities=16% Similarity=0.160 Sum_probs=174.7
Q ss_pred EecccccCCCCCCccCCCCCCcceEeecccccccccC----cccCCCC-CCCEEEccCCCCcccCCccCcCC-----CCC
Q 042446 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIP----DSLGQLK-ELKSLAIGVNNLSGKIPPSICNL-----SFL 229 (445)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~L 229 (445)
+.++.|.+.+.++..+...++|++|++++|.+....+ ..+.+++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677788877777766666679999999888875554 5677777 88899998888886666666554 888
Q ss_pred cEEEccCCcCCCCCCccccc---CC-CCccEEEccCCcCcccCcccC----cC-CCCCCEEECccCcCcccCcc----cc
Q 042446 230 VNFSVSQNQIHGSLPSCLGL---NF-PNLKFFQIDQNFFTGSIPVSL----SN-ASKLEVIQIANNSFSGKFSV----NF 296 (445)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~---~~-~~L~~L~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~~~----~l 296 (445)
++|++++|.+.+..+..+.. .. ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888887555443322 13 788888888888876554333 33 35888888888888754433 33
Q ss_pred cCCC-CCCEEEccCCcCCCCCCCCCcccccccCC-CCCcEEEccCCcceec----CChhhhhccccCcEEEcccCccccc
Q 042446 297 GGMK-NLSHLILQSSNLGSGESDEMGFINSLANC-SKLRVLSFGRNQFRGV----LPHSITNLSSQLQVLFLGFNQLYGS 370 (445)
Q Consensus 297 ~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~ 370 (445)
..++ +|++|++++|.+...... .+...+..+ ++|++|++++|.+.+. ++..+...+++|++|++++|.+++.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCA--ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred hcCCccccEeeecCCCCchhhHH--HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 4554 888888888887653321 223344555 4888888888887753 3334444344788888888887754
Q ss_pred CC----ccccCccCCCeeeCccCccee-------cCChhhhCCCCCCeEEccCCccccc
Q 042446 371 IP----SGIGNLVNLYLLAMEQNQFIG-------TIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 371 ~~----~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
.+ ..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|++.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33 234556788888888887332 2334556677788888888887755
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-24 Score=196.77 Aligned_cols=231 Identities=15% Similarity=0.146 Sum_probs=113.5
Q ss_pred CCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCC-CCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEE
Q 042446 203 KELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGS-LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVI 281 (445)
Q Consensus 203 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 281 (445)
+.++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+. .+++|++|++++|.+++..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILS-QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHT-TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHh-hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 4455555555554433222 33455555555555554422 233232 25555555555555554445555555666666
Q ss_pred ECccC-cCccc-CcccccCCCCCCEEEccCC-cCCCCCCCCCcccccccCCC-CCcEEEccCC--cce-ecCChhhhhcc
Q 042446 282 QIANN-SFSGK-FSVNFGGMKNLSHLILQSS-NLGSGESDEMGFINSLANCS-KLRVLSFGRN--QFR-GVLPHSITNLS 354 (445)
Q Consensus 282 ~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~--~~~-~~~~~~~~~~~ 354 (445)
++++| .+++. .+..+..+++|++|++++| .+... .++..+..++ +|++|++++| .++ +.++..+..++
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 66665 34432 3333455566666666665 44331 1233445555 6666666665 233 12333333443
Q ss_pred ccCcEEEcccCc-ccccCCccccCccCCCeeeCccCc-ceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeE
Q 042446 355 SQLQVLFLGFNQ-LYGSIPSGIGNLVNLYLLAMEQNQ-FIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEI 432 (445)
Q Consensus 355 ~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l 432 (445)
+|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| +.+.....+. ..++.|
T Consensus 223 -~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L 298 (336)
T 2ast_B 223 -NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHL 298 (336)
T ss_dssp -TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTS
T ss_pred -CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcce
Confidence 56666666665 444445555556666666666663 22111224555666666666666 3322211121 124444
Q ss_pred EccCCcceecCC
Q 042446 433 VLSNNNLSGVIP 444 (445)
Q Consensus 433 ~l~~n~~~~~~p 444 (445)
++++|++++..|
T Consensus 299 ~l~~n~l~~~~~ 310 (336)
T 2ast_B 299 QINCSHFTTIAR 310 (336)
T ss_dssp EESCCCSCCTTC
T ss_pred EEecccCccccC
Confidence 566666666555
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-22 Score=178.89 Aligned_cols=180 Identities=23% Similarity=0.236 Sum_probs=97.6
Q ss_pred ccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 042446 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLK 158 (445)
Q Consensus 79 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (445)
...+++|+.|++.++.++ .++ .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 344566666666666655 222 35566666666666666653 2 3455666666666666666644444456666666
Q ss_pred EEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCc
Q 042446 159 GLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQ 238 (445)
Q Consensus 159 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 238 (445)
+|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 66666666655444445555666666666665554444445555555555555555554334444455555555555555
Q ss_pred CCCCCCcccccCCCCccEEEccCCc
Q 042446 239 IHGSLPSCLGLNFPNLKFFQIDQNF 263 (445)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (445)
+.+..+..+. .+++|+.|++++|.
T Consensus 193 l~~~~~~~~~-~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 193 LKSVPDGVFD-RLTSLQYIWLHDNP 216 (272)
T ss_dssp CSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred CCccCHHHHh-CCcCCCEEEccCCC
Confidence 5432222222 24444444444443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.9e-22 Score=174.46 Aligned_cols=191 Identities=23% Similarity=0.213 Sum_probs=159.2
Q ss_pred CCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCC
Q 042446 45 HFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIP 124 (445)
Q Consensus 45 ~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p 124 (445)
.|+.|.|..|... .+.++++++.++ .+|..+. +.++.|++++|.+.+..+..+.++++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~~---~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNEG---KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEGG---GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCCC---CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 4778989999542 446889999887 5666554 689999999999998778889999999999999999998778
Q ss_pred ccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCC
Q 042446 125 ANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKE 204 (445)
Q Consensus 125 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 204 (445)
..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88899999999999999998666677888999999999999988766666788889999999999888665567888888
Q ss_pred CCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCC
Q 042446 205 LKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG 241 (445)
Q Consensus 205 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 241 (445)
|++|++++|.+.+..+..+..+++|+.|++++|++..
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 8889988888886666677788888888888887763
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-23 Score=194.90 Aligned_cols=254 Identities=15% Similarity=0.139 Sum_probs=135.3
Q ss_pred CCEEECCCCcccccCCccccCC--CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCccc-CCccccCCCCCCEEe
Q 042446 85 LREINLMDNTIQGEIPPEFGRL--FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGS-IPFEFVFLYKLKGLS 161 (445)
Q Consensus 85 L~~L~L~~~~~~~~~~~~~~~~--~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ 161 (445)
++.++++++.+. +..+..+ +++++|+++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 567777777665 2344555 6777777777777654443 44567777777777766533 455555666666666
Q ss_pred cccccCCCCCCccCCCCCCcceEeeccc-ccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCC-cC
Q 042446 162 LHKNNLTGGISPFLGNLTFLELVSLSYN-SFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQN-QI 239 (445)
Q Consensus 162 l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~-~~ 239 (445)
+++|.+.+..+..+..+++|++|++++| .+++. .++..+..+++|++|++++| .+
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----------------------~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----------------------ALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------------HHHHHHHHCTTCCEEECCCCTTC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------------HHHHHHhcCCCCCEEcCCCCCCc
Confidence 6666555444444444555555555554 23321 12223333444444444444 33
Q ss_pred CCC-CCcccccCCC-CccEEEccCC--cCc-ccCcccCcCCCCCCEEECccCc-CcccCcccccCCCCCCEEEccCCc-C
Q 042446 240 HGS-LPSCLGLNFP-NLKFFQIDQN--FFT-GSIPVSLSNASKLEVIQIANNS-FSGKFSVNFGGMKNLSHLILQSSN-L 312 (445)
Q Consensus 240 ~~~-~~~~~~~~~~-~L~~L~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~ 312 (445)
.+. ++..+.. ++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +
T Consensus 182 ~~~~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 182 TEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CHHHHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred ChHHHHHHHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 321 2222222 44 5555555555 233 2334445556667777777766 555555566666777777776664 2
Q ss_pred CCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCcccc
Q 042446 313 GSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIG 376 (445)
Q Consensus 313 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 376 (445)
.. .....+..+++|++|++++| +++. .+......+..|++++|.+++..|..+.
T Consensus 261 ~~------~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 261 IP------ETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CG------GGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CH------HHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 11 11224556677777777766 3322 1222222455566666666655554443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-24 Score=200.61 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=37.1
Q ss_pred cCcEEEcccCccc----ccCCccccCccCCCeeeCccCcceec----CChhhhC--CCCCCeEEccCCcccc----cccc
Q 042446 356 QLQVLFLGFNQLY----GSIPSGIGNLVNLYLLAMEQNQFIGT----IPQEMGK--LLNLQGLDFGGNHFSG----KIPS 421 (445)
Q Consensus 356 ~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~--~~~L~~L~l~~n~i~~----~~~~ 421 (445)
+|++|++++|.++ ..+|..+..+++|+.|++++|.+.+. ++..+.. +++|+.|+|++|.+++ .+|.
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 4444444444443 22333444444444444444444422 2233321 4444444444444443 2333
Q ss_pred cc-cCCCCCCeEEccCCccee
Q 042446 422 TL-GNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 422 ~l-~~l~~L~~l~l~~n~~~~ 441 (445)
.+ .++++|++|++++|++++
T Consensus 297 ~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 297 VIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHCTTCCEEECTTSBSCT
T ss_pred HHHhcCCCceEEEccCCcCCc
Confidence 33 334444444444444443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-22 Score=182.06 Aligned_cols=203 Identities=15% Similarity=0.143 Sum_probs=109.1
Q ss_pred CCCCEEECCCCcccccCCc---cccCCCCCCEEECCCCcCCCCCCccC--cCCCCCCEEEccCCcCcccCC----ccccC
Q 042446 83 SFLREINLMDNTIQGEIPP---EFGRLFRLEALFLANNSLVGKIPANL--SYCSRLTVLSLGQNKLVGSIP----FEFVF 153 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~---~~~~~~~L~~L~l~~~~i~~~~p~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 153 (445)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4467777777666432111 11234557777777777776677666 677777777777777764333 23345
Q ss_pred CCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccc--c--CcccCCCCCCCEEEccCCCCcccCCc----cCcC
Q 042446 154 LYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGN--I--PDSLGQLKELKSLAIGVNNLSGKIPP----SICN 225 (445)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~~~----~l~~ 225 (445)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . +..+.++++|++|++++|.++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 66777777777776666566666666666666666665421 1 122345566666666666554 2221 1234
Q ss_pred CCCCcEEEccCCcCCCCCCcccccC--CCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCc
Q 042446 226 LSFLVNFSVSQNQIHGSLPSCLGLN--FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFS 289 (445)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (445)
+++|++|++++|.+.+..|..+... +++|++|++++|.++ .+|..+. ++|++|++++|.++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 4555555555555554334333221 134444444444444 2333332 34444444444443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-23 Score=196.40 Aligned_cols=268 Identities=14% Similarity=0.134 Sum_probs=153.2
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCC----ccccCCC-CCCEEECCCCcCCCCCCccCcCC-----CCC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIP----PEFGRLF-RLEALFLANNSLVGKIPANLSYC-----SRL 133 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~i~~~~p~~l~~l-----~~L 133 (445)
+.++.+.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677777777777666666668888888888875555 5667777 78888888888776656555553 778
Q ss_pred CEEEccCCcCcccCCcc----ccCC-CCCCEEecccccCCCCCCcc----CCC-CCCcceEeecccccccccCcccCCCC
Q 042446 134 TVLSLGQNKLVGSIPFE----FVFL-YKLKGLSLHKNNLTGGISPF----LGN-LTFLELVSLSYNSFEGNIPDSLGQLK 203 (445)
Q Consensus 134 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~~~~~~~~~l~~l~ 203 (445)
++|++++|.+++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+.......
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----- 157 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE----- 157 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-----
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH-----
Confidence 88888888776544443 3333 66777777777665433322 122 235555555555544211111
Q ss_pred CCCEEEccCCCCcccCCccCcCCC-CCcEEEccCCcCCCCCCccccc---CC-CCccEEEccCCcCccc----CcccCcC
Q 042446 204 ELKSLAIGVNNLSGKIPPSICNLS-FLVNFSVSQNQIHGSLPSCLGL---NF-PNLKFFQIDQNFFTGS----IPVSLSN 274 (445)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~---~~-~~L~~L~l~~~~~~~~----~~~~l~~ 274 (445)
++..+..++ +|++|++++|.+.+..+..+.. .. ++|++|++++|.+++. ++..+..
T Consensus 158 ---------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 158 ---------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp ---------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred ---------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 111122222 4455555554444322221111 12 3555666665555532 2333333
Q ss_pred -CCCCCEEECccCcCcccCc----ccccCCCCCCEEEccCCcCCCCCCCC-CcccccccCCCCCcEEEccCCcceecCCh
Q 042446 275 -ASKLEVIQIANNSFSGKFS----VNFGGMKNLSHLILQSSNLGSGESDE-MGFINSLANCSKLRVLSFGRNQFRGVLPH 348 (445)
Q Consensus 275 -~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 348 (445)
.++|++|++++|.+++... ..+..+++|+.|++++|.+....... ..+...+..+++|+.|++++|.+.+..+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 3477777777777765433 33456677777777777744332210 12334566778888888888888765454
Q ss_pred hhh
Q 042446 349 SIT 351 (445)
Q Consensus 349 ~~~ 351 (445)
.+.
T Consensus 303 ~~~ 305 (362)
T 3goz_A 303 PIS 305 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-22 Score=184.25 Aligned_cols=232 Identities=13% Similarity=0.110 Sum_probs=136.1
Q ss_pred CcceEeecccccccccCc---ccCCCCCCCEEEccCCCCcccCCccC--cCCCCCcEEEccCCcCCCCCCcccccCCCCc
Q 042446 180 FLELVSLSYNSFEGNIPD---SLGQLKELKSLAIGVNNLSGKIPPSI--CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNL 254 (445)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 254 (445)
.++.+.+.++.+...... .+...++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------- 137 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------- 137 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-------
Confidence 455666665554321100 01123457777777777766666665 566666666666666654322100
Q ss_pred cEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcE
Q 042446 255 KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRV 334 (445)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 334 (445)
...+..+++|++|++++|.+.+..+..+..+++|++|++++|++...... .....+..+++|++
T Consensus 138 --------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 138 --------------ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL--MAALCPHKFPAIQN 201 (310)
T ss_dssp --------------HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH--HTTSCTTSSCCCCS
T ss_pred --------------HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh--hHHHhhhcCCCCCE
Confidence 01222344555555555555444444555555555555555544321000 00112345667777
Q ss_pred EEccCCcceecCCh---hh-hhccccCcEEEcccCcccccCCccccCc---cCCCeeeCccCcceecCChhhhCCCCCCe
Q 042446 335 LSFGRNQFRGVLPH---SI-TNLSSQLQVLFLGFNQLYGSIPSGIGNL---VNLYLLAMEQNQFIGTIPQEMGKLLNLQG 407 (445)
Q Consensus 335 L~l~~~~~~~~~~~---~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 407 (445)
|++++|.++ .++. .+ ..+. +|++|++++|.+++..|..+..+ ++|+.|++++|.+. .+|..+. ++|+.
T Consensus 202 L~Ls~N~l~-~l~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~ 276 (310)
T 4glp_A 202 LALRNTGME-TPTGVCAALAAAGV-QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRV 276 (310)
T ss_dssp CBCCSSCCC-CHHHHHHHHHHHTC-CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSC
T ss_pred EECCCCCCC-chHHHHHHHHhcCC-CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCE
Confidence 777777765 2222 12 2334 78888888888876656666555 68888888888888 6676664 78899
Q ss_pred EEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 408 LDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 408 L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred EECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99999988843 33 5677889999999998864
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=170.28 Aligned_cols=197 Identities=13% Similarity=0.136 Sum_probs=162.2
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCc-CCCCCCccCcCCCCCCEEEccC-CcCcccCCccccCCCCCCEE
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNS-LVGKIPANLSYCSRLTVLSLGQ-NKLVGSIPFEFVFLYKLKGL 160 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~p~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 160 (445)
++|++|++++|.+++..+..+..+++|++|++++|. +++..+..+.++++|++|++++ |.+....+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378999999999987777788999999999999997 8766666888999999999998 88886666788999999999
Q ss_pred ecccccCCCCCCccCCCCCCcc---eEeeccc-ccccccCcccCCCCCCC-EEEccCCCCcccCCccCcCCCCCcEEEcc
Q 042446 161 SLHKNNLTGGISPFLGNLTFLE---LVSLSYN-SFEGNIPDSLGQLKELK-SLAIGVNNLSGKIPPSICNLSFLVNFSVS 235 (445)
Q Consensus 161 ~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 235 (445)
++++|.+.+ +|. +..+++|+ +|++++| .+....+..|.++++|+ +|++++|.++ .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999999885 555 78888888 9999999 88866666789999999 9999999998 555544444889999999
Q ss_pred CCc-CCCCCCcccccCC-CCccEEEccCCcCcccCcccCcCCCCCCEEECccC
Q 042446 236 QNQ-IHGSLPSCLGLNF-PNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN 286 (445)
Q Consensus 236 ~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (445)
+|+ +. .++......+ ++|+.|++++|.+++ +|.. .+++|+.|++.++
T Consensus 188 ~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCC-EECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcc-cCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 995 76 5554444447 899999999999885 4433 6788999998876
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-21 Score=167.86 Aligned_cols=197 Identities=17% Similarity=0.154 Sum_probs=137.1
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc-CcccCCccccCCCCCCEEeccc-ccCCCCCCccCCCCCCcceE
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK-LVGSIPFEFVFLYKLKGLSLHK-NNLTGGISPFLGNLTFLELV 184 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L 184 (445)
.+|++|++++|.+++..+..+.++++|++|++++|. +....+..|.++++|++|++++ |.+....+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378899999998886666678888999999999886 7755566788888888888888 78876666677788888888
Q ss_pred eecccccccccCcccCCCCCCC---EEEccCC-CCcccCCccCcCCCCCc-EEEccCCcCCCCCCcccccCCCCccEEEc
Q 042446 185 SLSYNSFEGNIPDSLGQLKELK---SLAIGVN-NLSGKIPPSICNLSFLV-NFSVSQNQIHGSLPSCLGLNFPNLKFFQI 259 (445)
Q Consensus 185 ~l~~~~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 259 (445)
++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ .+++++|.+. .++...... ++|++|++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEc
Confidence 888888774 554 77777777 8888887 77755555677777777 7777777765 555544442 56666666
Q ss_pred cCCc-CcccCcccCcCC-CCCCEEECccCcCcccCcccccCCCCCCEEEccCC
Q 042446 260 DQNF-FTGSIPVSLSNA-SKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSS 310 (445)
Q Consensus 260 ~~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 310 (445)
++|. +++..+..+..+ ++|++|++++|.++..... .+++|+.|.++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 6663 554444555555 6666666666665533222 3455555555443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=165.68 Aligned_cols=180 Identities=20% Similarity=0.239 Sum_probs=122.3
Q ss_pred CCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEc
Q 042446 228 FLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLIL 307 (445)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 307 (445)
..+.++++++.+. .+|..+ .+.++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567777777766 566554 357778888888777666667777778888888887777666666777777777777
Q ss_pred cCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCc
Q 042446 308 QSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAME 387 (445)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 387 (445)
++|.+..... ..+..+++|++|++++|.+++..+..+..+. +|++|++++|.+++..+..+..+++|+.|+++
T Consensus 91 ~~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 91 ANNQLASLPL------GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TTSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcccccCh------hHhcccCCCCEEEcCCCcCCCcChhHhccCC-cccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 7777765322 2456667777777777777644333344444 67777777777765444456667777777777
Q ss_pred cCcceecCChhhhCCCCCCeEEccCCccccc
Q 042446 388 QNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 388 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
+|.+.+..+..+..+++|+.|++++|++...
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777655555666677777777777776543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=170.86 Aligned_cols=195 Identities=19% Similarity=0.299 Sum_probs=151.4
Q ss_pred cCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCC
Q 042446 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKL 278 (445)
Q Consensus 199 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 278 (445)
...+++|++|+++++.+. .++ .+..+++|+.|++++|.+. .++. +. .+++|++|++++|.+++. ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 345788999999999887 444 5788899999999999887 4444 43 488999999999988753 368888999
Q ss_pred CEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCc
Q 042446 279 EVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQ 358 (445)
Q Consensus 279 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 358 (445)
++|++++|.+++.. .+..+++|++|++++|.+.... .+..+++|+.|++++|.+++ ++. +..++ +|+
T Consensus 110 ~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~L~ 176 (308)
T 1h6u_A 110 KTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--------PLAGLTNLQYLSIGNAQVSD-LTP-LANLS-KLT 176 (308)
T ss_dssp CEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCC-CGG-GTTCT-TCC
T ss_pred CEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCc--------cccCCCCccEEEccCCcCCC-Chh-hcCCC-CCC
Confidence 99999999887543 3788899999999998886632 26778889999999988874 333 55555 889
Q ss_pred EEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccc
Q 042446 359 VLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417 (445)
Q Consensus 359 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 417 (445)
+|++++|.+++. +. +..+++|+.|++++|.+.+.. .+..+++|+.|++++|++++
T Consensus 177 ~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 177 TLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred EEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 999999888743 32 777888999999988887433 37788889999999888874
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=170.63 Aligned_cols=193 Identities=24% Similarity=0.370 Sum_probs=106.4
Q ss_pred cCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 042446 80 GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKG 159 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (445)
..+++|++|+++++.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+ ++ .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCE
Confidence 34566667777766665 333 45666677777777766663 333 6666677777777666652 22 4566666666
Q ss_pred EecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcC
Q 042446 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQI 239 (445)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 239 (445)
|++++|.+.+. + .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS-P-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc-c-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence 66666666532 2 2555666666666666655322 1 5555666666666666552 222 55555555565555555
Q ss_pred CCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCc
Q 042446 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFS 289 (445)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (445)
.+ ++. +. .+++|++|++++|.+.+.. .+..+++|++|++++|.++
T Consensus 186 ~~-~~~-l~-~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SD-ISP-LA-SLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CC-CGG-GG-GCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred Cc-Chh-hc-CCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 42 222 22 2455555555555554322 2444555555555555443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=156.63 Aligned_cols=183 Identities=23% Similarity=0.231 Sum_probs=125.7
Q ss_pred CCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCC
Q 042446 44 RHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123 (445)
Q Consensus 44 ~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 123 (445)
...|.|.++.|... .++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 4 ~C~C~~~~v~c~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 4 RCSCSGTTVECYSQ------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TCEEETTEEECCSS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEECCCEEEecCC------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 45678887777543 232 233322 457889999999888666666788888999999888888665
Q ss_pred CccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCC
Q 042446 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLK 203 (445)
Q Consensus 124 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 203 (445)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 66678888888888888888755555577788888888888877765555566777777777777777654444566666
Q ss_pred CCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccc
Q 042446 204 ELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLG 248 (445)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 248 (445)
+|++|++++|.+. +.++.|+.|+++.|.+.+.+|..+.
T Consensus 149 ~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 149 SLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCc
Confidence 7777777666544 3344556666666655555555443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-19 Score=152.32 Aligned_cols=181 Identities=22% Similarity=0.178 Sum_probs=136.1
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56777777776 445433 458889999999888666667788889999999988888555556788888888888888
Q ss_pred cCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCc
Q 042446 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS 245 (445)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 245 (445)
.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 8886666667788888888888888886555567788888888888888875555557778888888888886542
Q ss_pred ccccCCCCccEEEccCCcCcccCcccCcCCCC
Q 042446 246 CLGLNFPNLKFFQIDQNFFTGSIPVSLSNASK 277 (445)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 277 (445)
.++.|+.|++..|.+++.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 2566777777777777777776665544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-19 Score=163.41 Aligned_cols=240 Identities=18% Similarity=0.169 Sum_probs=155.7
Q ss_pred CEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCC-ccCcCCCCCcE-EEcc
Q 042446 158 KGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIP-PSICNLSFLVN-FSVS 235 (445)
Q Consensus 158 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~-L~l~ 235 (445)
++++.+++.++ .+|..+ .+++++|++++|.++...+.+|.++++|++|++++|.+.+.++ ..|..++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777777777 556554 3578888888888885444578888888888888888765444 45667777665 4455
Q ss_pred CCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECcc-CcCcccCcccccCCC-CCCEEEccCCcCC
Q 042446 236 QNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIAN-NSFSGKFSVNFGGMK-NLSHLILQSSNLG 313 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~-~L~~L~l~~~~~~ 313 (445)
.|++. .++......+++|++|++++|.+....+..+....++..+++.+ +.+.......|..++ .++.|++++|++.
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 56666 44333333478888888888887765555555666777777765 355555555555553 5777888888776
Q ss_pred CCCCCCCcccccccCCCCCcEEEccC-CcceecCChh-hhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcc
Q 042446 314 SGESDEMGFINSLANCSKLRVLSFGR-NQFRGVLPHS-ITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQF 391 (445)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 391 (445)
.+.. ......+|+++.+.+ |.++ .+|.. +..+. +|++|++++|+++ .+|.. .+.+|+.|.+.++..
T Consensus 168 ~i~~-------~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~-~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 168 EIHN-------SAFNGTQLDELNLSDNNNLE-ELPNDVFHGAS-GPVILDISRTRIH-SLPSY--GLENLKKLRARSTYN 235 (350)
T ss_dssp EECT-------TSSTTEEEEEEECTTCTTCC-CCCTTTTTTEE-CCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTT
T ss_pred CCCh-------hhccccchhHHhhccCCccc-CCCHHHhccCc-ccchhhcCCCCcC-ccChh--hhccchHhhhccCCC
Confidence 5332 333455678888865 4444 55544 34444 7888888888877 34432 244566666655554
Q ss_pred eecCChhhhCCCCCCeEEccCCc
Q 042446 392 IGTIPQEMGKLLNLQGLDFGGNH 414 (445)
Q Consensus 392 ~~~~~~~~~~~~~L~~L~l~~n~ 414 (445)
.+.+|. +..+++|+.+++.++.
