Citrus Sinensis ID: 042466

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKISGAL
Secondary Structure (PSIPRED)
ccccccccccccEEEcccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHccEEEEEEccccccccccHHHHHHHHHcHHccccEEEEEEccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
massyrnnkkydvfvsfrgedtrdnFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFsesypssrwCLDELVKILECKKEYAQILIpvfyrvdpsdvrnqtgsfgdsFSKLEERFKENSKKLQTWRKALKEAaslsgfpsqsiriNNKSKRILQYISNKISGAL
Flexible Loop (DISEMBL)
massyrnnkkydvfvsfrgedtrDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKeaaslsgfpsqsirinnkskrILQYISNKISGAL
Low Complexity Region (SEG)
MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKISGAL
Disordered region (IsUnstruct)
**********YDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVD***********************************************************************
Disordered Region (DISOPRED)
******NNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEER*****KKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKISGAL
Disordered Region (DISEMBL)
********KKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKISGAL
Disordered Region (DISPRO)
******NNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKISGAL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKISGAL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.792	0.123	0.542	2e-40
O82500	1095	Putative disease resistan	no	no	0.932	0.151	0.468	2e-38
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.915	0.125	0.415	1e-32
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.764	0.330	0.445	4e-27
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.825	0.415	0.392	9e-26
Q9SYC9	571	Vesicle-associated protei	no	no	0.842	0.262	0.364	1e-22
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.831	0.377	0.403	1e-22
Q9FL92	1372	Probable WRKY transcripti	no	no	0.595	0.077	0.336	5e-07
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.679	0.063	0.282	6e-07

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/142 (54%), Positives = 102/142 (71%), Gaps = 1/142 (0%)

Query: 11  YDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVI 69
           YDVF+SFRGEDTR  FTSHLY  L+ + I+TF DD+ L  G  I   L  AIE S  +++
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 70  IFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERF 129
           +FSE+Y +SRWCL+ELVKI+ECK  + Q +IP+FY VDPS VRNQ  SF  +F + E ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 130 KENSKKLQTWRKALKEAASLSG 151
           K++ + +Q WR AL EAA+L G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/173 (46%), Positives = 112/173 (64%), Gaps = 7/173 (4%)

Query: 1   MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNA 60
           MASS  N+ +YDVF SFRGED R+NF SHL      + I TF DD + R   I   L  A
Sbjct: 1   MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60

Query: 61  IEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGD 120
           I  S ISV++FSE+Y SS WCLDEL++I++CK+E    ++PVFY+VDPSD+R QTG FG 
Sbjct: 61  IRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGM 120

Query: 121 SFSKLEERFKENSKKLQTWRKALKEAASLSG-----FPSQSIRINNKSKRILQ 168
           SF  LE    +  ++   WR+AL +AA++ G     + +++ +I   SK +L+
Sbjct: 121 SF--LETCCGKTEERQHNWRRALTDAANILGDHPQNWDNEAYKITTISKDVLE 171

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 111/171 (64%), Gaps = 8/171 (4%)

Query: 3   SSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIE 62
           +S   +++YDVF SFRGED RD+F SHL   L  + I TFIDD++ R   I   L++AI+
Sbjct: 4   ASSSGSRRYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPELLSAIK 62

Query: 63  ASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSF 122
            S I+++IFS++Y SS WCL+ELV+I +C     Q++IP+F+ VD S+V+ QTG FG  F
Sbjct: 63  ESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVF 122

Query: 123 SKLEERFKENSKKLQTWRKALKEAASLSGF-----PSQSIRINNKSKRILQ 168
            +  +   E+ K  Q+W++AL   A ++G+     PS++  I   ++ +L+
Sbjct: 123 EETCKAKSEDEK--QSWKQALAAVAVMAGYDLRKWPSEAAMIEELAEDVLR 171

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  120 bits (302), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 85/137 (62%), Gaps = 1/137 (0%)

Query: 13  VFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFS 72
           VF++FRG+D R  F S L  AL ++ I  FID+Q  RG  +  SL + I  S I+++IFS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 73  ESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKEN 132
           E Y  S WC+DELVKI E   +   I+IP+FYR+D   V++ TG FGD+F  L ++++  
Sbjct: 83  EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPE 142

Query: 133 SKKLQTWRKALKEAASL 149
            KKL  W +AL     L
Sbjct: 143 PKKLHKWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  116 bits (290), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 6/153 (3%)

Query: 13  VFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFS 72
           VF++FRG+D R+ F S L  A+   NI  FID     G ++    V  I+ S ++V+IFS
Sbjct: 16  VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLFVR-IQESRVAVVIFS 74

Query: 73  ESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKEN 132
           + Y SS WCLDEL +I +C  +     IP+FY++ PS V    G FGD+F  L+E++K +
Sbjct: 75  KDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGDTFRVLKEKYKND 134

Query: 133 SKKLQTWRKALKEAASLSGFPSQSIRINNKSKR 165
            ++ Q W++AL+    L G     +R+  KS R
Sbjct: 135 PERTQKWQEALESIPKLKG-----LRLAEKSDR 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 10  KYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVI 69
           +Y VF++FRG++ R++F   L  A+  + I  F D+   RG  ++  L   IE S ++V 
Sbjct: 357 QYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-YLFRRIEESRVAVA 415

Query: 70  IFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERF 129
           IFSE Y  S WCLDELVK+ E  ++   +++PVFYR++ +  +   G+FGD+   LE  +
Sbjct: 416 IFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGAFGDNLRNLEWEY 475

Query: 130 KENSKKLQTWRKALKEAASLSGFPSQSIRIN 160
           +   +++Q W++AL    S  G  S   R N
Sbjct: 476 RSEPERIQKWKEALSSVFSNIGLTSDIRRYN 506

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 85/151 (56%), Gaps = 3/151 (1%)

Query: 13  VFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFS 72
           VF+ FRG D R +F S L  AL   NI  FID+    G E++ +L+  IE S ++++IFS
Sbjct: 17  VFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA-NLLTRIEESELALVIFS 75

Query: 73  ESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKEN 132
             +  S  CL+EL KI E K +   I+IP+FY+V PS V+   G FGD+F  LE   +  
Sbjct: 76  VDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEGKFGDNFRALERNNRHM 135

Query: 133 SKKLQTWRKALKEAASLSGFP--SQSIRINN 161
               Q W++AL+      G P   QS R +N
Sbjct: 136 LPITQKWKEALESIPGSIGMPLAEQSERTDN 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 10/116 (8%)

Query: 20  EDTRDNFTSHLYSALSRQNIQ-TFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSS 78
           E+ R +F SHL  AL R+ +   FID      D +S    + +E + +SV+I     P +
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSD----DSLSNESQSMVERARVSVMIL----PGN 65

Query: 79  RWC-LDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENS 133
           R   LD+LVK+L+C+K   Q+++PV Y V  S+    +      FS +    KE S
Sbjct: 66  RTVSLDKLVKVLDCQKNKDQVVVPVLYGVRSSETEWLSALDSKGFSSVHHSRKECS 121

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 31/152 (20%)

Query: 5   YRNNKKYDVFVSF-RGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEA 63
           + ++K YDV + + R + + ++F SHL ++L R+ I  +  ++ N         V+A+  
Sbjct: 662 FSSSKDYDVVIRYGRADISNEDFISHLRASLCRRGISVY--EKFNE--------VDALPK 711

Query: 64  SAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSD-VRNQTGSFGDSF 122
             + +I+ + +Y  S      L+ ILE +    +++ P+FYR+ P D V N         
Sbjct: 712 CRVLIIVLTSTYVPS-----NLLNILEHQHTEDRVVYPIFYRLSPYDFVCN--------- 757

Query: 123 SKLEERF--KENSKKLQTWRKALKEAASLSGF 152
           SK  ERF  ++  KK   W+ ALKE   + G+
Sbjct: 758 SKNYERFYLQDEPKK---WQAALKEITQMPGY 786

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
255555357	1094	leucine-rich repeat-containing protein,	0.938	0.152	0.607	2e-51
255564976	944	TMV resistance protein N, putative [Rici	0.910	0.171	0.618	2e-51
255561496	876	TMV resistance protein N, putative [Rici	0.983	0.199	0.585	1e-50
351722793	299	TIR-NBS-LRR type disease resistance prot	0.943	0.561	0.537	1e-50
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.842	0.133	0.62	6e-50
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.943	0.114	0.579	1e-49
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.865	0.122	0.616	3e-49
357486483	242	TMV resistance protein N [Medicago trunc	0.904	0.665	0.552	4e-49
317106744	947	JHS03A10.2 [Jatropha curcas]	0.842	0.158	0.626	5e-49
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.865	0.107	0.603	8e-49

>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 130/168 (77%), Gaps = 1/168 (0%)

Query: 9   KKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISV 68
           +KYDVF+SFRGEDTR NFTSHL++AL+ + I TFIDD L RG+EIS SL+ AIE S ISV
Sbjct: 21  EKYDVFLSFRGEDTRYNFTSHLHAALNGKKIPTFIDDDLERGNEISPSLLKAIEESKISV 80

Query: 69  IIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEER 128
           +I S+ YPSS+WCL+ELVKILEC K   Q++IPVFYRVDPS VRNQTGSF D F++ EE 
Sbjct: 81  VIISQDYPSSKWCLEELVKILECMKNRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEES 140

Query: 129 FKENSKKLQTWRKALKEAASLSGFPSQSIRINNKS-KRILQYISNKIS 175
              + +K+Q+WR ALKE A+LSG+ S S R   ++ K I++ I  K++
Sbjct: 141 LSVSKEKVQSWRAALKEVANLSGWHSTSTRPEAEAVKEIIEVIVKKLN 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/165 (61%), Positives = 125/165 (75%), Gaps = 3/165 (1%)

Query: 10  KYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVI 69
           KYDVFVSFRGEDTRDNFTSHLY+AL ++ I+ F+DD+L+RG+EIS +LV  IE S +SVI
Sbjct: 15  KYDVFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDKLSRGEEISAALVKVIEESMVSVI 74

Query: 70  IFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERF 129
           IFSE+Y  S WCLDELVKILECKK   QI++PVFY VDPSDV  Q G FG +F + E+ F
Sbjct: 75  IFSENYAFSPWCLDELVKILECKKTVGQIVLPVFYHVDPSDVAEQKGGFGAAFIEHEKCF 134

