Citrus Sinensis ID: 042447

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MVHDNIALLGELENLNVEEENEVELFEEPSWTSERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTVETYCNSAQGIGYGIVHPSADCLTSNDKDAKLAEPTRNEIVHTEL
cccccHHHccccccccccccccEEEEEcccccccccccEEEEEEccccccccccccHHHHHHHHHHHHcccccEEEEccccEEEEEEEEEEccccccEEEEEEEEEEcccccccccccccccEEEEEccccEEEEEcEEEEccccEEEEccccccccccEEEEEEEEEcccccccccEEEccccccEEEEEcEEEccccEEEEccccccEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEEEEEEEEEEEEEcccccEEEEccccccEEcEEEEEEEEEEccccEEEEEEEEEEEEEEEEccccccccccccccccccccccccccccc
cccccHHHHHHHHccccccccccEEccccccccccccccEEEEHHcccccccccccHHHHHHHHHHHHcccccEEEEccccEEEEEEEEEEccccccEEEEEEEEEEccccHHHcccccccEEEEEEEEcEEEEEEcEEEcccccHHHcccccccccccEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEEccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEEcccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEccccccccHHHccccccccccccccHHccccccHHHcccccccccccccc
MVHDNIALLgelenlnveeenevelfeepswtserggkvlvnvdsfgaagdgvsdDTQAFLNAWNtacstpksvflvpagrhylvsatrfkgpcadklviqidgtivapaepdnwdpkLARIWLDFSklngvlfqgsgvidgsgskwwassckknkseSVRVYQVLVsapedspntdgihitestnvvlqdckigtgddcisivngssaikmkrifcgpghgisigslgkdnsmgIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRnisgttksskamkfacsdtvpcsdivlsnvnlekkdgtvetycnsaqgigygivhpsadcltsndkdaklaeptrneivhtel
mvhdniallgelenlnveeENEVELfeepswtserggKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTivapaepdnwDPKLARIWLDFSKLNGVLFQGsgvidgsgsKWWASSCKKNKSESVRVYQVLVSapedspntdgiHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGIsigslgkdnsMGIVTKVVLDTAYLREtanglriktwqtsavkiSQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTVETYCNSAQGIGYGIVHPSADCLTSNdkdaklaeptrneivhtel
MVHDNIAllgelenlnveeenevelfeePSWTSERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTVETYCNSAQGIGYGIVHPSADCLTSNDKDAKLAEPTRNEIVHTEL
*******LL*********************WT**RGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVS********DGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTVETYCNSAQGIGYGIVHPSADCL**********************
***DN*ALLGELENLNVEEENEVELFEEP*****RGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTVETYCNSAQGIGYGIVHPSAD************************
MVHDNIALLGELENLNVEEENEVELFEEPSWTSERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTVETYCNSAQGIGYGIVHPSADCLTSNDKDAKLAEPTRNEIVHTEL
MVHDNIALLGELENLNVEEENEVELFEEPSWTSE*GGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTVETYCNSAQGIGYGIVHPSADCLTS********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVHDNIALLGELENLNVEEENEVELFEEPSWTSERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTVETYCNSAQGIGYGIVHPSADCLTSNDKDAKLAEPTRNEIVHTEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
Q94AJ5444 Probable polygalacturonas no no 0.884 0.707 0.362 6e-63
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.774 0.535 0.378 1e-62
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.825 0.577 0.364 1e-61
P43212514 Polygalacturonase OS=Cryp N/A no 0.836 0.577 0.360 2e-61
P35336467 Polygalacturonase OS=Acti N/A no 0.805 0.612 0.382 8e-60
Q8RY29433 Polygalacturonase ADPG2 O no no 0.802 0.658 0.378 6e-57
O23147431 Polygalacturonase ADPG1 O no no 0.794 0.654 0.370 2e-56
P48978460 Polygalacturonase OS=Malu N/A no 0.873 0.673 0.358 3e-56
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.732 0.592 0.368 8e-56
Q02096462 Polygalacturonase OS=Pers N/A no 0.785 0.603 0.366 2e-55
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function desciption
 Score =  241 bits (615), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 143/395 (36%), Positives = 203/395 (51%), Gaps = 81/395 (20%)

Query: 20  ENEVELFEEPSWTSERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTP-KSVFLVP 78
           E+ ++L    S ++    + L++V +FGA G+GV+DDT+AF +AW TACS+  K+  LVP
Sbjct: 32  ESLLQLPRRQSRSTRPRSERLLHVGNFGAKGNGVTDDTKAFADAWKTACSSKVKTRILVP 91

Query: 79  AGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSG 138
                L+      GPC  +L +QI GTI+AP +PD W+    R WL F  L+ +  +G G
Sbjct: 92  ENYTCLLRPIDLSGPCKARLTLQISGTIIAPNDPDVWEGLNRRKWLYFHGLSRLTVEGGG 151