T Consensus 236 l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 236 LKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp CCCCCC-TTTCCSCCEEECSCHH
T ss_pred cCcCCC-chhCcChhhCcCCCCc
Confidence 446663 6677788888877643
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=161.77 Aligned_cols=234 Identities=15% Similarity=0.067 Sum_probs=157.3
Q ss_pred CCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCC-ccCcCCCCCCE-EEccCCcCcc
Q 042446 68 SKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIP-ANLSYCSRLTV-LSLGQNKLVG 145 (445)
Q Consensus 68 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p-~~l~~l~~L~~-L~l~~~~~~~ 145 (445)
++.++ .+|..+ .+++++|+|++|.++...+.+|.++++|++|++++|.+.+.+| ..|.+++++++ +.+.+|++..
T Consensus 18 ~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 18 ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 34454 455544 3678999999999986666678999999999999999865554 46788888775 5566788886
Q ss_pred cCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecc-cccccccCcccCCC-CCCCEEEccCCCCcccCCccC
Q 042446 146 SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSY-NSFEGNIPDSLGQL-KELKSLAIGVNNLSGKIPPSI 223 (445)
Q Consensus 146 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l 223 (445)
..|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+ ..++.|++++|.++ .++...
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~ 173 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA 173 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTS
T ss_pred cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhh
Confidence 7778889999999999999988866666666677788888865 44554444455555 35778888888887 455555
Q ss_pred cCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCC
Q 042446 224 CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303 (445)
Q Consensus 224 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 303 (445)
....+|+++++..+...+.+|...+..+++|+.|++++|.++...+.. +.+|+.|.+.++.-....+ .+..+++|+
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~ 249 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALM 249 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCC
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChh
Confidence 555677777776543334666655455777777777777776432222 3445555554443222333 245566666
Q ss_pred EEEccC
Q 042446 304 HLILQS 309 (445)
Q Consensus 304 ~L~l~~ 309 (445)
.+++.+
T Consensus 250 ~l~l~~ 255 (350)
T 4ay9_X 250 EASLTY 255 (350)
T ss_dssp EEECSC
T ss_pred hCcCCC
Confidence 666544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-19 Score=173.97 Aligned_cols=203 Identities=22% Similarity=0.285 Sum_probs=144.0
Q ss_pred CCCCCCCCc-----ceeee-EeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEE
Q 042446 39 SWNDSRHFC-----EWDGV-TCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEAL 112 (445)
Q Consensus 39 ~w~~~~~~c-----~~~~~-~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 112 (445)
.|......| .|.++ .|.. .+++.++++++.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 455555556 68887 6654 478899999999876 66655 378999999999988 666 457889999
Q ss_pred ECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccc
Q 042446 113 FLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFE 192 (445)
Q Consensus 113 ~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 192 (445)
++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|.++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 999999885 666 554 89999999998885 554 57888888888888875 444 4678888888888877
Q ss_pred cccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCC-------cEEEccCCcCCCCCCcccccCCCCccEEEccCCcCc
Q 042446 193 GNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFL-------VNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFT 265 (445)
Q Consensus 193 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (445)
+ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.+. .+|..+.. +++|+.|++++|.++
T Consensus 174 ~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 174 F-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLS 243 (571)
T ss_dssp C-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCC
T ss_pred C-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCC
Confidence 4 555 54 78888888888877 5555 433 45 66666666665 45555554 666666666666665
Q ss_pred ccCcccC
Q 042446 266 GSIPVSL 272 (445)
Q Consensus 266 ~~~~~~l 272 (445)
+..|..+
T Consensus 244 ~~~p~~l 250 (571)
T 3cvr_A 244 SRIRESL 250 (571)
T ss_dssp HHHHHHH
T ss_pred CcCHHHH
Confidence 5444443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-18 Score=148.58 Aligned_cols=164 Identities=26% Similarity=0.259 Sum_probs=120.1
Q ss_pred CCCCCCCCCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCC
Q 042446 37 LNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLAN 116 (445)
Q Consensus 37 ~~~w~~~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 116 (445)
...|..+...|.|.++.|... .+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS 73 (229)
T ss_dssp --CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hhccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC
Confidence 345666778999999888653 232 3444333 7889999999999877788888899999999999
Q ss_pred CcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccC
Q 042446 117 NSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIP 196 (445)
Q Consensus 117 ~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 196 (445)
|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+
T Consensus 74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 74 NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 9988655566788888999999888888555556777888888888888777 556666677777777777777664444
Q ss_pred cccCCCCCCCEEEccCCCCc
Q 042446 197 DSLGQLKELKSLAIGVNNLS 216 (445)
Q Consensus 197 ~~l~~l~~L~~L~l~~n~~~ 216 (445)
..+..+++|++|++++|.+.
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBC
T ss_pred HHHhCCCCCCEEEeeCCCcc
Confidence 55666666666666666654
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-18 Score=154.25 Aligned_cols=172 Identities=22% Similarity=0.333 Sum_probs=130.9
Q ss_pred cCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCC
Q 042446 224 CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303 (445)
Q Consensus 224 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 303 (445)
..+++|+.|++++|.+. .++. +.. +++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~~-~~~-l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred hhcCcccEEEccCCCcc-cChh-Hhc-CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence 45678889999988876 4443 333 8889999999988886433 78888899999998888653 3478888888
Q ss_pred EEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCe
Q 042446 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYL 383 (445)
Q Consensus 304 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 383 (445)
+|++++|.+... ..+..+++|+.|++++|.+++. ..+..++ +|++|++++|.+++..+ +..+++|+.
T Consensus 116 ~L~L~~n~i~~~--------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 116 SLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp EEECTTSCCCCC--------GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred EEECCCCcCCCC--------hhhcCCCCCCEEEccCCcCCcc--hhhccCC-CCCEEEccCCccccchh--hcCCCccCE
Confidence 888888887663 2567788888888888888743 4555555 88888888888875433 777888888
Q ss_pred eeCccCcceecCChhhhCCCCCCeEEccCCcccc
Q 042446 384 LAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417 (445)
Q Consensus 384 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 417 (445)
|++++|.+. .++ .+..+++|+.|++++|+++.
T Consensus 183 L~L~~N~i~-~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCC-BCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCC-CCh-hhccCCCCCEEECcCCcccC
Confidence 888888877 344 37788888888888888774
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=163.06 Aligned_cols=186 Identities=23% Similarity=0.351 Sum_probs=144.2
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 042446 84 FLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLH 163 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (445)
+|++|+++++.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78999999999884 66655 378999999999988 566 457899999999998885 665 554 89999999
Q ss_pred cccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCC
Q 042446 164 KNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243 (445)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 243 (445)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.+. .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 998886 554 57889999999998884 555 56889999999998884 666 54 88999999998887 66
Q ss_pred CcccccCCCCc-------cEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 244 PSCLGLNFPNL-------KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 244 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
|. +. .+| +.|++++|.++ .+|..+..+++|++|++++|.+++..+..+..
T Consensus 196 p~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 66 32 256 88888888887 46777777888888888888887766655544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-18 Score=145.35 Aligned_cols=155 Identities=16% Similarity=0.214 Sum_probs=108.1
Q ss_pred cCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhh
Q 042446 273 SNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITN 352 (445)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 352 (445)
..+++|++|++++|.+.+. + .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~--------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN--------YNPISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC--------CGGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc--------chhhhcCCCCCEEEeECCccCcccChhhcC
Confidence 3455666666666666522 2 45666677777777664433 224566777777777777777656666666
Q ss_pred ccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeE
Q 042446 353 LSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEI 432 (445)
Q Consensus 353 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l 432 (445)
++ +|++|++++|.+++..+..+..+++|+.|++++|...+.++ .+..+++|+.|++++|++++ ++ .+..+++|++|
T Consensus 111 l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp CT-TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred CC-CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 65 78888888888876667777888888888888887333555 57788889999999988884 33 67788899999
Q ss_pred EccCCccee
Q 042446 433 VLSNNNLSG 441 (445)
Q Consensus 433 ~l~~n~~~~ 441 (445)
++++|++.+
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999998865
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=142.86 Aligned_cols=150 Identities=23% Similarity=0.266 Sum_probs=113.3
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKL 143 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~ 143 (445)
++.+++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.+
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 445555554 3454443 6788999999888876667788888888888888888877788888888888888888888
Q ss_pred cccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCc
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 216 (445)
+...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8555555677888888888888887776777777777777777777777655556777777777777777664
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-17 Score=141.90 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=111.5
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56778777776 5555443 57888888888888666667788888888888888887666777888888888888888
Q ss_pred cCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC
Q 042446 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 877555555677777777777777777666667777777777777777777555555666777777777776553
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=150.12 Aligned_cols=172 Identities=25% Similarity=0.333 Sum_probs=85.9
Q ss_pred cCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 042446 80 GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKG 159 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (445)
..+++|++|+++++.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 34555666666666554 222 25556666666666666553222 5555666666666665542 22 2555555555
Q ss_pred EecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcC
Q 042446 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQI 239 (445)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 239 (445)
|++++|.+.+. ..+..+++|++|++++|.+.+ . ..+..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~------------------------~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITD------------------------I--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC------------------------C--GGGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc------------------------c--hhhccCCCCCEEEccCCcc
Confidence 55555554421 223444444444444444432 1 3344444444444444444
Q ss_pred CCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcc
Q 042446 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSG 290 (445)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (445)
.+..+ +. .+++|++|++++|.+++ ++ .+..+++|+.|++++|.+.+
T Consensus 169 ~~~~~--l~-~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LA-GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GT-TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hc-CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 42211 22 25555555555555543 22 35556666666666666543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-17 Score=140.27 Aligned_cols=151 Identities=23% Similarity=0.237 Sum_probs=115.4
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCcccccCC-ccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCC
Q 042446 63 ALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIP-PEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQN 141 (445)
Q Consensus 63 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~ 141 (445)
.++++++.++ .+|..+. ..+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5677777776 3565443 456889999998886644 45788888888888888888766777888888888888888
Q ss_pred cCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCc
Q 042446 142 KLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216 (445)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 216 (445)
.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888666666888888888888888888777777777777888888777777666677777777777777777665
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-17 Score=140.04 Aligned_cols=152 Identities=17% Similarity=0.159 Sum_probs=112.5
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCC-ccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIP-ANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHK 164 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (445)
+.++++++.++ .+|..+ ...+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57888888876 456544 3456788888888875544 3467788888888888888766666777888888888888
Q ss_pred ccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC
Q 042446 165 NNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 165 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8877666666777778888888888777666777777777788888777777666777777777777777777665
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=138.79 Aligned_cols=153 Identities=22% Similarity=0.214 Sum_probs=112.3
Q ss_pred CCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccc
Q 042446 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHK 164 (445)
Q Consensus 85 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (445)
-+.++++++.++ .+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 467788777776 5555443 7788888888888877777788888888888888888754555667788888888888
Q ss_pred ccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCC
Q 042446 165 NNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG 241 (445)
Q Consensus 165 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 241 (445)
|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 8877666666677777888888777777 566777777777777777777774444556667777777777776653
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-17 Score=161.28 Aligned_cols=174 Identities=22% Similarity=0.339 Sum_probs=139.2
Q ss_pred CcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCC
Q 042446 223 ICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNL 302 (445)
Q Consensus 223 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 302 (445)
+..+++|+.|++++|.+. .++. +.. +++|+.|++++|.+.+..+ +..+++|+.|+|++|.+.+. ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~~-l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCTT-GGG-CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCC-CChH-Hcc-CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence 356788999999999886 4543 443 8999999999999886443 88899999999999988753 368889999
Q ss_pred CEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCC
Q 042446 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLY 382 (445)
Q Consensus 303 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 382 (445)
+.|++++|.+... ..+..+++|+.|+|++|.+.+. ..+..++ +|++|+|++|.+++..| +..+++|+
T Consensus 112 ~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 112 KSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp CEEECTTSCCCCC--------GGGGGCTTCSEEECCSSCCCCC--GGGGSCT-TCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred CEEEecCCCCCCC--------ccccCCCccCEEECCCCccCCc--hhhcccC-CCCEEECcCCcCCCchh--hccCCCCC
Confidence 9999999988663 2577889999999999988743 4556665 89999999999886544 78889999
Q ss_pred eeeCccCcceecCChhhhCCCCCCeEEccCCccccc
Q 042446 383 LLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 383 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
.|+|++|.+.+ + ..+..+++|+.|+|++|++.+.
T Consensus 179 ~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 179 NLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred EEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 99999998874 3 3578889999999999988754
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-17 Score=153.17 Aligned_cols=175 Identities=23% Similarity=0.258 Sum_probs=119.5
Q ss_pred cEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCc-CCCCCCEEECccCcCcccCcccccCCCCCCEEEcc
Q 042446 230 VNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLS-NASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQ 308 (445)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 308 (445)
+.++++++.+. .+|..+ .+.++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56777777776 566654 45678888888888766666666 77888888888888877766777778888888888
Q ss_pred CCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCcc-c---cCccCCCee
Q 042446 309 SSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSG-I---GNLVNLYLL 384 (445)
Q Consensus 309 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~---~~~~~L~~L 384 (445)
+|++..... ..+..+++|+.|++++|.+++..+..+..+. +|++|++++|.++. +|.. + ..+++|+.|
T Consensus 97 ~N~l~~~~~------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 97 SNHLHTLDE------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLSQNQISR-FPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp SSCCCEECT------TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCS-CCGGGTC----CTTCCEE
T ss_pred CCcCCcCCH------HHhCCCcCCCEEECCCCcccEECHHHhCCcc-cCCEEECCCCcCCe-eCHHHhcCcccCCcCCEE
Confidence 887765322 2456677777777777777765566666665 77777777777763 3333 3 456777777
Q ss_pred eCccCcceecCChhhhCCCC--CCeEEccCCccc
Q 042446 385 AMEQNQFIGTIPQEMGKLLN--LQGLDFGGNHFS 416 (445)
Q Consensus 385 ~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~i~ 416 (445)
++++|.+.+..+..+..++. ++.|+|++|++.
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 77777776433355666665 366777777665
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=140.78 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=41.1
Q ss_pred CCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 042446 82 LSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLS 161 (445)
Q Consensus 82 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (445)
+++|++|+++++.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444444443 222 3444444444444444332 112333444444444444444333333333444444444
Q ss_pred cccccCCCCCCccCCCCCCcceEeeccc
Q 042446 162 LHKNNLTGGISPFLGNLTFLELVSLSYN 189 (445)
Q Consensus 162 l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 189 (445)
+++|.+.+..+..+..+++|++|++++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 4444333322333333333333333333
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-17 Score=151.45 Aligned_cols=175 Identities=21% Similarity=0.203 Sum_probs=115.8
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCc-CCCCCCEEEccCCcCcccCCccccCCCCCCEEeccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLS-YCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHK 164 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (445)
+.++++++.++ .+|..+. ..++.|++++|.+++..+..+. ++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57788887776 5555433 4577888888888766666666 778888888888888766666777788888888888
Q ss_pred ccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCcc-C---cCCCCCcEEEccCCcCC
Q 042446 165 NNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPS-I---CNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 165 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l---~~l~~L~~L~l~~~~~~ 240 (445)
|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.++ .+|.. + ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 8777665666777777777777777777666667777777777777777776 33333 2 34666666666666665
Q ss_pred CCCCcccccCCCC--ccEEEccCCcCc
Q 042446 241 GSLPSCLGLNFPN--LKFFQIDQNFFT 265 (445)
Q Consensus 241 ~~~~~~~~~~~~~--L~~L~l~~~~~~ 265 (445)
.++......++. ++.|++.+|.+.
T Consensus 177 -~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 -KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -ccCHHHhhhccHhhcceEEecCCCcc
Confidence 333222222443 245555555443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-18 Score=177.61 Aligned_cols=233 Identities=19% Similarity=0.183 Sum_probs=122.8
Q ss_pred ChhhHHHHHHHHHhccCCCCCCCCCCCCC-CCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEC---
Q 042446 15 EEGDRAALQAFKSMIAHDPQRILNSWNDS-RHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINL--- 90 (445)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~~~~~~~~w~~~-~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L--- 90 (445)
...+++++.++..+...+.+.....|... .....|.+..+.. .+++.+++.++.+.. .+..+.....|+.+.+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~ 206 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDED 206 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcccccCc
Confidence 34666777888777766666666667443 4566787777666 679999998888864 3433333333333332
Q ss_pred --CCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCC
Q 042446 91 --MDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168 (445)
Q Consensus 91 --~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (445)
..+.+. ..++.+..+..|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..|.++++|++|++++|.+.
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 223333 45667788888999999998888 67777778888999999988888 77888888888999999888888
Q ss_pred CCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCC-CcEEEccCCcCCCCCCccc
Q 042446 169 GGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSF-LVNFSVSQNQIHGSLPSCL 247 (445)
Q Consensus 169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~ 247 (445)
.+|..+..+++|++|++++|.+. .+|..|+++++|++|++++|.+.+.+|..+..+.. ...+++++|.+.+.+|.
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-- 359 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-- 359 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence 66888888888888888888887 67777888888888888888888666666544321 22366777777655543
Q ss_pred ccCCCCccEEEccCC
Q 042446 248 GLNFPNLKFFQIDQN 262 (445)
Q Consensus 248 ~~~~~~L~~L~l~~~ 262 (445)
.|+.|+++.|
T Consensus 360 -----~l~~l~l~~n 369 (727)
T 4b8c_D 360 -----ERRFIEINTD 369 (727)
T ss_dssp -----C---------
T ss_pred -----ccceeEeecc
Confidence 4555666655
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=159.02 Aligned_cols=190 Identities=21% Similarity=0.344 Sum_probs=154.0
Q ss_pred cceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEcc
Q 042446 181 LELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQID 260 (445)
Q Consensus 181 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 260 (445)
+..+.+..+.+.... .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.+ ++. +. .+++|+.|+++
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~-~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LT-NLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GG-GCTTCCEEECC
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hc-cCCCCCEEECc
Confidence 344444544444222 2456789999999999987 444 58889999999999999984 443 44 49999999999
Q ss_pred CCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCC
Q 042446 261 QNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRN 340 (445)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 340 (445)
+|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|+|++|
T Consensus 96 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 96 ENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp SSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--------GGGGSCTTCSEEECCSS
T ss_pred CCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--------hhhcccCCCCEEECcCC
Confidence 999985 3 3789999999999999999764 4688999999999999998763 36789999999999999
Q ss_pred cceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceec
Q 042446 341 QFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGT 394 (445)
Q Consensus 341 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 394 (445)
.+.+..+ +..++ +|++|+|++|.+++ + ..+..+++|+.|+|++|.+.+.
T Consensus 164 ~l~~~~~--l~~l~-~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 164 QISDIVP--LAGLT-KLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCCCGG--GTTCT-TCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCchh--hccCC-CCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 9986555 66666 99999999999985 3 4588899999999999998843
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-17 Score=144.45 Aligned_cols=170 Identities=18% Similarity=0.285 Sum_probs=117.8
Q ss_pred CCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEE
Q 042446 226 LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHL 305 (445)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 305 (445)
+..+..++++.+.+. .++ .+.. +++|++|++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~~-l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQKE-LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHHH-HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcc-ccc-chhh-cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 344566667777665 333 2333 7788888888888774 33 57778888888888888775544 7788888888
Q ss_pred EccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeee
Q 042446 306 ILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLA 385 (445)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 385 (445)
++++|++...+. +.. ++|++|++++|.+++ ++ .+..++ +|++|++++|++++ ++ .+..+++|+.|+
T Consensus 91 ~L~~N~l~~l~~--------~~~-~~L~~L~L~~N~l~~-~~-~l~~l~-~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 91 SVNRNRLKNLNG--------IPS-ACLSRLFLDNNELRD-TD-SLIHLK-NLEILSIRNNKLKS-IV-MLGFLSKLEVLD 156 (263)
T ss_dssp ECCSSCCSCCTT--------CCC-SSCCEEECCSSCCSB-SG-GGTTCT-TCCEEECTTSCCCB-CG-GGGGCTTCCEEE
T ss_pred ECCCCccCCcCc--------ccc-CcccEEEccCCccCC-Ch-hhcCcc-cccEEECCCCcCCC-Ch-HHccCCCCCEEE
Confidence 888887766431 122 778888888887764 32 355555 78888888888774 33 567777888888
Q ss_pred CccCcceecCChhhhCCCCCCeEEccCCccccc
Q 042446 386 MEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 386 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
+++|.+.+. ..+..+++|+.|++++|++.+.
T Consensus 157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 888877744 5567777888888888877644
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=135.74 Aligned_cols=150 Identities=22% Similarity=0.285 Sum_probs=70.7
Q ss_pred ccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcc
Q 042446 103 FGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLE 182 (445)
Q Consensus 103 ~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 182 (445)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+ ++. +.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCC
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCc-ccc-Cccc
Confidence 344444444444444444 222 344444444444444444422 21 4444445555555444442 111 111 4555
Q ss_pred eEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCC
Q 042446 183 LVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQN 262 (445)
Q Consensus 183 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (445)
+|++++|.+++ + ..+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+.+. ..+. .+++|+.|++++|
T Consensus 110 ~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~-~l~~L~~L~l~~N 182 (263)
T 1xeu_A 110 RLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLT-RLKKVNWIDLTGQ 182 (263)
T ss_dssp EEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTST-TCCCCCEEEEEEE
T ss_pred EEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhc-cCCCCCEEeCCCC
Confidence 55555555542 1 235555555555555555552 22 445555555666655555432 2222 2566666666666
Q ss_pred cCcc
Q 042446 263 FFTG 266 (445)
Q Consensus 263 ~~~~ 266 (445)
.+..
T Consensus 183 ~~~~ 186 (263)
T 1xeu_A 183 KCVN 186 (263)
T ss_dssp EEEC
T ss_pred cccC
Confidence 5553
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-14 Score=134.66 Aligned_cols=331 Identities=15% Similarity=0.044 Sum_probs=204.6
Q ss_pred ccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCC
Q 042446 75 LSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFL 154 (445)
Q Consensus 75 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 154 (445)
-..++.++.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....++.++.+|+.+.+..+ +......+|..+
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 3446677888888888643 55456667888888888888654 55455567778888887766554 332444456555
Q ss_pred CCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEc
Q 042446 155 YKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSV 234 (445)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 234 (445)
..++....... .......|.++.+|+.+.+..+. ......+|..+.+|+.+.+..+ ++......+..+..|+.+.+
T Consensus 140 ~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 140 DFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 44333322222 11234557778888888886543 2244566777788888877654 43344556667777777766
Q ss_pred cCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCC
Q 042446 235 SQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGS 314 (445)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 314 (445)
..+.. .+...... ...|+.+.+... ++......+..+..++.+.+..+.. ......|..++.++.+......+..
T Consensus 216 ~~~~~--~i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~ 290 (394)
T 4fs7_A 216 PNSLY--YLGDFALS-KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE 290 (394)
T ss_dssp CTTCC--EECTTTTT-TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT
T ss_pred CCCce--Eeehhhcc-cCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecc
Confidence 55432 12222222 567777777543 2323345567778888888876643 3555667778888877776554322
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceec
Q 042446 315 GESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGT 394 (445)
Q Consensus 315 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 394 (445)
..+..|.+|+.+.+..+ ++.....++.... +|+.+++..+ ++.....+|.+|.+|+.+.+..+ +...
T Consensus 291 ---------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 291 ---------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCT-SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI 357 (394)
T ss_dssp ---------TTTTTCTTCCEEEECTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred ---------ccccccccccccccccc-cceechhhhcCCC-CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe
Confidence 14567788888888654 3322233344444 7888877543 44344566777888888888665 5544
Q ss_pred CChhhhCCCCCCeEEccCCcccccccccccCCCCCCeE
Q 042446 395 IPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEI 432 (445)
Q Consensus 395 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l 432 (445)
-..+|.+|++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 358 ~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred hHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 5567778888888888654 22 234567777777664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-18 Score=172.14 Aligned_cols=179 Identities=17% Similarity=0.201 Sum_probs=88.3
Q ss_pred cCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccccc-------------CCCCCCccCCCCCCcceEe-eccccccc
Q 042446 128 SYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNN-------------LTGGISPFLGNLTFLELVS-LSYNSFEG 193 (445)
Q Consensus 128 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~~ 193 (445)
..+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34556666666666655 555556666666666654442 2233444455555555555 33332210
Q ss_pred ccCc------ccCC--CCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCc
Q 042446 194 NIPD------SLGQ--LKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFT 265 (445)
Q Consensus 194 ~~~~------~l~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (445)
++. .+.. ...|+.|++++|.++ .+|. +..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhc-CCCCCEEECCCCCCC
Confidence 000 0000 013566666666665 3443 555555666666655555 45544443 555555555555555
Q ss_pred ccCcccCcCCCCCCEEECccCcCcccC-cccccCCCCCCEEEccCCcCCC
Q 042446 266 GSIPVSLSNASKLEVIQIANNSFSGKF-SVNFGGMKNLSHLILQSSNLGS 314 (445)
Q Consensus 266 ~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~ 314 (445)
+ +| .+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+..
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 3 33 4555555555555555554443 4444445555555555444433
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=140.95 Aligned_cols=269 Identities=14% Similarity=0.047 Sum_probs=160.6
Q ss_pred CCCCCEEecccccCCCCCCccCCC-CCCcceEeecccccc--cccCcccCCCCCCCEEEccCCCCcccCCccCcC-----
Q 042446 154 LYKLKGLSLHKNNLTGGISPFLGN-LTFLELVSLSYNSFE--GNIPDSLGQLKELKSLAIGVNNLSGKIPPSICN----- 225 (445)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~----- 225 (445)
+.+++.|.++++--. .....+.. +++|+.|++++|.+. ..... .++.++.+.+..+.+. ...|..
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhccccccc
Confidence 456788887764211 11112222 677888888888776 22211 1222344444444332 344555
Q ss_pred ---CCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCc----CcccCcccccC
Q 042446 226 ---LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNS----FSGKFSVNFGG 298 (445)
Q Consensus 226 ---l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~~~~~~l~~ 298 (445)
+++|+.+++.. .+. .++...+.++++|+.+++.+|.+....+..+..+.++..+...... ........|..