Query: 130 KENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKI 174
           KE   KLQ WR AL EAA++SG+ S  IR  +K   ++Q I+  I
Sbjct: 135 KERIDKLQKWRAALTEAANISGWSSSVIRSESK---LIQEIAEDI 176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/176 (58%), Positives = 131/176 (74%), Gaps = 1/176 (0%)

Query: 1   MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNA 60
           MA    + KKYDVF+SFRGEDTRDNFTSHLYSAL+++ I TF+D ++ RG+EIS S+  A
Sbjct: 1   MAPLATSEKKYDVFLSFRGEDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKA 60

Query: 61  IEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGD 120
           I+ S +SVIIFSE Y  S+WCLDEL KILECKK   QI+IPVFYRVDP  VRNQ GSF  
Sbjct: 61  IKGSKLSVIIFSEKYAFSKWCLDELTKILECKKMNGQIVIPVFYRVDPVHVRNQRGSFAC 120

Query: 121 SFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKS-KRILQYISNKIS 175
           +F+K EE  KE  +K+++WR AL EA S+SG+ S   R  +K  + I++ IS K++
Sbjct: 121 AFAKHEETLKERMEKVESWRSALNEAGSISGWNSLVARPESKLIEEIVKDISKKLN 176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722793|ref|NP_001237768.1| TIR-NBS-LRR type disease resistance protein [Glycine max] gi|223452578|gb|ACM89616.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/173 (53%), Positives = 131/173 (75%), Gaps = 5/173 (2%)

Query: 11  YDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVII 70
           +DVF+SFRGEDTR  FTSHLY+AL+R  ++T+ID++L RGDEIS SL+ AI+ + ++VI+
Sbjct: 19  HDVFLSFRGEDTRYTFTSHLYAALTRLQVKTYIDNELERGDEISPSLLRAIDDAKVAVIV 78

Query: 71  FSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFK 130
           FSE+Y SSRWCLDELVKI+ECK++  QI++PVFY VDP+ VR+QTGS+G +F+  E+RF 
Sbjct: 79  FSENYASSRWCLDELVKIMECKRKNGQIIVPVFYHVDPTHVRHQTGSYGHAFAMHEQRFV 138

Query: 131 ENSKKLQTWRKALKEAASLSGFPSQSIRINNK-----SKRILQYISNKISGAL 178
            N  K+QTWR  L E A++SG+   + R+ ++     +  ILQ + +  SG L
Sbjct: 139 GNMNKVQTWRLVLGEVANISGWDCLTTRVESELVEKIAMDILQKLDSITSGGL 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  202 bits (513), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 122/150 (81%)

Query: 9   KKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISV 68
           +KYDVF+SFRGEDTR  F SHLY+AL R+ I TFID +LNRG+EIS SL+ AIE S +SV
Sbjct: 13  EKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKLSV 72

Query: 69  IIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEER 128
           ++FS++Y SS+WCL+EL KILECKK   Q++IPVFYRVDPS VRNQTGSF D+F++ ++ 
Sbjct: 73  VVFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHDQL 132

Query: 129 FKENSKKLQTWRKALKEAASLSGFPSQSIR 158
            KE  +K+  WR A++EAA+LSG+ S +I+
Sbjct: 133 LKEKMEKVLNWRAAMREAANLSGWDSHNIK 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/169 (57%), Positives = 127/169 (75%), Gaps = 1/169 (0%)

Query: 10  KYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVI 69
           KYDVF+SFRG+DTRDNF SHL  AL R+ I+TFIDD+L RG+EI+ +L+  IE S ISVI
Sbjct: 12  KYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGALLRTIEESRISVI 71

Query: 70  IFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERF 129
           IFS +Y SS WC+DELVKILECKK Y QI++PVFY VDPSDV  QTGSFG++F++LE  F
Sbjct: 72  IFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQTGSFGNAFAELERNF 131

Query: 130 KENSKKLQTWRKALKEAASLSGFPSQSIRINNK-SKRILQYISNKISGA 177
           K+   K+  WR  L  AA++SG+ SQ  R  +   ++I+ +I  K++ A
Sbjct: 132 KQKMDKVPRWRADLTSAANISGWDSQVTRPESSLVEQIVHHILKKLNYA 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/154 (61%), Positives = 120/154 (77%)

Query: 2   ASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAI 61
           +SS  + +KYDVF+SFRGEDTR+NFTSHLY AL R+ I+TFIDD L RG+EI+ +L+  I
Sbjct: 4   SSSVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITPALLKKI 63

Query: 62  EASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDS 121
           E S ISV+IFS++Y SS WC+DELVKILECK+   QI++PVFY VDPSDV  QTGSFG++
Sbjct: 64  EESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPSDVDEQTGSFGNA 123

Query: 122 FSKLEERFKENSKKLQTWRKALKEAASLSGFPSQ 155
           FS+LE  FK    K+  WR  +  AAS+SG+ SQ
Sbjct: 124 FSELENIFKGKMDKVPRWRADMTYAASISGWDSQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486483|ref|XP_003613529.1| TMV resistance protein N [Medicago truncatula] gi|355514864|gb|AES96487.1| TMV resistance protein N [Medicago truncatula] gi|388497304|gb|AFK36718.1| unknown [Medicago truncatula] gi|388511843|gb|AFK43983.1| unknown [Medicago truncatula]

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 128/161 (79%)

Query: 2   ASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAI 61
            SS    +K++VF+SFRGEDTR  FTSHL++ L+R ++ T+ID  L RGDEIS +L+ AI
Sbjct: 5   TSSNTPQQKHEVFLSFRGEDTRYTFTSHLHATLTRLDVGTYIDYHLQRGDEISSALLRAI 64

Query: 62  EASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDS 121
           E +++SV++FS++Y +S+WCLDELVKILECKK   QI++P+FY ++PSDVRNQTGS+ D+
Sbjct: 65  EEASLSVVVFSKNYGNSKWCLDELVKILECKKMRGQIVLPIFYDIEPSDVRNQTGSYADA 124

Query: 122 FSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNK 162
           F K EERF  N +++Q WR+AL+EAA+LSG+   + R+ ++
Sbjct: 125 FVKHEERFHGNLERVQKWREALREAANLSGWDCSTNRMESE 165

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106744|dbj|BAJ53239.1| JHS03A10.2 [Jatropha curcas]

 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 118/150 (78%)

Query: 9   KKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISV 68
           ++YDVF+SFRGEDTRD+FTSHLY+AL  + IQTFID+ L RG EIS SL+ AIE S ISV
Sbjct: 8   ERYDVFLSFRGEDTRDSFTSHLYAALCDKKIQTFIDNNLVRGKEISSSLLKAIEESKISV 67

Query: 69  IIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEER 128
            I SE+Y SS+WCL+EL +I++C K+  QI+IPVFYR+ PSDVRNQTGSF D+F++ E+ 
Sbjct: 68  PILSENYASSKWCLEELAEIIKCMKKNGQIVIPVFYRIRPSDVRNQTGSFHDAFARYEKS 127

Query: 129 FKENSKKLQTWRKALKEAASLSGFPSQSIR 158
              N  K+Q WR ALKE A LSG+ S +IR
Sbjct: 128 LMVNKDKVQRWRAALKEVAGLSGWDSMAIR 157

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  198 bits (503), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 121/154 (78%)

Query: 2   ASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAI 61
           +S+  +  KYDVF+SFRG+DTR+NFTSHLY AL R+ I+TFIDD+L RG EI+ +L+  I
Sbjct: 4   SSAVAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEITPALLKTI 63

Query: 62  EASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDS 121
           E S ISV+IFS++Y SS WC+DELVKILECK+ Y QI++PVFY V+PSDV  QTGSFG++
Sbjct: 64  EESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPSDVDEQTGSFGNA 123

Query: 122 FSKLEERFKENSKKLQTWRKALKEAASLSGFPSQ 155
           F++LE+ FK    K+  WR  L  AAS+SG+ SQ
Sbjct: 124 FAELEKNFKGKMDKVPRWRADLTNAASISGWDSQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.977	0.152	0.480	2.2e-37
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.775	0.440	0.531	6.3e-37
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.949	0.154	0.460	3.6e-35
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.966	0.139	0.468	4.8e-33
TAIR|locus:2155189	980	AT5G49140 [Arabidopsis thalian	0.803	0.145	0.523	1.4e-32
TAIR|locus:2130319	796	RLM3 "RESISTANCE TO LEPTOSPHAE	0.955	0.213	0.451	2.9e-32
TAIR|locus:2129221	1147	RPP4 "recognition of peronospo	0.966	0.149	0.446	3.9e-32
TAIR|locus:2160472	1038	AT5G41540 [Arabidopsis thalian	0.960	0.164	0.426	5.3e-32
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.882	0.121	0.439	9.9e-32
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.966	0.144	0.412	1.1e-31

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 413 (150.4 bits), Expect = 2.2e-37, P = 2.2e-37
 Identities = 85/177 (48%), Positives = 120/177 (67%)

Query:     1 MASSYRNNK-KYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDEISESLV 58
             MASS  +++  YDVF+SFRGEDTR  FTSHLY  L+ + I+TF DD+ L  G  I   L 
Sbjct:     1 MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELC 60

Query:    59 NAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSF 118
              AIE S  ++++FSE+Y +SRWCL+ELVKI+ECK  + Q +IP+FY VDPS VRNQ  SF
Sbjct:    61 KAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESF 120

Query:   119 GDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKS-KRILQYISNKI 174
               +F + E ++K++ + +Q WR AL EAA+L G      + +    ++I+  IS+K+
Sbjct:   121 AKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNRDKTDADCIRQIVDQISSKL 177

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 76/143 (53%), Positives = 105/143 (73%)

Query:    10 KYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVI 69
             K+DVF+SFR +DTRDNF SHL   L R+ I+TF+ D+L   +   ESL  AIE S ISVI
Sbjct:     8 KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESL-KAIEVSKISVI 66