Query: 139 VIDGSGSKWWASSCKKNKSESVR------------------------------------- 161
            ++G G +WW  SCK N S   R                                     
Sbjct: 152 TVNGMGQEWWERSCKHNHSNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRV 211

Query: 162 -VYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPG 220
            +  + V AP  SPNTDGIHI+ S  +V+ +  + TGDDCISIV  S+ I +  I CGPG
Sbjct: 212 TISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGPG 271

Query: 221 HGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNIS----- 275
           HGISIGSLGK  S   V  + +DTA + +TANG+RIKTWQ  +  +S+I++RNI      
Sbjct: 272 HGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNVS 331

Query: 276 ----------------------------------GTTKSSKAMKFACSDTVPCSDIVLSN 301
                                             GT+ S +A+K +CSD+ PC +I+L +
Sbjct: 332 NPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQD 391

Query: 302 VNLEKK--DGTVETYCNSAQGIGYGIVHPSADCLT 334
           ++LE    DG  E++C  A G   G V+P   CL+
Sbjct: 392 IDLEPSNGDGFTESFCWEAYGSSSGQVYPPP-CLS 425

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
224115662447 predicted protein [Populus trichocarpa] 0.980 0.778 0.637 1e-155
224056805 469 predicted protein [Populus trichocarpa] 1.0 0.756 0.633 1e-154
224130352445 predicted protein [Populus trichocarpa] 0.969 0.773 0.675 1e-153
359473233 462 PREDICTED: probable polygalacturonase At 0.997 0.766 0.628 1e-144
297739065 1125 unnamed protein product [Vitis vinifera] 0.997 0.314 0.619 1e-142
356565972 460 PREDICTED: probable polygalacturonase At 0.991 0.765 0.611 1e-140
307135968 610 polygalacturonase [Cucumis melo subsp. m 0.988 0.575 0.585 1e-135
145336060 460 polygalacturonase [Arabidopsis thaliana] 0.991 0.765 0.597 1e-135
4056431 457 Similar to gb|AJ002532 endo-polygalactur 0.991 0.770 0.6 1e-134
449434943 610 PREDICTED: probable polygalacturonase At 0.988 0.575 0.579 1e-132
>gi|224115662|ref|XP_002317091.1| predicted protein [Populus trichocarpa] gi|222860156|gb|EEE97703.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 285/447 (63%), Positives = 319/447 (71%), Gaps = 99/447 (22%)

Query: 8   LLGELENLNVEEENEVELFEEPSWTSERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTA 67
           +L ELE+  +++E++VELF+ PSWTSERGGKVLVNVDSFGA GDG+SDDTQAF+ AW TA
Sbjct: 1   MLEELESFEIDDEDDVELFDIPSWTSERGGKVLVNVDSFGAVGDGISDDTQAFVKAWGTA 60

Query: 68  CSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFS 127
           C+ PKSVFLVP+GR YLV+ATRFKGPC DKL+IQIDGTIVAP EP NWDP LAR+WLDFS
Sbjct: 61  CAIPKSVFLVPSGRRYLVNATRFKGPCEDKLIIQIDGTIVAPDEPKNWDPDLARLWLDFS 120

Query: 128 KLNGVLFQGSGVIDGSGSKWWASSCKKNKSE----------------------------- 158
           KLNGVLFQG+GVIDGSGSKWWASSCKKNKS                              
Sbjct: 121 KLNGVLFQGNGVIDGSGSKWWASSCKKNKSNPCRGAPTALTIDSSSAVKVKGLTIKNSQQ 180

Query: 159 ---------SVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSA 209
                    SVR+ +V VS+P DSPNTDGIHIT+STNVVLQDCKIGTGDDCISIVNGSSA
Sbjct: 181 MNFVISKSASVRISKVTVSSPGDSPNTDGIHITQSTNVVLQDCKIGTGDDCISIVNGSSA 240

Query: 210 IKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTW---------- 259
           IKMK I+CGPGHG+SIGSLGKDNS GIVTKVVLDTA +RET NG+RIKTW          
Sbjct: 241 IKMKGIYCGPGHGVSIGSLGKDNSTGIVTKVVLDTALIRETTNGVRIKTWQGGNGYVRGV 300

Query: 260 -----------------------------QTSAVKISQIMYRNISGTTKSSKAMKFACSD 290
                                        QTSAV+IS+IMYRNISGTTKS+KAMKF+CSD
Sbjct: 301 RFENVRMDNVDNPIIIDQFYCDSPKSCQNQTSAVRISEIMYRNISGTTKSAKAMKFSCSD 360

Query: 291 TVPCSDIVLSNVNLEKKDGTVETYCNSAQGIGYGIVHPSADCLTSNDKD----------- 339
           T PCS IVLSNVNLEK+DGTVETYCNSA+G GYGIVHPSADCLTS+DKD           
Sbjct: 361 TAPCSTIVLSNVNLEKEDGTVETYCNSAEGFGYGIVHPSADCLTSHDKDYSFFEQTEVSQ 420