T Consensus 97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 78888888877 555 5665555568888888888887776666677777777766665521 11222334455
Q ss_pred CCCCC-EEEccCCcCCCC-------CCC------------CCcccccccCCCCCcEEEccCCcceecCChhhhhccccCc
Q 042446 299 MKNLS-HLILQSSNLGSG-------ESD------------EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQ 358 (445)
Q Consensus 299 ~~~L~-~L~l~~~~~~~~-------~~~------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 358 (445)
+..|+ .+.+........ ... ...+......|++|+.+++++|.++......+..+. +|+
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~-~L~ 253 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK-YLL 253 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT-TCC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC-CCC
Confidence 55555 333322110000 000 000000011378888888888877733334444454 888
Q ss_pred EEEcccCcccccCCccccCccCCC-eeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEc
Q 042446 359 VLFLGFNQLYGSIPSGIGNLVNLY-LLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVL 434 (445)
Q Consensus 359 ~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l 434 (445)
++++.+| ++.....+|.+|++|+ .+.+.+ .+....+.+|.+|++|+.+++++|.++...+.+|.++++|+.++.
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8888877 6545566778888888 888877 566555678888888888888888888666678888888888764
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=130.50 Aligned_cols=213 Identities=17% Similarity=0.134 Sum_probs=92.0
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSL 162 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (445)
..++.+.+.+. ++.....+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+......+|.++++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44555555442 332333444443 4556655443 443344445442 455555554 333334445555555555555
Q ss_pred ccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCC
Q 042446 163 HKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGS 242 (445)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 242 (445)
.+|.+.......|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++......|.. .+|+.+.+..+ +. .
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~-~ 261 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VT-N 261 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CC-E
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-cc-E
Confidence 55555433333333 355555555432 33333445555555555555432 22122223333 44555444221 22 2
Q ss_pred CCcccccCCCCccEEEccCCcCc-----ccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEc
Q 042446 243 LPSCLGLNFPNLKFFQIDQNFFT-----GSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLIL 307 (445)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 307 (445)
++...+..+++|+.+.+.++.+. ......+..|++|+.+.+.. .+.......|..|++|+.+.+
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 32333333444444444443322 12223344444444444442 233333334444444444444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=124.81 Aligned_cols=133 Identities=23% Similarity=0.184 Sum_probs=80.3
Q ss_pred CCCCCEEECCCCccc-ccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 042446 82 LSFLREINLMDNTIQ-GEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGL 160 (445)
Q Consensus 82 l~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (445)
.++|++|++++|.++ +.++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356677777777665 45566666666777777777766633 556666677777777776664455555556666666
Q ss_pred ecccccCCCCC-CccCCCCCCcceEeecccccccccC---cccCCCCCCCEEEccCCCCc
Q 042446 161 SLHKNNLTGGI-SPFLGNLTFLELVSLSYNSFEGNIP---DSLGQLKELKSLAIGVNNLS 216 (445)
Q Consensus 161 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~n~~~ 216 (445)
++++|.+.+.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666665321 1445556666666666666553322 24555666666666655554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-15 Score=123.90 Aligned_cols=125 Identities=29% Similarity=0.329 Sum_probs=60.3
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCc-cccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPP-EFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK 142 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~ 142 (445)
++++++.+. .+|..+.. ++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus 13 l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 13 VDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 444444443 33433322 555555555555533332 24555555555555555554445555555555555555555
Q ss_pred CcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccccc
Q 042446 143 LVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSF 191 (445)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 191 (445)
+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 5544444444444454444444444444444444444444444444433
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-15 Score=137.94 Aligned_cols=245 Identities=14% Similarity=0.100 Sum_probs=136.3
Q ss_pred CCCCCEEECCCCccc--c------------------cCCccccC--------CCCCCEEECCCCcCCCCCCccCcCCCCC
Q 042446 82 LSFLREINLMDNTIQ--G------------------EIPPEFGR--------LFRLEALFLANNSLVGKIPANLSYCSRL 133 (445)
Q Consensus 82 l~~L~~L~L~~~~~~--~------------------~~~~~~~~--------~~~L~~L~l~~~~i~~~~p~~l~~l~~L 133 (445)
+++|++|+|++|.+. . ....+|.+ +++|+.+++.+ .++...+.+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 677888888877766 1 11223344 55555555555 4443444445555555
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEeccccc----CCCCCCccCCCCCCcc-eEeeccccc-ccccCcccCCCCCCCE
Q 042446 134 TVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNN----LTGGISPFLGNLTFLE-LVSLSYNSF-EGNIPDSLGQLKELKS 207 (445)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~l~~~~~L~-~L~l~~~~~-~~~~~~~l~~l~~L~~ 207 (445)
+.+++++|.+....+.+|..+.++..+...... ........+.++..|+ .+.+..... .......-....+++.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 555555555443444445544444444433311 1111112223333333 222221110 0000000112334445
Q ss_pred EEccCCCCcccCCccC-cCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCC-EEECcc
Q 042446 208 LAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLE-VIQIAN 285 (445)
Q Consensus 208 L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~ 285 (445)
+.+.++-.. .....+ ..+++|+.+++..|.+. .++...+.++++|+++++.++ +.......+..+++|+ .+.+.+
T Consensus 207 l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 207 LTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred EEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 554443211 111111 13678888888888776 677766667888888888876 6666667788888888 888887
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEc
Q 042446 286 NSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSF 337 (445)
Q Consensus 286 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 337 (445)
.++.+...+|..|++|++++++.+.+..+... ++.+|++|+.+..
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~------aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE------LFGNGVPSKLIYK 328 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCCEECTT------TTCTTCCCCEEEC
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccCccchh------hhcCCcchhhhcc
Confidence 66667778888888888888888887765433 6778888888753
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=121.91 Aligned_cols=128 Identities=23% Similarity=0.239 Sum_probs=65.7
Q ss_pred CEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCc-cccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecc
Q 042446 110 EALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPF-EFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSY 188 (445)
Q Consensus 110 ~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 188 (445)
++++++++.++ .+|..+. .+|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34444444443 3333322 1445555555544433222 244555555555555555544445555555555555555
Q ss_pred cccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC
Q 042446 189 NSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 189 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5555444445555566666666666665555555555666666666666554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.2e-18 Score=165.77 Aligned_cols=210 Identities=18% Similarity=0.124 Sum_probs=136.5
Q ss_pred CCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCC
Q 042446 200 GQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLE 279 (445)
Q Consensus 200 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 279 (445)
...+.|+.|++++|.+. .+|..+..+++|+.|++++|.....++... ..+...+..|..+..+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll------------~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM------------RALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------HHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH------------HhcccccCCHHHHHHHHhcc
Confidence 45677777777777776 667777777777777765543100000000 00112223444555555555
Q ss_pred EEE-CccCcCcccCcc-----ccc--CCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhh
Q 042446 280 VIQ-IANNSFSGKFSV-----NFG--GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSIT 351 (445)
Q Consensus 280 ~L~-l~~~~~~~~~~~-----~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 351 (445)
.|+ ++.|.+.+.... .+. ....|+.|++++|.+... +. +..+++|+.|++++|.++ .+|..+.
T Consensus 413 ~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-------p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-------CH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-------CC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred cCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-------cC-ccccccCcEeecCccccc-ccchhhh
Confidence 555 343322211000 000 012588888888887652 33 677888888888888887 7788787
Q ss_pred hccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecC-ChhhhCCCCCCeEEccCCcccccccc---cccCCC
Q 042446 352 NLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTI-PQEMGKLLNLQGLDFGGNHFSGKIPS---TLGNLS 427 (445)
Q Consensus 352 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~---~l~~l~ 427 (445)
.++ +|++|++++|.+++ +| .+..+++|+.|++++|.+.+.. |..+..+++|+.|+|++|++++..+. .+..+|
T Consensus 484 ~l~-~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 484 ALR-CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp GCT-TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred cCC-CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 776 88999999888885 56 7888888999999998888665 88888889999999999988855442 234478
Q ss_pred CCCeEEc
Q 042446 428 SLSEIVL 434 (445)
Q Consensus 428 ~L~~l~l 434 (445)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 8888764
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-15 Score=123.34 Aligned_cols=133 Identities=22% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCCCCEEECccCcCc-ccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhc
Q 042446 275 ASKLEVIQIANNSFS-GKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL 353 (445)
Q Consensus 275 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 353 (445)
.++|++|++++|.+. +..+..+..+++|++|++++|.+... ..+..+++|++|++++|.+++.+|..+..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 356777777776665 34444456666666666666665442 234555566666666665554344433334
Q ss_pred cccCcEEEcccCccccc-CCccccCccCCCeeeCccCcceecCC---hhhhCCCCCCeEEccCCccc
Q 042446 354 SSQLQVLFLGFNQLYGS-IPSGIGNLVNLYLLAMEQNQFIGTIP---QEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 354 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~i~ 416 (445)
+ +|++|++++|.+++. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 95 ~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 95 P-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp T-TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred C-CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 3 555555555555431 11344444555555555554442222 23444444555544444443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-16 Score=157.25 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=94.3
Q ss_pred cCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCccccc
Q 042446 218 KIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFG 297 (445)
Q Consensus 218 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 297 (445)
..+..+..++.|+.|++++|.+. .++..++. +++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .++..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 34555566666667777666665 55555553 677777777777766 56666777777777777777776 4466677
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccC
Q 042446 298 GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGN 377 (445)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 377 (445)
.+++|++|++++|.+.. ++..+..+++|+.|+|++|.+++.+|..+......+..+++++|.+++..|.
T Consensus 291 ~l~~L~~L~L~~N~l~~-------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---- 359 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTT-------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---- 359 (727)
T ss_dssp GGTTCSEEECCSSCCCC-------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----
T ss_pred CCCCCCEEECCCCCCCc-------cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc----
Confidence 77777777777777654 3445677777888888888777666666654332334466777777765554
Q ss_pred ccCCCeeeCccC--------cceecCChhhhCCCCCCeEEccCCccc
Q 042446 378 LVNLYLLAMEQN--------QFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 378 ~~~L~~L~l~~n--------~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
.|+.|+++.| .+.+..+..+..+..+....+++|-+.
T Consensus 360 --~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 --ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --C-----------------------------------------CCC
T ss_pred --ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3444555554 222222233334444455555555543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-13 Score=127.72 Aligned_cols=249 Identities=11% Similarity=0.094 Sum_probs=192.5
Q ss_pred cccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCC
Q 042446 76 SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLY 155 (445)
Q Consensus 76 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 155 (445)
..++..+ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+....+.+|.+|++|+.+++.+|.+.......|. +.
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 3455554 7999999876 665666778775 799999987 67766778899999999999999988855555565 68
Q ss_pred CCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEcc
Q 042446 156 KLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVS 235 (445)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 235 (445)
+|+.+.+..+ +.......|.++++|+.+.+..+ +......+|.+ .+|+.+.+. +.++......|..+++|+.+.+.
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 9999999854 55566778999999999999875 55455667777 899999995 55665667888999999999998
Q ss_pred CCcCC----CCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCc
Q 042446 236 QNQIH----GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSN 311 (445)
Q Consensus 236 ~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 311 (445)
.+.+. ..++...+.++++|+.+.+.. .+.......+..|++|+.+.+..+ +......+|..+ +|+++.+.++.
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 87653 135666666799999999984 477666778899999999999665 666777889999 99999999987
Q ss_pred CCCCCCCCCcccccccCCC-CCcEEEccCCcc
Q 042446 312 LGSGESDEMGFINSLANCS-KLRVLSFGRNQF 342 (445)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~ 342 (445)
....... .+.+++ +++.|.+..+..
T Consensus 357 ~~~l~~~------~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 357 PPQVFEK------VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCBCCCS------SCCCSCTTCCEEEECGGGH
T ss_pred Ccccccc------cccCCCCCccEEEeCHHHH
Confidence 7654332 344553 677888776654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-13 Score=128.66 Aligned_cols=318 Identities=12% Similarity=0.068 Sum_probs=224.1
Q ss_pred ccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCcc
Q 042446 95 IQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPF 174 (445)
Q Consensus 95 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 174 (445)
++.....+|.++.+|+.+.+.. .++.....+|.+|.+|+.+++.++ +......+|.++.+|+.+.+..+ +.......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 4545667899999999999975 476566778999999999999765 44355667889999998877654 23233445
Q ss_pred CCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCc
Q 042446 175 LGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNL 254 (445)
Q Consensus 175 l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 254 (445)
+..+..+....... .......+|.++++|+.+.+..+. .......+..+.+|+.+.+..+ +. .+....+..+..|
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L 210 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILL 210 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTC
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhcccccc
Confidence 55555433333222 222345678899999999997654 3255667788899999988765 22 4555555568888
Q ss_pred cEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcE
Q 042446 255 KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRV 334 (445)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 334 (445)
+.+.+..+... +.........|+.+.+... +.......+..+..++.+.+..+...- . ...+..+..++.
T Consensus 211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i-~------~~~F~~~~~l~~ 280 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRI-G------GSLFYNCSGLKK 280 (394)
T ss_dssp CBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEE-C------SCTTTTCTTCCE
T ss_pred ceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCccee-e------ccccccccccce
Confidence 88887665432 2334455678999988754 334556678899999999987764321 1 125678888999
Q ss_pred EEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCc
Q 042446 335 LSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNH 414 (445)
Q Consensus 335 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 414 (445)
+......+. ...+... .+|+++.+..+ ++.....++.+|.+|+.+.+.++ +...-..+|.+|++|+.+++..+
T Consensus 281 ~~~~~~~i~---~~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~- 353 (394)
T 4fs7_A 281 VIYGSVIVP---EKTFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS- 353 (394)
T ss_dssp EEECSSEEC---TTTTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred eccCceeec---ccccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-
Confidence 888765432 1223334 48999999765 44345667889999999999754 55455688999999999999877
Q ss_pred ccccccccccCCCCCCeEEccCC
Q 042446 415 FSGKIPSTLGNLSSLSEIVLSNN 437 (445)
Q Consensus 415 i~~~~~~~l~~l~~L~~l~l~~n 437 (445)
++.....+|.+|++|+++++..+
T Consensus 354 l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccEehHHHhhCCCCCCEEEECCC
Confidence 66456689999999999999654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-15 Score=121.44 Aligned_cols=127 Identities=22% Similarity=0.152 Sum_probs=73.6
Q ss_pred CCCCEEECCCCccc-ccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 042446 83 SFLREINLMDNTIQ-GEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLS 161 (445)
Q Consensus 83 ~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (445)
++|++|++++|.++ +.++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 45555566666666666666666633 4556666666666666666644555555566666666
Q ss_pred cccccCCCC-CCccCCCCCCcceEeecccccccccC---cccCCCCCCCEEEcc
Q 042446 162 LHKNNLTGG-ISPFLGNLTFLELVSLSYNSFEGNIP---DSLGQLKELKSLAIG 211 (445)
Q Consensus 162 l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 211 (445)
+++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666665532 22445555556666665555553322 244555555555543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-14 Score=119.78 Aligned_cols=124 Identities=25% Similarity=0.256 Sum_probs=70.8
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKL 143 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~ 143 (445)
++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 455555554 3443332 45666666666665 5556666666666666666666655555566666666666666666
Q ss_pred cccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccccc
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSF 191 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 191 (445)
+...+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 654445555556666666666555533333444444555555444443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=116.86 Aligned_cols=126 Identities=21% Similarity=0.158 Sum_probs=57.1
Q ss_pred CCCCEEECccCcCc-ccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhcc
Q 042446 276 SKLEVIQIANNSFS-GKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLS 354 (445)
Q Consensus 276 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 354 (445)
++|++|++++|.+. +..+..+..+++|++|++++|.+... ..+..+++|++|++++|.+++.+|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 34555555555554 33344444555555555555544332 2344455555555555555433333333333
Q ss_pred ccCcEEEcccCccccc-CCccccCccCCCeeeCccCcceecCC---hhhhCCCCCCeEEc
Q 042446 355 SQLQVLFLGFNQLYGS-IPSGIGNLVNLYLLAMEQNQFIGTIP---QEMGKLLNLQGLDF 410 (445)
Q Consensus 355 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l 410 (445)
+|++|++++|.+++. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++
T Consensus 89 -~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 -NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp -TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred -CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 455555555554431 12334444444444444444442222 23444444444444
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=116.74 Aligned_cols=126 Identities=25% Similarity=0.303 Sum_probs=66.8
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
++++++++.++ .+|..+ .++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666655 444332 245666666666655 45555555666666666666555444445555555555555555
Q ss_pred cCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCC
Q 042446 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNL 215 (445)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 215 (445)
.+.+..+..+..+++|++|++++|.++...+..|..+++|+.|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55544444455555555555555555533333344445555555544444
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=114.49 Aligned_cols=110 Identities=27% Similarity=0.269 Sum_probs=64.6
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSL 162 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (445)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 56677777777666444445566666777777766666544455566666666666666666444444555666666666
Q ss_pred ccccCCCCCCccCCCCCCcceEeecccccc
Q 042446 163 HKNNLTGGISPFLGNLTFLELVSLSYNSFE 192 (445)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 192 (445)
++|.+.+..+..+..+++|++|++++|.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 666555433333444555555555555444
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=113.09 Aligned_cols=127 Identities=24% Similarity=0.216 Sum_probs=59.0
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
+.++++++.++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45555555554 333222 245555555555555444444455555555555555555333333445555555555555
Q ss_pred cCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCC
Q 042446 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNL 215 (445)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 215 (445)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 54433333344444444444444444422222233344444444444433
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-14 Score=116.89 Aligned_cols=133 Identities=15% Similarity=0.183 Sum_probs=94.1
Q ss_pred cCcCCCCCCEEECccCcCcccCcccccCC-CCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChh
Q 042446 271 SLSNASKLEVIQIANNSFSGKFSVNFGGM-KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHS 349 (445)
Q Consensus 271 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 349 (445)
.+..+++|++|++++|.+... +. +..+ ++|++|++++|.+... ..+..+++|++|++++|.+++..+..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--------DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--------CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--------cccccCCCCCEEECCCCcccccCcch
Confidence 345677888888888888744 33 4444 4888888888887652 35677788888888888887443333
Q ss_pred hhhccccCcEEEcccCcccccCCc--cccCccCCCeeeCccCcceecCCh----hhhCCCCCCeEEccCCccc
Q 042446 350 ITNLSSQLQVLFLGFNQLYGSIPS--GIGNLVNLYLLAMEQNQFIGTIPQ----EMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 350 ~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~i~ 416 (445)
+..++ +|++|++++|.++ .+|. .+..+++|+.|++++|.+. .+|. .+..+++|+.|++++|...
T Consensus 84 ~~~l~-~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 84 DQALP-DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHCT-TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhcCC-CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 35555 7888888888876 4454 5677788888888888776 4554 3777788888888877765
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-15 Score=129.67 Aligned_cols=152 Identities=23% Similarity=0.348 Sum_probs=103.8
Q ss_pred CCCCEEECccCcCcccCcc------cccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChh
Q 042446 276 SKLEVIQIANNSFSGKFSV------NFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHS 349 (445)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 349 (445)
+.++.++++++.+.+..+. .+..+++|++|++++|.+... + .+..+++|+.|++++|.++ .+|..
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-------~-~~~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-------S-SLSGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-------C-CHHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-------c-ccccCCCCCEEECCCCCcc-cccch
Confidence 3444444444444433333 566777777777777776552 2 5667788888888888777 56665
Q ss_pred hhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCC-hhhhCCCCCCeEEccCCcccccccc-------
Q 042446 350 ITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIP-QEMGKLLNLQGLDFGGNHFSGKIPS------- 421 (445)
Q Consensus 350 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~------- 421 (445)
+..++ +|++|++++|.+++ +| .+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|++.+.+|.
T Consensus 89 ~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 89 DAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred hhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence 55555 78888888888874 34 57778888888888888773222 4677888888888888888765443
Q ss_pred ---cccCCCCCCeEEccCCccee
Q 042446 422 ---TLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 422 ---~l~~l~~L~~l~l~~n~~~~ 441 (445)
.+..+++|+.|+ +|+++.
T Consensus 166 ~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHhCCCcEEEC--CcccCH
Confidence 367788888875 666653
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=113.25 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=67.2
Q ss_pred CCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCC
Q 042446 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCS 330 (445)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 330 (445)
+++|++|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+..... ..+..++
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~ 88 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE------GLDQALP 88 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS------CHHHHCT
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc------chhhcCC
Confidence 5556666666665553 232222223566666666665543 445556666666666665544211 1224555
Q ss_pred CCcEEEccCCcceecCCh--hhhhccccCcEEEcccCcccccCCcc----ccCccCCCeeeCccCcce
Q 042446 331 KLRVLSFGRNQFRGVLPH--SITNLSSQLQVLFLGFNQLYGSIPSG----IGNLVNLYLLAMEQNQFI 392 (445)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~ 392 (445)
+|++|++++|.+. .++. .+..++ +|++|++++|+++ ..|.. +..+++|+.|++++|...
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~-~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLK-SLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCT-TCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCC-CCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666666554 3333 344443 5666666666655 33332 555566666666655443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-11 Score=112.39 Aligned_cols=322 Identities=11% Similarity=0.126 Sum_probs=155.4
Q ss_pred CCEEECCCCcccccCCccccCCCCCCEEECCCC---cCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 042446 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANN---SLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLS 161 (445)
Q Consensus 85 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~---~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (445)
|+.+.+... ++.....+|.++.+|+.+.+..+ .++.....+|..+.+|+.+.+..+ ++......|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 556665543 33344455566666666655443 233333445555555555554433 2223333455555555555
Q ss_pred cccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCC
Q 042446 162 LHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG 241 (445)
Q Consensus 162 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 241 (445)
+..+. .......+..+..|+.+.+..+ +......+|. ...|+.+.+..+... .....+..+..++..........
T Consensus 144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~- 218 (394)
T 4gt6_A 144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP- 218 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC-
T ss_pred cccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccc-
Confidence 54321 1122334455555555555433 2212223332 234555555432221 33334444445544443332221
Q ss_pred CCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCc
Q 042446 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMG 321 (445)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 321 (445)
.....+.. .+...............+..+.+... +......+|..+.+|+.+.+...... +.
T Consensus 219 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~----- 280 (394)
T 4gt6_A 219 AIDNVLYE-----------KSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IG----- 280 (394)
T ss_dssp BSSSCEEE-----------ECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-EC-----
T ss_pred cccceeec-----------ccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ec-----
Confidence 11111100 00000000011122334445554332 33344556777778887777554221 11
Q ss_pred ccccccCCCCCcEEEccCCcceecCCh-hhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhh
Q 042446 322 FINSLANCSKLRVLSFGRNQFRGVLPH-SITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMG 400 (445)
Q Consensus 322 ~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 400 (445)
..++..|++|+.+.+... ++ .++. ++.... +|+.+.+..+ ++.....+|.+|.+|+.+.+..+ +...-..+|.
T Consensus 281 -~~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~ 354 (394)
T 4gt6_A 281 -TGAFMNCPALQDIEFSSR-IT-ELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS 354 (394)
T ss_dssp -TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT
T ss_pred -CcccccccccccccCCCc-cc-ccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh
Confidence 124667778888887643 33 2333 333333 7888888654 44344567888899999998654 5544467888
Q ss_pred CCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcce
Q 042446 401 KLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 401 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
+|++|+.+++.++.... .++..+..|+.+++..+.+.
T Consensus 355 ~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 355 NCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred CCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 99999999998876541 35667788999888776553
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=107.49 Aligned_cols=104 Identities=26% Similarity=0.309 Sum_probs=52.0
Q ss_pred cEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccC
Q 042446 333 RVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGG 412 (445)
Q Consensus 333 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 412 (445)
++++++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 44555555444 3333221 2455555555555544444455555555555555555533334445555555555555
Q ss_pred CcccccccccccCCCCCCeEEccCCcce
Q 042446 413 NHFSGKIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 413 n~i~~~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
|++++..+..+..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555333344555555555555555544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-14 Score=123.38 Aligned_cols=143 Identities=20% Similarity=0.212 Sum_probs=113.8
Q ss_pred ccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccc
Q 042446 296 FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI 375 (445)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 375 (445)
+...+.++.++++.+.+.........++..+..+++|++|++++|.+++ +| .+..++ +|++|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchh
Confidence 3445566666666666655322222345578899999999999999985 66 677776 9999999999998 678777
Q ss_pred cCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccccc-ccccCCCCCCeEEccCCcceecCC
Q 042446 376 GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP-STLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 376 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
..+++|+.|++++|.+.+ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++.+.+|
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 888999999999999984 55 68889999999999999985432 578899999999999999977543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.35 E-value=8.1e-12 Score=103.12 Aligned_cols=103 Identities=30% Similarity=0.266 Sum_probs=66.4
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc
Q 042446 63 ALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK 142 (445)
Q Consensus 63 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~ 142 (445)
.++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 13 ~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4566666665 345444 2667777777777775556666777777777777777765555556667777777777777
Q ss_pred CcccCCccccCCCCCCEEecccccCC
Q 042446 143 LVGSIPFEFVFLYKLKGLSLHKNNLT 168 (445)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (445)
+.+..+..|..+++|++|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66444445666666666666666655
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.6e-14 Score=130.29 Aligned_cols=187 Identities=15% Similarity=0.118 Sum_probs=123.9
Q ss_pred CCCccEEEccCCcCcccCccc----Cc-CCCCCCEEECccCcCcccCcccc-cCCCCCCEEEccCCcCCCCCCCCCcccc
Q 042446 251 FPNLKFFQIDQNFFTGSIPVS----LS-NASKLEVIQIANNSFSGKFSVNF-GGMKNLSHLILQSSNLGSGESDEMGFIN 324 (445)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~----l~-~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 324 (445)
.+.|++|++++|.++...... +. ..++|++|++++|.+++.....+ ..+++|++|++++|.+++.... .+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~--~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK--DLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH--HHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH--HHHH
Confidence 567999999999887533322 22 33689999999998875444333 3456889999999988653211 1222
Q ss_pred cc-cCCCCCcEEEccCCcceecCC----hhhhhccccCcEEEcccCccccc----CCccccCccCCCeeeCccCcceec-
Q 042446 325 SL-ANCSKLRVLSFGRNQFRGVLP----HSITNLSSQLQVLFLGFNQLYGS----IPSGIGNLVNLYLLAMEQNQFIGT- 394 (445)
Q Consensus 325 ~l-~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~- 394 (445)
.+ ..+++|++|++++|.+++... ..+...+ +|++|++++|.+++. ++..+..+++|+.|++++|.++..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 23 346889999999998865322 2334444 799999999988753 244566778899999999988743
Q ss_pred ---CChhhhCCCCCCeEEccCCcccccccccccCCC--C---CCeEE--ccCCcce
Q 042446 395 ---IPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLS--S---LSEIV--LSNNNLS 440 (445)
Q Consensus 395 ---~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~--~---L~~l~--l~~n~~~ 440 (445)
+...+..+++|+.|+|++|+|++.....+..+. . |+.+. +.++.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 345556678899999999998866555543331 1 66666 5555543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-10 Score=105.83 Aligned_cols=302 Identities=11% Similarity=0.120 Sum_probs=176.8
Q ss_pred ccccCCccccCCC-CCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc---CcccCCccccCCCCCCEEecccccCCCC
Q 042446 95 IQGEIPPEFGRLF-RLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK---LVGSIPFEFVFLYKLKGLSLHKNNLTGG 170 (445)
Q Consensus 95 ~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (445)
++.....+|.++. .|+++.+..+ ++.....+|.+|.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ +...