Query:    70 IFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERF 129
             +FSE++  SRWCLDE+V IL+CK+++ QI+IPV Y VDP D+ NQTGSFGD+F+K  ++ 
Sbjct:    67 VFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDK- 125

Query:   130 KENSKKLQTWRKALKEAASLSGF 152
                +++LQ W+ +  EA +L G+
Sbjct:   126 ---AEQLQEWKDSFTEAINLPGW 145

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 3.6e-35, P = 3.6e-35
 Identities = 81/176 (46%), Positives = 114/176 (64%)

Query:     1 MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNA 60
             MASS  N+ +YDVF SFRGED R+NF SHL      + I TF DD + R   I   L  A
Sbjct:     1 MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60

Query:    61 IEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGD 120
             I  S ISV++FSE+Y SS WCLDEL++I++CK+E    ++PVFY+VDPSD+R QTG FG 
Sbjct:    61 IRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGM 120

Query:   121 SFSKLEERFKENSKKLQTWRKALKEAASLSG-----FPSQSIRINNKSKRILQYIS 171
             SF  LE    +  ++   WR+AL +AA++ G     + +++ +I   SK +L+ ++
Sbjct:   121 SF--LETCCGKTEERQHNWRRALTDAANILGDHPQNWDNEAYKITTISKDVLEKLN 174

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 4.8e-33, P = 4.8e-33
 Identities = 82/175 (46%), Positives = 112/175 (64%)

Query:     1 MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNA 60
             MASS   +  YDVF SF GED R +F SHL   L R++I TFID+ + R   I+  L++A
Sbjct:     1 MASSSSRSWTYDVFPSFSGEDVRKSFLSHLLKKLHRKSINTFIDNNIERSHAIAPDLLSA 60

Query:    61 IEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGD 120
             I  S IS+++FS+ Y SS WCL+ELV+I +C KE  QI+IP+FY VDPSDVR QT  FG+
Sbjct:    61 INNSMISIVVFSKKYASSTWCLNELVEIHKCYKELTQIVIPIFYEVDPSDVRKQTREFGE 120

Query:   121 SFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRIN-NKSKRILQYISNKI 174
              F K+    K    K Q W +AL+E AS++G  S++     N  + I + + NK+
Sbjct:   121 FF-KVTCVGKTEDVK-QQWIEALEEVASIAGHDSKNWPNEANMIEHIAKDVLNKL 173

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 77/147 (52%), Positives = 97/147 (65%)

Query:    10 KYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVI 69
             KYDVF SFRGED R NF SHL      + I TF DD + R   I   L  A+  S I V+
Sbjct:    14 KYDVFPSFRGEDVRGNFLSHLMKEFESKGIVTFKDDLIERSQTIGLELKEAVRQSKIFVV 73

Query:    70 IFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERF 129
             IFS++Y SS WCLDELV+IL+CK+E  + LIP+FY+V+PSDVRNQTG FG  F +  E  
Sbjct:    74 IFSKNYASSSWCLDELVEILKCKEE--RRLIPIFYKVNPSDVRNQTGKFGRGFRETCEG- 130

Query:   130 KENSKKLQTWRKALKEAASLSGFPSQS 156
              +N +    W+ AL EAA+++G  SQS
Sbjct:   131 -KNDETQNKWKAALTEAANIAGEDSQS 156

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2130319 RLM3 "RESISTANCE TO LEPTOSPHAERIA MACULANS 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 79/175 (45%), Positives = 114/175 (65%)

Query:     1 MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNA 60
             M SS  +++ YDVF +FRGED R +  SHL   L R+ I TF D+++ R  +I+  L+ A
Sbjct:     1 MKSS--SSQSYDVFPNFRGEDVRHSLVSHLRKELDRKFINTFNDNRIERSRKITPELLLA 58

Query:    61 IEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGD 120
             IE S IS+++FS++Y SS WCLDELVKI EC ++  Q++IP+FY+VDPS VR QTG FG 
Sbjct:    59 IENSRISLVVFSKNYASSTWCLDELVKIQECYEKLDQMVIPIFYKVDPSHVRKQTGEFGM 118

Query:   121 SFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKS-KRILQYISNKI 174
              F +  +   EN K+   W +AL E A L+G   ++ R   +  + I + +SNK+
Sbjct:   119 VFGETCKGRTENEKR--KWMRALAEVAHLAGEDLRNWRSEAEMLENIAKDVSNKL 171

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:2000071 "regulation of defense response by callose deposition" evidence=IMP

GO:0015979 "photosynthesis" evidence=RCA

TAIR|locus:2129221 RPP4 "recognition of peronospora parasitica 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 3.9e-32, P = 3.9e-32
 Identities = 79/177 (44%), Positives = 114/177 (64%)

Query:     2 ASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAI 61
             +SS  ++++YDVF SF G D R  F SHL  AL R++I TF+D  + R   I+++L+ AI
Sbjct:     4 SSSSPSSRRYDVFPSFSGVDVRKTFLSHLIEALDRRSINTFMDHGIVRSCIIADALITAI 63

Query:    62 EASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDS 121
               + IS++IFSE+Y SS WCL+ELV+I +C K+  Q++IPVFY VDPS VR Q G FGD 
Sbjct:    64 REARISIVIFSENYASSTWCLNELVEIHKCYKKGEQMVIPVFYGVDPSHVRKQIGGFGDV 123

Query:   122 FSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKISGAL 178
             F K  E   E+ K  Q W KAL + ++L+G   + +R       +++ I+N +S  L
Sbjct:   124 FKKTCEDKPEDQK--QRWVKALTDISNLAG---EDLRNGPTEAFMVKKIANDVSNKL 175

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=ISS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2160472 AT5G41540 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 5.3e-32, P = 5.3e-32
 Identities = 76/178 (42%), Positives = 111/178 (62%)

Query:     1 MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNA 60
             MASS  + +KY VF SF G D R  F SHL    + + I  F D ++ RG  I   LV A
Sbjct:     1 MASSSTHVRKYHVFPSFHGSDVRRKFLSHLRFHFAIKGIVAFKDQEIERGQRIGPELVQA 60

Query:    61 IEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGD 120
             I  S +S+++ S++YPSS WCLDELV+IL+CK++  QI++P+FY +DPSDVR Q+G FG 
Sbjct:    61 IRESRVSLVVLSKNYPSSSWCLDELVEILKCKEDQEQIVMPIFYEIDPSDVRKQSGDFGK 120

Query:   121 SFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSK---RILQYISNKIS 175
             +F K      +  K  Q W  AL EAA++ G    S+   ++++   +I+  +SNK++
Sbjct:   121 AFGKTCVGKTKEVK--QRWTNALTEAANIGG--EHSLNWTDEAEMIEKIVADVSNKLN 174

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 9.9e-32, P = 9.9e-32
 Identities = 73/166 (43%), Positives = 108/166 (65%)

Query:    10 KYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISV 68
             K DVFVSFRGED R  F SHL+    R  I+ F DD  L RG  IS  L++AI+ S  ++
Sbjct:    17 KTDVFVSFRGEDVRKTFVSHLFCEFDRMGIKAFRDDLDLQRGKSISPELIDAIKGSRFAI 76

Query:    69 IIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEER 128
             ++ S +Y +S WCLDEL+KI+EC K+    ++P+FY VDPSDVR Q GSFG+      ++
Sbjct:    77 VVVSRNYAASSWCLDELLKIMECNKD---TIVPIFYEVDPSDVRRQRGSFGEDVESHSDK 133

Query:   129 FKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKI 174
                  +K+  W++ALK+ A++SG  S++   +   K+I++ IS+K+
Sbjct:   134 -----EKVGKWKEALKKLAAISGEDSRNWDDSKLIKKIVKDISDKL 174

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.1e-31, P = 1.1e-31
 Identities = 73/177 (41%), Positives = 112/177 (63%)

Query:     2 ASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAI 61
             A+S   N K+DVF SF G D R  F SH+  +  R+ I TFID+ + R   I   L  AI
Sbjct:    89 ATSVSRNWKHDVFPSFHGADVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGPELKEAI 148

Query:    62 EASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDS 121
             + S I++++ S  Y SS WCLDEL +I++C++   QI++ +FY VDP+D++ QTG FG +
Sbjct:   149 KGSKIAIVLLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVDPTDIKKQTGEFGKA 208

Query:   122 FSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKISGAL 178
             F+K   R K   ++++ WRKAL++ A+++G+ S S R  N++  I + IS  +S  L
Sbjct:   209 FTKTC-RGKPK-EQVERWRKALEDVATIAGYHSHSWR--NEADMI-EKISTDVSNML 260

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01250017 tir-nbs-lrr resistance protein (1125 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-46
pfam01582	135	pfam01582, TIR, TIR domain	4e-44
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	8e-42
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	7e-17
pfam13676	102	pfam13676, TIR_2, TIR domain	4e-14

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  161 bits (408), Expect = 4e-46
 Identities = 76/177 (42%), Positives = 111/177 (62%), Gaps = 5/177 (2%)

Query: 2   ASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAI 61
           +SS   N  YDVF SF GED R  F SH    L R+ I  F D+++ R   +   L  AI
Sbjct: 4   SSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAI 63

Query: 62  EASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDS 121
             S I+V++FS++Y SS WCL+EL++I+ CK+E  Q++IPVFY +DPS VR QTG FG++
Sbjct: 64  RDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEA 123

Query: 122 FSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKISGAL 178
           F K  +   E+ K    W++AL + A++ G+ SQ+    N++K I + I+N + G L
Sbjct: 124 FEKTCQNKTEDEKIQ--WKQALTDVANILGYHSQN--WPNEAKMI-EEIANDVLGKL 175

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  142 bits (360), Expect = 4e-44
 Identities = 63/135 (46%), Positives = 88/135 (65%), Gaps = 3/135 (2%)

Query: 13  VFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIF 71
           VFVSF G+D RD F SHL   L  + I+  IDD     G+ I E+L  AIE S  +++IF
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 72  SESYPSSRWCLDELVKILECKKE--YAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERF 129
           S +Y SS WCLDELV+I++C  E    ++++P+FY+VDPSDVR Q+G FG +F K  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 130 KENSKKLQTWRKALK 144
            +   K++ W+KAL 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  136 bits (345), Expect = 8e-42
 Identities = 61/142 (42%), Positives = 79/142 (55%), Gaps = 4/142 (2%)