Query: 340 -----------AKLAEPTRNEIVHTEL 355
                       +LA+   + IVHTEL
Sbjct: 421 DYILNDVTEEKVELADSNNDRIVHTEL 447

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056805|ref|XP_002299032.1| predicted protein [Populus trichocarpa] gi|222846290|gb|EEE83837.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224130352|ref|XP_002328587.1| predicted protein [Populus trichocarpa] gi|222838569|gb|EEE76934.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359473233|ref|XP_003631273.1| PREDICTED: probable polygalacturonase At1g80170-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739065|emb|CBI28554.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356565972|ref|XP_003551209.1| PREDICTED: probable polygalacturonase At1g80170-like [Glycine max] Back     alignment and taxonomy information
>gi|307135968|gb|ADN33827.1| polygalacturonase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|145336060|ref|NP_173760.2| polygalacturonase [Arabidopsis thaliana] gi|332192268|gb|AEE30389.1| polygalacturonase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4056431|gb|AAC98004.1| Similar to gb|AJ002532 endo-polygalacturonase from Arabidopsis thaliana and is a member of the polygalacturonase family PF|00295 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449434943|ref|XP_004135255.1| PREDICTED: probable polygalacturonase At1g80170-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TAIR|locus:2028844460 AT1G23460 [Arabidopsis thalian 0.507 0.391 0.575 1.2e-87
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.504 0.382 0.552 1.3e-82
TAIR|locus:2054396433 PGAZAT "polygalacturonase absc 0.335 0.274 0.546 1.3e-55
TAIR|locus:2066251402 AT2G26620 [Arabidopsis thalian 0.309 0.273 0.464 7.9e-55
TAIR|locus:2047218402 AT2G15460 [Arabidopsis thalian 0.309 0.273 0.464 5.4e-54
TAIR|locus:2047223404 AT2G15450 [Arabidopsis thalian 0.309 0.272 0.455 8.7e-54
TAIR|locus:2196055491 AT1G02460 [Arabidopsis thalian 0.371 0.268 0.424 2.3e-53
TAIR|locus:2047153404 AT2G15470 [Arabidopsis thalian 0.309 0.272 0.455 2.3e-53
TAIR|locus:2103478431 ADPG1 [Arabidopsis thaliana (t 0.445 0.366 0.417 1.1e-52
TAIR|locus:2119485404 AT4G13760 [Arabidopsis thalian 0.309 0.272 0.446 3.4e-52
TAIR|locus:2028844 AT1G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 550 (198.7 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
 Identities = 111/193 (57%), Positives = 133/193 (68%)

Query:    29 PSWTSERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSAT 88
             PS+TS   GK LVNVD+FGAAGDGVSDDTQAF++AW+ ACST KSVFLVP GR YLV+AT
Sbjct:    55 PSFTSRHSGKNLVNVDTFGAAGDGVSDDTQAFVSAWSKACSTSKSVFLVPEGRRYLVNAT 114

Query:    89 RFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWW 148
             +F GPC  KL+IQIDGTIVAP EP NWD K  RIWL+FSKL GV+FQG GVIDGSGSKWW
Sbjct:   115 KFNGPCEQKLIIQIDGTIVAPDEPSNWDSKFQRIWLEFSKLKGVVFQGKGVIDGSGSKWW 174

Query:   149 ASSCKKNKSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSS 208
             A+SCKKNKS   +      SAP        + I  S+ V +    I        I+  S 
Sbjct:   175 AASCKKNKSNPCK------SAPT------ALTIESSSGVKVSGLTIQNSQQMNFIIARSD 222

Query:   209 AIKMKRIFCG-PG 220
             ++++ ++    PG
Sbjct:   223 SVRVSKVMVSSPG 235
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054396 PGAZAT "polygalacturonase abscission zone A. thaliana" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066251 AT2G26620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047218 AT2G15460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047223 AT2G15450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196055 AT1G02460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047153 AT2G15470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103478 ADPG1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119485 AT4G13760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I003312
hypothetical protein (469 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 8e-98
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 2e-72
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 4e-66
PLN03010409 PLN03010, PLN03010, polygalacturonase 5e-64
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-61
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 8e-58
PLN02155394 PLN02155, PLN02155, polygalacturonase 4e-53
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 4e-09
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 8e-07
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information 
 Score =  296 bits (760), Expect = 8e-98
 Identities = 150/387 (38%), Positives = 195/387 (50%), Gaps = 81/387 (20%)

Query: 29  PSWTSERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTP-KSVFLVPAGRHYLVSA 87
            + T  R  +VL  V  FGA GDGV+DDTQAF  AW  ACS+  K+  ++PAG  +LV  
Sbjct: 42  SARTRPRSERVLH-VGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRP 100

Query: 88  TRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKW 147
               GPC  KL +QI GTI+AP +PD W     R WL F  +N +  +G G ++G G +W
Sbjct: 101 IDLGGPCKAKLTLQISGTIIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEW 160