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4444556677774 5888888764 665667788888888888887653 44344456677777777666543 2223
Q ss_pred CCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccC
Q 042446 171 ISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLN 250 (445)
Q Consensus 171 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 250 (445)
....+..+.+|+.+.+..+ +.......|.....|+.+.+..+ +.......+ ....|+.+.+..+.
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~------------ 193 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKV------------ 193 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTC------------
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccc-cccceeEEEECCcc------------
Confidence 3344566666666666543 22233445555666666665433 221112222 22345555443321
Q ss_pred CCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcc-------------cCcccccCCCCCCEEEccCCcCCCCCC
Q 042446 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSG-------------KFSVNFGGMKNLSHLILQSSNLGSGES 317 (445)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------------~~~~~l~~~~~L~~L~l~~~~~~~~~~ 317 (445)
.......+..+..++........... .....+.....+..+.+... +..+.
T Consensus 194 --------------~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~- 257 (394)
T 4gt6_A 194 --------------TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIE- 257 (394)
T ss_dssp --------------CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEEC-
T ss_pred --------------cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcc-
Confidence 11122233344444444333322111 01111223334445544321 11111
Q ss_pred CCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCCh
Q 042446 318 DEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQ 397 (445)
Q Consensus 318 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 397 (445)
..++..|..|+.+.+..+... ....++.... +|+.+.+.. .++......|.+|.+|+.+.+.++ ++..-..
T Consensus 258 -----~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 258 -----THAFDSCAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp -----TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred -----cceeeecccccEEecccccce-ecCccccccc-ccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence 125788999999999876432 3333444444 899999964 444345567889999999999765 5545568
Q ss_pred hhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcc
Q 042446 398 EMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 398 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~ 439 (445)
+|.+|++|+.+.|..+ ++.....+|.+|++|+.+++.++..
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 8999999999999765 6645567999999999999988753
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=102.03 Aligned_cols=103 Identities=23% Similarity=0.231 Sum_probs=68.4
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc
Q 042446 63 ALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK 142 (445)
Q Consensus 63 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~ 142 (445)
.++++++.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4666676664 4555443 667777777777776666667777777777777777775444455677777777777777
Q ss_pred CcccCCccccCCCCCCEEecccccCC
Q 042446 143 LVGSIPFEFVFLYKLKGLSLHKNNLT 168 (445)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (445)
+.+..+..|..+++|++|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 76444444666777777777776655
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-13 Score=129.38 Aligned_cols=187 Identities=15% Similarity=0.091 Sum_probs=118.2
Q ss_pred CCCcEEEccCCcCCCCCCcc----cccCCCCccEEEccCCcCcccCcccC-cCCCCCCEEECccCcCcccCcccc-----
Q 042446 227 SFLVNFSVSQNQIHGSLPSC----LGLNFPNLKFFQIDQNFFTGSIPVSL-SNASKLEVIQIANNSFSGKFSVNF----- 296 (445)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l----- 296 (445)
+.|+.|++++|.+....... +....++|++|++++|.+++.....+ ..+++|++|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 57888888888876322222 22224688899998888865433333 234678888999888876544444
Q ss_pred cCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC----ChhhhhccccCcEEEcccCccccc--
Q 042446 297 GGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL----PHSITNLSSQLQVLFLGFNQLYGS-- 370 (445)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-- 370 (445)
...++|++|++++|.++..... .+...+..+++|++|++++|.+.+.. ...+.... +|++|++++|.+++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA--VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAA 228 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH--HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCCHHHH
T ss_pred hcCCccceeeCCCCCCChHHHH--HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCCHHHH
Confidence 3567888999988887552211 24445567888899999888876533 23333444 788999998888753
Q ss_pred --CCccccCccCCCeeeCccCcceecCChhhhCCC-----CCCeEE--ccCCccc
Q 042446 371 --IPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLL-----NLQGLD--FGGNHFS 416 (445)
Q Consensus 371 --~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-----~L~~L~--l~~n~i~ 416 (445)
++..+..+++|+.|+|++|.+...-...+.... .|+.+. +..+.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 233445668889999988888754444443321 155665 5566554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=100.96 Aligned_cols=80 Identities=24% Similarity=0.267 Sum_probs=32.7
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
+.++++++.++ .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34444444443 3333222 34444444444444333444444444444444444444222222333344444444444
Q ss_pred cCC
Q 042446 166 NLT 168 (445)
Q Consensus 166 ~~~ 168 (445)
.+.
T Consensus 92 ~l~ 94 (174)
T 2r9u_A 92 HLK 94 (174)
T ss_dssp CCC
T ss_pred ccc
Confidence 333
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-08 Score=94.48 Aligned_cols=315 Identities=12% Similarity=0.070 Sum_probs=157.4
Q ss_pred ccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 042446 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLK 158 (445)
Q Consensus 79 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (445)
.....+|+.+.+.. .++.....+|.+|.+|+.+.+..+ ++.....+|.++ +|+.+.+..+ +......+|.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 34456788888864 355456677888888888888653 554555667776 6777766543 33233334544 3677
Q ss_pred EEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCc
Q 042446 159 GLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQ 238 (445)
Q Consensus 159 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 238 (445)
.+.+..+... .....+.++ +++.+.+..+ +.......+.....++.+.+.......... .......
T Consensus 117 ~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~-~~~~~~~---------- 182 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAE-NYVLYNK---------- 182 (379)
T ss_dssp EEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEE-TTEEEET----------
T ss_pred cccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecc-cceeccc----------
Confidence 7777654211 222233333 4555554432 222334455566666666655432210000 0000000
Q ss_pred CCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCC
Q 042446 239 IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318 (445)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 318 (445)
.......+. ....+..+.+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +..+..
T Consensus 183 -~~~~~~~~~-~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~- 256 (379)
T 4h09_A 183 -NKTILESYP-AAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS- 256 (379)
T ss_dssp -TSSEEEECC-TTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT-
T ss_pred -ccceecccc-ccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc-
Confidence 000001111 12333343333221 1122334455566666666543 23344455566666666666543 222111
Q ss_pred CCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChh
Q 042446 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQE 398 (445)
Q Consensus 319 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 398 (445)
.++..|.+|+.+.+..+ +.......+.... +|+.+.+.++.++......|.+|.+|+.+.|.++ +...-..+
T Consensus 257 -----~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 328 (379)
T 4h09_A 257 -----FLLQNCTALKTLNFYAK-VKTVPYLLCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYA 328 (379)
T ss_dssp -----TTTTTCTTCCEEEECCC-CSEECTTTTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred -----cccceeehhcccccccc-ceecccccccccc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHH
Confidence 14555666666666543 2212222233333 6777777666655444556667777777777543 44344566
Q ss_pred hhCCCCCCeEEccCCcccccccccccCCC
Q 042446 399 MGKLLNLQGLDFGGNHFSGKIPSTLGNLS 427 (445)
Q Consensus 399 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~ 427 (445)
|.+|++|+.+.+..+ ++.....+|.++.
T Consensus 329 F~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 329 FKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred hhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 777777777777554 4433345565553
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.3e-08 Score=90.85 Aligned_cols=313 Identities=12% Similarity=0.022 Sum_probs=167.0
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
.+++.+.+.. +++..-..++.++.+|+.+++..+ ++.....+|.++ +|+.+.+..+ +......+|.. .+|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 4566676653 355445567889999999999764 655666778887 6888887654 55344555665 48999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
..+... .....|..+ +|+.+.+..+ +.......+..+..++.+.+............+. ..... .
T Consensus 121 p~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~-----------~ 185 (379)
T 4h09_A 121 PGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKNK-----------T 185 (379)
T ss_dssp CTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETTS-----------S
T ss_pred CCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-ccccc-----------c
Confidence 875332 344455554 5777666543 2323445567788888887765432211000000 00000 0
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
....+.....+..+.+..... .+.......+..|+.+.+..+ +.......+..+..|+.+.+..+ ++......|..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~ 261 (379)
T 4h09_A 186 ILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQN 261 (379)
T ss_dssp EEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTT
T ss_pred eecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccce
Confidence 111112222333333222110 111111112444555554332 22223344555666666666554 33444555666
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 378 (445)
+.+|+.+.+..+ +..+. ..++.+|++|+.+.+.++.++.....++.... +|+.+.+..+ ++.....+|.+|
T Consensus 262 ~~~l~~i~l~~~-i~~i~------~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVP------YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV-KLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp CTTCCEEEECCC-CSEEC------TTTTTTCTTCCEEEECCTTCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTC
T ss_pred eehhcccccccc-ceecc------ccccccccccccccccccccceehhhhhcCCC-CCCEEEcCcc-ccEEHHHHhhCC
Confidence 666666666432 22211 12456667777777766655532333344444 6777777543 333345567788
Q ss_pred cCCCeeeCccCcceecCChhhhCCCCC
Q 042446 379 VNLYLLAMEQNQFIGTIPQEMGKLLNL 405 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~~~~~~~~~~~L 405 (445)
.+|+.+.+..+ +...-..+|.+++.+
T Consensus 333 ~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 333 KALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred CCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 88888888654 443445677666443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.05 E-value=5.1e-10 Score=103.84 Aligned_cols=103 Identities=19% Similarity=0.160 Sum_probs=60.4
Q ss_pred EEEccCC-cCCCCCCCCCcccccccCCCCCcEEEccC-CcceecCChhhhhccccCcEEEcccCcccccCCccccCccCC
Q 042446 304 HLILQSS-NLGSGESDEMGFINSLANCSKLRVLSFGR-NQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNL 381 (445)
Q Consensus 304 ~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 381 (445)
.++.+++ .+.. +|. +..+++|++|+|++ |.+.+..+..+..+. +|++|+|++|.+++..|..|..+++|
T Consensus 12 ~v~~~~~n~l~~-------ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L 82 (347)
T 2ifg_A 12 GLRCTRDGALDS-------LHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRL 82 (347)
T ss_dssp CEECCSSCCCTT-------TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred EEEcCCCCCCCc-------cCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCC
Confidence 3455555 4443 334 55666666777764 666644445555554 66666666666666555566666666
Q ss_pred CeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 382 YLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 382 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
+.|+|++|++.+..+..+..++ |+.|+|.+|++.
T Consensus 83 ~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 83 SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6666666666633333443333 666666666655
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=8.3e-10 Score=102.41 Aligned_cols=102 Identities=24% Similarity=0.181 Sum_probs=83.6
Q ss_pred EcCCC-CCcccccccccCCCCCCEEECCC-CcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc
Q 042446 65 DLMSK-ALSGSLSPHIGNLSFLREINLMD-NTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK 142 (445)
Q Consensus 65 ~l~~~-~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~ 142 (445)
+.+++ .++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|+|++|.
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44455 565 4677 88899999999996 99987777889999999999999999998888888999999999999999
Q ss_pred CcccCCccccCCCCCCEEecccccCCC
Q 042446 143 LVGSIPFEFVFLYKLKGLSLHKNNLTG 169 (445)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (445)
+.+..+..+..++ |+.|++.+|.+..
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9855555555555 9999999888763
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-10 Score=104.93 Aligned_cols=159 Identities=17% Similarity=0.225 Sum_probs=87.5
Q ss_pred CCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCccccc--CCCCCCEEEccCC--cCCCCCCCCCccccc
Q 042446 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFG--GMKNLSHLILQSS--NLGSGESDEMGFINS 325 (445)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~~~~~~~~~~~~ 325 (445)
.+|+|++|.++++.-. .++. +. +++|++|++..+.++......+. .+|+|+.|+++.+ ...... ....+...
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-DMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-CGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch-hHHHHHHH
Confidence 3677888888776311 1222 32 67888888887777654444443 6788888887532 211110 00011112
Q ss_pred c--cCCCCCcEEEccCCcceecCChhhhh--ccccCcEEEcccCccccc----CCccccCccCCCeeeCccCcceecCCh
Q 042446 326 L--ANCSKLRVLSFGRNQFRGVLPHSITN--LSSQLQVLFLGFNQLYGS----IPSGIGNLVNLYLLAMEQNQFIGTIPQ 397 (445)
Q Consensus 326 l--~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~ 397 (445)
+ ..+|+|++|.+.+|.+.+..+..+.. ..++|++|+++.|.+++. ++..+..+++|+.|++++|.++.....
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 2 34778888888777776444333332 123677777777776643 233334566777777777766543333
Q ss_pred hhhC-CCCCCeEEccCCc
Q 042446 398 EMGK-LLNLQGLDFGGNH 414 (445)
Q Consensus 398 ~~~~-~~~L~~L~l~~n~ 414 (445)
.+.. + ...++++.++
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 3332 1 2446666554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-10 Score=105.15 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=95.5
Q ss_pred CcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccc--cCCCCCcEEEccCC--cce
Q 042446 268 IPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL--ANCSKLRVLSFGRN--QFR 343 (445)
Q Consensus 268 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~--~~~ 343 (445)
+...+..+|+|+.|.+.++.-... + .+ .+++|+.|.+..+.+.. .....+ ..+|+|++|+|+.+ ...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l-~-~~-~~~~L~~L~L~~~~l~~------~~l~~l~~~~lp~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSI-G-KK-PRPNLKSLEIISGGLPD------SVVEDILGSDLPNLEKLVLYVGVEDYG 234 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBC-C-SC-BCTTCSEEEEECSBCCH------HHHHHHHHSBCTTCCEEEEECBCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCcee-c-cc-cCCCCcEEEEecCCCCh------HHHHHHHHccCCCCcEEEEeccccccc
Confidence 334556778899999887731111 1 13 37888888888777644 222223 36788888888532 111
Q ss_pred ec-----CChhhh-hccccCcEEEcccCcccccCCccc---cCccCCCeeeCccCcceec----CChhhhCCCCCCeEEc
Q 042446 344 GV-----LPHSIT-NLSSQLQVLFLGFNQLYGSIPSGI---GNLVNLYLLAMEQNQFIGT----IPQEMGKLLNLQGLDF 410 (445)
Q Consensus 344 ~~-----~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l 410 (445)
+. +...+. ...++|++|++++|.+++..+..+ ..+++|+.|+|+.|.+.+. ++..+..+++|+.|+|
T Consensus 235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 11 111111 112488888888888764332222 2477888888888877643 3334456788888888
Q ss_pred cCCcccccccccccC-CCCCCeEEccCCc
Q 042446 411 GGNHFSGKIPSTLGN-LSSLSEIVLSNNN 438 (445)
Q Consensus 411 ~~n~i~~~~~~~l~~-l~~L~~l~l~~n~ 438 (445)
++|.+++.....+.. + ..++++++++
T Consensus 315 ~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 315 KYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 888887655444443 2 3556666654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.5e-09 Score=87.74 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=66.1
Q ss_pred cccccCCCCCCEEEccCC-cCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhh----hhccccCcEEEcccCcc
Q 042446 293 SVNFGGMKNLSHLILQSS-NLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSI----TNLSSQLQVLFLGFNQL 367 (445)
Q Consensus 293 ~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~ 367 (445)
...+...+.|++|++++| .+...... .+...+..+++|++|+|++|.+.+.....+ .... +|++|++++|.+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~--~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i 105 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLK--ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFI 105 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHH--HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHH--HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcC
Confidence 344566777777777777 66542211 234455566777777777776654322222 2222 566666666666
Q ss_pred ccc----CCccccCccCCCeeeC--ccCcceec----CChhhhCCCCCCeEEccCCccc
Q 042446 368 YGS----IPSGIGNLVNLYLLAM--EQNQFIGT----IPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 368 ~~~----~~~~~~~~~~L~~L~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
++. +...+...++|+.|++ ++|.+... +...+...++|++|+|++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 532 2334444556666666 55655432 2334444556666666666554
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=6.5e-09 Score=86.76 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=55.5
Q ss_pred cccCCCCCcEEEccCC-cceecCChhh----hhccccCcEEEcccCccccc----CCccccCccCCCeeeCccCcceec-
Q 042446 325 SLANCSKLRVLSFGRN-QFRGVLPHSI----TNLSSQLQVLFLGFNQLYGS----IPSGIGNLVNLYLLAMEQNQFIGT- 394 (445)
Q Consensus 325 ~l~~~~~L~~L~l~~~-~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~- 394 (445)
.+..++.|++|++++| .+.+.....+ ... ++|++|++++|.+.+. +...+...++|+.|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3445555666666655 5543222222 222 2566666666655432 122233345566666666655422
Q ss_pred ---CChhhhCCCCCCeEEc--cCCccccc----ccccccCCCCCCeEEccCCcc
Q 042446 395 ---IPQEMGKLLNLQGLDF--GGNHFSGK----IPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 395 ---~~~~~~~~~~L~~L~l--~~n~i~~~----~~~~l~~l~~L~~l~l~~n~~ 439 (445)
+...+...++|+.|+| ++|.+++. +.+.+...++|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2344445555666666 55555533 223344445566666665554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-08 Score=81.86 Aligned_cols=83 Identities=7% Similarity=-0.002 Sum_probs=37.4
Q ss_pred CCcEEEccCCcceecCChhhhhccccCcEEEcccCc-ccccCCccccC----ccCCCeeeCccCc-ceecCChhhhCCCC
Q 042446 331 KLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQ-LYGSIPSGIGN----LVNLYLLAMEQNQ-FIGTIPQEMGKLLN 404 (445)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~n~-~~~~~~~~~~~~~~ 404 (445)
+|++|+++++.+++.....+..++ +|++|++++|. +++..-..+.. +++|++|++++|. ++..-...+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 455555555555443333333333 55555555553 44332222332 1345555555553 33222233444555
Q ss_pred CCeEEccCCc
Q 042446 405 LQGLDFGGNH 414 (445)
Q Consensus 405 L~~L~l~~n~ 414 (445)
|+.|+|++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 5555555554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.23 E-value=4.1e-07 Score=73.87 Aligned_cols=85 Identities=7% Similarity=-0.010 Sum_probs=48.0
Q ss_pred CCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCc-ceecCChhhhhc---cccCcEEEcccCc-ccccCCcc
Q 042446 300 KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQ-FRGVLPHSITNL---SSQLQVLFLGFNQ-LYGSIPSG 374 (445)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~~~~~~ 374 (445)
.+|+.|+++++.+++. -...+..|++|++|+|++|. +++.....+... .++|++|++++|. +++..-..
T Consensus 61 ~~L~~LDLs~~~Itd~------GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI------GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGG------GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHH------HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 3566677766665442 12234566667777776663 554433334332 1256677776664 66544444
Q ss_pred ccCccCCCeeeCccCc
Q 042446 375 IGNLVNLYLLAMEQNQ 390 (445)
Q Consensus 375 ~~~~~~L~~L~l~~n~ 390 (445)
+..+++|+.|++++|.
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 5566667777776665
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.22 E-value=3.4e-07 Score=80.25 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=52.7
Q ss_pred cCcEEEcccCcccc--cCCccccCccCCCeeeCccCcceecCChhhhCCC--CCCeEEccCCccccccc-------cccc
Q 042446 356 QLQVLFLGFNQLYG--SIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLL--NLQGLDFGGNHFSGKIP-------STLG 424 (445)
Q Consensus 356 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~i~~~~~-------~~l~ 424 (445)
+|++|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++.+.+| ..+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 78888888888775 3445566788888888888887743 2233333 88888888888876544 2356
Q ss_pred CCCCCCeEE
Q 042446 425 NLSSLSEIV 433 (445)
Q Consensus 425 ~l~~L~~l~ 433 (445)
.+|+|+.|+
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 778888754
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.02 E-value=5.4e-06 Score=72.57 Aligned_cols=139 Identities=19% Similarity=0.147 Sum_probs=88.4
Q ss_pred CCcceeeeEeCCCCCcEEEEEcCCC---CCccccc---------------------cc---ccCCCCCCE--EECCCCcc
Q 042446 45 HFCEWDGVTCGRRHRRVIALDLMSK---ALSGSLS---------------------PH---IGNLSFLRE--INLMDNTI 95 (445)
Q Consensus 45 ~~c~~~~~~~~~~~~~v~~l~l~~~---~~~~~~~---------------------~~---l~~l~~L~~--L~L~~~~~ 95 (445)
..|.|.|+.|...+.+|..+...+. .+.+.+. -. +...+.|+. +++..|..
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 4678899999877667765555431 1111111 01 222333443 56666633
Q ss_pred c---ccCCccccCCCCCCEEECCCCcCCC--CCCccCcCCCCCCEEEccCCcCcccCCccccCCC--CCCEEecccccCC
Q 042446 96 Q---GEIPPEFGRLFRLEALFLANNSLVG--KIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLY--KLKGLSLHKNNLT 168 (445)
Q Consensus 96 ~---~~~~~~~~~~~~L~~L~l~~~~i~~--~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~ 168 (445)
. ..+.....++++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+. ..+..+. +|++|++.+|.+.