Query: 10  KYDVFVSFRG-EDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISV 68
           +YDVF+S+ G ED R+ F SHL   L    +  FIDD    G    E +  AIE S I++
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLEEIDEAIEKSRIAI 59

Query: 69  IIFSESYPSSRWCLDELVKILECKKEYAQI-LIPVFYRVDPSDVRNQTGSFGDSFSKLEE 127
           ++ S +Y  S WCLDELV  LE   E   + +IP+FY V PSDVR Q G F   F K   
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 128 RFKENSKKLQTWRKALKEAASL 149
           ++ E  +K Q W+KAL    S 
Sbjct: 120 KWPE-DEKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 74.1 bits (182), Expect = 7e-17
 Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 17/150 (11%)

Query: 12  DVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVII 70
           DVF++ RG DT+    + LY  LSR N++ F+D++ +  GD++ + + +AI    + V +
Sbjct: 28  DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAV 87

Query: 71  FSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFK 130
           FS  Y  S +CL EL  I+E KK     +IP+F  V PS +R            + +   
Sbjct: 88  FSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLR------------VVDNGT 131

Query: 131 ENSKKLQTWRKALKEAASLSGFPSQSIRIN 160
              ++++ +  AL+EA    G    S++ N
Sbjct: 132 CPDEEIRRFNWALEEAKYTVGLTFDSLKGN 161

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 64.5 bits (158), Expect = 4e-14
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 13  VFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFS 72
           VF+S+   D    +   L  AL    I+ ++D  +  G++  + +  A+ ++ + +++ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 73  ESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDV 111
            +Y +S WC  E    LE  K     LIPV  R++  ++
Sbjct: 59  PAYLASPWCRAEWGAALERGK----RLIPV--RLEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.94
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.93
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.76
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.44
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.59
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.02
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	96.89
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	93.93
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	91.58
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	91.51
COG4271	233	Predicted nucleotide-binding protein containing TI	82.47
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	80.26

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=1e-49  Score=312.05  Aligned_cols=155  Identities=30%  Similarity=0.513  Sum_probs=143.1

Q ss_pred             CCCCCCCcccEEEecccccCcccHHHHHHHHhhcCCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChhh
Q 042466            3 SSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRWC   81 (178)
Q Consensus         3 ~~~~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   81 (178)
                      |||+...+|||||||+|+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||++|++|+||
T Consensus        19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC   98 (187)
T PLN03194         19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC   98 (187)
T ss_pred             cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence            4577888899999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhccceeeeEEeecCccccccc-cCchHHHHHHHHHhhhhchhHHHHHHHHHHHhhhhcCcccC--CCc
Q 042466           82 LDELVKILECKKEYAQILIPVFYRVDPSDVRNQ-TGSFGDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQ--SIR  158 (178)
Q Consensus        82 ~~EL~~i~~~~~~~~~~viPVfy~v~psdV~~~-~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~--~~~  158 (178)
                      ++||++|+++.    ..||||||+|+|+|||+| .|.             .+.+++++||.||++|++++|++++  ++.
T Consensus        99 LdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~  161 (187)
T PLN03194         99 LHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGN  161 (187)
T ss_pred             HHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCC
Confidence            99999999874    379999999999999997 432             1368999999999999999999886  456


Q ss_pred             hHHHHHHHHHHHHHhh
Q 042466          159 INNKSKRILQYISNKI  174 (178)
Q Consensus       159 ~~~~i~~Iv~~i~~~l  174 (178)
                      +.++|++||++|.++|
T Consensus       162 e~e~i~~iv~~v~k~l  177 (187)
T PLN03194        162 WSEVVTMASDAVIKNL  177 (187)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8999999999999987

>PLN03210 Resistant to P

Probab=100.00  E-value=7e-49  Score=378.39  Aligned_cols=174  Identities=41%  Similarity=0.704  Sum_probs=164.8

Q ss_pred             CCCC--CCCCCcccEEEecccccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEecCCCCCC
Q 042466            1 MASS--YRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSS   78 (178)
Q Consensus         1 m~~~--~~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S   78 (178)
                      ||||  +++.++|||||||||+|+|++|++||+.+|.++||.+|.|+++++|+.|.+++.+||++|+++|||||++|++|
T Consensus         1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s   80 (1153)
T PLN03210          1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS   80 (1153)
T ss_pred             CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence            6776  67899999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhhhccceeeeEEeecCccccccccCchHHHHHHHHHhhhhchhHHHHHHHHHHHhhhhcCcccCCC-
Q 042466           79 RWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSI-  157 (178)
Q Consensus        79 ~wc~~EL~~i~~~~~~~~~~viPVfy~v~psdV~~~~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~~~-  157 (178)
                      .||++||++|++|+++.+++|+||||+|+|+|||+|+|.||++|.++++..  +++++++||+||++||+++||++.+. 
T Consensus        81 ~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~  158 (1153)
T PLN03210         81 SWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWP  158 (1153)
T ss_pred             hHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCC
Confidence            999999999999999999999999999999999999999999999988753  47899999999999999999999764 


Q ss_pred             chHHHHHHHHHHHHHhhcC
Q 042466          158 RINNKSKRILQYISNKISG  176 (178)
Q Consensus       158 ~~~~~i~~Iv~~i~~~l~~  176 (178)
                      .+.+.|++||++|+++|+.
T Consensus       159 ~E~~~i~~Iv~~v~~~l~~  177 (1153)
T PLN03210        159 NEAKMIEEIANDVLGKLNL  177 (1153)
T ss_pred             CHHHHHHHHHHHHHHhhcc
Confidence            5889999999999999964

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.94  E-value=2.9e-28  Score=184.08  Aligned_cols=132  Identities=34%  Similarity=0.590  Sum_probs=116.1

Q ss_pred             EEEecccccCcccHHHHHHHHhhcC--CcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhHHHHHHHH
Q 042466           13 VFVSFRGEDTRDNFTSHLYSALSRQ--NIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKIL   89 (178)
Q Consensus        13 VFIS~~~~D~~~~fv~~L~~aL~~~--gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~   89 (178)
                      |||||++.+.+..|+++|..+|+++  |+++|+++ ++.+|..+.++|.++|++|+++|+|+|++|++|+||+.||..++
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999433578999999999999  99999999 99999999999999999999999999999999999999999999


Q ss_pred             Hhhhhcc--ceeeeEEeecCccccc-cccCchHHHHHHHHHhhhhc--hhHHHHHHHHHH
Q 042466           90 ECKKEYA--QILIPVFYRVDPSDVR-NQTGSFGDSFSKLEERFKEN--SKKLQTWRKALK  144 (178)
Q Consensus        90 ~~~~~~~--~~viPVfy~v~psdV~-~~~g~f~~~f~~~~~~~~~~--~~~v~~W~~AL~  144 (178)
                      ++..+.+  ..|+||||++.+++++ .+.+.|+..|.........+  .++...|++++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            9986644  8999999999999999 79999999998877655443  578899999875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.93  E-value=1.2e-25  Score=168.04  Aligned_cols=137  Identities=42%  Similarity=0.722  Sum_probs=115.3

Q ss_pred             cccEEEeccc-ccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhHHHHHHH
Q 042466           10 KYDVFVSFRG-EDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKI   88 (178)
Q Consensus        10 ~ydVFIS~~~-~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i   88 (178)
                      +|||||||++ ++....|+.+|..+|...|+.+|.|+....|.... +|.++|++|+++|+|+||+|..|+||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            5999999998 45557899999999999999999998433333333 999999999999999999999999999999999


Q ss_pred             HHhhhh-ccceeeeEEeecCccccccccCchHHHHHHHHHhhhhchhHHHHHHHHHHHhhh
Q 042466           89 LECKKE-YAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKEAAS  148 (178)
Q Consensus        89 ~~~~~~-~~~~viPVfy~v~psdV~~~~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~  148 (178)
                      +++..+ ...+||||+++..|+++..+.+.++..+......+.++..+ +.|+.++..+.+
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            987654 66899999999999999999999999998775555443333 789999987754

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.76  E-value=3.2e-19  Score=127.10  Aligned_cols=87  Identities=31%  Similarity=0.555  Sum_probs=75.5

Q ss_pred             EEEecccccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhHHHHHHHHHhh
Q 042466           13 VFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECK   92 (178)
Q Consensus        13 VFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~   92 (178)
                      |||||+++|  ..++..|...|++.|+++|+|.++.+|+.+.+.|.++|++|+..|+++|++|..|+||..|+..+.+  
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            899999999  4799999999999999999999889999999999999999999999999999999999999999843  


Q ss_pred             hhccceeeeEEee
Q 042466           93 KEYAQILIPVFYR  105 (178)
Q Consensus        93 ~~~~~~viPVfy~  105 (178)
                        .+..|+||.++
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              45589999954

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.44  E-value=4.1e-13  Score=118.08  Aligned_cols=143  Identities=21%  Similarity=0.382  Sum_probs=108.0

Q ss_pred             CCCCcccEEEecccccCcccHHHHHHHHhhcCCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCC----CCh-
Q 042466            6 RNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYP----SSR-   79 (178)
Q Consensus         6 ~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~----~S~-   79 (178)
                      +.+.+.||||||+.. +.+..++-|...|+-+|++||+|- .+..|+. ...+.+.|...+.+|+|+|||..    +.. 
T Consensus       608 ~~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~n  685 (832)
T KOG3678|consen  608 MLSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDN  685 (832)
T ss_pred             cccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence            557789999999876 457899999999999999999998 8888865 45889999999999999999964    444 


Q ss_pred             ---hhHHHHHHHHHhhhhccceeeeEEeecCccccccccCchHHHHHHHHHhhhhchhHHHHHHHHHHHhhhhcCcccCC
Q 042466           80 ---WCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQS  156 (178)
Q Consensus        80 ---wc~~EL~~i~~~~~~~~~~viPVfy~v~psdV~~~~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~~  156 (178)
                         |.-.||..+++|.    ..|||||-.           .|.  |..-+..+++|...          |..+.|....+
T Consensus       686 CeDWVHKEl~~Afe~~----KNIiPI~D~-----------aFE--~Pt~ed~iPnDirm----------i~kyNGvKWvH  738 (832)
T KOG3678|consen  686 CEDWVHKELKCAFEHQ----KNIIPIFDT-----------AFE--FPTKEDQIPNDIRM----------ITKYNGVKWVH  738 (832)
T ss_pred             HHHHHHHHHHHHHHhc----CCeeeeecc-----------ccc--CCCchhcCcHHHHH----------HHhccCeeeeh
Confidence               5555666666554    489999821           111  11112222223333          44558999988