Query: 148 WASSCKKNKSESVR--------------------------------------VYQVLVSA 169
           WA SCK N +   R                                      +  + V A
Sbjct: 161 WAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIA 220

Query: 170 PEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLG 229
           P  SPNTDGIHI+ S  VV++D  + TGDDCISIV  SS IK++ I CGPGHGISIGSLG
Sbjct: 221 PATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLG 280

Query: 230 KDNSMGIVTKVVLDTAYLRETANGLRIKTWQ----------------------------- 260
           K NS   V  + +D A+L  T NG+RIKTWQ                             
Sbjct: 281 KSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYY 340

Query: 261 ----------TSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDG- 309
                     TSAVK+  I + +I GT+ + +A+KFACSD+ PC  + L +V L    G 
Sbjct: 341 CDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD 400

Query: 310 TVETYCNSAQGIGYGIVHPSADCLTSN 336
             E++C  A G   G V+P   C + +
Sbjct: 401 FTESFCWEAYGSSSGQVYPPP-CFSDS 426

Length = 443
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
PLN02793443 Probable polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.84
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.77
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.33
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.21
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 99.16
PLN02218431 polygalacturonase ADPG 99.13
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.09
PLN02793443 Probable polygalacturonase 99.06
PLN02155394 polygalacturonase 99.05
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.04
PLN03003 456 Probable polygalacturonase At3g15720 99.03
PLN03010409 polygalacturonase 98.93
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 98.58
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.43
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.39
smart00656190 Amb_all Amb_all domain. 98.3
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 97.96
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.93
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.75
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.71
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 97.54
PLN02773317 pectinesterase 97.51
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 97.42
PLN02480343 Probable pectinesterase 97.41
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.34
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.3
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 97.2
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.16
PLN02682369 pectinesterase family protein 97.04
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 97.04
PLN02176340 putative pectinesterase 97.03
PLN02432293 putative pectinesterase 96.92
PLN02665366 pectinesterase family protein 96.9
PLN02671359 pectinesterase 96.89
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.86
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 96.82
PLN02634359 probable pectinesterase 96.82
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.8
PLN02916502 pectinesterase family protein 96.71
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 96.61
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.6
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 96.59
PLN02201520 probable pectinesterase/pectinesterase inhibitor 96.57
PLN02170529 probable pectinesterase/pectinesterase inhibitor 96.56
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.55
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.53
PLN02304379 probable pectinesterase 96.52
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.5
PLN02301548 pectinesterase/pectinesterase inhibitor 96.48
PRK10531422 acyl-CoA thioesterase; Provisional 96.44
PLN02497331 probable pectinesterase 96.35
PLN02488509 probable pectinesterase/pectinesterase inhibitor 96.34
PLN02506537 putative pectinesterase/pectinesterase inhibitor 96.29
PLN02468565 putative pectinesterase/pectinesterase inhibitor 96.24
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 96.17
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 96.12
PLN02484587 probable pectinesterase/pectinesterase inhibitor 96.07
smart00656190 Amb_all Amb_all domain. 95.89
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.86
PLN02197588 pectinesterase 95.75
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.65
PLN02314586 pectinesterase 95.6
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.45
PLN02313587 Pectinesterase/pectinesterase inhibitor 95.39
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 95.3
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 93.94
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 93.2
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 92.2
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 89.34
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 88.73
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 87.76
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-65  Score=508.23  Aligned_cols=310  Identities=46%  Similarity=0.854  Sum_probs=271.4

Q ss_pred             CceEEEeeecCCCCCCCcchHHHHHHHHHHhhcC-CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceEEeecCCCCCC
Q 042447           37 GKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACST-PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNW  115 (355)
Q Consensus        37 ~~~~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~-gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~l~~~~~~~~~  115 (355)
                      .+.++||+||||+|||++|||+|||+||++||+. +|++|+||+|.+|+++++.|.+||+++++|+++|+|+++.++.+|
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w  128 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVW  128 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHc
Confidence            4579999999999999999999999999977874 678999999977999999999999999999999999999999999


Q ss_pred             CccCcceEEEEEeccCeEEecceEEECcCCccccCCCCC-------CC-------------------------------c
Q 042447          116 DPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKK-------NK-------------------------------S  157 (355)
Q Consensus       116 ~~~~~~~~i~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~-------~~-------------------------------~  157 (355)
                      +....+.|+++.+.+|++|+|.|+|||+|+.||...+..       .+                               +
T Consensus       129 ~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~  208 (443)
T PLN02793        129 KGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNC  208 (443)
T ss_pred             cCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEcc
Confidence            866667899999999999999999999999999653210       11                               1


Q ss_pred             ccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccceE
Q 042447          158 ESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIV  237 (355)
Q Consensus       158 ~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v  237 (355)
                      +||+|++++|++|...+|+||||+.+|+||+|+||+|.+|||||++|++++||+|+||+|.++|||+|||+|++.+.+.|
T Consensus       209 ~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V  288 (443)
T PLN02793        209 RRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEV  288 (443)
T ss_pred             CcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcE
Confidence            78999999999988889999999999999999999999999999999999999999999999999999999987767889