T Consensus 156 ~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 156 SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 2 1111122468899999999999986 3456667889999999999998743 2233333 8999999999987
Q ss_pred CCCCc-------cCCCCCCcceEe
Q 042446 169 GGISP-------FLGNLTFLELVS 185 (445)
Q Consensus 169 ~~~~~-------~l~~~~~L~~L~ 185 (445)
+.++. .+..+++|+.|+
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCcchhHHHHHHHHCcccCeEC
Confidence 65542 356788888886
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=1e-05 Score=66.91 Aligned_cols=120 Identities=10% Similarity=0.076 Sum_probs=67.8
Q ss_pred cccCCCCCCEEEccCC-cCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhc---cccCcEEEcccCccccc
Q 042446 295 NFGGMKNLSHLILQSS-NLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL---SSQLQVLFLGFNQLYGS 370 (445)
Q Consensus 295 ~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~ 370 (445)
.+..-+.|++|+++++ .+.+... ..+..++...+.|++|+|++|.+.+.....+... .+.|++|+|++|.|.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga--~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERI--RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHH--HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHH--HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 3455677888888774 5543221 1344556667777777777777765433333221 13677777777777642
Q ss_pred ----CCccccCccCCCeeeCccC---ccee----cCChhhhCCCCCCeEEccCCccc
Q 042446 371 ----IPSGIGNLVNLYLLAMEQN---QFIG----TIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 371 ----~~~~~~~~~~L~~L~l~~n---~~~~----~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
+...+....+|+.|+|++| .+.. .+.+.+...++|+.|+++.|.+.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2223444556777777654 2221 23445556666777777666543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=7.6e-06 Score=67.74 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=33.6
Q ss_pred cCCCCCCEEECccC-cCccc----CcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCccee
Q 042446 273 SNASKLEVIQIANN-SFSGK----FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG 344 (445)
Q Consensus 273 ~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 344 (445)
.+.+.|++|+|+++ .+.+. +...+..-+.|+.|+|++|.+.+.... .+...+...+.|++|+|+.|.+.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~--alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR--GLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT--THHHHHHHCSSCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH--HHHHHHhcCCccCeEecCCCcCCH
Confidence 34455555555553 44322 222334445555555555555442221 333444455555555555555543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0052 Score=47.25 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=40.1
Q ss_pred EEEcccCccc-ccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 359 VLFLGFNQLY-GSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 359 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
.++.+++.++ ..+|..+. ++|+.|+|++|.+...-+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6777777775 24554332 46888888888888555566778888888888888764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.026 Score=43.24 Aligned_cols=36 Identities=28% Similarity=0.130 Sum_probs=16.4
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEecccccC
Q 042446 132 RLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNL 167 (445)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (445)
+|++|+|++|.++...+..|..+++|++|++++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344555555544433333344444455555444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 445 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-22 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-15 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-15 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-08 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-16 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-16 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-15 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-15 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 7e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 7e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.003 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 7e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 9e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.003 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 1e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.003 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 2e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.004 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 7e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 9e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.004 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 94.0 bits (232), Expect = 4e-22
Identities = 66/308 (21%), Positives = 117/308 (37%), Gaps = 14/308 (4%)
Query: 16 EGDRAALQAFKSMIAHDPQRILNSWNDSRHFCE--WDGVTC--GRRHRRVIALDLMSKAL 71
D+ AL K + + L+SW + C W GV C + RV LDL L
Sbjct: 5 PQDKQALLQIKKDLGNPTT--LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 72 SG--SLSPHIGNLSFLREINLMDNT-IQGEIPPEFGRLFRLEALFLANNSLVGKIPANLS 128
+ + NL +L + + + G IPP +L +L L++ + ++ G IP LS
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 129 YCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLEL-VSLS 187
L L N L G++P L L G++ N ++G I G+ + L +++S
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 188 YNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCL 247
N G IP + L ++ + S+ S + + +
Sbjct: 183 RNRLTGKIPPTFANLNLAFVD---LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 248 GLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLIL 307
NL + N G++P L+ L + ++ N+ G+ G ++
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY 298
Query: 308 QSSNLGSG 315
++ G
Sbjct: 299 ANNKCLCG 306
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 75.2 bits (183), Expect = 1e-15
Identities = 63/267 (23%), Positives = 98/267 (36%), Gaps = 13/267 (4%)
Query: 176 GNLTFLELVSLSYNSFEGN--IPDSLGQLKELKSLAI-GVNNLSGKIPPSICNLSFLVNF 232
+ + LS + IP SL L L L I G+NNL G IPP+I L+ L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 233 SVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKF 292
++ + G+ L N +G++P S+S+ L I N SG
Sbjct: 107 YITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 293 SVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITN 352
++G L + S N +G+ +LA R + G +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 353 LSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGG 412
+ L ++ S +L N N+ GT+PQ + +L L L+
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRN--------NRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 413 NHFSGKIPSTLGNLSSLSEIVLSNNNL 439
N+ G+IP GNL +NN
Sbjct: 278 NNLCGEIPQ-GGNLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 74.4 bits (181), Expect = 2e-15
Identities = 67/271 (24%), Positives = 109/271 (40%), Gaps = 15/271 (5%)
Query: 154 LYKLKGLSLHKNNLTGG--ISPFLGNLTFLELVSLSYN-SFEGNIPDSLGQLKELKSLAI 210
Y++ L L NL I L NL +L + + + G IP ++ +L +L L I
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 211 GVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPV 270
N+SG IP + + LV S N + G+LP + + PNL D N +G+IP
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPD 167
Query: 271 SLSNASKLEV-IQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANC 329
S + SKL + I+ N +GK F + + ++ G N+
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 330 SKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQN 389
L+F + + +L + N++YG++P G+ L L+ L + N
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRN---------NRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 390 QFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP 420
G IP + G L + N P
Sbjct: 279 NLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 65.9 bits (159), Expect = 1e-12
Identities = 53/259 (20%), Positives = 86/259 (33%), Gaps = 10/259 (3%)
Query: 189 NSFEGNIPDSLGQLKELKSLAIGVNNLSGK--IPPSICNLSFLVNFSVSQNQIHGSLPSC 246
++ G + D+ Q + +L + NL IP S+ NL +L +
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95
Query: 247 LGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLI 306
L + I +G+IP LS L + + N+ SG + + NL +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 307 LQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQ 366
+ + D G + L RN+ G +P + N
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMT-----ISRNRLTGKIPPTFAN---LNLAFVDLSRN 207
Query: 367 LYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNL 426
+ S + + ++G NL GLD N G +P L L
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 427 SSLSEIVLSNNNLSGVIPS 445
L + +S NNL G IP
Sbjct: 268 KFLHSLNVSFNNLCGEIPQ 286
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 53.6 bits (127), Expect = 1e-08
Identities = 49/219 (22%), Positives = 76/219 (34%), Gaps = 6/219 (2%)
Query: 31 HDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINL 90
L+ + + + ++ LD ALSG+L P I +L L I
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 91 MDNTIQGEIPPEFGRLFRLEA-LFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPF 149
N I G IP +G +L + ++ N L ++ + ++
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRL--TGKIPPTFANLNLAFVDLSRNMLEGDAS 214
Query: 150 EFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLA 209
K N +G L + L N G +P L QLK L SL
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 210 IGVNNLSGKIPPSICNLSFLVNFSVSQNQIH--GSLPSC 246
+ NNL G+I P NL + + N+ LP+C
Sbjct: 275 VSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 52.8 bits (125), Expect = 2e-08
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 1/124 (0%)
Query: 25 FKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSF 84
I + ++ D + + ++K +G
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLV 144
L ++L +N I G +P +L L +L ++ N+L G+IP R V + NK +
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCL 304
Query: 145 GSIP 148
P
Sbjct: 305 CGSP 308
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.6 bits (187), Expect = 4e-16
Identities = 50/268 (18%), Positives = 90/268 (33%), Gaps = 15/268 (5%)
Query: 47 CEWDGVTCGRRHRRVI---------ALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQG 97
C V C + LDL + ++ NL L + L++N I
Sbjct: 10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 98 EIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKL 157
P F L +LE L+L+ N L L V K+ S+ F + +
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV-FNGLNQMIV 128
Query: 158 KGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG 217
L + +G + + L + ++ + IP L L L + N ++
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITK 185
Query: 218 KIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASK 277
S+ L+ L +S N I L + + +P L++
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKY 243
Query: 278 LEVIQIANNSFSGKFSVNFGGMKNLSHL 305
++V+ + NN+ S S +F +
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKK 271
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.2 bits (186), Expect = 5e-16
Identities = 56/290 (19%), Positives = 98/290 (33%), Gaps = 22/290 (7%)
Query: 157 LKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216
L+ + L + L L N LK L +L + N +S
Sbjct: 12 LRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 217 GKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNAS 276
P + L L +S+NQ+ LP + L+ + + S+ L+
Sbjct: 69 KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127
Query: 277 KLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLS 336
+E+ SG + F GMK LS++ + +N+ + L L
Sbjct: 128 VVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG---------LPPSLTELH 177
Query: 337 FGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIP 396
N+ V S+ L+ L L L FN + + N +L L + N + +P
Sbjct: 178 LDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHL-NNNKLVKVP 235
Query: 397 QEMGKLLNLQGLDFGGNHFSG------KIPSTLGNLSSLSEIVLSNNNLS 440
+ +Q + N+ S P +S S + L +N +
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.1 bits (183), Expect = 1e-15
Identities = 51/272 (18%), Positives = 90/272 (33%), Gaps = 14/272 (5%)
Query: 98 EIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKL 157
++P + L L NN + + L L L NK+ P F L KL
Sbjct: 24 KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 158 KGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG 217
+ L L KN L L L + ++ + L Q+ + L SG
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSG 140
Query: 218 KIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASK 277
+ + L ++ I ++P L P+L +D N T SL +
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNN 196
Query: 278 LEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSF 337
L + ++ NS S + + +L L L ++ L + LA+ ++V+
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-------VKVPGGLADHKYIQVVYL 249
Query: 338 GRNQFRGVLPHSITNLSSQLQVLFLGFNQLYG 369
N + + + L+
Sbjct: 250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.8 bits (177), Expect = 7e-15
Identities = 52/286 (18%), Positives = 94/286 (32%), Gaps = 21/286 (7%)
Query: 157 LKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216
L L N +T NL L + L N P + L +L+ L + N L
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 217 GKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNAS 276
L L ++ S+ + LN + + +G +
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNG--LNQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 277 KLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLS 336
KL I+IA+ + + ++ G +L+ L L + + SL + L L
Sbjct: 151 KLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKI------TKVDAASLKGLNNLAKLG 201
Query: 337 FGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIG--- 393
N V + + L+ L L N+L +P G+ + + ++ + N
Sbjct: 202 LSFNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 259
Query: 394 ---TIPQEMGKLLNLQGLDFGGNH--FSGKIPSTLGNLSSLSEIVL 434
P K + G+ N + PST + + + L
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.2 bits (134), Expect = 2e-09
Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 13/179 (7%)
Query: 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326
+P L ++ + NN + +F +KNL LIL ++ + +
Sbjct: 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG------AF 75
Query: 327 ANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAM 386
A KL L +NQ + LP + +L+V ++ S+ +G+ ++ + L
Sbjct: 76 APLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134
Query: 387 EQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
+ G + L + + + IP G SL+E+ L N ++ V +
Sbjct: 135 -PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAA 189
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.8 bits (120), Expect = 1e-07
Identities = 45/230 (19%), Positives = 72/230 (31%), Gaps = 18/230 (7%)
Query: 217 GKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNAS 276
G + P C V +P L P+ + N T N
Sbjct: 1 GPVCPFRCQCHLRVVQCSDLG--LEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLK 55
Query: 277 KLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLS 336
L + + NN S F + L L L + L + L
Sbjct: 56 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE------ 109
Query: 337 FGRNQFRGVLPHSITNLSSQLQV-LFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTI 395
N+ V L+ + V L + G + L + + I TI
Sbjct: 110 ---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTI 165
Query: 396 PQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445
PQ G +L L GN + ++L L++L+++ LS N++S V
Sbjct: 166 PQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 213
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 72.7 bits (177), Expect = 1e-14
Identities = 71/394 (18%), Positives = 132/394 (33%), Gaps = 47/394 (11%)
Query: 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNS 118
+ L ++ ++S +L + + I+ L L + +NN
Sbjct: 22 AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQ 77
Query: 119 LVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPF---- 174
L P L ++L + + N++ P + L ++ +
Sbjct: 78 LTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135
Query: 175 -----------LGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI 223
+ L+ L + + L L L+ L I N +
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDISVL 193
Query: 224 CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQI 283
L+ L + + NQI P NL ++ N +L++ + L + +
Sbjct: 194 AKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248
Query: 284 ANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR 343
ANN S G+ L+ L L ++ + + I+ LA + L L NQ
Sbjct: 249 ANNQISN--LAPLSGLTKLTELKLGANQISN--------ISPLAGLTALTNLELNENQLE 298
Query: 344 GVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLL 403
S + L L L FN + P + +L L L N+ + + L
Sbjct: 299 ---DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLT 351
Query: 404 NLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437
N+ L G N S P L NL+ ++++ L++
Sbjct: 352 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 72.3 bits (176), Expect = 2e-14
Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 32/218 (14%)
Query: 40 WNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEI 99
+ ++ + + +L + +S I + L E++L N ++
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD-- 233
Query: 100 PPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFE--------- 150
L L L LANN + P LS ++LT L LG N++ P
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE 291
Query: 151 -----------FVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSL 199
L L L+L+ NN++ + +LT L+ + + N SL
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSL 347
Query: 200 GQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQN 237
L + L+ G N +S P + NL+ + ++
Sbjct: 348 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 58.9 bits (141), Expect = 4e-10
Identities = 53/334 (15%), Positives = 110/334 (32%), Gaps = 33/334 (9%)
Query: 131 SRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNS 190
+ LG+ + ++ L ++ L + + + L L ++ S N
Sbjct: 22 AEKMKTVLGKTNVTDTVSQTD--LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQ 77
Query: 191 FEGNIP-DSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGL 249
P +L +L ++ + +++ + L N ++ +L + L
Sbjct: 78 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137
Query: 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNF-GGMKNLSHLILQ 308
+ I S+ ++ +AN + + ++ L
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197
Query: 309 SSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLY 368
+ ++++ I L + L LS NQ + ++ +L++ L L L NQ+
Sbjct: 198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTN-LTDLDLANNQIS 254
Query: 369 GSIPSGIGNLVNLYLLAMEQNQFIGTIP--------------------QEMGKLLNLQGL 408
P + L L L + NQ P + L NL L
Sbjct: 255 NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312
Query: 409 DFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442
N+ S P + +L+ L + +NN +S V
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSDV 344
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 45.8 bits (107), Expect = 7e-06
Identities = 52/257 (20%), Positives = 93/257 (36%), Gaps = 21/257 (8%)
Query: 195 IPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGL-NFPN 253
D+ L E +G N++ + + +L + + I S G+ N
Sbjct: 16 FTDT--ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK----SIDGVEYLNN 67
Query: 254 LKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSG------KFSVNFGGMKNLSHLIL 307
L N T P L N +KL I + NN + ++ + N +
Sbjct: 68 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 125
Query: 308 QSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQL 367
+ + N++++ S L L+ + G + L++ + L +
Sbjct: 126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185
Query: 368 YGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLS 427
S S + L NL L NQ P + NL L GN TL +L+
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLT 241
Query: 428 SLSEIVLSNNNLSGVIP 444
+L+++ L+NN +S + P
Sbjct: 242 NLTDLDLANNQISNLAP 258
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.3 bits (165), Expect = 2e-13
Identities = 44/200 (22%), Positives = 69/200 (34%), Gaps = 5/200 (2%)
Query: 91 MDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFE 150
+ ++ P F L RL L L L P + L L L N L
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 151 FVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAI 210
F L L L LH N ++ L L+ + L N P + L L +L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 211 GVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPV 270
NNLS ++ L L ++ N + L+ F+ + S+P
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLPQ 266
Query: 271 SLSNASKLEVIQIANNSFSG 290
L+ ++ ++A N G
Sbjct: 267 RLAG---RDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 7e-13
Identities = 41/262 (15%), Positives = 78/262 (29%), Gaps = 11/262 (4%)
Query: 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243
S + +P + + + + N +S S L + N +
Sbjct: 16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303
+ + D P + +L + + F G+ L
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLG 363
+L LQ + L + D + + L L N+ V + L S L L L
Sbjct: 133 YLYLQDNALQALPDD------TFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLH 185
Query: 364 FNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTL 423
N++ P +L L L + N + + L LQ L N + +
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-R 244
Query: 424 GNLSSLSEIVLSNNNLSGVIPS 445
+ L + S++ + +P
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLPQ 266
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (150), Expect = 2e-11
Identities = 50/273 (18%), Positives = 89/273 (32%), Gaps = 15/273 (5%)
Query: 98 EIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKL 157
+P + +FL N + A+ C LT+L L N L F L L
Sbjct: 25 AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 158 KGLSLHKNNLTGGISP-FLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216
+ L L N + P L L + L + P L L+ L + N L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 217 GKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNAS 276
+ +L L + + N+I +P +L + QN P + +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 277 KLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLS 336
+L + + N+ S + ++ L +L L + + + + L+
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW-------VCDCRARPLWAWLQKFR 254
Query: 337 FGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYG 369
++ LP + + L N L G
Sbjct: 255 GSSSEVPCSLPQRLAGRD----LKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (145), Expect = 7e-11
Identities = 48/231 (20%), Positives = 79/231 (34%), Gaps = 6/231 (2%)
Query: 37 LNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSP-HIGNLSFLREINLMDNTI 95
L + + LDL A S+ P L L ++L +
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 96 QGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLY 155
Q P F L L+ L+L +N+L LT L L N++ F L+
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177
Query: 156 KLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNL 215
L L LH+N + +L L + L N+ ++L L+ L+ L + N
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
Query: 216 SGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG 266
+ ++L F S +++ SLP ++ N G
Sbjct: 238 VC-DCRARPLWAWLQKFRGSSSEVPCSLPQ----RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 3e-09
Identities = 36/262 (13%), Positives = 68/262 (25%), Gaps = 37/262 (14%)
Query: 157 LKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI--------------------- 195
+ + LH N ++ + L ++ L N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 196 ----PDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNF 251
P + L L +L + L P L+ L + N + +
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR-DL 152
Query: 252 PNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSN 311
NL + N + + L+ + + N + F L +
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF------RDLGRLMTL 206
Query: 312 LGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSI 371
+ +LA L+ L N + L + LQ +++ S+
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVC--DCRARPLWAWLQKFRGSSSEVPCSL 264
Query: 372 PSGIGNLVNLYLLAMEQNQFIG 393
P L L + N G
Sbjct: 265 PQ---RLAGRDLKRLAANDLQG 283
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 2e-07
Identities = 31/218 (14%), Positives = 60/218 (27%), Gaps = 15/218 (6%)
Query: 222 SICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVI 281
+ ++ + + + + +LP L + + +N +L ++L +
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 282 QIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQ 341
+ L L + +++ + L +
Sbjct: 61 -----NLDRAELTKLQVDGTLPVLGTLDLS-----HNQLQSLPLLGQTLPALTVLDVSFN 110
Query: 342 FRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGK 401
LP +LQ L+L N+L P + L L++ N +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 402 LLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNL 439
L NL L N IP L L N
Sbjct: 171 LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (112), Expect = 1e-06
Identities = 40/211 (18%), Positives = 74/211 (35%), Gaps = 8/211 (3%)
Query: 78 HIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLS 137
+ ++ E+N + +PP+ + L L+ N L A L +RLT L+
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 138 LGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPD 197
L + + + + G +N + L L ++ +S+N
Sbjct: 62 LDRAE---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 198 SLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFF 257
+L L EL+ L + N L P + L S++ N + L NL
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTL 177
Query: 258 QIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288
+ +N +IP + L + N +
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 4e-05
Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 15/217 (6%)
Query: 176 GNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVS 235
+ V+ + +P L K+ L + N L ++ + L ++
Sbjct: 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 236 QNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVN 295
+ ++ P L + N + + + + N S
Sbjct: 64 RAELTKLQVDG---TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 296 FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS 355
G + + + N + + L +
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS-------LANNNLTELPAGLLNGLEN 173
Query: 356 QLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI 392
L L L N LY +IP G L + N ++
Sbjct: 174 -LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.003
Identities = 36/187 (19%), Positives = 57/187 (30%), Gaps = 11/187 (5%)
Query: 157 LKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216
L L +N L L T L ++L D L L +L + N L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ 90
Query: 217 GKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNAS 276
+ SLP L+ + N P L+
Sbjct: 91 SLPLLGQTL--PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 277 KLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLS 336
KLE + +ANN+ + + G++NL L+LQ ++L + L
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-------IPKGFFGSHLLPFAF 201
Query: 337 FGRNQFR 343
N +
Sbjct: 202 LHGNPWL 208
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 46.0 bits (107), Expect = 6e-06
Identities = 45/316 (14%), Positives = 94/316 (29%), Gaps = 16/316 (5%)
Query: 130 CSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYN 189
+ L L L S+P L+ L N+LT + +L L + + +
Sbjct: 37 DRQAHELELNNLGL-SSLPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLK 91
Query: 190 SFEGNIP--DSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCL 247
+ P + LG + N S + N S + + + +
Sbjct: 92 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151
Query: 248 GLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLIL 307
P L+ + + + L + I + + + L+ +
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211
Query: 308 QSSNLGSGESDEMGFINS-LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQ 366
++ L + + + + ++ + +I + S+L N
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271
Query: 367 LYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNL 426
I S +L L + N+ + +P L+ L NH + ++P NL
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNK-LIELPALPP---RLERLIASFNHLA-EVPELPQNL 326
Query: 427 SSLSEIVLSNNNLSGV 442
L + N L
Sbjct: 327 KQLH---VEYNPLREF 339
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 113 FLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGIS 172
N+ +I + L L++ NKL+ +P +L+ L N+L +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVP 320
Query: 173 PFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELK 206
NL L + YN PD +++L+
Sbjct: 321 ELPQNLKQL---HVEYNPLRE-FPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 44.4 bits (103), Expect = 1e-05
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 328 NCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAME 387
L L+ N+ LP L + L FN L +P NL L++ E
Sbjct: 282 LPPSLEELNVSNNKLIE-LPALPPRL----ERLIASFNHL-AEVPELPQNLKQLHV---E 332
Query: 388 QNQFIGTIPQEMGKLLNLQ 406
N + P + +L+
Sbjct: 333 YNP-LREFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.3 bits (100), Expect = 4e-05
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSL 199
N I L+ L++ N L + L L S+N +P+
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELP 323
Query: 200 GQLKELKSLAIGVNNLSGKIPPSICNLSFL 229
LK+L + N L + P ++ L
Sbjct: 324 QNLKQLH---VEYNPLR-EFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.0 bits (89), Expect = 7e-04
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 16/99 (16%)
Query: 285 NNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG 344
N+ S + +L L + ++ L A +L L N
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELP----------ALPPRLERLIASFNHLA- 317
Query: 345 VLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYL 383
+ L L+ L + +N L P ++ +L +
Sbjct: 318 ----EVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.7 bits (92), Expect = 9e-05
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 7/111 (6%)
Query: 333 RVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI 392
RVL + L + L L N+L P+ + L L + ++ +
Sbjct: 1 RVLHLAHKDLTV--LCHLEQLL-LVTHLDLSHNRLRALPPA-LAALRCLEV--LQASDNA 54
Query: 393 GTIPQEMGKLLNLQGLDFGGNHF-SGKIPSTLGNLSSLSEIVLSNNNLSGV 442
+ L LQ L N L + L + L N+L
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.5 bits (81), Expect = 0.003
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123
L L K L+ H+ L + ++L N ++ +PP L LE L + +
Sbjct: 3 LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLE--VLQASDNALEN 57
Query: 124 PANLSYCSRLTVLSLGQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTG 169
++ RL L L N+L + V +L L+L N+L
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 41/277 (14%), Positives = 86/277 (31%), Gaps = 14/277 (5%)
Query: 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKI 219
L L NL ++ L + + + + + + + ++ + + + +
Sbjct: 5 LDLTGKNLHPDVTGRLLSQGVIAF-RCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62
Query: 220 PPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK--FFQIDQNFFTGSIPVSLSNAS 276
I S L N S+ ++ + + L NL F ++ LS+ S
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 277 KLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLS 336
+L+ + ++ + V + + + + + C L L
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181
Query: 337 FGRNQFRGVLPHSITNLSSQLQVLFL-GFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTI 395
+ + LQ L L + +G + L L Q G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL-----QVFGIV 236
Query: 396 PQEMGKLL--NLQGLDFGGNHFSGKIPSTLGNLSSLS 430
P +LL L L +HF+ T+GN +
Sbjct: 237 PDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQE 273
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 40/249 (16%), Positives = 81/249 (32%), Gaps = 12/249 (4%)
Query: 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGK- 122
LDL K L ++ + + + + + + F FR++ + L+N+ +
Sbjct: 5 LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVST 62
Query: 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLE 182
+ LS CS+L LSL +L I L L+L + + +
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 183 LVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG--------KIPPSICNLSFLVNFSV 234
L L+ + + S I NLSG + + LV+ +
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 235 SQNQIHGSLPSCLGLNFPNLKFFQIDQ-NFFTGSIPVSLSNASKLEVIQIANNSFSGKFS 293
S + + + L+ + + + L L+ +Q+ G
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
Query: 294 VNFGGMKNL 302
+ + +L
Sbjct: 243 LLKEALPHL 251
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 1e-04
Identities = 17/146 (11%), Positives = 37/146 (25%), Gaps = 3/146 (2%)
Query: 130 CSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFL-GNLTFLELVSLSY 188
+ L ++ + L L + + L L +++
Sbjct: 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65
Query: 189 NSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLG 248
+ PD+ L L + N L + L +S N +H S
Sbjct: 66 SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124
Query: 249 LNFPNLKFFQIDQNFFTGSIPVSLSN 274
+ + + L++
Sbjct: 125 QRWEEEGLGGVPEQKLQCHGQGPLAH 150
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 16/219 (7%)
Query: 225 NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIA 284
L+ + + ++ + ++ + + T +I + + L +++
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELK 71
Query: 285 NNSF-SGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR 343
+N N + L N+ + + L + V
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 344 GVLPHSITNLSSQLQVLFLGFNQLY------GSIPSGIGNLVNLYLLAMEQNQFIGTIPQ 397
VL + +++ + L Q S + + NL L L + N+ P
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190
Query: 398 EMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSN 436
+ L NL + N S P L N S+L + L+N
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.002
Identities = 30/202 (14%), Positives = 58/202 (28%), Gaps = 13/202 (6%)
Query: 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQS 309
N ++ T V+ ++ + + + + NL L L+
Sbjct: 17 ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72
Query: 310 SNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYG 369
+ + + + S + + + + V L
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 370 SIPSGIGNLVNLYLLAMEQNQFIG-------TIPQEMGKLLNLQGLDFGGNHFSGKIPST 422
+ + + N+ LA N + + L L L N S P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 423 LGNLSSLSEIVLSNNNLSGVIP 444
L +L +L E+ L NN +S V P
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP 212
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 36.5 bits (83), Expect = 0.003
Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 28/224 (12%)
Query: 131 SRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNS 190
+ ++ G++ + ++ L + LS +T + L L + L N
Sbjct: 19 ANAIKIAAGKSNVTDTVTQAD--LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQ 74
Query: 191 FEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLN 250
P L+ I + + + + + S L +
Sbjct: 75 ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134
Query: 251 FPNLKFFQIDQNFFTG-------------SIPVSLSNASKLEVIQIANNSFSGKFSVNFG 297
+ +L S L+N SKL ++ +N S
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLA 192
Query: 298 GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQ 341
+ NL + L+++ + ++ LAN S L +++ NQ
Sbjct: 193 SLPNLIEVHLKNNQISD--------VSPLANTSNLFIVTL-TNQ 227
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 7/137 (5%)
Query: 76 SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTV 135
+ N RE++L I I L + +A+ ++N + + RL
Sbjct: 11 AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67
Query: 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG----GISPFLGNLTFLELVSLSYNSF 191
L + N++ L L L L N+L L +LT+L ++ +
Sbjct: 68 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127
Query: 192 EGNIPDSLGQLKELKSL 208
+ + ++ +++ L
Sbjct: 128 KHYRLYVIYKVPQVRVL 144
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.004
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 4/77 (5%)
Query: 323 INSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLY 382
N + R L + V+ + L Q + N++ G L L
Sbjct: 11 AAQYTNAVRDRELDLRGYKIP-VIENLGATL-DQFDAIDFSDNEIR--KLDGFPLLRRLK 66
Query: 383 LLAMEQNQFIGTIPQEM 399
L + N+
Sbjct: 67 TLLVNNNRICRIGEGLD 83
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 4e-04
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 85 LREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSL----VGKIPANLSYCSRLTVLSLG 139
++ +++ + E L + + + L + L I + L L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTG 169
N+L + + + K +L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 4e-04
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 124 PANLSYCSRLTVLSLGQNKL----VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLG--- 176
S L VL L + S+ + + L+ L L N L L
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 177 --NLTFLELVSLSYNSFEGNIPDSLGQLKELK 206
LE + L + + D L L++ K
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.002
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 5/98 (5%)
Query: 133 LTVLSLGQNKLVGSIPFEFV-FLYKLKGLSLHKNNLTG----GISPFLGNLTFLELVSLS 187
+ L + +L + E + L + + + L LT IS L L ++L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 188 YNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICN 225
N + Q + S I +L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (83), Expect = 0.004
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 379 VNLYLLAMEQNQFIGTIPQEMGKLL-NLQGLDFGGNHFSGK----IPSTLGNLSSLSEIV 433
+++ L ++ + E+ LL Q + + I S L +L+E+
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 434 LSNNNLSGVIPS 445
L +N L V
Sbjct: 62 LRSNELGDVGVH 73
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.1 bits (89), Expect = 7e-04
Identities = 35/312 (11%), Positives = 85/312 (27%), Gaps = 29/312 (9%)
Query: 157 LKGLSLHKNNLTG----GISPFLGNLTFLELVSLSYNSFEGN----IPDSLGQLKELKSL 208
++G SL + +T + L ++ + LS N+ + +++ K+L+
Sbjct: 5 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64
Query: 209 AIGVN---NLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFT 265
+ +IP ++ L + + + S + + ++
Sbjct: 65 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP-TAQEPLIDFLSKHTPL 123
Query: 266 GSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSG------ESDE 319
+ + + +IA + L +I + L +G ++ +
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183
Query: 320 MGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLV 379
+ + + G L + ++ + +
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243
Query: 380 NLYLLAMEQNQFIGTIPQEMGKLL------NLQGLDFGGNHFSGKIPSTL-----GNLSS 428
NL L + + LQ L N TL +
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303
Query: 429 LSEIVLSNNNLS 440
L + L+ N S
Sbjct: 304 LLFLELNGNRFS 315
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 9e-04
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 386 MEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444
+ N + +P ++ LD L NL L S NL +P
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL--RARSTYNLK-KLP 239
Query: 445 S 445
+
Sbjct: 240 T 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (82), Expect = 0.004
Identities = 28/235 (11%), Positives = 74/235 (31%), Gaps = 7/235 (2%)
Query: 158 KGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG 217
+ ++ +T S N L + +L+ + I N++
Sbjct: 11 RVFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67
Query: 218 KIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASK 277
I + + ++ + + + + + N +P + K
Sbjct: 68 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP----DVHK 123
Query: 278 LEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSF 337
+ +Q +++ + L +S L ++ N N ++L L+
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183
Query: 338 GRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI 392
N LP+ + + +S +L + +++ G+ NL L + + +
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 445 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.9 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.79 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.75 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.73 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.7 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.7 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.66 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.62 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.6 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.58 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.51 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.47 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.45 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.43 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.43 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.28 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.17 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.13 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.11 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.32 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.1 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.08 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.0 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.76 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.65 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=1.2e-35 Score=271.46 Aligned_cols=292 Identities=25% Similarity=0.431 Sum_probs=220.4
Q ss_pred cChhhHHHHHHHHHhccCCCCCCCCCCCCCCCCcc--eeeeEeCCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCE
Q 042446 14 FEEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCE--WDGVTCGRRH--RRVIALDLMSKALSG--SLSPHIGNLSFLRE 87 (445)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~~~~c~--~~~~~~~~~~--~~v~~l~l~~~~~~~--~~~~~l~~l~~L~~ 87 (445)
..+++++|+.+||+.+. +|. .++.|..+.+||. |.||+|+... .||+.++++++.+.+ .+|..++++++|++
T Consensus 3 c~~~e~~aLl~~k~~~~-~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~ 80 (313)
T d1ogqa_ 3 CNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp SCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCHHHHHHHHHHHHHCC-CCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence 45788999999999986 443 5789998899994 9999998754 489999999999987 47888999999999
Q ss_pred EECCC-CcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccccc
Q 042446 88 INLMD-NTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNN 166 (445)
Q Consensus 88 L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (445)
|+|++ |.+.+.+|.+++++++|++|++++|.+.+..+..+..+.+|+++++++|.+...+|..+.++++++++++++|.