Q ss_pred             CchHHHHHHHHHHHHHhhcCC
Q 042466          157 IRINNKSKRILQYISNKISGA  177 (178)
Q Consensus       157 ~~~~~~i~~Iv~~i~~~l~~~  177 (178)
                      .+++.++++||+.|.+.+|++
T Consensus       739 dYQdA~maKvvRFitGe~nRt  759 (832)
T KOG3678|consen  739 DYQDACMAKVVRFITGELNRT  759 (832)
T ss_pred             hhHHHHHHHHHHHHhccccCC
Confidence            899999999999999999874

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.59  E-value=9.8e-08  Score=71.14  Aligned_cols=90  Identities=21%  Similarity=0.400  Sum_probs=48.5

Q ss_pred             ccEEEecccccCcccHHHHHHHHhhcC-------CcEE-Ee---------cC-CCCCcccchHHHHHHHHhcceeeEEec
Q 042466           11 YDVFVSFRGEDTRDNFTSHLYSALSRQ-------NIQT-FI---------DD-QLNRGDEISESLVNAIEASAISVIIFS   72 (178)
Q Consensus        11 ydVFIS~~~~D~~~~fv~~L~~aL~~~-------gi~v-f~---------d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S   72 (178)
                      |.|||||++.|. ...+..|...+...       ++.. |.         +. +....+.|...|.++|..|.++||+++
T Consensus         1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            689999999984 23777777777663       2221 11         11 222344788899999999999999999


Q ss_pred             CCCCCChhhHHHHHHHHHhhhhccceeeeEEee
Q 042466           73 ESYPSSRWCLDELVKILECKKEYAQILIPVFYR  105 (178)
Q Consensus        73 ~~y~~S~wc~~EL~~i~~~~~~~~~~viPVfy~  105 (178)
                      ++-..|.|+..|+..+++    .+..||.|.+.
T Consensus        80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK----KGKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTT----T---EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHH----CCCCEEEEECC
Confidence            999999999999998876    45578877653

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.02  E-value=3.5e-05  Score=58.26  Aligned_cols=64  Identities=20%  Similarity=0.370  Sum_probs=52.2

Q ss_pred             cEEEecccccCc-ccHHHHHHHHhhcC-CcEEEecC-CCCC--cccchHHHHHHHHhcceeeEEecCCC
Q 042466           12 DVFVSFRGEDTR-DNFTSHLYSALSRQ-NIQTFIDD-QLNR--GDEISESLVNAIEASAISVIIFSESY   75 (178)
Q Consensus        12 dVFIS~~~~D~~-~~fv~~L~~aL~~~-gi~vf~d~-~~~~--G~~i~~~i~~aI~~S~~~Ivv~S~~y   75 (178)
                      .|||||+..... ...|..|...|++. |+.|.+|. +...  +.....=+.+.+++++..|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999875432 36799999999999 99999999 6633  65666677788999999999999543

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=96.89  E-value=0.0032  Score=46.89  Aligned_cols=77  Identities=19%  Similarity=0.241  Sum_probs=60.1

Q ss_pred             cEEEecccccCcccHHHHHHHHhhcCCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCC-------------CC
Q 042466           12 DVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESY-------------PS   77 (178)
Q Consensus        12 dVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y-------------~~   77 (178)
                      .|||.|+ .|  ...+..+...|+..|+.+..-. ....|..+.+.+.+.+.+|+.+|++++|+=             ..
T Consensus         1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            4899998 55  3788899999998888765433 568899999999999999999999999952             12


Q ss_pred             ChhhHHHHHHHHHh
Q 042466           78 SRWCLDELVKILEC   91 (178)
Q Consensus        78 S~wc~~EL~~i~~~   91 (178)
                      ....+.|+..++..
T Consensus        78 R~NVifE~G~f~g~   91 (125)
T PF10137_consen   78 RQNVIFELGLFIGK   91 (125)
T ss_pred             ccceeehhhHHHhh
Confidence            33466788777654

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=93.93  E-value=0.25  Score=33.75  Aligned_cols=67  Identities=18%  Similarity=0.204  Sum_probs=48.2

Q ss_pred             cEEEecccccCcccHHHHHHHHhhcCCcEEEecCCC-CCcccchHHHHHHHHhcceeeEEecCCCCCCh
Q 042466           12 DVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQL-NRGDEISESLVNAIEASAISVIIFSESYPSSR   79 (178)
Q Consensus        12 dVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~-~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~   79 (178)
                      .||||-.-.|. ..--..|.+.|.+.|.....-+.+ ..+....+.+++.|++|+++|.++-..|-..+
T Consensus         1 rVFiSSt~~Dl-~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~   68 (83)
T PF13271_consen    1 RVFISSTFRDL-KEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP   68 (83)
T ss_pred             CEEEecChhhH-HHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence            48999877775 344567888888777665432212 22556667889999999999999999996543

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=91.58  E-value=0.24  Score=41.41  Aligned_cols=102  Identities=19%  Similarity=0.181  Sum_probs=69.2

Q ss_pred             CCCCcccEEEecccccCcccHHHHHHHHhh--cCCcEEEecCC----CCCcccchHHHHHHH-HhcceeeEEecCCCCCC
Q 042466            6 RNNKKYDVFVSFRGEDTRDNFTSHLYSALS--RQNIQTFIDDQ----LNRGDEISESLVNAI-EASAISVIIFSESYPSS   78 (178)
Q Consensus         6 ~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~--~~gi~vf~d~~----~~~G~~i~~~i~~aI-~~S~~~Ivv~S~~y~~S   78 (178)
                      ...+.||+=|||.|+-  +..|+.....++  ...+..|+|-+    +-+| ++..-+...- ..|+..+|....+|...
T Consensus       173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~-sL~~~L~~~Y~~rC~~~~VF~~~~Y~~K  249 (329)
T COG4916         173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPG-SLVSTLDPGYDIRCVVTTVFNTGSYICK  249 (329)
T ss_pred             ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCc-cHHHhcccccCceEEEEEEEeCCceEEe
Confidence            4667899999999986  479999999999  44567788862    2233 3332232322 35888999999999999


Q ss_pred             hhhHHHHHHHHHhhhhccceeeeEEe-ecCccccc
Q 042466           79 RWCLDELVKILECKKEYAQILIPVFY-RVDPSDVR  112 (178)
Q Consensus        79 ~wc~~EL~~i~~~~~~~~~~viPVfy-~v~psdV~  112 (178)
                      .||.-|...+-+..  .-....||-| +++.+-+.
T Consensus       250 ~~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~d  282 (329)
T COG4916         250 STCHIEGLEGRLNP--ILDTGFRIKYLYADNIAID  282 (329)
T ss_pred             eeeccchhhccccc--cccccceEEEEecCCcccc
Confidence            99999877764321  1235566665 45555443

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=91.51  E-value=1.9  Score=30.79  Aligned_cols=67  Identities=16%  Similarity=0.102  Sum_probs=49.3

Q ss_pred             ccHHHHHHHHhhcCCcEEEecC--CCC---Cc----ccchHHHHHHHHhcceeeEEecCCCCCChhhHHHHHHHHHh
Q 042466           24 DNFTSHLYSALSRQNIQTFIDD--QLN---RG----DEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILEC   91 (178)
Q Consensus        24 ~~fv~~L~~aL~~~gi~vf~d~--~~~---~G----~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~   91 (178)
                      ..+...+.++|++.|+.++...  +..   .+    ..+.+.-.++|++|++.|+++...- .++-+.-|+..+...
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC
Confidence            5788999999999999998765  221   12    3344455668999999999997755 567788899888653

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=82.47  E-value=5.1  Score=32.37  Aligned_cols=76  Identities=20%  Similarity=0.229  Sum_probs=57.0

Q ss_pred             cEEEecccccCcccHHHHHHHHhhcC-C-cEEEecCCCCCcccchHHHHHHHHhcceeeEEecCCCC--------C----
Q 042466           12 DVFVSFRGEDTRDNFTSHLYSALSRQ-N-IQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYP--------S----   77 (178)
Q Consensus        12 dVFIS~~~~D~~~~fv~~L~~aL~~~-g-i~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~--------~----   77 (178)
                      .|||-|+++    ..+.....+|.+. - ..+|.|.-...|..+.+.+.+-|.+++.+|++.+|+=.        +    
T Consensus        84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~p  159 (233)
T COG4271          84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFP  159 (233)
T ss_pred             eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhccc
Confidence            899998653    3777777777743 3 45677777788999999999999999999999999843        1    


Q ss_pred             --ChhhHHHHHHHHHh
Q 042466           78 --SRWCLDELVKILEC   91 (178)
Q Consensus        78 --S~wc~~EL~~i~~~   91 (178)
                        .....-||..++..
T Consensus       160 raRqNVifELGm~mgr  175 (233)
T COG4271         160 RARQNVIFELGMFMGR  175 (233)
T ss_pred             cccccchhhHhhHHhh
Confidence              22255677776654

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=80.26  E-value=10  Score=24.48  Aligned_cols=61  Identities=18%  Similarity=0.205  Sum_probs=37.6

Q ss_pred             HHHHHHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhHHHHHHHHHhhhhccceee
Q 042466           28 SHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILI  100 (178)
Q Consensus        28 ~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~vi  100 (178)
                      .-|+.-|++.|+++-....          ..++++..+-.+++++|.+.-+.  -.++..+.+..+.++..||
T Consensus         8 ~a~~~~L~~~g~~v~~~~~----------~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl   68 (70)
T PF14258_consen    8 YALYQLLEEQGVKVERWRK----------PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL   68 (70)
T ss_pred             HHHHHHHHHCCCeeEEecc----------cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence            4577788888988754321          12344557889999999966553  3455555555555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	178
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		6e-32
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		6e-31
3h16_A	154	Crystal Structure Of A Bacteria Tir Domain, Pdtir F		9e-04