Q ss_pred             EEEEEecceecCCceeEEEEEecc---------------------------------------CCeEEeeEEEEeEEEee
Q 042447          238 TKVVLDTAYLRETANGLRIKTWQT---------------------------------------SAVKISQIMYRNISGTT  278 (355)
Q Consensus       238 ~nV~i~n~~~~~~~~gi~Ik~~~~---------------------------------------~~~~i~nItf~NI~g~~  278 (355)
                      +||+|+||++.++.+|+|||+|++                                       +.+.|+||+|+||+++.
T Consensus       289 ~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~  368 (443)
T PLN02793        289 RDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTS  368 (443)
T ss_pred             EEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEE
Confidence            999999999999999999999962                                       23567777777777776


Q ss_pred             cCcccEEEEcCCCCceeCEEEEeEEEEeCCCc-ceeeeeeeEEeeceeccCCCCccCCCCCCccccCCCccc
Q 042447          279 KSSKAMKFACSDTVPCSDIVLSNVNLEKKDGT-VETYCNSAQGIGYGIVHPSADCLTSNDKDAKLAEPTRNE  349 (355)
Q Consensus       279 ~~~~~i~i~~~~~~~~~nI~~~nV~i~~~~g~-~~~~c~n~~g~~~~~~~p~~~c~~~~~~~~~~~~~~~~~  349 (355)
                      ..+.++.|.|+++.||+||+|+||+|+...|. ..+.|+|++|...+...|+ .|++.+.  -.+.+++..+
T Consensus       369 ~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~-~C~~~~~--~~~~~~~~~~  437 (443)
T PLN02793        369 ATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPP-PCFSDST--SFIKQKVQSG  437 (443)
T ss_pred             cccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCC-ccccCCC--cccccccCCc
Confidence            55668999999999999999999999987554 5788999999999976676 5997754  3444444433

>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 5e-13
1nhc_A336 Structural Insights Into The Processivity Of Endopo 1e-11
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 5e-10
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 3e-08
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 4e-08
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 7e-08
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 7e-08
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 8e-07
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 9e-04
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure 
Iteration: 1

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 77/357 (21%)
Query: 33  SERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKG 92
           S +G     N+ S+GA  D  +D   A  +AW  AC +   V+ +P+G + L +     G
Sbjct: 13  STKGATKTCNILSYGAVADNSTDVGPAITSAW-AACKSGGLVY-IPSGNYALNTWVTLTG 70
Query: 93  PCADKLVIQIDGTIVAP--------AEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSG 144
             A    IQ+DG I           A  D  D +L      FS  +    QG G +  + 
Sbjct: 71  GSATA--IQLDGIIYRTGTASGNMIAVTDTTDFEL------FSSTSKGAVQGFGYVYHAE 122
Query: 145 SKWWASSCKKNKSESVRVYQV-LVSAPE---------------------DSPNTDGIHIT 182
             + A   +        V+ + LV AP                      +    DGI + 
Sbjct: 123 GTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNEGGLDGIDVW 182
Query: 183 ESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKD----------- 231
            S N+ + D ++   D+C+++ + ++ I ++ I+C    G ++GSLG D           
Sbjct: 183 GS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTDVTDIVYRNV 241
Query: 232 -----NSM---------GIVTKVVLDTAYLRETANGLRIKTWQTS-------AVKISQIM 270
                N M         G V+ V+L+       A  L I  + +S        V+++ I 
Sbjct: 242 YTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQLNNIT 301
Query: 271 YRNISGTTKSSKA---MKFACSDTVPCSDIVLSNVNLEKKDGTVETY-CNSAQGIGY 323
            +N  GT  +      ++  CSDT PC+D+ L ++ +  + G+ E Y C SA G GY
Sbjct: 302 VKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGY 358
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 2e-92
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 3e-74
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 9e-73
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 2e-61
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 7e-60
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 4e-59
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 6e-57
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-56
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 8e-54
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 3e-39
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-22
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 6e-22
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 1e-17
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 7e-05
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 2e-11
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 1e-09
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 1e-08
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 4e-07
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 3e-05
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 1e-05
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  282 bits (722), Expect = 2e-92
 Identities = 74/372 (19%), Positives = 131/372 (35%), Gaps = 81/372 (21%)

Query: 32  TSERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFK 91
            S +G     N+ S+GA  D  +D   A  +AW  AC +   +  +P+G + L +     
Sbjct: 12  ASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSG-GLVYIPSGNYALNTWVTLT 69

Query: 92  GPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASS 151
           G       IQ+DG I                  D +          G + G G  + A  
Sbjct: 70  GGS--ATAIQLDGIIYRTGTASGN----MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEG 123