T Consensus 81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~ 160 (313)
T d1ogqa_ 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence 99986 78888889899999999999999999888788888888999999999888887888888888888888888888
Q ss_pred CCCCCCccCCCCCCc-ceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCc
Q 042446 167 LTGGISPFLGNLTFL-ELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS 245 (445)
Q Consensus 167 ~~~~~~~~l~~~~~L-~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 245 (445)
+.+.+|..+..+..+ +.+.+++|.+++..+..+.++..+ .+++..+...+..+..+..++.++.+++.++.+.+.++.
T Consensus 161 l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~ 239 (313)
T d1ogqa_ 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 887777777777665 677788888777777666655443 577777777766777777777777777777766644332
Q ss_pred ccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCc
Q 042446 246 CLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSN 311 (445)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 311 (445)
+.. +++|+.|++++|++++.+|..+.++++|++|+|++|++++..|. ++.+++|+.+.+++|+
T Consensus 240 -~~~-~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 240 -VGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp -CCC-CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred -ccc-ccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 222 56666666666666666666666666666666666666554442 3444444444444443
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=1.3e-26 Score=217.30 Aligned_cols=341 Identities=23% Similarity=0.299 Sum_probs=241.6
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..+++++++++.++. + +++..+++|++|++++|.++ .++ .++++++|++|++++|.+.+. + .+..+++|+.|++
T Consensus 44 ~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~-~l~-~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~ 117 (384)
T d2omza2 44 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DIT-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTL 117 (384)
T ss_dssp TTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCC-CCc-cccCCcccccccccccccccc-c-ccccccccccccc
Confidence 457778888777764 2 45677788888888888776 333 377788888888888877743 2 3677788888888
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
+++.+.+..+ ......+.......+.+..................... .....+.............+.. .
T Consensus 118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~ 188 (384)
T d2omza2 118 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKV--S 188 (384)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCC--C
T ss_pred cccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhhhcccccccccccccccc--c
Confidence 7776653222 33445566666666555432222111111121111111 1123344445555555555444 3
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
.......++.++.++++.|.+.+..+. . .+++|++|++++|.+++ ...+..+++|+.+++++|.+++.. .+..
T Consensus 189 ~~~~~~~l~~~~~l~l~~n~i~~~~~~--~-~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~ 261 (384)
T d2omza2 189 DISVLAKLTNLESLIATNNQISDITPL--G-ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSG 261 (384)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCGGG--G-GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTT
T ss_pred cccccccccccceeeccCCccCCCCcc--c-ccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccc
Confidence 455667788999999999988754332 2 27899999999999875 346788899999999999987544 4788
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 378 (445)
+++|++|+++++++.... .+..++.++.+.++.|.+.+ ...+.... ++++|++++|++++. + .+..+
T Consensus 262 ~~~L~~L~l~~~~l~~~~--------~~~~~~~l~~l~~~~n~l~~--~~~~~~~~-~l~~L~ls~n~l~~l-~-~l~~l 328 (384)
T d2omza2 262 LTKLTELKLGANQISNIS--------PLAGLTALTNLELNENQLED--ISPISNLK-NLTYLTLYFNNISDI-S-PVSSL 328 (384)
T ss_dssp CTTCSEEECCSSCCCCCG--------GGTTCTTCSEEECCSSCCSC--CGGGGGCT-TCSEEECCSSCCSCC-G-GGGGC
T ss_pred cccCCEeeccCcccCCCC--------cccccccccccccccccccc--ccccchhc-ccCeEECCCCCCCCC-c-ccccC
Confidence 999999999999886532 46788899999999998874 23355555 899999999999853 2 37889
Q ss_pred cCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCc
Q 042446 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNN 438 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~ 438 (445)
++|++|++++|+++ .++ .+..+++|+.|++++|++++..| +.++++|++|+|++|.
T Consensus 329 ~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 329 TKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384 (384)
T ss_dssp TTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred CCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence 99999999999987 444 58899999999999999996554 8899999999999983
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.95 E-value=6.2e-28 Score=219.81 Aligned_cols=254 Identities=28% Similarity=0.429 Sum_probs=181.7
Q ss_pred CcceEeeccccccc--ccCcccCCCCCCCEEEccC-CCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccE
Q 042446 180 FLELVSLSYNSFEG--NIPDSLGQLKELKSLAIGV-NNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKF 256 (445)
Q Consensus 180 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 256 (445)
+++.|+++++.+.+ .+|..++++++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+..+..+.. .+.|+.
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~-~~~L~~ 129 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccc-hhhhcc
Confidence 45555665555543 3455666666666666654 5555566666666666666666666665444444433 666666
Q ss_pred EEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCC-CEEEccCCcCCCCCCCCCcccccccCCCCCcEE
Q 042446 257 FQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNL-SHLILQSSNLGSGESDEMGFINSLANCSKLRVL 335 (445)
Q Consensus 257 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 335 (445)
+++++|.+.+.+|..+.+++.++.+++++|.+.+..+..+..+..+ +.+.+++|++... .+..+..+. ...+
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~------~~~~~~~l~-~~~l 202 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK------IPPTFANLN-LAFV 202 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE------CCGGGGGCC-CSEE
T ss_pred cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccc------ccccccccc-cccc
Confidence 6666666666666677777777777777777776666666666665 6777777776552 223344443 4568
Q ss_pred EccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcc
Q 042446 336 SFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHF 415 (445)
Q Consensus 336 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i 415 (445)
+++.+...+.++..+.... ++++++++++.+.+.. ..+..+++|+.|++++|++++.+|..++.+++|+.|+|++|++
T Consensus 203 ~l~~~~~~~~~~~~~~~~~-~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l 280 (313)
T d1ogqa_ 203 DLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp ECCSSEEEECCGGGCCTTS-CCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ccccccccccccccccccc-cccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence 8888888877777776666 8999999999988654 4577889999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCeEEccCCc-ceec-CC
Q 042446 416 SGKIPSTLGNLSSLSEIVLSNNN-LSGV-IP 444 (445)
Q Consensus 416 ~~~~~~~l~~l~~L~~l~l~~n~-~~~~-~p 444 (445)
+|.+|+ +.++++|+.+++++|+ ++|. +|
T Consensus 281 ~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp 310 (313)
T d1ogqa_ 281 CGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp EEECCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred cccCCC-cccCCCCCHHHhCCCccccCCCCC
Confidence 988885 5778899999999998 6665 45
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=5.6e-25 Score=206.13 Aligned_cols=341 Identities=26% Similarity=0.315 Sum_probs=245.8
Q ss_pred EcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCc
Q 042446 65 DLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLV 144 (445)
Q Consensus 65 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~ 144 (445)
.+....+++.+. ...+.+|++|+++++.++ .+ +.+..+++|++|++++|.+++ ++ .++++++|++|++++|++.
T Consensus 28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~-~l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~ 101 (384)
T d2omza2 28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIA 101 (384)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECCSSCCC-CC-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred HhCCCCCCCccC--HHHhCCCCEEECCCCCCC-Cc-cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccc
Confidence 344444544433 245678999999999887 34 357789999999999999984 44 3889999999999999887
Q ss_pred ccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCc
Q 042446 145 GSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSIC 224 (445)
Q Consensus 145 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 224 (445)
+. + .++.+++|+.++++++.+.+..+ ......+.......+.+......... ...+........ .....+.
T Consensus 102 ~i-~-~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~ 172 (384)
T d2omza2 102 DI-T-PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGL--TSLQQLSFGNQV---TDLKPLA 172 (384)
T ss_dssp CC-G-GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTC--TTCSEEEEEESC---CCCGGGT
T ss_pred cc-c-ccccccccccccccccccccccc--cccccccccccccccccccccccccc--cccccccccccc---chhhhhc
Confidence 43 3 37889999999999888774332 33455666777666655432222111 222222221111 1223344
Q ss_pred CCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCE
Q 042446 225 NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSH 304 (445)
Q Consensus 225 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 304 (445)
............+... ...... .+++++.+++++|.+++..+ ...+++|++|++++|.+++. ..+..+++|+.
T Consensus 173 ~~~~~~~~~~~~~~~~--~~~~~~-~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 245 (384)
T d2omza2 173 NLTTLERLDISSNKVS--DISVLA-KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTD 245 (384)
T ss_dssp TCTTCCEEECCSSCCC--CCGGGG-GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred cccccccccccccccc--cccccc-cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccch
Confidence 4555555555555432 233333 38999999999999886433 45678999999999998753 35788999999
Q ss_pred EEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCee
Q 042446 305 LILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLL 384 (445)
Q Consensus 305 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 384 (445)
+++++|.+.... .+..+++|++|+++++.+++. + .+.... .++.++++.|.+++ ...+..+++++.|
T Consensus 246 L~l~~n~l~~~~--------~~~~~~~L~~L~l~~~~l~~~-~-~~~~~~-~l~~l~~~~n~l~~--~~~~~~~~~l~~L 312 (384)
T d2omza2 246 LDLANNQISNLA--------PLSGLTKLTELKLGANQISNI-S-PLAGLT-ALTNLELNENQLED--ISPISNLKNLTYL 312 (384)
T ss_dssp EECCSSCCCCCG--------GGTTCTTCSEEECCSSCCCCC-G-GGTTCT-TCSEEECCSSCCSC--CGGGGGCTTCSEE
T ss_pred hccccCccCCCC--------cccccccCCEeeccCcccCCC-C-cccccc-cccccccccccccc--ccccchhcccCeE
Confidence 999999886632 467889999999999998743 2 344555 89999999999874 3457888999999
Q ss_pred eCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 385 AMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 385 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
++++|++.+ ++ .+..+++|+.|++++|++++ ++ .+.++++|++|++++|++++..|
T Consensus 313 ~ls~n~l~~-l~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~ 368 (384)
T d2omza2 313 TLYFNNISD-IS-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP 368 (384)
T ss_dssp ECCSSCCSC-CG-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred ECCCCCCCC-Cc-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh
Confidence 999999984 33 37889999999999999984 44 58899999999999999998543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=5.6e-24 Score=192.66 Aligned_cols=249 Identities=22% Similarity=0.297 Sum_probs=140.6
Q ss_pred CCCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCC
Q 042446 43 SRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGK 122 (445)
Q Consensus 43 ~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 122 (445)
....|.|..+.|.. ..++ .+|..+. +.+++|++++|.++...+.+|.++++|++|++++|.+...
T Consensus 6 ~~c~c~~~~~~C~~------------~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i 70 (305)
T d1xkua_ 6 FRCQCHLRVVQCSD------------LGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70 (305)
T ss_dssp TTCEEETTEEECTT------------SCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB
T ss_pred CCCEecCCEEEecC------------CCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc
Confidence 33456777777754 3343 3455443 5788899988888854455788888888888888888876
Q ss_pred CCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccc--cccCcccC
Q 042446 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFE--GNIPDSLG 200 (445)
Q Consensus 123 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~l~ 200 (445)
.|..|..+++|++|++++|++. .+|..+ ...++.|...+|.+....+..+.....+..+....+... ...+..+.
T Consensus 71 ~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~ 147 (305)
T d1xkua_ 71 SPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147 (305)
T ss_dssp CTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG
T ss_pred chhhhhCCCccCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccc
Confidence 6778888888888888888887 455432 356777777777666444444445555666665554322 12233445
Q ss_pred CCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCE
Q 042446 201 QLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEV 280 (445)
Q Consensus 201 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (445)
.+++|+.+++++|.+. .++..+ +++|++|++++|...+..+..+.. ++.++.|.+++|.+.+..+.++..+++|++
T Consensus 148 ~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~ 223 (305)
T d1xkua_ 148 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRE 223 (305)
T ss_dssp GCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred cccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhc-ccccccccccccccccccccccccccccee
Confidence 5555666666555554 233221 344555555554444333332222 444444444444444433444444444444
Q ss_pred EECccCcCcccCcccccCCCCCCEEEccCCcCCC
Q 042446 281 IQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGS 314 (445)
Q Consensus 281 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 314 (445)
|++++|.++. .+..+..+++|+.|++++|+++.
T Consensus 224 L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~ 256 (305)
T d1xkua_ 224 LHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 256 (305)
T ss_dssp EECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCC
T ss_pred eecccccccc-cccccccccCCCEEECCCCccCc
Confidence 4444444432 23334444444444444444443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=6.7e-24 Score=192.17 Aligned_cols=246 Identities=22% Similarity=0.260 Sum_probs=131.1
Q ss_pred CcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEc
Q 042446 180 FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQI 259 (445)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 259 (445)
++++|++++|.++...+.+|.++++|++|++++|.+....+..+..++.|+.+++++|++. .+|... .+.++.|++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~---~~~l~~L~~ 107 (305)
T d1xkua_ 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELRV 107 (305)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEEEC
T ss_pred CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch---hhhhhhhhc
Confidence 3444444444444222223444444444444444444333344444444444444444443 333222 334555555
Q ss_pred cCCcCcccCcccCcCCCCCCEEECccCcC--cccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEc
Q 042446 260 DQNFFTGSIPVSLSNASKLEVIQIANNSF--SGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSF 337 (445)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 337 (445)
.++.+.+..+..+.....+..+....+.. .......+..+++|+.+++++|.+..... ..+++|++|++
T Consensus 108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~---------~~~~~L~~L~l 178 (305)
T d1xkua_ 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---------GLPPSLTELHL 178 (305)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---------SCCTTCSEEEC
T ss_pred cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc---------ccCCccCEEEC
Confidence 55555443333344455555555555532 22233445556666666666665544221 12456667777
Q ss_pred cCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccc
Q 042446 338 GRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417 (445)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 417 (445)
++|......+..+.... .+++|++++|.+++..+..+..+++|+.|+|++|.++ .+|.++..+++|+.|+|++|+|+.
T Consensus 179 ~~n~~~~~~~~~~~~~~-~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~ 256 (305)
T d1xkua_ 179 DGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256 (305)
T ss_dssp TTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCcCCCCChhHhhccc-cccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence 76666655555555554 6777777777666555566666677777777777665 556666667777777777777663
Q ss_pred ccccc------ccCCCCCCeEEccCCcce
Q 042446 418 KIPST------LGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 418 ~~~~~------l~~l~~L~~l~l~~n~~~ 440 (445)
..... ....++|+.|++++|++.
T Consensus 257 i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cChhhccCcchhcccCCCCEEECCCCcCc
Confidence 32222 234566777777777664
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2e-22 Score=180.25 Aligned_cols=222 Identities=20% Similarity=0.199 Sum_probs=109.1
Q ss_pred EECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc-ccc
Q 042446 88 INLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLH-KNN 166 (445)
Q Consensus 88 L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~-~~~ 166 (445)
+++++..++ .+|..+. +.+++|++++|.+++..+..|.++++|++|+++++.+....+..+..+..++.+... .+.
T Consensus 16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 344444444 3443322 345566666666554444455555566666666555554444444555555555433 223
Q ss_pred CCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcc
Q 042446 167 LTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSC 246 (445)
Q Consensus 167 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 246 (445)
+....+..+.++++|++|++++|.+....+..+....+|+.+++++|.+++..+..+..
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~--------------------- 151 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--------------------- 151 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------
T ss_pred cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc---------------------
Confidence 33333344444444444444444443333333344444444444444444222233333
Q ss_pred cccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccc
Q 042446 247 LGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326 (445)
Q Consensus 247 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 326 (445)
.++|++|++++|.+.+..+..+..+++|+++++++|.+.+..+..|..+++|++|++++|.+... .+..+
T Consensus 152 ----~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~------~~~~~ 221 (284)
T d1ozna_ 152 ----LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL------PTEAL 221 (284)
T ss_dssp ----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC------CHHHH
T ss_pred ----ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccc------ccccc
Confidence 44455555555555444444555555555555555555555555555555555555555555442 22344
Q ss_pred cCCCCCcEEEccCCcce
Q 042446 327 ANCSKLRVLSFGRNQFR 343 (445)
Q Consensus 327 ~~~~~L~~L~l~~~~~~ 343 (445)
..+++|++|++++|.+.
T Consensus 222 ~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 222 APLRALQYLRLNDNPWV 238 (284)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred ccccccCEEEecCCCCC
Confidence 55555666666665554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2e-22 Score=180.23 Aligned_cols=222 Identities=19% Similarity=0.247 Sum_probs=105.7
Q ss_pred EEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEcc-CCC
Q 042446 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIG-VNN 214 (445)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~n~ 214 (445)
++.+++.++ .+|..+. +++++|++++|.++...+..+.++++|++|++++|.+....+..+.....++.+... .+.
T Consensus 16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 344444444 3443332 345555555555554333445555555555555555554444444444555554443 233
Q ss_pred CcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcc
Q 042446 215 LSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSV 294 (445)
Q Consensus 215 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (445)
+....+..+..+++|+.|+++.|.+ ....+..+...++|+.+++++|.++...+.
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~~-------------------------~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~ 147 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCGL-------------------------QELGPGLFRGLAALQYLYLQDNALQALPDD 147 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCC-------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccccchhhcccccCCEEecCCccc-------------------------ccccccccchhcccchhhhccccccccChh
Confidence 3323334444444455555444444 333333344444444555554444444444
Q ss_pred cccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCcc
Q 042446 295 NFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSG 374 (445)
Q Consensus 295 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 374 (445)
.|..+++|+.|++++|++..... ..+.++++|+.+++++|++++..|..+..++ +|++|++++|.+.+..+..
T Consensus 148 ~f~~~~~L~~L~l~~N~l~~l~~------~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~-~L~~L~l~~N~i~~~~~~~ 220 (284)
T d1ozna_ 148 TFRDLGNLTHLFLHGNRISSVPE------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEA 220 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHH
T ss_pred HhccccchhhcccccCcccccch------hhhccccccchhhhhhccccccChhHhhhhh-hcccccccccccccccccc
Confidence 44444455555555544433211 2344455555555555555544444444444 5555555555555444445
Q ss_pred ccCccCCCeeeCccCcce
Q 042446 375 IGNLVNLYLLAMEQNQFI 392 (445)
Q Consensus 375 ~~~~~~L~~L~l~~n~~~ 392 (445)
+..+++|+.|++++|++.
T Consensus 221 ~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 221 LAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp HTTCTTCCEEECCSSCEE
T ss_pred cccccccCEEEecCCCCC
Confidence 555555555555555544
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.8e-21 Score=169.93 Aligned_cols=201 Identities=18% Similarity=0.194 Sum_probs=117.6
Q ss_pred CCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCE
Q 042446 201 QLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEV 280 (445)
Q Consensus 201 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (445)
+...+.+++.+++.++ .+|..+. +++++|++++|.+. .++......+++|++|++++|.++. ++ .+..+++|++
T Consensus 8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~ 81 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGT 81 (266)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCE
T ss_pred ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccc-cc-cccccccccc
Confidence 3445566677777766 4565443 45677777777665 3443333346667777777776653 22 2355666777
Q ss_pred EECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEE
Q 042446 281 IQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL 360 (445)
Q Consensus 281 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 360 (445)
|++++|++... +..+..+++|+.|+++++.+..... ..+..++++++|++++|.++...+..+..+. +++++
T Consensus 82 L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~-~l~~l 153 (266)
T d1p9ag_ 82 LDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPL------GALRGLGELQELYLKGNELKTLPPGLLTPTP-KLEKL 153 (266)
T ss_dssp EECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCS------STTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEE
T ss_pred ccccccccccc-ccccccccccccccccccccceeec------cccccccccccccccccccceeccccccccc-cchhc
Confidence 77776666532 3455666666666666666554322 2344556666666666666533333333333 66666
Q ss_pred EcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 361 FLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 361 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
++++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+..
T Consensus 154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 66666666544455566666666666666665 56655556666666666666543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.3e-20 Score=166.42 Aligned_cols=195 Identities=22% Similarity=0.173 Sum_probs=121.4
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEcc
Q 042446 60 RVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLG 139 (445)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~ 139 (445)
....++.++++++ .+|+.+. +++++|+|++|.+++..+.+|.++++|++|++++|.++ .+| .++.+++|++|+++
T Consensus 11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls 85 (266)
T d1p9ag_ 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLS 85 (266)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECC
T ss_pred CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccc
Confidence 3445677777776 4565553 56788888888887555567788888888888888777 333 24667788888888
Q ss_pred CCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccC
Q 042446 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKI 219 (445)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 219 (445)
+|++. ..+..+..+++|+.|+++++.+....+..+..+.++++|++.+|.+....+..+..++.++.+++++|++++..
T Consensus 86 ~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~ 164 (266)
T d1p9ag_ 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (266)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred ccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence 87776 44556667777777777777666555555566666666666666665444445555566666666666665444
Q ss_pred CccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCC
Q 042446 220 PPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQN 262 (445)
Q Consensus 220 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (445)
+..+..+++|++|++++|.+. .+|..+.. +++|+.|++++|
T Consensus 165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~-~~~L~~L~L~~N 205 (266)
T d1p9ag_ 165 AGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLHGN 205 (266)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTT-TCCCSEEECCSC
T ss_pred ccccccccccceeecccCCCc-ccChhHCC-CCCCCEEEecCC
Confidence 444555555555555555554 44443332 333444444433
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.84 E-value=7.6e-18 Score=154.99 Aligned_cols=314 Identities=22% Similarity=0.257 Sum_probs=196.7
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEcc
Q 042446 60 RVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLG 139 (445)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~ 139 (445)
++++++++++.++ .+|.. .++|++|++++|.++ .+|+. ..+|+.|++.+|.++ .++.. .+.|++|+++
T Consensus 39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence 5678899999887 46642 467899999999888 66754 457889999998887 34421 2468999999
Q ss_pred CCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccC
Q 042446 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKI 219 (445)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 219 (445)
+|.+. .+|. ++.+++|++++++++.+... +. ....+..+.+..+... ....+..++.++.+++.++... ..
T Consensus 107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~-~~ 177 (353)
T d1jl5a_ 107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KL 177 (353)
T ss_dssp SSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS-SC
T ss_pred ccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccccccc-cc
Confidence 99887 5553 57788999999988877632 22 2345666666555443 2345667788888888887765 22
Q ss_pred CccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCC
Q 042446 220 PPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGM 299 (445)
Q Consensus 220 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 299 (445)
+.. ....+.+....+.+. .++.. . .++.++.++++++.... .+ ....++..+.+.++.+.... ...
T Consensus 178 ~~~---~~~~~~l~~~~~~~~-~~~~~-~-~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~~----~~~ 243 (353)
T d1jl5a_ 178 PDL---PLSLESIVAGNNILE-ELPEL-Q-NLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDLP----ELP 243 (353)
T ss_dssp CCC---CTTCCEEECCSSCCS-SCCCC-T-TCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCCC----CCC
T ss_pred ccc---ccccccccccccccc-ccccc-c-ccccccccccccccccc-cc---cccccccccccccccccccc----ccc
Confidence 222 223345555544433 33332 2 36778888887776552 22 23456777777777654221 223
Q ss_pred CCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCcc
Q 042446 300 KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLV 379 (445)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 379 (445)
+.+....+..+.+.... .-.......++..+.+.+. + ..+++|++|++++|+++ .+|.. ++
T Consensus 244 ~~l~~~~~~~~~~~~l~----------~l~~~~~~~~~~~~~~~~~-~----~~~~~L~~L~Ls~N~l~-~lp~~---~~ 304 (353)
T d1jl5a_ 244 QSLTFLDVSENIFSGLS----------ELPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLI-ELPAL---PP 304 (353)
T ss_dssp TTCCEEECCSSCCSEES----------CCCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCS-CCCCC---CT
T ss_pred ccccccccccccccccc----------cccchhcccccccCccccc-c----ccCCCCCEEECCCCccC-ccccc---cC
Confidence 45556665554433211 0112345556666555422 1 22347888888888887 45543 56
Q ss_pred CCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEcc
Q 042446 380 NLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLS 435 (445)
Q Consensus 380 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~ 435 (445)
+|+.|++++|+++ .+|.. +++|++|++++|+++ .+|... .+|+.|.+.