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  133 bits (334), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 105/167 (62%), Gaps = 8/167 (4%)
Query: 10  KYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISV 68
           KYDVF+SFRG DTR NF S LY  L R++I+TF DD +L  G   S  L + IE S  +V
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 69  IIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEER 128
           ++ SE+Y +S WCLDELV I++ +K+ +  ++P+FY V+P+ VR QTG   + F K   R
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127
Query: 129 FKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKIS 175
             E+ +K+  WR+AL   A LSG  S      +   +++  I+N+IS
Sbjct: 128 --EDPEKVLKWRQALTNFAQLSGDCS-----GDDDSKLVDKIANEIS 167

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 103/167 (61%), Gaps = 7/167 (4%)
Query: 10  KYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTF-IDDQLNRGDEISESLVNAIEASAISV 68
           +Y+VF+SFRG DTR+ FT  LY +L R  I TF  DD+L +G EI  +L+ AI+ S I V
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 69  IIFSESYPSSRWCLDELVKILECKKEYA-QILIPVFYRVDPSDVRNQTGSFGDSFSKLEE 127
            I S  Y  S+WCL EL +I+  ++E   +I++P+FY VDPSDVR+QTG +  +F K   
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 128 RFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISNKI 174
           +F  + + +Q W+ ALK+   L G+    I  N+K   I   +S  I
Sbjct: 155 KF--DGQTIQNWKDALKKVGDLKGW---HIGKNDKQGAIADKVSADI 196

>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From Paracoccus Denitrificans Length = 154

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 11  YDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVI 69
           +D+F+S   ED  D F   L   L     + + DD  L  GD +  S+   + +S   ++
Sbjct: 21  HDIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIV 79
Query: 70  IFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFS 123
           + S  +    W   EL  + + +      ++P++++V   +V + + +  D  +
Sbjct: 80  VLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLA 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	9e-89
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	3e-85
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	3e-70
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	6e-19
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	9e-10
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	2e-09
2js7_A	160	Myeloid differentiation primary response protein M	1e-06
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  256 bits (656), Expect = 9e-89
 Identities = 77/179 (43%), Positives = 108/179 (60%), Gaps = 12/179 (6%)

Query: 1   MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDEISESLVN 59
           M+S      KYDVF+SFRG DTR NF S LY  L R++I+TF DD+ L  G   S  L +
Sbjct: 1   MSSH--TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKS 58

Query: 60  AIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFG 119
            IE S  +V++ SE+Y +S WCLDELV I++ +K+ +  ++P+FY V+P+ VR QTG   
Sbjct: 59  PIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLA 118

Query: 120 DSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKSK---RILQYISNKIS 175
           + F K   R   + +K+  WR+AL   A LSG  S     ++ SK   +I   ISNK +
Sbjct: 119 EQFKKHASRE--DPEKVLKWRQALTNFAQLSGDCSG----DDDSKLVDKIANEISNKKT 171

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  248 bits (635), Expect = 3e-85
 Identities = 70/176 (39%), Positives = 100/176 (56%), Gaps = 5/176 (2%)

Query: 3   SSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDEISESLVNAI 61
           S    + +Y+VF+SFRG DTR+ FT  LY +L R  I TF DD  L +G EI  +L+ AI
Sbjct: 28  SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAI 87

Query: 62  EASAISVIIFSESYPSSRWCLDELVKILECKKEY-AQILIPVFYRVDPSDVRNQTGSFGD 120
           + S I V I S  Y  S+WCL EL +I+  ++E   +I++P+FY VDPSDVR+QTG +  
Sbjct: 88  DQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKK 147

Query: 121 SFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRINNKS-KRILQYISNKIS 175
           +F K   +F      +Q W+ ALK+   L G+             ++   I + IS
Sbjct: 148 AFRKHANKFDGQ--TIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHIS 201

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  208 bits (532), Expect = 3e-70
 Identities = 24/144 (16%), Positives = 59/144 (40%), Gaps = 4/144 (2%)

Query: 1   MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDEISESLVN 59
             +   +   +D+F+S   ED + +F   L   L     + + DD  L  GD +  S+  
Sbjct: 11  TNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDK 69

Query: 60  AIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFG 119
            + +S   +++ S  +    W   EL  + + +      ++P++++V   +V + + +  
Sbjct: 70  GLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMA 129

Query: 120 DSFSKLEERFKENSKKLQTWRKAL 143
           D  +        +  ++     A+
Sbjct: 130 DKLAFNTSTK--SVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 77.8 bits (192), Expect = 6e-19
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 3   SSYRNNKKYDVFVSFRGEDTRDNFTSHLYSAL--SRQNIQTFIDDQ-LNRGDEISESLVN 59
            S R +K YDV V    ED        L S L  S  +++ F+  +    G  I   L  
Sbjct: 3   GSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQ 60

Query: 60  AIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVR 112
           A+ +S   V++ +  +    WC  ++++ L          IP+   +  +   
Sbjct: 61  ALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYP 113

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 53.9 bits (129), Expect = 9e-10
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 14/120 (11%)

Query: 9   KKYDVFVSFRGEDTR---------DNFTSHLYSAL--SRQNIQTFIDD-QLNRGDEISES 56
           K YD ++S+   D           + F   +   +       + FI D  L       E 
Sbjct: 1   KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIED 60

Query: 57  LVNAIEASAISVIIFSESYP-SSRWCLDELVKIL-ECKKEYAQILIPVFYRVDPSDVRNQ 114
           +   ++ S   +I+ + +Y     W + EL   L          +I +        +  Q
Sbjct: 61  VARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQ 120

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 53.4 bits (128), Expect = 2e-09
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 7   NNKKYDVFVSFRGEDTRDNFTSHLYSAL--SRQNIQTFIDDQ-LNRGDEISESLVNAIEA 63
            N ++  F+S+   D      + L   L     +I   + +   + G  ISE++V+ IE 
Sbjct: 32  RNVRFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEK 90

Query: 64  SAISVIIFSESYPSSRWCLDELVKIL-ECKKEYAQILIPVFYRVDP 108
           S  S+ + S ++  + WC  E          E +  +I +     P
Sbjct: 91  SYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIP 136

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 6   RNNKKYDVFVSFRGEDTRDNFTSHLYSAL--SRQNIQTFIDDQ-LNRGDEISESLVNAIE 62
              +++D F+ +   D +  F   +   L  +   ++  + D+ +  G  +       IE
Sbjct: 12  HMPERFDAFICYCPSDIQ--FVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIE 69

Query: 63  A-SAISVIIFSESYPSSRWCLDELVKIL-ECKKEYAQILIPVFYRVDPSDVR 112
                 V++ S+ Y  S+ C  +    L      + + LIP+ Y+    +  
Sbjct: 70  KRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFP 121

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 7   NNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQ---TFIDDQLNRGDEISESLVNAIEA 63
            N  YD FVS+   D      + +   L   N              G  I ++++++IE 
Sbjct: 2   RNIXYDAFVSYSERD-AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEK 60

Query: 64  SAISVIIFSESYPSSRWCLDELVKIL-ECKKEYAQILIPVFY 104
           S  +V + SE++  S W   EL         E     I +  
Sbjct: 61  SHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILL 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 33/182 (18%)

Query: 21  DTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSR- 79
           D       + Y  +       F+D+  +  D + +   + +    I  II       S  
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDN-FDCKD-VQDMPKSILSKEEIDHII-MSKDAVSGT 64

Query: 80  ----WCL----DELVK-----ILECKKEYAQILIPVFYR-VDPS-------DVRNQTGSF 118
               W L    +E+V+     +L     Y  ++ P+      PS       + R++  + 
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 119 GDSFSKLEERFKENSKKLQTWRKALKEAASLS-----GFPSQSIRINN-KSKRILQYISN 172
              F+K      +   KL+     L+ A ++      G     + ++   S ++   +  
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 173 KI 174
           KI
Sbjct: 183 KI 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.92
2js7_A	160	Myeloid differentiation primary response protein M	99.92
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.91
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.75
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.0
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	96.74
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	92.12
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	86.77

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=9.7e-60  Score=368.11  Aligned_cols=172  Identities=44%  Similarity=0.699  Sum_probs=145.0

Q ss_pred             CCCCCCCCCcccEEEecccccCcccHHHHHHHHhhcCCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCCh
Q 042466            1 MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSR   79 (178)
Q Consensus         1 m~~~~~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~   79 (178)
                      |+  ||.+++|||||||||+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|+
T Consensus         1 ms--ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~   78 (176)
T 3jrn_A            1 MS--SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASS   78 (176)
T ss_dssp             --------CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCH
T ss_pred             CC--CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCCh
Confidence            66  67889999999999999999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhhhccceeeeEEeecCccccccccCchHHHHHHHHHhhhhchhHHHHHHHHHHHhhhhcCcccCCCch
Q 042466           80 WCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRI  159 (178)
Q Consensus        80 wc~~EL~~i~~~~~~~~~~viPVfy~v~psdV~~~~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~~~~~  159 (178)
                      ||++||++|++|.++++++||||||+|+|++||+|+|.||++|.+|+++  .+++++++||.||++||+++||++. ..+
T Consensus        79 WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~-~~e  155 (176)
T 3jrn_A           79 WCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG-DDD  155 (176)
T ss_dssp             HHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC-SCH
T ss_pred             hHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC-CCH
Confidence            9999999999999889999999999999999999999999999999987  5689999999999999999999995 458


Q ss_pred             HHHHHHHHHHHHHhhcCC
Q 042466          160 NNKSKRILQYISNKISGA  177 (178)
Q Consensus       160 ~~~i~~Iv~~i~~~l~~~  177 (178)
                      .++|++||++|+++|+++
T Consensus       156 ~~~i~~Iv~~v~~~l~~~  173 (176)
T 3jrn_A          156 SKLVDKIANEISNKKTIY  173 (176)
T ss_dssp             HHHHHHHHHHHHTTCC--
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            999999999999999864

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=3.3e-58  Score=365.79  Aligned_cols=170  Identities=41%  Similarity=0.711  Sum_probs=158.6

Q ss_pred             CCCCCcccEEEecccccCcccHHHHHHHHhhcCCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhHH
Q 042466            5 YRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLD   83 (178)
Q Consensus         5 ~~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~   83 (178)
                      ++++++|||||||||+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|||||+||++|+||++
T Consensus        30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~  109 (204)
T 3ozi_A           30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM  109 (204)
T ss_dssp             ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred             CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence            56789999999999999999999999999999999999998 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhh-ccceeeeEEeecCccccccccCchHHHHHHHHHhhhhchhHHHHHHHHHHHhhhhcCcccCCCc-hHH
Q 042466           84 ELVKILECKKE-YAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIR-INN  161 (178)
Q Consensus        84 EL~~i~~~~~~-~~~~viPVfy~v~psdV~~~~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~~~~-~~~  161 (178)
                      ||++|++|+++ ++++||||||+|+|++||+|+|.||++|.+|++++.  ++++++||.||++||+++||++.+.. +.+
T Consensus       110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~  187 (204)
T 3ozi_A          110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGA  187 (204)
T ss_dssp             HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCHHH
T ss_pred             HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCCHHH
Confidence            99999999875 578999999999999999999999999999998874  68999999999999999999998875 568


Q ss_pred             HHHHHHHHHHHhhcC
Q 042466          162 KSKRILQYISNKISG  176 (178)
Q Consensus       162 ~i~~Iv~~i~~~l~~  176 (178)
                      +|++||++|++||++
T Consensus       188 ~i~~Iv~di~~kl~~  202 (204)
T 3ozi_A          188 IADKVSADIWSHISK  202 (204)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999999976

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=2.8e-36  Score=230.49  Aligned_cols=118  Identities=19%  Similarity=0.404  Sum_probs=110.6

Q ss_pred             CCCCcccEEEecccccCcccHHHHHHHHhhcCCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhHHH
Q 042466            6 RNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDE   84 (178)
Q Consensus         6 ~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~E   84 (178)
                      ++.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|++|++|.||++|
T Consensus        16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E   94 (154)
T 3h16_A           16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE   94 (154)
T ss_dssp             --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred             CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence            4568899999999999 56899999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhccceeeeEEeecCccccccccCchHHHHHH
Q 042466           85 LVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSK  124 (178)
Q Consensus        85 L~~i~~~~~~~~~~viPVfy~v~psdV~~~~g~f~~~f~~  124 (178)
                      |..++++..+++.+||||||+++|++|++|.|.|++.|..
T Consensus        95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~  134 (154)
T 3h16_A           95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAF  134 (154)
T ss_dssp             HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred             HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhh
Confidence            9999998877888999999999999999999999988753

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=5.6e-31  Score=199.95  Aligned_cols=137  Identities=18%  Similarity=0.276  Sum_probs=94.5

Q ss_pred             CCCCCcccEEEecccccCcccHHHHHHHHhhc--CCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChhh
Q 042466            5 YRNNKKYDVFVSFRGEDTRDNFTSHLYSALSR--QNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRWC   81 (178)
Q Consensus         5 ~~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~--~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   81 (178)
                      +..++.|||||||+++|+  .||.+|..+|++  .|+++|+++ ++.+|+.+.++|.++|++|+++|+|+|+||++|.||
T Consensus         5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc   82 (146)
T 3ub2_A            5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC   82 (146)
T ss_dssp             CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred             CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence            456778999999999996  689999999998  599999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhccceeeeEEeecCccccccccCch-HHHHHHHHHhhhhchhHHHHHHHHH
Q 042466           82 LDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSF-GDSFSKLEERFKENSKKLQTWRKAL  143 (178)
Q Consensus        82 ~~EL~~i~~~~~~~~~~viPVfy~v~psdV~~~~g~f-~~~f~~~~~~~~~~~~~v~~W~~AL  143 (178)
                      +.|+..++.+......+||||||+++++++....+.+ ...+..+...+....+.|.+|++||
T Consensus        83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence            9999999998633344778999999877664433211 0111112233333357788998775

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.92  E-value=7.5e-27  Score=177.54  Aligned_cols=104  Identities=21%  Similarity=0.353  Sum_probs=92.7

Q ss_pred             CCCcccEEEecccccCcccHHHH-HHHHhhcC--CcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhH
Q 042466            7 NNKKYDVFVSFRGEDTRDNFTSH-LYSALSRQ--NIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCL   82 (178)
Q Consensus         7 ~~~~ydVFIS~~~~D~~~~fv~~-L~~aL~~~--gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~   82 (178)
                      .++.|||||||+++|+  .||.+ |..+|++.  |+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|++|++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4678999999999996  79996 99999986  99999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-hhhccceeeeEEee-cCccccc
Q 042466           83 DELVKILEC-KKEYAQILIPVFYR-VDPSDVR  112 (178)
Q Consensus        83 ~EL~~i~~~-~~~~~~~viPVfy~-v~psdV~  112 (178)
                      .|+..++.+ ....+.+||||||+ +.+..+.
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            999998853 45567899999994 5554443

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.92  E-value=4.2e-26  Score=175.42  Aligned_cols=102  Identities=19%  Similarity=0.286  Sum_probs=91.9

Q ss_pred             CCCCCcccEEEecccccCcccHHHHHHHHhhcC--CcEEEecC-CCCCcccchHHHHHHHH-hcceeeEEecCCCCCChh
Q 042466            5 YRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQ--NIQTFIDD-QLNRGDEISESLVNAIE-ASAISVIIFSESYPSSRW   80 (178)
Q Consensus         5 ~~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~--gi~vf~d~-~~~~G~~i~~~i~~aI~-~S~~~Ivv~S~~y~~S~w   80 (178)
                      .+.++.|||||||+++|  ..||.+|..+|++.  |+++|+++ ++.+|+.+.++|.++|+ +|+.+|+|+|++|++|.|
T Consensus        11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w   88 (160)
T 2js7_A           11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE   88 (160)
T ss_dssp             SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred             CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence            34578899999999999  48999999999984  69999999 99999999999999999 799999999999999999


Q ss_pred             hHHHHHHHHHhh-hhccceeeeEEeecCc
Q 042466           81 CLDELVKILECK-KEYAQILIPVFYRVDP  108 (178)
Q Consensus        81 c~~EL~~i~~~~-~~~~~~viPVfy~v~p  108 (178)
                      |+.|+..++++. .+.+.+||||||+.-+
T Consensus        89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            999999999875 4556799999997654

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.91  E-value=6.1e-26  Score=177.40  Aligned_cols=105  Identities=21%  Similarity=0.396  Sum_probs=88.8

Q ss_pred             CCCCCcccEEEecccccCcccHHHH-HHHHhhc--CCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChh
Q 042466            5 YRNNKKYDVFVSFRGEDTRDNFTSH-LYSALSR--QNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRW   80 (178)
Q Consensus         5 ~~~~~~ydVFIS~~~~D~~~~fv~~-L~~aL~~--~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~w   80 (178)
                      ...++.|||||||+++|+  .||.. |..+|++  .|+++|+|+ ++.+|+.+.++|.++|++|+.+|+|+|++|++|+|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            456789999999999995  89975 9999998  899999999 99999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHh-hhhccceeeeEEee-cCcccc
Q 042466           81 CLDELVKILEC-KKEYAQILIPVFYR-VDPSDV  111 (178)
Q Consensus        81 c~~EL~~i~~~-~~~~~~~viPVfy~-v~psdV  111 (178)
                      |+.|+..++.+ .++++.+||||||+ +.+.++
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~l  140 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYCI  140 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCCCGGGS
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCCChHHC
Confidence            99999999865 35567799999996 444433

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.91  E-value=4e-25  Score=169.83  Aligned_cols=101  Identities=20%  Similarity=0.300  Sum_probs=89.7

Q ss_pred             CcccEEEecccccC---------cccHHHHHHH-Hhh-cCCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCC
Q 042466            9 KKYDVFVSFRGEDT---------RDNFTSHLYS-ALS-RQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYP   76 (178)
Q Consensus         9 ~~ydVFIS~~~~D~---------~~~fv~~L~~-aL~-~~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~   76 (178)
                      +.|||||||+++|+         +..||.+|.. .|+ +.|+++|+++ ++.+|+.+.++|.++|++|+.+|+|+|+||+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            47999999999996         3679988665 699 7999999999 9999999999999999999999999999997


Q ss_pred             -CChhhHHHHHHHHHhh-hhccceeeeEEeecCcc
Q 042466           77 -SSRWCLDELVKILECK-KEYAQILIPVFYRVDPS  109 (178)
Q Consensus        77 -~S~wc~~EL~~i~~~~-~~~~~~viPVfy~v~ps  109 (178)
                       .|.||+.|+..++.+. .+++..||||+|+-.+.
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence             9999999999999875 56678999999875543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.75  E-value=9.2e-19  Score=162.71  Aligned_cols=102  Identities=19%  Similarity=0.317  Sum_probs=91.4

Q ss_pred             CCCCcccEEEecccccCcccHH-HHHHHHhhc-----CCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCC
Q 042466            6 RNNKKYDVFVSFRGEDTRDNFT-SHLYSALSR-----QNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSS   78 (178)
Q Consensus         6 ~~~~~ydVFIS~~~~D~~~~fv-~~L~~aL~~-----~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S   78 (178)
                      ...+.|||||||+++|.  .|| ..|...|+.     .|+++|+++ ++.||+.+.++|.++|++||.+|+|+|++|+.|
T Consensus       666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            45789999999999995  788 679999985     589999999 999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhh-hhccceeeeEEeecCcc
Q 042466           79 RWCLDELVKILECK-KEYAQILIPVFYRVDPS  109 (178)
Q Consensus        79 ~wc~~EL~~i~~~~-~~~~~~viPVfy~v~ps  109 (178)
                      +||..|+..++.+. ++.+.+||||||+..|.
T Consensus       744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~  775 (844)
T 3j0a_A          744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ  775 (844)
T ss_dssp             TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence            99999999998764 56778999999975543

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.00  E-value=3.8e-06  Score=60.31  Aligned_cols=72  Identities=7%  Similarity=0.013  Sum_probs=52.2

Q ss_pred             CcccEEEecccccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhHHHHHHH
Q 042466            9 KKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKI   88 (178)
Q Consensus         9 ~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i   88 (178)
                      .+|.+||||+.+| .   ...|...|.+.|+..- |              +.|+.|.+.||+.+++..+|+||..|+..+
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            5799999999988 2   3344444434444322 1              568899999999999999999999998776


Q ss_pred             HHhhhhccceeeeEE
Q 042466           89 LECKKEYAQILIPVF  103 (178)
Q Consensus        89 ~~~~~~~~~~viPVf  103 (178)
                      .+    .+..|+-|.
T Consensus        64 ~~----~gkpIigV~   74 (111)
T 1eiw_A           64 RK----SSKPIITVR   74 (111)
T ss_dssp             TT----TTCCEEEEC
T ss_pred             HH----cCCCEEEEE
Confidence            43    455666664

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=96.74  E-value=0.01  Score=45.91  Aligned_cols=105  Identities=17%  Similarity=0.202  Sum_probs=71.2

Q ss_pred             cccEEEec--------------ccccCcccHHHHHHHHhhcCCcEEEecC-CCC-------C-cccchHHHHHHHHhcce
Q 042466           10 KYDVFVSF--------------RGEDTRDNFTSHLYSALSRQNIQTFIDD-QLN-------R-GDEISESLVNAIEASAI   66 (178)
Q Consensus        10 ~ydVFIS~--------------~~~D~~~~fv~~L~~aL~~~gi~vf~d~-~~~-------~-G~~i~~~i~~aI~~S~~   66 (178)
                      +--+|++|              ..+|.  .+.+.|..--....+-.|.|. +..       . -..|...|.+.|..|+.
T Consensus         5 rn~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~   82 (189)
T 3hyn_A            5 QNANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN   82 (189)
T ss_dssp             CCEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred             ccCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence            44578888              34553  455666655555566445664 431       2 24578899999999999


Q ss_pred             eeEEecCCCCCChhhHHHHHHHHHhhhhccceeeeEEeecC-ccccccccCchH
Q 042466           67 SVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVD-PSDVRNQTGSFG  119 (178)
Q Consensus        67 ~Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~viPVfy~v~-psdV~~~~g~f~  119 (178)
                      +|+++|++...|.|...|+..+++   +.+.+||-|.-+-. .+++..-.|.|.
T Consensus        83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~  133 (189)
T 3hyn_A           83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK  133 (189)
T ss_dssp             EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred             EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence            999999999999999999988872   23568887765422 345554445444

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=92.12  E-value=1.7  Score=32.46  Aligned_cols=85  Identities=9%  Similarity=0.058  Sum_probs=57.4

Q ss_pred             CCCcccEEEecc--cccCcccHHHHHHHHhhcCCcEEEecC--CCCCcccchHHHHHHHHhcceeeEEecC--CCCCChh
Q 042466            7 NNKKYDVFVSFR--GEDTRDNFTSHLYSALSRQNIQTFIDD--QLNRGDEISESLVNAIEASAISVIIFSE--SYPSSRW   80 (178)
Q Consensus         7 ~~~~ydVFIS~~--~~D~~~~fv~~L~~aL~~~gi~vf~d~--~~~~G~~i~~~i~~aI~~S~~~Ivv~S~--~y~~S~w   80 (178)
                      ....-.+++.-.  ..+....+...+.+.|++.|+.+|...  .......+...-.++|++|++.|.+++|  .-..++-
T Consensus         7 ~~~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~G   86 (161)
T 2f62_A            7 HHMRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCG   86 (161)
T ss_dssp             CCCCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHH
T ss_pred             hhhhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCc
Confidence            334445555531  222213688999999999999998754  2223344555557899999999999986  3334556


Q ss_pred             hHHHHHHHHHh
Q 042466           81 CLDELVKILEC   91 (178)
Q Consensus        81 c~~EL~~i~~~   91 (178)
                      +.-|+..+...
T Consensus        87 TafEiGyA~Al   97 (161)
T 2f62_A           87 TAFEVGCAAAL   97 (161)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            88899887654

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=86.77  E-value=4.2  Score=30.76  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=24.3

Q ss_pred             EEecccccCc--ccHHHHHHHHhhcCCcEEEec
Q 042466           14 FVSFRGEDTR--DNFTSHLYSALSRQNIQTFID   44 (178)
Q Consensus        14 FIS~~~~D~~--~~fv~~L~~aL~~~gi~vf~d   44 (178)
                      ||.+-|-|..  .+-+..|.+.|+++|+++..-
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            8888777742  467889999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	178
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	2e-20
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	6e-18

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 2e-20
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 9/144 (6%)

Query: 8   NKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDEISESLVNAIEASAI 66
           N ++  F+S+ G D+     + L   L ++ +Q  + ++    G  I E+++  IE S  
Sbjct: 10  NLQFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYK 68

Query: 67  SVIIFSESYPSSRWCLDELVKILECK-KEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKL 125
           S+ + S ++  S WC  EL         E +  LI +     P      +     S    
Sbjct: 69  SIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMAR 128

Query: 126 E------ERFKENSKKLQTWRKAL 143
                  +   +        R A+
Sbjct: 129 RTYLEWPKEKSKRGLFWANLRAAI 152

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 6e-18
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 5/111 (4%)

Query: 8   NKKYDVFVSFRGEDTRDNFTSHLYSAL--SRQNIQTFIDDQ-LNRGDEISESLVNAIEAS 64
           N  YD FVS+   D      + +   L       +  +  +    G  I ++++++IE S
Sbjct: 3   NICYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKS 61

Query: 65  AISVIIFSESYPSSRWCLDELVKIL-ECKKEYAQILIPVFYRVDPSDVRNQ 114
             +V + SE++  S WC  EL         E     I +           Q
Sbjct: 62  HKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.88
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.87
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	90.22
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	89.75

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6e-24  Score=161.33  Aligned_cols=102  Identities=25%  Similarity=0.470  Sum_probs=91.4

Q ss_pred             CCCCCcccEEEecccccCcccHH-HHHHHHhhcCCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhH
Q 042466            5 YRNNKKYDVFVSFRGEDTRDNFT-SHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCL   82 (178)
Q Consensus         5 ~~~~~~ydVFIS~~~~D~~~~fv-~~L~~aL~~~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~   82 (178)
                      ...+++|||||||+++|.  .|| ..|...|+++|+++|+|+ ++.+|+.+.++|.++|++|+.+|+|+|++|+.|.||.
T Consensus         7 ~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~   84 (161)
T d1fyva_           7 LQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCH   84 (161)
T ss_dssp             SSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHH
T ss_pred             cCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHH
Confidence            456789999999999994  677 569999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-hhccceeeeEEeecCc
Q 042466           83 DELVKILECK-KEYAQILIPVFYRVDP  108 (178)
Q Consensus        83 ~EL~~i~~~~-~~~~~~viPVfy~v~p  108 (178)
                      .|+..++.+. +.+..++|||+++..|
T Consensus        85 ~E~~~a~~~~~~~~~~~lIpV~l~~~~  111 (161)
T d1fyva_          85 YELYFAHHNLFHEGSNSLILILLEPIP  111 (161)
T ss_dssp             HHHHTTSCCCSCSSCSSEEEEESSCCC
T ss_pred             HHHHHHHHHHHHcCCCceeEEEEecCc
Confidence            9999998764 4556799999996433

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8e-24  Score=158.67  Aligned_cols=101  Identities=23%  Similarity=0.351  Sum_probs=88.7

Q ss_pred             CCCCcccEEEecccccCcccHH-HHHHHHhhc--CCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChhh
Q 042466            6 RNNKKYDVFVSFRGEDTRDNFT-SHLYSALSR--QNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRWC   81 (178)
Q Consensus         6 ~~~~~ydVFIS~~~~D~~~~fv-~~L~~aL~~--~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   81 (178)
                      ++.+.|||||||+++|.  .|| ..|...|++  .|+++|+|+ ++.+|+.+.++|.++|++|+.+|+|+||+|+.|.||
T Consensus         1 ~~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            46789999999999994  677 568999976  489999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-hhccceeeeEEeecCc
Q 042466           82 LDELVKILECK-KEYAQILIPVFYRVDP  108 (178)
Q Consensus        82 ~~EL~~i~~~~-~~~~~~viPVfy~v~p  108 (178)
                      ..|+..++... ++++.++|||+++..|
T Consensus        79 ~~E~~~a~~~~~~~~~~~iIpV~l~~~~  106 (149)
T d1fyxa_          79 KYELDFSHFRLFDENNDAAILILLEPIE  106 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEeccCc
Confidence            99998876543 5567899999996433

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.22  E-value=0.56  Score=30.03  Aligned_cols=59  Identities=17%  Similarity=0.206  Sum_probs=42.3

Q ss_pred             CcccEEEecccccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEe
Q 042466            9 KKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIF   71 (178)
Q Consensus         9 ~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~   71 (178)
                      ...+|||..-++.. ..++..|...|+++||++.+|.   .+..+...+..|-..---+++|+
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iii   60 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEI---MERGLSAQLKYASAIGADFAVIF   60 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECC---SCCCHHHHHHHHHHTTCSEEEEE
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEC---CCCcHHHHHHHHHhcCCCeEEec
Confidence            35789999888775 5789999999999999999976   24456666666644333344444

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.75  E-value=0.92  Score=31.82  Aligned_cols=72  Identities=11%  Similarity=0.086  Sum_probs=54.4

Q ss_pred             cCcccHHHHHHHHhhcCCcEEEecC--CCCCcccchHHHHHHHHhcceeeEEecCC--CCCChhhHHHHHHHHHhh
Q 042466           21 DTRDNFTSHLYSALSRQNIQTFIDD--QLNRGDEISESLVNAIEASAISVIIFSES--YPSSRWCLDELVKILECK   92 (178)
Q Consensus        21 D~~~~fv~~L~~aL~~~gi~vf~d~--~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~--y~~S~wc~~EL~~i~~~~   92 (178)
                      |....+...+...|++.|+.++.-.  .......|...-.+.|++|++.|.++++-  -..++=+.-|+..+....
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~alg   90 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN   90 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCC
Confidence            3335688999999999999999744  34444567777788999999999999752  234567888999987643