Query: 152 CKK-----------------------------NKSESVRVYQVLVSAPEDSPNTDGIHIT 182
                                           +      VY + +    +    DGI + 
Sbjct: 124 TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDV- 181

Query: 183 ESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVL 242
             +N+ + D ++   D+C+++ + ++ I ++ I+C    G ++GSLG D     VT +V 
Sbjct: 182 WGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVY 238

Query: 243 DTAYLRETANGLRIKTW-----------------------------------QTSAVKIS 267
              Y   +     IK+                                        V+++
Sbjct: 239 RNVYTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQLN 298

Query: 268 QIMYRNISGTTKSSK---AMKFACSDTVPCSDIVLSNVNLEKKDGTVETY-CNSAQGIGY 323
            I  +N  GT  +      ++  CSDT PC+D+ L ++ +  + G+ E Y C SA G GY
Sbjct: 299 NITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGY 358

Query: 324 GIVHPSADCLTS 335
            +   S+    +
Sbjct: 359 CLKDSSSHTSYT 370
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.97
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.95
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.95
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.94
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.86
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.64
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.59
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.5
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.45
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.45
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.34
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.26
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.22
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.22
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.2
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.17
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.17
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.17
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.04
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.01
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.73
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.72
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 98.7
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.54
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.51
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.28
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.27
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.25
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.24
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.18
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.16
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.1
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.09
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.02
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.96
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.9
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.88
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.87
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.71
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.62
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.55
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 97.33
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.89
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.71
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.07
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.04
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.02
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 95.88
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.88
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.81
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.68
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.65
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.63
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 95.38
2inu_A410 Insulin fructotransferase; right-handed parallel b 95.37
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 95.21
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.06
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 94.68
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 93.31
3riq_A543 Tailspike protein; right handed beta-helix, endorh 91.16
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 89.95
2vfm_A 559 Bifunctional tail protein; P22 tailspike protein, 88.15
2v5i_A 559 Salmonella typhimurium DB7155 bacteriophage DET7 t 88.09
2xc1_A 666 Bifunctional tail protein; hydrolase, endoglycosid 84.27
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 83.3
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=9.7e-53  Score=418.41  Aligned_cols=259  Identities=27%  Similarity=0.438  Sum_probs=207.0

Q ss_pred             CceEEEeeecCCCCCCCcchHHHHHHHHHHhhcCCCcEEEEcCCeEEEEeeeeeeccccccEEEEEceEEeecCCCCCCC
Q 042447           37 GKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWD  116 (355)
Q Consensus        37 ~~~~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~l~~~~~~~~~~  116 (355)
                      ++.++||++|||+|||++|||+|||+||+++++.++++|+||+|+ |+++++.|+    ++++|+++|+|++++++.+|.
T Consensus        24 ~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~~~ggg~v~vP~G~-yl~~~l~l~----s~v~l~l~gtL~~s~d~~~y~   98 (448)
T 3jur_A           24 PDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPEGV-FLTGPIHLK----SNIELHVKGTIKFIPDPERYL   98 (448)
T ss_dssp             CSCEEEGGGGTCCCEEEEECHHHHHHHHHHHHHHTCEEEEECSSE-EEESCEECC----TTEEEEESSEEEECCCGGGGC
T ss_pred             CCcEEEEEecccCCCCCeecHHHHHHHHHhhhhcCCeEEEECCCc-EEEeeeEeC----CCcEEEEEEEEEecCCHHHhC
Confidence            346899999999999999999999999996444578999999995 999998876    688999999999999999883


Q ss_pred             ccC-----------cceEEEEEeccCeEEecceEEECcC--CccccCCCC------------------------------
Q 042447          117 PKL-----------ARIWLDFSKLNGVLFQGSGVIDGSG--SKWWASSCK------------------------------  153 (355)
Q Consensus       117 ~~~-----------~~~~i~~~~~~ni~I~G~G~IdG~G--~~~~~~~~~------------------------------  153 (355)
                      +..           ..+||++.+++||+|+|.|+|||+|  +.||...+.                              
T Consensus        99 p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~  178 (448)
T 3jur_A           99 PVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVE  178 (448)
T ss_dssp             SCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHHTCCGG
T ss_pred             cccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcccCcch
Confidence            221           1357899999999999999999999  899974220                              


Q ss_pred             --------CCCc-------------------------------ccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEE
Q 042447          154 --------KNKS-------------------------------ESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKI  194 (355)
Q Consensus       154 --------~~~~-------------------------------~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i  194 (355)
                              ..++                               +||+|++++|.++  .+|+||||+.+|+||+|+||+|
T Consensus       179 ~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~n~~i  256 (448)
T 3jur_A          179 ERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCRF  256 (448)
T ss_dssp             GCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEESCEE
T ss_pred             hhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEEeeEE
Confidence                    0111                               4566666666554  6899999999999999999999