T Consensus 305 ~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~~ 352 (353)
T d1jl5a_ 305 RLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMN 352 (353)
T ss_dssp TCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEECC
T ss_pred CCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeECc
Confidence 7888888888876 56643 457888888888877 556432 356776654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=2.3e-17 Score=151.65 Aligned_cols=303 Identities=24% Similarity=0.291 Sum_probs=217.4
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSL 162 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (445)
.++++|+|+++.++ .+|+. .++|++|++++|+++ .+|..+ .+|+.|++++|.++ .++. + .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence 46899999999998 67753 578999999999999 677654 57999999999887 3332 1 146999999
Q ss_pred ccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCC
Q 042446 163 HKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGS 242 (445)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 242 (445)
++|.+. .+|. +..+++|++|++.++.+.. .+. ....+..+.+..+... ....+..++.++.+.+..+... .
T Consensus 106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~-~ 176 (353)
T d1jl5a_ 106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-K 176 (353)
T ss_dssp CSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS-S
T ss_pred cccccc-cccc-hhhhccceeeccccccccc-ccc---ccccccchhhcccccc--ccccccccccceeccccccccc-c
Confidence 999988 4454 5789999999999988763 322 3466777887765553 3455677889999999998765 3
Q ss_pred CCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcc
Q 042446 243 LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGF 322 (445)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 322 (445)
.+.. ....+.+...++.+. .. .....++.|+.+++++|..... .....++..+.+..+.+...
T Consensus 177 ~~~~----~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~~~----~~~~~~l~~~~~~~~~~~~~------- 239 (353)
T d1jl5a_ 177 LPDL----PLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTDL------- 239 (353)
T ss_dssp CCCC----CTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSSCCSSC----CSCCTTCCEEECCSSCCSCC-------
T ss_pred cccc----ccccccccccccccc-cc-cccccccccccccccccccccc----cccccccccccccccccccc-------
Confidence 3222 233456666655544 22 3467789999999999876432 23456788898888877552
Q ss_pred cccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCC
Q 042446 323 INSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKL 402 (445)
Q Consensus 323 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 402 (445)
....+.+...++..+.+.+. ...+......++..+.+.+ ....+++|++|++++|++. .+|.. +
T Consensus 240 ---~~~~~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~-~lp~~---~ 303 (353)
T d1jl5a_ 240 ---PELPQSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRS----LCDLPPSLEELNVSNNKLI-ELPAL---P 303 (353)
T ss_dssp ---CCCCTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSE----ECCCCTTCCEEECCSSCCS-CCCCC---C
T ss_pred ---cccccccccccccccccccc-----ccccchhcccccccCcccc----ccccCCCCCEEECCCCccC-ccccc---c
Confidence 22345677777776655421 2222256667777777653 2234689999999999988 67743 5
Q ss_pred CCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 403 LNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 403 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
++|+.|++++|+++ .+|+. +++|++|++++|+++. +|
T Consensus 304 ~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~-lp 340 (353)
T d1jl5a_ 304 PRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FP 340 (353)
T ss_dssp TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC
T ss_pred CCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCC-CC
Confidence 78999999999998 66653 4689999999999875 55
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=7.4e-22 Score=188.96 Aligned_cols=380 Identities=18% Similarity=0.169 Sum_probs=238.1
Q ss_pred cEEEEEcCCCCCccc-ccccccCCCCCCEEECCCCccccc----CCccccCCCCCCEEECCCCcCCCC----CCccCc-C
Q 042446 60 RVIALDLMSKALSGS-LSPHIGNLSFLREINLMDNTIQGE----IPPEFGRLFRLEALFLANNSLVGK----IPANLS-Y 129 (445)
Q Consensus 60 ~v~~l~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~----~p~~l~-~ 129 (445)
+++++|++++.+++. +...+..++++++|+|++|.++.. +...+..+++|++|++++|.++.. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 688999999999864 344566789999999999998743 445678899999999999988621 222232 2
Q ss_pred CCCCCEEEccCCcCccc----CCccccCCCCCCEEecccccCCCCCC----ccC-CCCCCcceEeeccccccc----ccC
Q 042446 130 CSRLTVLSLGQNKLVGS----IPFEFVFLYKLKGLSLHKNNLTGGIS----PFL-GNLTFLELVSLSYNSFEG----NIP 196 (445)
Q Consensus 130 l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l-~~~~~L~~L~l~~~~~~~----~~~ 196 (445)
..+|++|++++|.++.. ++..+..+++|++|++++|.++.... ..+ .................. ...
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 35899999999998743 34567789999999999998763211 111 111122233333322221 111
Q ss_pred cccCCCCCCCEEEccCCCCcccCC----ccC-cCCCCCcEEEccCCcCCCCCCc---ccccCCCCccEEEccCCcCccc-
Q 042446 197 DSLGQLKELKSLAIGVNNLSGKIP----PSI-CNLSFLVNFSVSQNQIHGSLPS---CLGLNFPNLKFFQIDQNFFTGS- 267 (445)
Q Consensus 197 ~~l~~l~~L~~L~l~~n~~~~~~~----~~l-~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~- 267 (445)
..+.....++.++++++....... ..+ ........+.+..+.+...... ......+.++.+.+.++.+...
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 223445677888887766542111 111 1223456677776654321111 1111267788888888876431
Q ss_pred ----CcccCcCCCCCCEEECccCcCccc----CcccccCCCCCCEEEccCCcCCCCCCCCCcccccc-cCCCCCcEEEcc
Q 042446 268 ----IPVSLSNASKLEVIQIANNSFSGK----FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL-ANCSKLRVLSFG 338 (445)
Q Consensus 268 ----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~ 338 (445)
..........++.+++++|.+... ....+...+.++.+++++|.+...... .+...+ .....|+.++++
T Consensus 243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~--~l~~~l~~~~~~L~~l~l~ 320 (460)
T d1z7xw1 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--LLCETLLEPGCQLESLWVK 320 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH--HHHHHHTSTTCCCCEEECT
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc--hhhcccccccccccccccc
Confidence 223445567888999988877533 223345678888888888877542111 111111 234678899998
Q ss_pred CCcceecCChhhhhc---cccCcEEEcccCccccc----CCcccc-CccCCCeeeCccCcceec----CChhhhCCCCCC
Q 042446 339 RNQFRGVLPHSITNL---SSQLQVLFLGFNQLYGS----IPSGIG-NLVNLYLLAMEQNQFIGT----IPQEMGKLLNLQ 406 (445)
Q Consensus 339 ~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~ 406 (445)
++.+.......+... .++|++|++++|++++. ++..+. ..+.|+.|++++|.++.. ++..+..+++|+
T Consensus 321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 400 (460)
T d1z7xw1 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400 (460)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC
Confidence 888765443333321 23799999999888643 223332 356799999999988632 445667788999
Q ss_pred eEEccCCccccccccc----cc-CCCCCCeEEccCCccee
Q 042446 407 GLDFGGNHFSGKIPST----LG-NLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 407 ~L~l~~n~i~~~~~~~----l~-~l~~L~~l~l~~n~~~~ 441 (445)
+|+|++|++++..... +. +..+|+.|++++|.+..
T Consensus 401 ~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence 9999999887654333 33 33478999999888764
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=5.2e-21 Score=182.98 Aligned_cols=356 Identities=19% Similarity=0.156 Sum_probs=239.8
Q ss_pred CCCEEECCCCccccc-CCccccCCCCCCEEECCCCcCCC----CCCccCcCCCCCCEEEccCCcCcccC----Ccccc-C
Q 042446 84 FLREINLMDNTIQGE-IPPEFGRLFRLEALFLANNSLVG----KIPANLSYCSRLTVLSLGQNKLVGSI----PFEFV-F 153 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~----~~p~~l~~l~~L~~L~l~~~~~~~~~----~~~~~-~ 153 (445)
+|++|+++++.+++. +.+.+..++++++|++++|.++. .++..+..+++|++|++++|.++... ...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 578999999999754 23446678999999999998873 34456678899999999999886322 22222 2
Q ss_pred CCCCCEEecccccCCCC----CCccCCCCCCcceEeecccccccccCcc----cC-CCCCCCEEEccCCCCccc----CC
Q 042446 154 LYKLKGLSLHKNNLTGG----ISPFLGNLTFLELVSLSYNSFEGNIPDS----LG-QLKELKSLAIGVNNLSGK----IP 220 (445)
Q Consensus 154 l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~----l~-~l~~L~~L~l~~n~~~~~----~~ 220 (445)
..+|++|++++|.++.. ++..+..+++|++|++++|.+....... +. .................. ..
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 35799999999988743 3456778899999999999876432221 11 223334444443333211 11
Q ss_pred ccCcCCCCCcEEEccCCcCCCC----CCcccccCCCCccEEEccCCcCccc----CcccCcCCCCCCEEECccCcCccc-
Q 042446 221 PSICNLSFLVNFSVSQNQIHGS----LPSCLGLNFPNLKFFQIDQNFFTGS----IPVSLSNASKLEVIQIANNSFSGK- 291 (445)
Q Consensus 221 ~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~- 291 (445)
..+.....++.+.++.+..... ....+.........+.+.++.+... ....+...+.++.+.+.+|.+...
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 2233457788888887754321 1111222244677888888765532 122345678899999999976432
Q ss_pred ----CcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhh----hccccCcEEEcc
Q 042446 292 ----FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSIT----NLSSQLQVLFLG 363 (445)
Q Consensus 292 ----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~ 363 (445)
..........++.+++++|.+...... .....+...+.++.+++++|.+.+.....+. .....|+.++++
T Consensus 243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~--~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~ 320 (460)
T d1z7xw1 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCG--DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 320 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred cchhhcccccccccccccccccccccccccc--cccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence 233345678999999999987653211 2334456788999999999988654333322 222379999999
Q ss_pred cCcccccCCc----cccCccCCCeeeCccCcceec----CChhhh-CCCCCCeEEccCCccccc----ccccccCCCCCC
Q 042446 364 FNQLYGSIPS----GIGNLVNLYLLAMEQNQFIGT----IPQEMG-KLLNLQGLDFGGNHFSGK----IPSTLGNLSSLS 430 (445)
Q Consensus 364 ~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~----~~~~~~-~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~ 430 (445)
+|.++..... .+..+++|++|+|++|++... ++..+. ..+.|+.|+|++|++++. ++..+..+++|+
T Consensus 321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 400 (460)
T d1z7xw1 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400 (460)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC
Confidence 9998754333 334567899999999998643 334443 467899999999999854 445677789999
Q ss_pred eEEccCCccee
Q 042446 431 EIVLSNNNLSG 441 (445)
Q Consensus 431 ~l~l~~n~~~~ 441 (445)
+|++++|+++.
T Consensus 401 ~L~Ls~N~i~~ 411 (460)
T d1z7xw1 401 ELDLSNNCLGD 411 (460)
T ss_dssp EEECCSSSCCH
T ss_pred EEECCCCcCCH
Confidence 99999999863
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=4.9e-17 Score=139.67 Aligned_cols=187 Identities=24% Similarity=0.341 Sum_probs=116.6
Q ss_pred CCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEE
Q 042446 226 LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHL 305 (445)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 305 (445)
+.+|+.|++.+|.+. .+. .+.. +++|++|++++|.+++.. .+..+++++++++++|.+++. ..+..+++|+.+
T Consensus 40 l~~L~~L~l~~~~i~-~l~-~l~~-l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l 112 (227)
T d1h6ua2 40 LDGITTLSAFGTGVT-TIE-GVQY-LNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (227)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEECCCCCCC-cch-hHhc-CCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccccc
Confidence 344444444444443 222 2222 555555555555554322 255566666666666665432 245666777777
Q ss_pred EccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeee
Q 042446 306 ILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLA 385 (445)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 385 (445)
.++++..... ..+...+.++.+.++++.+... ..+.... +|++|++++|.+++. ..+.++++|+.|+
T Consensus 113 ~l~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~-~L~~L~l~~n~~~~~--~~l~~l~~L~~L~ 179 (227)
T d1h6ua2 113 DLTSTQITDV--------TPLAGLSNLQVLYLDLNQITNI--SPLAGLT-NLQYLSIGNAQVSDL--TPLANLSKLTTLK 179 (227)
T ss_dssp ECTTSCCCCC--------GGGTTCTTCCEEECCSSCCCCC--GGGGGCT-TCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred cccccccccc--------chhccccchhhhhchhhhhchh--hhhcccc-ccccccccccccccc--hhhcccccceecc
Confidence 7766655432 1345566777777777766532 2234444 788888888887632 3367788899999
Q ss_pred CccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccC
Q 042446 386 MEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSN 436 (445)
Q Consensus 386 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~ 436 (445)
+++|++. .++ .+..+++|++|+|++|++++. + .+.++++|+.|++++
T Consensus 180 Ls~n~l~-~l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 180 ADDNKIS-DIS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp CCSSCCC-CCG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred cCCCccC-CCh-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence 9988876 343 377889999999999988843 3 377889999998864
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.8e-17 Score=141.97 Aligned_cols=203 Identities=18% Similarity=0.121 Sum_probs=110.5
Q ss_pred CCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccC-cccCcCCCCCCEEECcc-CcCcccCcccccCCCCCCEE
Q 042446 228 FLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSI-PVSLSNASKLEVIQIAN-NSFSGKFSVNFGGMKNLSHL 305 (445)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L 305 (445)
++++|++++|.+. .++...+.++++|++|++++|.+...+ +..+..++.++++.+.. +.+....+..|..+++|+.+
T Consensus 30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l 108 (242)
T d1xwdc1 30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 108 (242)
T ss_dssp CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence 3444444444443 333322222444444444444443222 22344555555555443 34444445555666666666
Q ss_pred EccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCee-
Q 042446 306 ILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLL- 384 (445)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L- 384 (445)
+++++.+..... ...+...+.++.+...++.+....+..+...+..++.|++++|+++. ++......+++..+
T Consensus 109 ~l~~~~l~~~~~-----~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~ 182 (242)
T d1xwdc1 109 LISNTGIKHLPD-----VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELN 182 (242)
T ss_dssp EEESCCCCSCCC-----CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEE
T ss_pred ccchhhhccccc-----ccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhccc
Confidence 666665543221 11233344455555555555543344444444478888888888874 34444444555555
Q ss_pred eCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCC
Q 042446 385 AMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437 (445)
Q Consensus 385 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n 437 (445)
.+.+|.++...+..|.++++|+.|+|++|+++...+..|.++++|+.+++.+.
T Consensus 183 ~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l 235 (242)
T d1xwdc1 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235 (242)
T ss_dssp CTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred cccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence 45666676333456788899999999999988444556777777776665543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=1.9e-16 Score=135.92 Aligned_cols=188 Identities=22% Similarity=0.304 Sum_probs=94.0
Q ss_pred cCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 042446 80 GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKG 159 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (445)
+.+.+|+.|++.++.++ .+ ..+..+++|++|++++|.+.+.. .+.++++|+++++++|.++ .++ .+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~ 111 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKT 111 (227)
T ss_dssp HHHHTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCE
T ss_pred HHcCCcCEEECCCCCCC-cc-hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-cccccccccc
Confidence 44555666666666655 33 23556666666666666655322 2555566666666655554 222 3445555555
Q ss_pred EecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcC
Q 042446 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQI 239 (445)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 239 (445)
+.++++...+. ..+...+.++.+. ++++.+.. ...+..+++|+.|++++|.+
T Consensus 112 l~l~~~~~~~~--~~~~~~~~~~~l~------------------------~~~~~~~~--~~~~~~~~~L~~L~l~~n~~ 163 (227)
T d1h6ua2 112 LDLTSTQITDV--TPLAGLSNLQVLY------------------------LDLNQITN--ISPLAGLTNLQYLSIGNAQV 163 (227)
T ss_dssp EECTTSCCCCC--GGGTTCTTCCEEE------------------------CCSSCCCC--CGGGGGCTTCCEEECCSSCC
T ss_pred ccccccccccc--chhccccchhhhh------------------------chhhhhch--hhhhcccccccccccccccc
Confidence 55555543321 1133344444444 44443321 11233444455555555544
Q ss_pred CCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEcc
Q 042446 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQ 308 (445)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 308 (445)
.+ .+. +. .+++|++|++++|.+++ ++ .+.++++|++|++++|++++.. .+..+++|+.|+++
T Consensus 164 ~~-~~~-l~-~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 164 SD-LTP-LA-NLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225 (227)
T ss_dssp CC-CGG-GT-TCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred cc-chh-hc-ccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence 31 111 22 25556666666655553 22 2555666666666666665432 25566666666664
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.6e-18 Score=151.85 Aligned_cols=209 Identities=14% Similarity=0.085 Sum_probs=114.9
Q ss_pred CCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccC-cCcccCccc-ccCCCCCC
Q 042446 226 LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN-SFSGKFSVN-FGGMKNLS 303 (445)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~-l~~~~~L~ 303 (445)
...|++|+++++.+.......+...+++|++|++++|.+++..+..+.++++|++|++++| .+++..... ...+++|+
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~ 124 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence 3456666666665553333333444677777777777666555566666777777777775 344332222 34567777
Q ss_pred EEEccCCcCCCCCCCCCcccccc-cCCCCCcEEEccCCc--ceecCChhhhhccccCcEEEcccCc-ccccCCccccCcc
Q 042446 304 HLILQSSNLGSGESDEMGFINSL-ANCSKLRVLSFGRNQ--FRGVLPHSITNLSSQLQVLFLGFNQ-LYGSIPSGIGNLV 379 (445)
Q Consensus 304 ~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~ 379 (445)
+|+++++...... .+...+ ..+++|+.|+++++. +++.....+....++|++|++++|. +++.....+..++
T Consensus 125 ~L~ls~c~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~ 200 (284)
T d2astb2 125 ELNLSWCFDFTEK----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200 (284)
T ss_dssp EEECCCCTTCCHH----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred ccccccccccccc----cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence 7777765321110 111122 234667777777642 3322222232222377777777653 5655556666777
Q ss_pred CCCeeeCccC-cceecCChhhhCCCCCCeEEccCCcccccccc-cccCCCCCCeEEccCCcceec
Q 042446 380 NLYLLAMEQN-QFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPS-TLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 380 ~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~l~l~~n~~~~~ 442 (445)
+|++|++++| .+++.....++.+++|+.|++++| +.+.... ....+|+|+ +..++++..
T Consensus 201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~ 261 (284)
T d2astb2 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTI 261 (284)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCT
T ss_pred cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCC
Confidence 7777777775 344444455667777777777776 3322222 223344443 455555554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.1e-16 Score=137.15 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=118.1
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCC-CccCcCCCCCCEEEccC-C
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI-PANLSYCSRLTVLSLGQ-N 141 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-p~~l~~l~~L~~L~l~~-~ 141 (445)
++.++.+++ .+|+.+. +++++|++++|.++...+.+|.++++|++|++++|.+...+ +..+.+++.++++.+.. +
T Consensus 13 i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n 89 (242)
T d1xwdc1 13 FLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89 (242)
T ss_dssp EEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred EEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence 444455665 5665543 57899999999998555667889999999999999887543 45678889999998764 5
Q ss_pred cCcccCCccccCCCCCCEEecccccCCCCCC-ccCCCCCCcceEeecccccccccCcccCCCC-CCCEEEccCCCCcccC
Q 042446 142 KLVGSIPFEFVFLYKLKGLSLHKNNLTGGIS-PFLGNLTFLELVSLSYNSFEGNIPDSLGQLK-ELKSLAIGVNNLSGKI 219 (445)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~ 219 (445)
.+....+..|.++++|++++++++.+....+ ..+..+..+..+...++.+....+..+..++ .++.+++++|.++ .+
T Consensus 90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i 168 (242)
T d1xwdc1 90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI 168 (242)
T ss_dssp TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EE
T ss_pred cccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-cc
Confidence 6665667778888999999998887763322 1222334444444455555543344444442 5666666666665 33
Q ss_pred CccCcCCCCCcEEE-ccCCcCCCCCCcccccCCCCccEEEccCCcCc
Q 042446 220 PPSICNLSFLVNFS-VSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFT 265 (445)
Q Consensus 220 ~~~l~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (445)
+.......++..+. +.+|.+. .++...+.++++|++|++++|+++
T Consensus 169 ~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~ 214 (242)
T d1xwdc1 169 HNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 214 (242)
T ss_dssp CTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC
T ss_pred ccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC
Confidence 33333334433332 3333343 333333333444444444444444
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=3.6e-16 Score=132.19 Aligned_cols=165 Identities=23% Similarity=0.332 Sum_probs=107.9
Q ss_pred CCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCC
Q 042446 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCS 330 (445)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 330 (445)
+.+|++|++++|.+++. ..+..+++|++|++++|.+++.. .++.+++|++|++++|++... ..+..++
T Consensus 45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--------~~l~~l~ 112 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--------SSLKDLK 112 (210)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--------GGGTTCT
T ss_pred hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--------ccccccc
Confidence 34555566666555532 13555666677777666665432 345666777777777666442 1356667
Q ss_pred CCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEc
Q 042446 331 KLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDF 410 (445)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 410 (445)
+|+.|++++|.+. . ...+..++ +++++++++|.+++ +..+..+++|+.+++++|++.+ ++ .+.++++|+.|++
T Consensus 113 ~L~~L~l~~~~~~-~-~~~l~~l~-~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~L 185 (210)
T d1h6ta2 113 KLKSLSLEHNGIS-D-INGLVHLP-QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYL 185 (210)
T ss_dssp TCCEEECTTSCCC-C-CGGGGGCT-TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEEC
T ss_pred ccccccccccccc-c-cccccccc-cccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEEC
Confidence 7777777777664 2 22445554 77888888887763 3345667888888888888763 33 3778888888888
Q ss_pred cCCcccccccccccCCCCCCeEEccC
Q 042446 411 GGNHFSGKIPSTLGNLSSLSEIVLSN 436 (445)
Q Consensus 411 ~~n~i~~~~~~~l~~l~~L~~l~l~~ 436 (445)
++|+++ .++ .+.++++|++|+|++
T Consensus 186 s~N~i~-~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 186 SKNHIS-DLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred CCCCCC-CCh-hhcCCCCCCEEEccC
Confidence 888887 344 578888888888864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=8.7e-16 Score=128.68 Aligned_cols=161 Identities=23% Similarity=0.346 Sum_probs=110.9
Q ss_pred CCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCC
Q 042446 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCS 330 (445)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 330 (445)
++++++|+++++.+++. ..+..+++|++|++++|.+++.. .+.++++|++|++++|.+...+ .+..++
T Consensus 39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~--------~l~~l~ 106 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--------PLANLT 106 (199)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--------GGTTCT
T ss_pred hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccccc--------cccccc
Confidence 45666666666666532 24566777777777777776543 2677777778877777664422 356777
Q ss_pred CCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEc
Q 042446 331 KLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDF 410 (445)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 410 (445)
+|+.|+++++..... ..+..++ +|++|++++|++.. + ..+..+++|+.|++.+|++.+ ++ .+.++++|+.|++
T Consensus 107 ~L~~L~l~~~~~~~~--~~~~~l~-~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~l 179 (199)
T d2omxa2 107 NLTGLTLFNNQITDI--DPLKNLT-NLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDI 179 (199)
T ss_dssp TCSEEECCSSCCCCC--GGGTTCT-TCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEEC
T ss_pred ccccccccccccccc--cccchhh-hhHHhhhhhhhhcc-c-ccccccccccccccccccccC-Cc-cccCCCCCCEEEC
Confidence 888888887766532 2344454 78888888888762 3 356778888888888888763 33 4778888899999
Q ss_pred cCCcccccccccccCCCCCCeE
Q 042446 411 GGNHFSGKIPSTLGNLSSLSEI 432 (445)
Q Consensus 411 ~~n~i~~~~~~~l~~l~~L~~l 432 (445)
++|++++ ++ .+.++++|++|
T Consensus 180 s~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 180 SSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp CSSCCCC-CG-GGGGCTTCSEE
T ss_pred CCCCCCC-Cc-cccCCCCCCcC
Confidence 8888874 33 46778888775
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=7.9e-16 Score=130.08 Aligned_cols=164 Identities=26% Similarity=0.356 Sum_probs=72.9
Q ss_pred CCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 042446 82 LSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLS 161 (445)
Q Consensus 82 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (445)
+..|++|+++++.++. ++ .+..+++|++|++++|.+++ ++ .++.+++|++|++++|+++ .++ .+..+++|+.++
T Consensus 45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEE
T ss_pred hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-cccccccccccc
Confidence 3445555555555542 22 24445555555555555542 22 2344555555555555544 222 244445555555
Q ss_pred cccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCC
Q 042446 162 LHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG 241 (445)
Q Consensus 162 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 241 (445)
+++|.+.. ...+..+++++.+ ++++|.+.+ +..+..+++|+.+++++|.+.
T Consensus 119 l~~~~~~~--~~~l~~l~~l~~l------------------------~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~- 169 (210)
T d1h6ta2 119 LEHNGISD--INGLVHLPQLESL------------------------YLGNNKITD--ITVLSRLTKLDTLSLEDNQIS- 169 (210)
T ss_dssp CTTSCCCC--CGGGGGCTTCCEE------------------------ECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-
T ss_pred cccccccc--ccccccccccccc------------------------ccccccccc--ccccccccccccccccccccc-
Confidence 54444331 1123334444444 444444331 122333444444444444443
Q ss_pred CCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECc
Q 042446 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIA 284 (445)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 284 (445)
.++. +. .+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus 170 ~i~~-l~-~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 170 DIVP-LA-GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp CCGG-GT-TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred cccc-cc-CCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 2221 21 24555555555555542 22 35555566666554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=4e-17 Score=144.94 Aligned_cols=182 Identities=19% Similarity=0.199 Sum_probs=141.2
Q ss_pred CCCccEEEccCCcCccc-CcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCc-CCCCCCCCCcccccccC
Q 042446 251 FPNLKFFQIDQNFFTGS-IPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSN-LGSGESDEMGFINSLAN 328 (445)
Q Consensus 251 ~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~ 328 (445)
..+|++|+++++.++.. +...+.++++|++|+++++.+++.....++.+++|++|+++++. +++. ++......
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~-----~l~~l~~~ 119 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----ALQTLLSS 119 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----HHHHHHHH
T ss_pred CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc-----ccchhhHH
Confidence 67899999999987643 34456889999999999999988778889999999999999964 4321 23334567
Q ss_pred CCCCcEEEccCCc-ceec-CChhhhhccccCcEEEcccCc--cccc-CCccccCccCCCeeeCccCc-ceecCChhhhCC
Q 042446 329 CSKLRVLSFGRNQ-FRGV-LPHSITNLSSQLQVLFLGFNQ--LYGS-IPSGIGNLVNLYLLAMEQNQ-FIGTIPQEMGKL 402 (445)
Q Consensus 329 ~~~L~~L~l~~~~-~~~~-~~~~~~~~~~~L~~L~l~~~~--~~~~-~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~ 402 (445)
+++|++|++++|. +++. +...+....++|+.|+++++. +++. +......+++|++|++++|. +++.....+..+
T Consensus 120 ~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~ 199 (284)
T d2astb2 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 199 (284)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred HHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhccc
Confidence 9999999999974 4432 223344445589999999863 4432 23334678999999999975 555667788899
Q ss_pred CCCCeEEccCC-cccccccccccCCCCCCeEEccCC
Q 042446 403 LNLQGLDFGGN-HFSGKIPSTLGNLSSLSEIVLSNN 437 (445)
Q Consensus 403 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~l~l~~n 437 (445)
++|++|++++| .+++.....+.++++|+.|++++|
T Consensus 200 ~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 99999999997 477777777889999999999998
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=2.5e-15 Score=125.78 Aligned_cols=125 Identities=26% Similarity=0.333 Sum_probs=55.4
Q ss_pred CCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 042446 82 LSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLS 161 (445)
Q Consensus 82 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (445)
+.++++|+++++.++ .+ +.+..+++|++|++++|.+++. + .+.++++|++|++++|.+. .++ .+..+++|+.++
T Consensus 39 l~~l~~L~l~~~~i~-~l-~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~ 112 (199)
T d2omxa2 39 LDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLT 112 (199)
T ss_dssp HTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEE
T ss_pred hcCCCEEECCCCCCC-Cc-cccccCCCcCcCccccccccCc-c-cccCCcccccccccccccc-ccc-cccccccccccc
Confidence 445555555555554 22 1244455555555555555422 1 1445555555555555443 222 244445555555
Q ss_pred cccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCc
Q 042446 162 LHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216 (445)
Q Consensus 162 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 216 (445)
++++..... ..+..+++|+.|++++|.+.. + ..+..+++|++|++.+|.++
T Consensus 113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~ 163 (199)
T d2omxa2 113 LFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVT 163 (199)
T ss_dssp CCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC
T ss_pred ccccccccc--cccchhhhhHHhhhhhhhhcc-c-cccccccccccccccccccc
Confidence 544443321 123344444444444444331 1 22334444444444444443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.62 E-value=1.1e-15 Score=127.20 Aligned_cols=127 Identities=24% Similarity=0.237 Sum_probs=74.7
Q ss_pred EEECCCCcCCCCCCccCcCCCCCCEEEccCCcCccc-CCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccc
Q 042446 111 ALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGS-IPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYN 189 (445)
Q Consensus 111 ~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 189 (445)
+++.++++++ .+|..+. +++++|++++|+++.. .+..|.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 4555555555 4444432 4556666666665432 2334555666666666666666555555666666666666666
Q ss_pred ccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC
Q 042446 190 SFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 190 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
.+....+.+|.++++|++|++++|.++...+..|..+++|+++++++|.+.
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 666555555666666666666666666555555666666666666666554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.60 E-value=4.2e-15 Score=123.69 Aligned_cols=128 Identities=20% Similarity=0.283 Sum_probs=62.7
Q ss_pred EEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccC
Q 042446 207 SLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN 286 (445)
Q Consensus 207 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (445)
+++.++++++ .+|..+. +++++|++++|.+.+.++...+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 3444444444 3343331 344555555555543333333233555555555555555444455555555555555555
Q ss_pred cCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcce
Q 042446 287 SFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR 343 (445)
Q Consensus 287 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 343 (445)
++....+..|.++++|++|++++|++..+... .+..+++|++|++++|.+.
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~------~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPG------SFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTT------SSTTCTTCCEEECTTCCBC
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHH------HhcCCcccccccccccccc
Confidence 55555555555555555555555555443221 3444555555555555543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.58 E-value=1.9e-16 Score=144.95 Aligned_cols=244 Identities=16% Similarity=0.148 Sum_probs=108.0
Q ss_pred ccCCCCCCcceEeecccccccc----cCcccCCCCCCCEEEccCCCCccc----------CCccCcCCCCCcEEEccCCc
Q 042446 173 PFLGNLTFLELVSLSYNSFEGN----IPDSLGQLKELKSLAIGVNNLSGK----------IPPSICNLSFLVNFSVSQNQ 238 (445)
Q Consensus 173 ~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----------~~~~l~~l~~L~~L~l~~~~ 238 (445)
..+.....|++|++++|.+... +...+...++|+.++++++..... +...+..+++|++|++++|.
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~ 104 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence 3345566677777777765432 223455566777777665543210 11223344555555555555
Q ss_pred CCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCccc-------------ccCCCCCCEE
Q 042446 239 IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVN-------------FGGMKNLSHL 305 (445)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L 305 (445)
+.......+ ...+..+++|++|++++|.+....... ....+.|+.+
T Consensus 105 i~~~~~~~l---------------------~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l 163 (344)
T d2ca6a1 105 FGPTAQEPL---------------------IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 163 (344)
T ss_dssp CCTTTHHHH---------------------HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred cccccccch---------------------hhhhcccccchheecccccccccccccccccccccccccccccCccccee
Confidence 443211111 112223344444444444432110000 1233445555
Q ss_pred EccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC-----ChhhhhccccCcEEEcccCccccc----CCcccc
Q 042446 306 ILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL-----PHSITNLSSQLQVLFLGFNQLYGS----IPSGIG 376 (445)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~ 376 (445)
.++++.+...... .+...+..++.|+.|++++|.+.... ...+...+ +|++|++++|.++.. +...+.
T Consensus 164 ~l~~n~i~~~~~~--~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~-~L~~L~Ls~N~i~~~g~~~L~~~l~ 240 (344)
T d2ca6a1 164 ICGRNRLENGSMK--EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALK 240 (344)
T ss_dssp ECCSSCCTGGGHH--HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred ecccccccccccc--cccchhhhhhhhcccccccccccccccccchhhhhcchh-hhccccccccccccccccccccccc
Confidence 5555544332111 12223344555555555555543211 11112222 555555555555421 223344
Q ss_pred CccCCCeeeCccCcceecCC----hhhh--CCCCCCeEEccCCcccccc----ccccc-CCCCCCeEEccCCcce
Q 042446 377 NLVNLYLLAMEQNQFIGTIP----QEMG--KLLNLQGLDFGGNHFSGKI----PSTLG-NLSSLSEIVLSNNNLS 440 (445)
Q Consensus 377 ~~~~L~~L~l~~n~~~~~~~----~~~~--~~~~L~~L~l~~n~i~~~~----~~~l~-~l~~L~~l~l~~n~~~ 440 (445)
.+++|++|++++|.+.+... ..+. ..++|+.|++++|.|+... ...+. ++++|+.|++++|++.
T Consensus 241 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 55556666666665543211 2222 2345666666666654321 22222 3456666666666653
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.51 E-value=3.9e-15 Score=136.10 Aligned_cols=256 Identities=16% Similarity=0.165 Sum_probs=141.6
Q ss_pred CCccccCCCCCCEEecccccCCC----CCCccCCCCCCcceEeeccccccc----------ccCcccCCCCCCCEEEccC
Q 042446 147 IPFEFVFLYKLKGLSLHKNNLTG----GISPFLGNLTFLELVSLSYNSFEG----------NIPDSLGQLKELKSLAIGV 212 (445)
Q Consensus 147 ~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~----------~~~~~l~~l~~L~~L~l~~ 212 (445)
+...+.....|+.|++++|.++. .+...+...++|+.++++++.... .+...+...++|++|++++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 44567778999999999998764 234457788999999998765431 1234456789999999999
Q ss_pred CCCccc----CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcC
Q 042446 213 NNLSGK----IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288 (445)
Q Consensus 213 n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (445)
|.+... +...+...++|++|++++|.+.......+... +..+. ........+.|+.+.+++|.+
T Consensus 103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~---l~~~~---------~~~~~~~~~~L~~l~l~~n~i 170 (344)
T d2ca6a1 103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA---LQELA---------VNKKAKNAPPLRSIICGRNRL 170 (344)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH---HHHHH---------HHHHHHTCCCCCEEECCSSCC
T ss_pred cccccccccchhhhhcccccchheeccccccccccccccccc---ccccc---------cccccccCcccceeecccccc
Confidence 988743 22334456788888888876542111111000 00000 000112234455555555554
Q ss_pred cccCc----ccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC----ChhhhhccccCcEE
Q 042446 289 SGKFS----VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL----PHSITNLSSQLQVL 360 (445)
Q Consensus 289 ~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L 360 (445)
.+... ..+..++.|++|++++|.+...... ..+...+..+++|+.|++++|.+.... ...+...+ +|++|
T Consensus 171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~-~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~-~L~~L 248 (344)
T d2ca6a1 171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE-HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLREL 248 (344)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHH-HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEE
T ss_pred cccccccccchhhhhhhhcccccccccccccccc-cchhhhhcchhhhcccccccccccccccccccccccccc-cchhh
Confidence 32211 2233455566666665554331100 002233455666666666666654321 22223333 66677
Q ss_pred EcccCcccccCCc----ccc--CccCCCeeeCccCcceec----CChhhh-CCCCCCeEEccCCccc
Q 042446 361 FLGFNQLYGSIPS----GIG--NLVNLYLLAMEQNQFIGT----IPQEMG-KLLNLQGLDFGGNHFS 416 (445)
Q Consensus 361 ~l~~~~~~~~~~~----~~~--~~~~L~~L~l~~n~~~~~----~~~~~~-~~~~L~~L~l~~n~i~ 416 (445)
++++|.+++.... .+. ..+.|+.|++++|++... +...+. ++++|+.|+|++|++.
T Consensus 249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 7777766543222 222 235677777777776532 233342 4677888888888775
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.4e-14 Score=113.40 Aligned_cols=111 Identities=21% Similarity=0.124 Sum_probs=65.3
Q ss_pred ccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 042446 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLK 158 (445)
Q Consensus 79 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (445)
+....+++.|+|++|.++ .++..+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+....+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence 344556677777777766 445555566677777777776663 32 356667777777777766644343445566666
Q ss_pred EEecccccCCCCC-CccCCCCCCcceEeecccccc
Q 042446 159 GLSLHKNNLTGGI-SPFLGNLTFLELVSLSYNSFE 192 (445)
Q Consensus 159 ~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 192 (445)
+|++++|.+.... ...+..+++|++|++++|.+.
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred cceeccccccccccccccccccccchhhcCCCccc
Confidence 6666666665321 123445555555555555554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=2.1e-13 Score=103.94 Aligned_cols=100 Identities=25% Similarity=0.271 Sum_probs=41.4
Q ss_pred EEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccccc
Q 042446 87 EINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNN 166 (445)
Q Consensus 87 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (445)
+|++++|.++ .++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+| .+..+++|+++++++|.
T Consensus 2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence 4444444443 222 2344444444444444444 33334444444444444444443 222 24444444444444444
Q ss_pred CCCCC-CccCCCCCCcceEeeccccc
Q 042446 167 LTGGI-SPFLGNLTFLELVSLSYNSF 191 (445)
Q Consensus 167 ~~~~~-~~~l~~~~~L~~L~l~~~~~ 191 (445)
+.... ...+..+++|++|++++|.+
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i 102 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSL 102 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcC
Confidence 43211 12233444444444444443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.3e-13 Score=108.19 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=52.8
Q ss_pred CCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhc
Q 042446 274 NASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL 353 (445)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 353 (445)
++.++++|++++|+++.. +..+..+++|+.|++++|.+... ..+..+++|++|++++|+++...+..+..+
T Consensus 16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--------~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l 86 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--------DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 86 (162)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--------CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--------CCcccCcchhhhhcccccccCCCccccccc
Confidence 444555566666655433 23334455555555555555432 124455556666666665553222222233
Q ss_pred cccCcEEEcccCcccccCC--ccccCccCCCeeeCccCcce
Q 042446 354 SSQLQVLFLGFNQLYGSIP--SGIGNLVNLYLLAMEQNQFI 392 (445)
Q Consensus 354 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~ 392 (445)
+ +|++|++++|+++. ++ ..+..+++|+.|++++|++.
T Consensus 87 ~-~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 87 P-DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp T-TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred c-ccccceeccccccc-cccccccccccccchhhcCCCccc
Confidence 3 55555555555542 11 23444555555555555544
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=4.2e-13 Score=102.26 Aligned_cols=118 Identities=25% Similarity=0.258 Sum_probs=89.5
Q ss_pred CEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCC
Q 042446 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLY 382 (445)
Q Consensus 303 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 382 (445)
+.|++++|+++..+ .+..+++|++|++++|+++ .+|..+..++ +|++|++++|.+++ ++ .+..+++|+
T Consensus 1 R~L~Ls~n~l~~l~--------~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~-~L~~L~l~~N~i~~-l~-~~~~l~~L~ 68 (124)
T d1dcea3 1 RVLHLAHKDLTVLC--------HLEQLLLVTHLDLSHNRLR-ALPPALAALR-CLEVLQASDNALEN-VD-GVANLPRLQ 68 (124)
T ss_dssp SEEECTTSCCSSCC--------CGGGGTTCCEEECCSSCCC-CCCGGGGGCT-TCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred CEEEcCCCCCCCCc--------ccccCCCCCEEECCCCccC-cchhhhhhhh-cccccccccccccc-cC-ccccccccC
Confidence 57889999886532 4678888999999999987 6777777766 89999999999874 44 578889999
Q ss_pred eeeCccCcceecC-ChhhhCCCCCCeEEccCCcccccc---cccccCCCCCCeE
Q 042446 383 LLAMEQNQFIGTI-PQEMGKLLNLQGLDFGGNHFSGKI---PSTLGNLSSLSEI 432 (445)
Q Consensus 383 ~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~---~~~l~~l~~L~~l 432 (445)
.|++++|++.+.. ...+..+++|+.|++++|++++.. ......+|+|+.+
T Consensus 69 ~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred eEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 9999999887332 256788899999999999887431 2233456787765
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.28 E-value=2.2e-13 Score=113.20 Aligned_cols=133 Identities=26% Similarity=0.400 Sum_probs=89.2
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCc
Q 042446 294 VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPS 373 (445)
Q Consensus 294 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 373 (445)
..+..+++|++|++++|.+...+ .+..+++|++|++++|.++ .++......+ +|++|++++|.++. + .
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~i~--------~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~-~L~~L~l~~N~i~~-l-~ 109 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEKIS--------SLSGMENLRILSLGRNLIK-KIENLDAVAD-TLEELWISYNQIAS-L-S 109 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESCCC--------CHHHHTTCCEEECCEEEEC-SCSSHHHHHH-HCCEEECSEEECCC-H-H
T ss_pred hHHhcccccceeECcccCCCCcc--------cccCCccccChhhcccccc-cccccccccc-cccccccccccccc-c-c
Confidence 44666777777777777775531 3667778888888888776 4443333333 78888888888773 2 3
Q ss_pred cccCccCCCeeeCccCcceecCC-hhhhCCCCCCeEEccCCcccccccc----------cccCCCCCCeEEccCCcce
Q 042446 374 GIGNLVNLYLLAMEQNQFIGTIP-QEMGKLLNLQGLDFGGNHFSGKIPS----------TLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 374 ~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~----------~l~~l~~L~~l~l~~n~~~ 440 (445)
.+..+++|+.|++++|.+..... ..+..+++|+.|++++|++....+. .+..+|+|+.|| +.+++
T Consensus 110 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~ 185 (198)
T d1m9la_ 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence 46677888888888888763221 4577888888888888887643332 155678888864 55543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=7e-11 Score=93.65 Aligned_cols=110 Identities=18% Similarity=0.131 Sum_probs=68.5
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCc-ceecCChhhhhccccCcEEEcccCcccccCCcccc
Q 042446 298 GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQ-FRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIG 376 (445)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 376 (445)
.+...+.++.+++.+.. .+..+..+++|++|+++++. ++...+..+..++ +|++|++++|+++...+..+.
T Consensus 6 ~c~~~~~l~c~~~~~~~-------~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f~ 77 (156)
T d2ifga3 6 CPHGSSGLRCTRDGALD-------SLHHLPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFH 77 (156)
T ss_dssp CCSSSSCEECCSSCCCT-------TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGG
T ss_pred CcCCCCeEEecCCCCcc-------CcccccCccccCeeecCCCccccccCchhhcccc-ccCcceeeccccCCccccccc
Confidence 34445566666665544 23345566777777776553 5533344455555 777777777777755566677
Q ss_pred CccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 377 NLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 377 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
.+++|+.|+|++|++. .++.......+|+.|+|++|++.
T Consensus 78 ~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 78 FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp SCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence 7777777777777776 44433334446777777777663
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.13 E-value=1.4e-12 Score=108.29 Aligned_cols=115 Identities=23% Similarity=0.279 Sum_probs=94.9
Q ss_pred ccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhC
Q 042446 322 FINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGK 401 (445)
Q Consensus 322 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 401 (445)
+...+..+++|++|++++|+++ .++ .+..+. +|++|++++|.++ .++.....+++|+.|++++|.+.. + ..+..
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~-~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~ 113 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK 113 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHT-TCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred hhhHHhcccccceeECcccCCC-Ccc-cccCCc-cccChhhcccccc-cccccccccccccccccccccccc-c-ccccc
Confidence 4456888999999999999997 444 466666 9999999999998 556555667789999999999873 3 45778
Q ss_pred CCCCCeEEccCCccccccc-ccccCCCCCCeEEccCCcceec
Q 042446 402 LLNLQGLDFGGNHFSGKIP-STLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 402 ~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
+++|+.|++++|++++... ..+..+++|+.|++++|++...
T Consensus 114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred cccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence 9999999999999984422 5688999999999999998754
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=3.2e-10 Score=89.77 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=59.6
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCC-cccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDN-TIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK 142 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~ 142 (445)
++.+++.+. ..|..+..+++|++|++.++ .++...+.+|.++++|+.|++++|.+....+.+|..+++|++|++++|+
T Consensus 13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~ 91 (156)
T d2ifga3 13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (156)
T ss_dssp EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence 334444443 34555666666777777544 3554445556666677777777666665555666666666666666666
Q ss_pred CcccCCccccCCCCCCEEecccccCC
Q 042446 143 LVGSIPFEFVFLYKLKGLSLHKNNLT 168 (445)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (445)
++ .+|........|+.|++++|.+.
T Consensus 92 l~-~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 92 LE-SLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp CS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred Cc-ccChhhhccccccccccCCCccc
Confidence 66 33333222335666666666553
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=3.8e-08 Score=78.05 Aligned_cols=87 Identities=24% Similarity=0.286 Sum_probs=60.1
Q ss_pred hccccCcEEEcccCccccc--CCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccccc-------cc
Q 042446 352 NLSSQLQVLFLGFNQLYGS--IPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP-------ST 422 (445)
Q Consensus 352 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-------~~ 422 (445)
.++ .|++|++++|.++.. ++..+..+++|+.|++++|.+.....-......+|+.+++++|++..... ..
T Consensus 63 ~~~-~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 63 NIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HCT-TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred hCC-CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 344 788888888888742 23445678899999999998884333233455678999999999875433 23
Q ss_pred ccCCCCCCeEEccCCccee
Q 042446 423 LGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 423 l~~l~~L~~l~l~~n~~~~ 441 (445)
+..+|+|+.| +|.++..
T Consensus 142 ~~~~P~L~~L--Dg~~v~p 158 (162)
T d1koha1 142 RERFPKLLRL--DGHELPP 158 (162)
T ss_dssp HTTSTTCCEE--TTEECCC
T ss_pred HHHCCCCCEE--CcCCCcC
Confidence 5678999985 4666543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.10 E-value=5.4e-07 Score=71.61 Aligned_cols=89 Identities=9% Similarity=0.037 Sum_probs=41.2
Q ss_pred cccCCCCCcEEEccCCcceecCChhh----hhccccCcEEEcccCccccc----CCccccCccCCCeeeCccCccee---
Q 042446 325 SLANCSKLRVLSFGRNQFRGVLPHSI----TNLSSQLQVLFLGFNQLYGS----IPSGIGNLVNLYLLAMEQNQFIG--- 393 (445)
Q Consensus 325 ~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~--- 393 (445)
.+...+.|++|++++|.+.+.....+ ... +.|++|++++|.+++. +..++...++|++|++++|....
T Consensus 39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n-~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~ 117 (167)
T d1pgva_ 39 AACNSKHIEKFSLANTAISDSEARGLIELIETS-PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 117 (167)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC-SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHhhCCccceeeccccccchhHHHHHhhhhhhc-ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccH
Confidence 34444555555555554442221111 112 2455555555555432 12233445556666666553321
Q ss_pred ----cCChhhhCCCCCCeEEccCCc
Q 042446 394 ----TIPQEMGKLLNLQGLDFGGNH 414 (445)
Q Consensus 394 ----~~~~~~~~~~~L~~L~l~~n~ 414 (445)
.+...+...++|+.|+++.+.
T Consensus 118 ~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 118 QVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhCCCccEeeCcCCC
Confidence 133444455666666665554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.08 E-value=1.1e-06 Score=69.64 Aligned_cols=112 Identities=12% Similarity=0.050 Sum_probs=80.0
Q ss_pred cCCCCCcEEEccCC-cceecCC----hhhhhccccCcEEEcccCcccccC----CccccCccCCCeeeCccCcceec---
Q 042446 327 ANCSKLRVLSFGRN-QFRGVLP----HSITNLSSQLQVLFLGFNQLYGSI----PSGIGNLVNLYLLAMEQNQFIGT--- 394 (445)
Q Consensus 327 ~~~~~L~~L~l~~~-~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~--- 394 (445)
...++|++|+|+++ .+..... ..+... +.|++|++++|.++... ...+...++|++|++++|.+...
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n-~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~ 90 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 90 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhC-CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence 45688889999874 3543322 223333 37999999999987432 23455678999999999988743
Q ss_pred -CChhhhCCCCCCeEEccCCccccc-------ccccccCCCCCCeEEccCCcc
Q 042446 395 -IPQEMGKLLNLQGLDFGGNHFSGK-------IPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 395 -~~~~~~~~~~L~~L~l~~n~i~~~-------~~~~l~~l~~L~~l~l~~n~~ 439 (445)
+..++...++|++|++++|.+... +...+...++|+.|+++.+..
T Consensus 91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence 345677889999999999865421 456667789999999987653
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=3e-07 Score=72.68 Aligned_cols=70 Identities=23% Similarity=0.215 Sum_probs=55.5
Q ss_pred ccccCccCCCeeeCccCcceec--CChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceec
Q 042446 373 SGIGNLVNLYLLAMEQNQFIGT--IPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 373 ~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
.....++.|+.|++++|+++.. ++..+..+++|+.|++++|.|++..+-......+|+++++++|+++..
T Consensus 59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~ 130 (162)
T d1koha1 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT 130 (162)
T ss_dssp HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence 3445789999999999999843 345677899999999999999954443444556899999999999764
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.76 E-value=4.2e-06 Score=66.27 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=46.1
Q ss_pred ccccCCCCCcEEEccCCcceecCChhh----hhccccCcEEEcccCccccc----CCccccCccCCCeeeCc--cCccee
Q 042446 324 NSLANCSKLRVLSFGRNQFRGVLPHSI----TNLSSQLQVLFLGFNQLYGS----IPSGIGNLVNLYLLAME--QNQFIG 393 (445)
Q Consensus 324 ~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~--~n~~~~ 393 (445)
.++..+++|++|++++|.+.......+ ... ++++++++++|.++.. +...+...++|+.++|+ +|.+..
T Consensus 40 ~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~-~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~ 118 (166)
T d1io0a_ 40 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 118 (166)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhc-ccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcH
Confidence 344455666666666665543322222 222 3566666666665432 22344555666654443 344432
Q ss_pred ----cCChhhhCCCCCCeEEccCCcc
Q 042446 394 ----TIPQEMGKLLNLQGLDFGGNHF 415 (445)
Q Consensus 394 ----~~~~~~~~~~~L~~L~l~~n~i 415 (445)
.+...+..+++|+.|+++.+..
T Consensus 119 ~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 119 NVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 2334455566667776666543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.65 E-value=1e-05 Score=63.93 Aligned_cols=113 Identities=11% Similarity=0.054 Sum_probs=80.2
Q ss_pred ccCCCCCcEEEccCC-cceecCChhh----hhccccCcEEEcccCccccc----CCccccCccCCCeeeCccCcceec--
Q 042446 326 LANCSKLRVLSFGRN-QFRGVLPHSI----TNLSSQLQVLFLGFNQLYGS----IPSGIGNLVNLYLLAMEQNQFIGT-- 394 (445)
Q Consensus 326 l~~~~~L~~L~l~~~-~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~-- 394 (445)
....++|++|+++++ .++......+ ...+ .|++|++++|.++.. +...+...++++.+++++|.+...
T Consensus 13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~-~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~ 91 (166)
T d1io0a_ 13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 91 (166)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCC-ccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence 345688888888873 4543332223 3344 899999999998753 233456678999999999988633
Q ss_pred --CChhhhCCCCCCeEEcc--CCccccc----ccccccCCCCCCeEEccCCcc
Q 042446 395 --IPQEMGKLLNLQGLDFG--GNHFSGK----IPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 395 --~~~~~~~~~~L~~L~l~--~n~i~~~----~~~~l~~l~~L~~l~l~~n~~ 439 (445)
+...+...++|+.++|+ +|.+.+. +...+...++|+.|+++.+..
T Consensus 92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 34567788999987665 5667643 455667889999999988764
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