Q ss_pred             ecCCceEEeecC-----------CccEEEEeeEE--cCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEEec
Q 042447          195 GTGDDCISIVNG-----------SSAIKMKRIFC--GPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQ  260 (355)
Q Consensus       195 ~~gDD~I~ik~g-----------~~ni~i~n~~~--~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~  260 (355)
                      .++||||++|++           ++||+|+||+|  .++| |++|||++    .+.|+||+|+||++.++.+|++||+|.
T Consensus       257 ~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~GirIKt~~  332 (448)
T 3jur_A          257 DTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERALRLKTNS  332 (448)
T ss_dssp             EESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEEEEEECCT
T ss_pred             EeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccceEEEEEEc
Confidence            999999999998           79999999999  6677 89999984    467999999999999999999999987


Q ss_pred             cCCeE-----------------------------------EeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEE
Q 042447          261 TSAVK-----------------------------------ISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLE  305 (355)
Q Consensus       261 ~~~~~-----------------------------------i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~  305 (355)
                      ..++.                                   |+||+|+||+++. ...++.|.|.++.||+||+|+||+|+
T Consensus       333 g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~~~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~~~I~~~nv~i~  411 (448)
T 3jur_A          333 RRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEGEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYVKDILISDTIIE  411 (448)
T ss_dssp             TTCSEEEEEEEESCEEEEESSEEEEEESCGGGCCCSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCEEEEEEEEEEEE
T ss_pred             CCCceEeeEEEEEEEEECCccccEEEEeeccCCCCCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCEeeEEEEEEEEE
Confidence            44444                                   4555555555544 34455666666666666666666666


Q ss_pred             eC
Q 042447          306 KK  307 (355)
Q Consensus       306 ~~  307 (355)
                      ..
T Consensus       412 ~~  413 (448)
T 3jur_A          412 GA  413 (448)
T ss_dssp             SC
T ss_pred             cc
Confidence            43
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A Back     alignment and structure
>2v5i_A Salmonella typhimurium DB7155 bacteriophage DET7 tailspike; O-antigen binding and hydrolysis, beta-helix, viral protein; 1.60A {Bacteriophage} Back     alignment and structure
>2xc1_A Bifunctional tail protein; hydrolase, endoglycosidase, salmonella phage P22; HET: PE4; 1.65A {Enterobacteria phage P22} PDB: 1lkt_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 355
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 2e-58
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-48
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-39
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 1e-36
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 3e-35
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 5e-35
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 5e-34
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 4e-27
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  192 bits (490), Expect = 2e-58
 Identities = 75/366 (20%), Positives = 129/366 (35%), Gaps = 81/366 (22%)

Query: 32  TSERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFK 91
            S +G     N+ S+GA  D  +D   A  +AW  AC +   +  +P+G + L +     
Sbjct: 12  ASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSG-GLVYIPSGNYALNTWVTLT 69

Query: 92  GPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASS 151
           G       IQ+DG I                  D +          G + G G  + A  
Sbjct: 70  GGS--ATAIQLDGIIYRTGTASGN----MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEG 123

Query: 152 CKKNK-----------------------------SESVRVYQVLVSAPEDSPNTDGIHIT 182
               +                                  VY + +    +    DGI + 
Sbjct: 124 TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVW 182

Query: 183 ESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVL 242
            S N+ + D ++   D+C+++ + ++ I ++ I+C    G ++GSLG D     VT +V 
Sbjct: 183 GS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVY 238

Query: 243 DTAYLRETANGLRIKTW-----------------------------------QTSAVKIS 267
              Y   +     IK+                                        V+++
Sbjct: 239 RNVYTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQLN 298

Query: 268 QIMYRNISGTTKSSK---AMKFACSDTVPCSDIVLSNVNLEKKDGTVETY-CNSAQGIGY 323
            I  +N  GT  +      ++  CSDT PC+D+ L ++ +  + G+ E Y C SA G GY
Sbjct: 299 NITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGY 358

Query: 324 GIVHPS 329
            +   S
Sbjct: 359 CLKDSS 364
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.42
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.41
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.2
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.14
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.13
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.1
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.03
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.02
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 98.92
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.11
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.03
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.88
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.86
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.79
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.69
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.62
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.42
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.3
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.4
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 95.66
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.37
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 94.96
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.64
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 93.84
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 93.35
d1tywa_ 554 P22 tailspike protein {Salmonella phage P22 [TaxId 92.93
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 92.58
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 91.33
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 90.49
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 82.62
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=2.6e-53  Score=418.11  Aligned_cols=285  Identities=25%  Similarity=0.472  Sum_probs=233.7

Q ss_pred             cccCCCceEEEeeecCCCCCCCcchHHHHHHHHHHhhcCCCcEEEEcCCeEEEEe-eeeeeccccccEEEEEceEEeecC
Q 042447           32 TSERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVS-ATRFKGPCADKLVIQIDGTIVAPA  110 (355)
Q Consensus        32 ~~~~~~~~~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~gg~~V~iP~G~tY~i~-~~~l~~p~~~~~~l~~~g~l~~~~  110 (355)
                      .+.++..++|||+||||+|||++|||+|||+||+ ||+. |++|+||+|+ |++. ++.|+++  ..+.|+++|+|+++.
T Consensus        12 ~~~~~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~~-gg~V~iP~Gt-y~l~~~i~l~g~--~~~~l~~~G~i~~~~   86 (422)
T d1rmga_          12 ASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKS-GGLVYIPSGN-YALNTWVTLTGG--SATAIQLDGIIYRTG   86 (422)
T ss_dssp             HHHHHHHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHTB-TCEEEECSSE-EEECSCEEEESC--EEEEEEECSEEEECC
T ss_pred             ccccCCCcEEEEecCCCCCCCCccCHHHHHHHHH-hcCC-CCEEEECCCc-EEEeCcEEEcCC--CceEEEEeEEEEecc
Confidence            3444456899999999999999999999999997 6874 7899999996 6554 5888875  578999999999876


Q ss_pred             CCCCCCccCcceEEEEEeccCeEEecceEEECcCCccccCCCCCCC-----------------------------cccEE
Q 042447          111 EPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNK-----------------------------SESVR  161 (355)
Q Consensus       111 ~~~~~~~~~~~~~i~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~~~-----------------------------~~nv~  161 (355)
                      ....|    ...+....+.+.+.+.|.|+|||+|+.||.......+                             +++++
T Consensus        87 ~~~~~----~~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~v~  162 (422)
T d1rmga_          87 TASGN----MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGE  162 (422)
T ss_dssp             CCSSE----EEEEEEEEEEEEECSSSCCEEECCTHHHHTTTCCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEEE
T ss_pred             CCccC----EEEeccCccEEEEEeecceEEecCcceecCCCCCCCcEEEEEeeeeeEEECcEecCCCceEEEEeccccEE
Confidence            54332    1234455566677788999999999999976432211                             16777


Q ss_pred             EEEEEEeCCCCCCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccceEEEEE
Q 042447          162 VYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVV  241 (355)
Q Consensus       162 i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~  241 (355)
                      |+|++|+++ ..+|+||||+.+ +||+|+||+|.++||||++|++++||+|+|++|.++||++|||+|++   ..|+||+
T Consensus       163 i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~~---~~V~nV~  237 (422)
T d1rmga_         163 VYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDVTDIV  237 (422)
T ss_dssp             EEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECTT---EEEEEEE
T ss_pred             EEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccCC---CCEEEEE
Confidence            777777765 467999999975 58999999999999999999999999999999999999999998754   4689999


Q ss_pred             EecceecCCceeEEEEEec-----------------------------------cCCeEEeeEEEEeEEEeec---Cccc
Q 042447          242 LDTAYLRETANGLRIKTWQ-----------------------------------TSAVKISQIMYRNISGTTK---SSKA  283 (355)
Q Consensus       242 i~n~~~~~~~~gi~Ik~~~-----------------------------------~~~~~i~nItf~NI~g~~~---~~~~  283 (355)
                      |+||++.++.+|++||+|.                                   .+++.|+||+|+||+|+..   .+.+
T Consensus       238 v~n~~~~~s~~g~~ik~~~g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~~~~~v~isnIt~~Ni~GT~~~~~~~~~  317 (422)
T d1rmga_         238 YRNVYTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQLNNITVKNWKGTEANGATRPP  317 (422)
T ss_dssp             EEEEEEESSSCSEEEEEBBCCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCBSSSCCEEEEEEEEEEEEEESCTTTSCS
T ss_pred             EEeEEEeCCCceEEEEEcCCCceecceEEEEEEEecccccEEEecccCCCCCCCCCCeEEEEEEEEeEEEEecCCccccc
Confidence            9999999999999998764                                   3456899999999999864   3568


Q ss_pred             EEEEcCCCCceeCEEEEeEEEEeCCCc-ceeeeeeeEEeeceeccCCCCccCCCCC
Q 042447          284 MKFACSDTVPCSDIVLSNVNLEKKDGT-VETYCNSAQGIGYGIVHPSADCLTSNDK  338 (355)
Q Consensus       284 i~i~~~~~~~~~nI~~~nV~i~~~~g~-~~~~c~n~~g~~~~~~~p~~~c~~~~~~  338 (355)
                      +.|.|++..||+||+|+||+|+.+.|. ..+.|+|++|..        .||+.++.
T Consensus       318 i~l~Cs~~~pc~ni~l~ni~l~~~~g~~~~~~C~na~G~~--------~~l~~~~~  365 (422)
T d1rmga_         318 IRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSG--------YCLKDSSS  365 (422)
T ss_dssp             EEEECBTTBCEEEEEEEEEEEEESSSSCEEEEEESEEEES--------TTCBCCSS
T ss_pred             EEEEcCCCCCCcceEEEEEEEEcCCCCCcceEEECceeeE--------EeecCCCC
Confidence            999999999999999999999998876 467899999965        26655553
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure