Citrus Sinensis ID: 042506

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKHEEFFRQIWKR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcHHcccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEEcccHHHHHccccHHHHHHHcHHHHHHHHcc
Coil and Loop (DISEMBL)
lergesispSLLKAIEDSRISIIVLSRnytsstwclDEVVYILECkhtndqpmVYLIFYDVEPTMLRKQTRHFQEALAKHEEFFRQIWKR
Flexible Loop (DISEMBL)
lergesispsllkaiedsRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKHEEFFRQIWKR
Low Complexity Region (SEG)
LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKHEEFFRQIWKR
Disordered region (IsUnstruct)
************KAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKHEEFFRQIW**
Disordered Region (DISOPRED)
*ERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKHEEF*******
Disordered Region (DISEMBL)
********PSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKHEEFFRQIWKR
Disordered Region (DISPRO)
****ESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKHEEFFR*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKHEEFFRQIWKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.988	0.068	0.446	6e-15
Q40392	1144	TMV resistance protein N	N/A	no	0.933	0.073	0.458	1e-14
O82500	1095	Putative disease resistan	no	no	0.8	0.065	0.424	5e-11
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.6	0.152	0.363	5e-05
Q9SYC9	571	Vesicle-associated protei	no	no	0.944	0.148	0.311	0.0004
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.8	0.175	0.324	0.0007

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 5/94 (5%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           +ER  SI P LL AI++SRI+I++ S+NY SSTWCL+E+V I +C +TN   MV  IF+ 
Sbjct: 47  IERSRSIGPELLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKC-YTNLNQMVIPIFFH 105

Query: 61  VEPTMLRKQT----RHFQEALAKHEEFFRQIWKR 90
           V+ + ++KQT    + F+E      E  +Q WK+
Sbjct: 106 VDASEVKKQTGEFGKVFEETCKAKSEDEKQSWKQ 139

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           LE G +I   L KAIE+S+ +I+V S NY +S WCL+E+V I+ECK T  +  V  IFYD
Sbjct: 49  LEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECK-TRFKQTVIPIFYD 107

Query: 61  VEPTMLRKQTRHFQEALAKHEEFFR 85
           V+P+ +R Q   F +A  +HE  ++
Sbjct: 108 VDPSHVRNQKESFAKAFEEHETKYK 132

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           ++R  +I   L  AI +S+IS+++ S NY SS+WCLDE++ I++CK       V  +FY 
Sbjct: 47  IKRSHTIGHELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLK-VMPVFYK 105

Query: 61  VEPTMLRKQTRHF 73
           V+P+ +RKQT  F
Sbjct: 106 VDPSDIRKQTGKF 118

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 10  SLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPT 64
           +L   I++SR+++++ S++YTSS WCLDE+  I +C +      +  IFY + P+
Sbjct: 58  NLFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAI-PIFYKLAPS 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 3   RGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVE 62
           RG +++  L + IE+SR+++ + S  YT S WCLDE+V + E +    + +V  +FY + 
Sbjct: 396 RGTNLN-YLFRRIEESRVAVAIFSERYTESCWCLDELVKMKE-QMEQGKLVVVPVFYRLN 453

Query: 63  PTMLRKQTRHFQEALAKHEEFFR------QIWK 89
            T  ++    F + L   E  +R      Q WK
Sbjct: 454 ATACKRFMGAFGDNLRNLEWEYRSEPERIQKWK 486

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 2   ERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDV 61
           ERG+ +  SL   I +S+I++++ S  Y  S WC+DE+V I E    N + ++  IFY +
Sbjct: 59  ERGKYLI-SLFDTIGESKIALVIFSEGYCESHWCMDELVKIKEYMDQN-RLIIIPIFYRL 116

Query: 62  EPTMLRKQTRHFQE 75
           +  +++  T  F +
Sbjct: 117 DLDVVKDLTGKFGD 130

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
315507085	965	putative TIR-NBS-LRR-AAA+ATPase [Cucumis	0.977	0.091	0.543	1e-20
356524112	265	PREDICTED: TMV resistance protein N-like	0.922	0.313	0.571	2e-20
298953299	1178	TIR-NBS-LRR-AAA+ATPase class resistance	0.977	0.074	0.543	2e-20
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.944	0.070	0.558	3e-20
307135796	1393	TIR-NBS-LRR disease resistance protein [	0.977	0.063	0.543	4e-20
307135797	556	TIR-NBS-LRR disease resistance protein [	0.977	0.158	0.543	6e-20
359493351	2816	PREDICTED: uncharacterized protein LOC10	0.944	0.030	0.558	7e-20
147780473	435	hypothetical protein VITISV_034310 [Viti	0.977	0.202	0.557	7e-20
224145716	532	tir-nbs-lrr resistance protein [Populus	0.944	0.159	0.569	9e-20
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.944	0.075	0.534	9e-20

>gi|315507085|gb|ADU33178.1| putative TIR-NBS-LRR-AAA+ATPase [Cucumis sativus]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 69/92 (75%), Gaps = 4/92 (4%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           LERGE IS SL K+I+++ ISI++ S+NY SS+WCLDE+V I+ECK +  Q  V+ +FY 
Sbjct: 53  LERGEQISESLFKSIQEASISIVIFSQNYASSSWCLDELVNIIECKKSKGQN-VFPVFYK 111

Query: 61  VEPTMLRKQTRHFQEALAKHEEFFR---QIWK 89
           V+P+ +RKQT  F EALAKH+  F+   QIW+
Sbjct: 112 VDPSDIRKQTGSFGEALAKHQPKFQTKTQIWR 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524112|ref|XP_003530676.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           LERG+ IS +LL+AIED+++S+IV S+N+ +S WCLDEV  I+ECK T  Q MV  +FYD
Sbjct: 50  LERGDEISGTLLRAIEDAKLSVIVFSKNFGTSKWCLDEVKKIMECKKTRRQ-MVVPVFYD 108

Query: 61  VEPTMLRKQTRHFQEALAKHEEFF 84
           +EPT +R QT  F  A A+HEE F
Sbjct: 109 IEPTHVRNQTGSFASAFARHEERF 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298953299|gb|ADI99934.1| TIR-NBS-LRR-AAA+ATPase class resistance protein [Cucumis sativus]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 69/92 (75%), Gaps = 4/92 (4%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           LERGE IS SL K+I+++ ISI++ S+NY SS+WCLDE+V I+ECK +  Q  V+ +FY 
Sbjct: 83  LERGEQISESLFKSIQEASISIVIFSQNYASSSWCLDELVNIIECKKSKGQN-VFPVFYK 141

Query: 61  VEPTMLRKQTRHFQEALAKHEEFFR---QIWK 89
           V+P+ +RKQT  F EALAKH+  F+   QIW+
Sbjct: 142 VDPSDIRKQTGSFGEALAKHQPKFQTKTQIWR 173

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 64/86 (74%), Gaps = 1/86 (1%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           LE+G+ I+P LLKAIE S  S+IVLS+NY SS+WCLDE+  I+EC     Q  ++ +FYD
Sbjct: 63  LEKGKVIAPELLKAIEQSMFSVIVLSKNYASSSWCLDELAKIIECGDQKGQ-KIFPVFYD 121

Query: 61  VEPTMLRKQTRHFQEALAKHEEFFRQ 86
           VEP+ +RKQT  FQ+  AKHEE +R+
Sbjct: 122 VEPSDVRKQTGSFQDDFAKHEEKYRE 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135796|gb|ADN33675.1| TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 71/92 (77%), Gaps = 4/92 (4%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           LERG+ IS +LLK+I+++ ISII+ S+NY SS+WCLDE+V I+ECK + DQ +V  +FY 
Sbjct: 53  LERGKQISETLLKSIQEALISIIIFSQNYASSSWCLDELVNIIECKKSKDQ-IVLPVFYK 111

Query: 61  VEPTMLRKQTRHFQEALAKHEEFFR---QIWK 89
           V+P+ +RKQ+  F EALAKH+  F+   QIW+
Sbjct: 112 VDPSDIRKQSGSFGEALAKHQAKFKTKIQIWR 143

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135797|gb|ADN33676.1| TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 69/92 (75%), Gaps = 4/92 (4%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           LERGE IS SL K+I+++ ISI++ S+NY SS+WCLDE+V I+ECK +  Q +V  IFY 
Sbjct: 50  LERGEQISESLFKSIQEALISIVIFSQNYASSSWCLDELVKIIECKKSKGQ-IVLPIFYK 108

Query: 61  VEPTMLRKQTRHFQEALAKHEEFFR---QIWK 89
           V+P+ +RKQ+  F EALAKH+  F+   QIW+
Sbjct: 109 VDPSDIRKQSGTFGEALAKHQAKFQTKTQIWR 140

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493351|ref|XP_002277841.2| PREDICTED: uncharacterized protein LOC100251634 [Vitis vinifera]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 67/86 (77%), Gaps = 1/86 (1%)

Query: 1    LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
            + RGESISP+L++AIE SR SII+LS+NY SSTWCL+E+V ILEC+ T  Q +V  +FY+
Sbjct: 1255 IRRGESISPTLVRAIEGSRSSIIILSQNYASSTWCLEELVKILECRKTMGQ-LVLPVFYN 1313

Query: 61   VEPTMLRKQTRHFQEALAKHEEFFRQ 86
            V+P+ +RK  + F +AL KHE+  +Q
Sbjct: 1314 VDPSDVRKHKQSFGKALVKHEKTLKQ 1339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780473|emb|CAN66817.1| hypothetical protein VITISV_034310 [Vitis vinifera]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 67/95 (70%), Gaps = 7/95 (7%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           L+RG+ ISP+L+ AIE+S  SIIVLS NY SS WCL+E+V ILECK +  Q  V  IFY+
Sbjct: 147 LDRGQVISPALVAAIENSMFSIIVLSENYASSRWCLEELVKILECKESRGQ-RVLPIFYN 205

Query: 61  VEPTMLRKQTRHFQEALAKHEEFFR------QIWK 89
           V+P+ +RK    F EALAKHEE F+      QIW+
Sbjct: 206 VDPSDVRKHMGKFGEALAKHEENFKENMGRVQIWR 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145716|ref|XP_002325741.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|224145719|ref|XP_002325742.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862616|gb|EEF00123.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862617|gb|EEF00124.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 1/86 (1%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           L RGE ISP L+KAIE SRISI+V S+ Y SS WCLDE+V I+EC+   DQ +V  IFYD
Sbjct: 47  LPRGEEISPQLVKAIEGSRISIVVFSKQYASSRWCLDELVKIVECRQKIDQ-VVLPIFYD 105

Query: 61  VEPTMLRKQTRHFQEALAKHEEFFRQ 86
            EP+ +RKQT  + +A  +HEE F++
Sbjct: 106 TEPSDVRKQTGSYAKAFDEHEEHFKE 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 62/86 (72%), Gaps = 1/86 (1%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           L RGE ISPSLLKAIEDS++S++V S NY SS WCL+E+  ILECK    Q MV  +FY 
Sbjct: 51  LNRGEEISPSLLKAIEDSKLSVVVFSDNYASSKWCLEELAKILECKKVKGQ-MVIPVFYR 109

Query: 61  VEPTMLRKQTRHFQEALAKHEEFFRQ 86
           V+P+ +R QT  F +A A+H++  ++
Sbjct: 110 VDPSHVRNQTGSFADAFARHDQLLKE 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:2160472	1038	AT5G41540 [Arabidopsis thalian	0.866	0.075	0.506	1.3e-16
TAIR|locus:2026649	966	AT1G63730 [Arabidopsis thalian	0.988	0.092	0.478	1.5e-16
TAIR|locus:2129670	1008	AT4G14370 [Arabidopsis thalian	0.988	0.088	0.457	2e-16
TAIR|locus:1009023443	213	AT5G38344 [Arabidopsis thalian	0.866	0.366	0.493	3.7e-16
TAIR|locus:2195478	1031	AT1G63870 [Arabidopsis thalian	0.988	0.086	0.489	5.6e-16
TAIR|locus:2130319	796	RLM3 "RESISTANCE TO LEPTOSPHAE	0.8	0.090	0.589	6.3e-16
TAIR|locus:2024588	997	RLM1 "RESISTANCE TO LEPTOSPHAE	0.966	0.087	0.5	6.9e-16
TAIR|locus:2026634	992	AT1G63740 [Arabidopsis thalian	0.988	0.089	0.457	1.4e-15
TAIR|locus:2195468	1017	AT1G63880 [Arabidopsis thalian	0.966	0.085	0.489	1.9e-15
TAIR|locus:2160487	1085	AT5G41550 [Arabidopsis thalian	0.988	0.082	0.446	2.1e-15

TAIR|locus:2160472 AT5G41540 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 40/79 (50%), Positives = 61/79 (77%)

Query:     1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
             +ERG+ I P L++AI +SR+S++VLS+NY SS+WCLDE+V IL+CK   +Q +V  IFY+
Sbjct:    47 IERGQRIGPELVQAIRESRVSLVVLSKNYPSSSWCLDELVEILKCKEDQEQ-IVMPIFYE 105

Query:    61 VEPTMLRKQTRHFQEALAK 79
             ++P+ +RKQ+  F +A  K
Sbjct:   106 IDPSDVRKQSGDFGKAFGK 124

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2026649 AT1G63730 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 45/94 (47%), Positives = 64/94 (68%)

Query:     1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
             +ERG++ISP L + I +SRISI+VLS+NY SS+WCLDE++ IL+CK    Q +V  +FY 
Sbjct:    49 IERGQTISPELTRGIRESRISIVVLSKNYASSSWCLDELLEILKCKEDIGQ-IVMTVFYG 107

Query:    61 VEPTMLRKQTRHF----QEALAKHEEFFRQIWKR 90
             V+P+ +RKQT  F     E  A+  E  +Q W +
Sbjct:   108 VDPSDVRKQTGEFGIRFSETWARKTEEEKQKWSQ 141

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2129670 AT4G14370 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 43/94 (45%), Positives = 68/94 (72%)

Query:     1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
             +ER ++I+P+L+KAI++SRISII+LS+NY SS+WCLDE++ I++CK    Q +V  +FY 
Sbjct:     7 IERSQTIAPALIKAIKESRISIILLSKNYASSSWCLDELLEIVKCKEAMGQ-IVMTVFYG 65

Query:    61 VEPTMLRKQT----RHFQEALAKHEEFFRQIWKR 90
             V+P+ +RKQT    R F E  ++  +  R+ W +
Sbjct:    66 VDPSDVRKQTGEFGRSFNETCSRSTKEKRRKWSQ 99

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=ISS

TAIR|locus:1009023443 AT5G38344 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 39/79 (49%), Positives = 57/79 (72%)

Query:     1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
             +ER +SI P L++AI  S+I+I++LSRNY SS+WCL+E+V I++C+    Q  V  IFYD
Sbjct:    96 IERSKSIGPELIEAIRGSKIAIVLLSRNYASSSWCLNELVEIMKCREQLGQT-VMTIFYD 154

Query:    61 VEPTMLRKQTRHFQEALAK 79
             V+PT ++KQT  F +   K
Sbjct:   155 VDPTDVKKQTGDFGKVFKK 173

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2195478 AT1G63870 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 5.6e-16, P = 5.6e-16
 Identities = 46/94 (48%), Positives = 60/94 (63%)

Query:     1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
             +ER E I PSL KAI++SRISI++LS+ Y  S WCLDE+V IL+CK      +V  IFY 
Sbjct:    53 IERSEEIVPSLKKAIKESRISIVILSKKYALSRWCLDELVEILKCKEVMGH-IVMTIFYG 111

Query:    61 VEPTMLRKQTR----HFQEALAKHEEFFRQIWKR 90
             VEP+ +RKQT     HF E  A   +  +Q W +
Sbjct:   112 VEPSDVRKQTGEFGFHFNETCAHRTDEDKQNWSK 145

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2130319 RLM3 "RESISTANCE TO LEPTOSPHAERIA MACULANS 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 6.3e-16, P = 6.3e-16
 Identities = 43/73 (58%), Positives = 53/73 (72%)

Query:     1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
             +ER   I+P LL AIE+SRIS++V S+NY SSTWCLDE+V I EC    DQ MV  IFY 
Sbjct:    45 IERSRKITPELLLAIENSRISLVVFSKNYASSTWCLDELVKIQECYEKLDQ-MVIPIFYK 103

Query:    61 VEPTMLRKQTRHF 73
             V+P+ +RKQT  F
Sbjct:   104 VDPSHVRKQTGEF 116

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:2000071 "regulation of defense response by callose deposition" evidence=IMP

GO:0015979 "photosynthesis" evidence=RCA

TAIR|locus:2024588 RLM1 "RESISTANCE TO LEPTOSPHAERIA MACULANS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 6.9e-16, P = 6.9e-16
 Identities = 46/92 (50%), Positives = 62/92 (67%)

Query:     3 RGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVE 62
             RGE+ISP+L +AI +SRISI++LS+NY SS WCLDE++ IL+CK    Q +V  +FY V+
Sbjct:    52 RGETISPALTQAIRESRISIVLLSKNYASSGWCLDELLEILKCKDDMGQ-IVMTVFYGVD 110

Query:    63 PTMLRKQTRHF----QEALAKHEEFFRQIWKR 90
             P+ +RKQT  F     E  A   E  RQ W +
Sbjct:   111 PSDVRKQTGEFGIAFNETCACRTEEERQKWSQ 142

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2026634 AT1G63740 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 43/94 (45%), Positives = 65/94 (69%)

Query:     1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
             +ERG++ISP L + I +SRISI+VLS+NY SS+WCLDE++ IL+CK    Q +V  +FY 
Sbjct:     7 IERGQTISPELTRGIRESRISIVVLSKNYASSSWCLDELLEILKCKEDIGQ-IVMTVFYG 65

Query:    61 VEPTMLRKQT----RHFQEALAKHEEFFRQIWKR 90
             V+P+ +RKQT    + F++  +   E  R+ W +
Sbjct:    66 VDPSDVRKQTGDILKVFKKTCSGKTEEKRRRWSQ 99

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2195468 AT1G63880 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 45/92 (48%), Positives = 61/92 (66%)

Query:     3 RGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVE 62
             R  +I PSL++AI++SRISI++LS+ Y SS+WCLDE+V ILECK    Q +V  IFY V+
Sbjct:    52 RSATIGPSLVEAIKESRISIVILSKKYASSSWCLDELVEILECKKAMGQ-IVMTIFYGVD 110

Query:    63 PTMLRKQTRHF----QEALAKHEEFFRQIWKR 90
             P+ +RKQ   F     E  A+  E  RQ W +
Sbjct:   111 PSDVRKQIGKFGIAFNETCARKTEEERQKWSK 142

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2160487 AT5G41550 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 42/94 (44%), Positives = 60/94 (63%)

Query:     1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
             +E+G +I P L+ AI +SR+SI++LS+ Y SS+WCLDE+V IL+CK    Q +V  IFYD
Sbjct:    49 IEKGNTIGPELVNAIRESRVSIVLLSKKYASSSWCLDELVEILKCKEDQGQ-IVMTIFYD 107

Query:    61 VEPTMLRKQTRHFQEALAK----HEEFFRQIWKR 90
             V+P+ +RKQ   F     K      E  +Q W +
Sbjct:   108 VDPSSVRKQKGDFGSTFMKTCEGKSEEVKQRWTK 141

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-22
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	2e-20
pfam01582	135	pfam01582, TIR, TIR domain	2e-20
pfam13676	102	pfam13676, TIR_2, TIR domain	8e-05
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	4e-04

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 87.2 bits (216), Expect = 8e-22
 Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 1/79 (1%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           +ER +S+ P L +AI DSRI+++V S+NY SS+WCL+E++ I+ CK    Q +V  +FY 
Sbjct: 49  IERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQ-LVIPVFYG 107

Query: 61  VEPTMLRKQTRHFQEALAK 79
           ++P+ +RKQT  F EA  K
Sbjct: 108 LDPSHVRKQTGDFGEAFEK 126

syringae 6; Provisional. Length = 1153

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 78.9 bits (195), Expect = 2e-20
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
            E G      + +AIE SRI+I+VLS NY  S WCLDE+V  LE         V  IFY+
Sbjct: 38  FEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYE 97

Query: 61  VEPTMLRKQTRHFQEALAKH-----EEFFRQIWKR 90
           V P+ +RKQ   F++   K+     E+   Q WK+
Sbjct: 98  VIPSDVRKQPGKFRKVFKKNYLKWPEDEKEQFWKK 132

Length = 140

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 78.5 bits (194), Expect = 2e-20
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILEC-KHTNDQPMVYLIFY 59
              GESI  +L +AIE SR +I++ S NY SS WCLDE+V I++C      + ++  IFY
Sbjct: 36  ELPGESILENLFEAIEKSRRAIVIFSSNYASSEWCLDELVEIVKCALEGGGKKVILPIFY 95

Query: 60  DVEPTMLRKQTRHFQEALAKHEE 82
            V+P+ +R Q+  F +A  K  +
Sbjct: 96  KVDPSDVRPQSGKFGKAFLKTLK 118

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 37.6 bits (88), Expect = 8e-05
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 4  GESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEP 63
          GE     + +A+  + + +++LS  Y +S WC  E    LE      + ++ +   D E 
Sbjct: 36 GEDWRDEIEEALRSADVVLVLLSPAYLASPWCRAEWGAALE----RGKRLIPVRLEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 14  AIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLR 67
           AI + ++ + V S  Y  S +CL E+  I+E K       V  IF DV+P+ LR
Sbjct: 77  AIRNCKVGVAVFSPRYCESYFCLHELALIMESKKR-----VIPIFCDVKPSQLR 125

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.96
PLN03194	187	putative disease resistance protein; Provisional	99.93
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.83
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.64
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	98.94
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	96.58
KOG3678	832	consensus SARM protein (with sterile alpha and arm	93.08

>PLN03210 Resistant to P

Probab=99.96  E-value=4.3e-30  Score=213.00  Aligned_cols=89  Identities=44%  Similarity=0.824  Sum_probs=83.9

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhhccchHHHHHHHH
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKH   80 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~q~g~~~~~f~~~   80 (90)
                      +++|+.|.+++++||++||++|||||+|||+|.|||+||++|++|+++.++ +|+||||+|+|++|++|+|.||++|.++
T Consensus        49 ~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~-~v~pvfy~v~p~~v~~~~g~f~~~f~~~  127 (1153)
T PLN03210         49 IERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQ-LVIPVFYGLDPSHVRKQTGDFGEAFEKT  127 (1153)
T ss_pred             ccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCc-eEEEEEecccHHHHhhccchHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHhH----hhhhcC
Q 042506           81 EEFF----RQIWKR   90 (90)
Q Consensus        81 ~~~~----~~~w~~   90 (90)
                      +++.    .++||.
T Consensus       128 ~~~~~~~~~~~w~~  141 (1153)
T PLN03210        128 CQNKTEDEKIQWKQ  141 (1153)
T ss_pred             hcccchhHHHHHHH
Confidence            7653    378973

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=99.93  E-value=4.5e-26  Score=158.22  Aligned_cols=67  Identities=31%  Similarity=0.576  Sum_probs=62.3

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhhc-cch
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQ-TRH   72 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~q-~g~   72 (90)
                      +++|+.|.+.|.+||++|+++|+|||+||++|.|||+||++|+++.    . .||||||+|+|++|++| .|.
T Consensus        64 l~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~----~-~ViPIFY~VdPsdVr~q~~~~  131 (187)
T PLN03194         64 MKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK----K-RVIPIFCDVKPSQLRVVDNGT  131 (187)
T ss_pred             ccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcC----C-EEEEEEecCCHHHhhccccCC
Confidence            4689999999999999999999999999999999999999999863    4 89999999999999997 554

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.83  E-value=4.4e-22  Score=131.16  Aligned_cols=83  Identities=39%  Similarity=0.573  Sum_probs=73.8

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCC-CCeEEEEEeecCcchhh-hccchHHHHHH
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTND-QPMVYLIFYDVEPTMLR-KQTRHFQEALA   78 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~-~~~vipIfy~v~ps~v~-~q~g~~~~~f~   78 (90)
                      +.||..+.+++.++|++||++|+|||+||++|.||++||..+++++.+.+ ..+|+|+||+++++++. .+++.|+..|.
T Consensus        38 ~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~  117 (141)
T PF01582_consen   38 FLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFL  117 (141)
T ss_dssp             TSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCT
T ss_pred             hcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhh
Confidence            46899999999999999999999999999999999999999999986644 23999999999999999 79999999987


Q ss_pred             HHHHh
Q 042506           79 KHEEF   83 (90)
Q Consensus        79 ~~~~~   83 (90)
                      .+...
T Consensus       118 ~~~~w  122 (141)
T PF01582_consen  118 TYLRW  122 (141)
T ss_dssp             HCEET
T ss_pred             hheeC
Confidence            76553

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.64  E-value=1.6e-15  Score=98.38  Aligned_cols=77  Identities=44%  Similarity=0.655  Sum_probs=68.3

Q ss_pred             CCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhcc-CCCCeEEEEEeecCcchhhhccchHHHHHHHH
Q 042506            3 RGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHT-NDQPMVYLIFYDVEPTMLRKQTRHFQEALAKH   80 (90)
Q Consensus         3 ~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~-~~~~~vipIfy~v~ps~v~~q~g~~~~~f~~~   80 (90)
                      +|.....+|.++|++|++.|+|+|++|..|.||..|+..+.++..+ ... .||||+|+..|+.+..+.+.++..+..+
T Consensus        40 ~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~-~iIPI~~~~~~~~~~~~~~~l~~~~~~~  117 (140)
T smart00255       40 PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGL-RVIPIFYEVIPSDVRKQPGKFRKVLKKN  117 (140)
T ss_pred             cccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCC-eEEEEEEecChHHHHhcccHHHHHHHHH
Confidence            4444455999999999999999999999999999999999998755 445 9999999988999999999999999876

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=98.94  E-value=1.4e-10  Score=71.99  Aligned_cols=54  Identities=30%  Similarity=0.426  Sum_probs=46.4

Q ss_pred             CCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEee
Q 042506            2 ERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD   60 (90)
Q Consensus         2 ~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~   60 (90)
                      .+|+.+.+.|.++|++|...|+++|++|..|.||..|+..+.+    .+. .|+||..+
T Consensus        34 ~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~----~~~-~iipv~~~   87 (102)
T PF13676_consen   34 PPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK----RGK-PIIPVRLD   87 (102)
T ss_dssp             -TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC----TSE-SEEEEECS
T ss_pred             CCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH----CCC-EEEEEEEC
Confidence            5799999999999999999999999999999999999998833    445 89999953

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=96.58  E-value=0.0052  Score=39.84  Aligned_cols=51  Identities=22%  Similarity=0.425  Sum_probs=35.6

Q ss_pred             CcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEee
Q 042506            5 ESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD   60 (90)
Q Consensus         5 ~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~   60 (90)
                      +.|...|-+.|..|..+||+.|++=..|.|+..|+..+++    .+. .||.|...
T Consensus        58 ~~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~----~~~-~Ii~V~~~  108 (130)
T PF08937_consen   58 EYIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALK----KGK-PIIGVYLP  108 (130)
T ss_dssp             TTHHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTT----T----EEEEETT
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHH----CCC-CEEEEECC
Confidence            3667788889999999999999999999999999998877    334 67777653

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=93.08  E-value=0.2  Score=40.41  Aligned_cols=58  Identities=28%  Similarity=0.393  Sum_probs=44.2

Q ss_pred             ccHHHHHHHHhcceEEEEecCCccc--------chhhHHHHHHHHHhhccCCCCeEEEEEee---------cCcchhhhc
Q 042506            7 ISPSLLKAIEDSRISIIVLSRNYTS--------STWCLDEVVYILECKHTNDQPMVYLIFYD---------VEPTMLRKQ   69 (90)
Q Consensus         7 i~~~i~~aI~~Sr~~IvV~S~ny~~--------S~wcl~EL~~i~~~~~~~~~~~vipIfy~---------v~ps~v~~q   69 (90)
                      +.+.+++.|+..+..|.|+|||-..        -.|-..||..+.+|.+     .|||||-.         +-|.|++--
T Consensus       654 FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe~~K-----NIiPI~D~aFE~Pt~ed~iPnDirmi  728 (832)
T KOG3678|consen  654 FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQK-----NIIPIFDTAFEFPTKEDQIPNDIRMI  728 (832)
T ss_pred             ccHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHHhcC-----CeeeeecccccCCCchhcCcHHHHHH
Confidence            3568999999999999999999432        3466678888888775     89999832         566666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		1e-12
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-11

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           LE G+  SP L   IE SR +++V+S NY +S+WCLDE+V I++ +       V  IFY 
Sbjct: 46  LENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKG-SITVMPIFYG 104
Query: 61  VEPTMLRKQTRHFQEALAKH 80
           VEP  +R QT    E   KH
Sbjct: 105 VEPNHVRWQTGVLAEQFKKH 124

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           L +G+ I P+LL+AI+ S+I + ++S  Y  S WCL E+  I+  +  + + ++  IFY 
Sbjct: 73  LLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYM 132
Query: 61  VEPTMLRKQTRHFQEALAKHEEFFR----QIWK 89
           V+P+ +R QT  +++A  KH   F     Q WK
Sbjct: 133 VDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWK 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	2e-43
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	9e-43
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	8e-39
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	6e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	8e-04

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  138 bits (350), Expect = 2e-43
 Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 4/94 (4%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           L +G+ I P+LL+AI+ S+I + ++S  Y  S WCL E+  I+  +  + + ++  IFY 
Sbjct: 73  LLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYM 132

Query: 61  VEPTMLRKQTRHFQEALAKHEEFFR----QIWKR 90
           V+P+ +R QT  +++A  KH   F     Q WK 
Sbjct: 133 VDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKD 166

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  136 bits (344), Expect = 9e-43
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           LE G+  SP L   IE SR +++V+S NY +S+WCLDE+V I++ +       V  IFY 
Sbjct: 46  LENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSI-TVMPIFYG 104

Query: 61  VEPTMLRKQTRHFQEALAKHEEFFR----QIWKR 90
           VEP  +R QT    E   KH           W++
Sbjct: 105 VEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQ 138

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  125 bits (316), Expect = 8e-39
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
           L  G+S+  S+ K +  SR  I+VLS ++    W   E+  + + + +     +  I++ 
Sbjct: 57  LRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRS-RILPIWHK 115

Query: 61  VEPTMLRKQTRHFQEALAKHEE 82
           V    +   +    + LA +  
Sbjct: 116 VSKDEVASFSPTMADKLAFNTS 137

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 46.2 bits (110), Expect = 6e-08
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 4   GESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEP 63
           G +I   L +A+  S   +++++  +    WC  +++  L      +   +  +   +  
Sbjct: 51  GGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTI-PLLSGLSR 109

Query: 64  TMLRKQTRHFQEA-LAKHEEFFRQIWK 89
                + R          +  FRQ+ +
Sbjct: 110 AAYPPELRFMYYVDGRGPDGGFRQVKE 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 4   GESISPSLLKAIEDSRISIIVLSRNYTSSTWC 35
           GE+   ++  AI +SR  + ++SR++    WC
Sbjct: 715 GENRIANIQDAIWNSRKIVCLVSRHFLRDGWC 746

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 35.3 bits (81), Expect = 8e-04
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 4   GESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFY-DVE 62
           G+SIS +++  IE S  SI VLS N+  + WC  E  +        +   + LI    + 
Sbjct: 77  GKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIP 136

Query: 63  PTMLRKQTRHFQEALAKH 80
              +  +    +  L K 
Sbjct: 137 FYCIPTRYHKLKALLEKK 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.9
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.74
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.68
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.68
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.66
2js7_A	160	Myeloid differentiation primary response protein M	99.63
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.43
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	93.81
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	91.44
1byr_A	155	Protein (endonuclease); phosphodiesterase,; 2.00A	80.56

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=4.2e-35  Score=201.15  Aligned_cols=88  Identities=41%  Similarity=0.695  Sum_probs=71.5

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhhccchHHHHHHHH
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAKH   80 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~q~g~~~~~f~~~   80 (90)
                      |++|+.|.++|.+||++||++|+|||+||++|.||++||++|++|.++.++ +||||||+|+|++|++|+|.||++|.+|
T Consensus        46 l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~-~ViPIfy~V~ps~Vr~q~g~fg~af~~~  124 (176)
T 3jrn_A           46 LENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSI-TVMPIFYGVEPNHVRWQTGVLAEQFKKH  124 (176)
T ss_dssp             -------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSC-EEEEEECSSCHHHHHHTCTHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCC-EEEEEEecCCHHHhhhccCcHHHHHHHH
Confidence            579999999999999999999999999999999999999999999988888 9999999999999999999999999999


Q ss_pred             HHhH----hhhhc
Q 042506           81 EEFF----RQIWK   89 (90)
Q Consensus        81 ~~~~----~~~w~   89 (90)
                      +++.    .++||
T Consensus       125 ~~~~~~~~~~~Wr  137 (176)
T 3jrn_A          125 ASREDPEKVLKWR  137 (176)
T ss_dssp             HTTSCHHHHHHHH
T ss_pred             HhccCHHHHHHHH
Confidence            8863    37897

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=7.9e-35  Score=203.66  Aligned_cols=88  Identities=38%  Similarity=0.719  Sum_probs=82.8

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhcc-CCCCeEEEEEeecCcchhhhccchHHHHHHH
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHT-NDQPMVYLIFYDVEPTMLRKQTRHFQEALAK   79 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~-~~~~~vipIfy~v~ps~v~~q~g~~~~~f~~   79 (90)
                      |++|+.|.++|.+||++||++|+|||+||++|.||++||++|++|.++ .++ +||||||+|+|++||+|+|.||++|.+
T Consensus        73 l~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~-~ViPIFY~VdPs~Vr~q~g~fg~af~~  151 (204)
T 3ozi_A           73 LLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRR-IILPIFYMVDPSDVRHQTGCYKKAFRK  151 (204)
T ss_dssp             TCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTS-EECCEEESSCHHHHHHTCTTHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCe-eeEEEEeecCHHHHHhccccHHHHHHH
Confidence            579999999999999999999999999999999999999999999875 577 999999999999999999999999999


Q ss_pred             HHHhH----hhhhc
Q 042506           80 HEEFF----RQIWK   89 (90)
Q Consensus        80 ~~~~~----~~~w~   89 (90)
                      |++++    .++||
T Consensus       152 ~~~~~~~~~v~~Wr  165 (204)
T 3ozi_A          152 HANKFDGQTIQNWK  165 (204)
T ss_dssp             HTTTSCHHHHHHHH
T ss_pred             HHHhhCHHHHHHHH
Confidence            99875    37897

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.90  E-value=3e-25  Score=147.77  Aligned_cols=78  Identities=22%  Similarity=0.348  Sum_probs=73.2

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhhccchHHHHHHH
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRKQTRHFQEALAK   79 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~q~g~~~~~f~~   79 (90)
                      |.+|+.+.++|.++|++|+++|+|+|+||++|.||++||..++++..+++. +||||||+|+|++|++|+|.|+++|..
T Consensus        57 l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~-~iiPV~~~v~p~~v~~~~~~~~~~~~~  134 (154)
T 3h16_A           57 LRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRS-RILPIWHKVSKDEVASFSPTMADKLAF  134 (154)
T ss_dssp             ECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCC-CEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred             CCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCC-EEEEEEecCCHHHHhhCCccHHHHHhh
Confidence            468999999999999999999999999999999999999999998877777 999999999999999999999987744

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.74  E-value=1.3e-19  Score=120.31  Aligned_cols=67  Identities=12%  Similarity=0.288  Sum_probs=55.2

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEeecCcchhhh
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYDVEPTMLRK   68 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~v~ps~v~~   68 (90)
                      +.||+.+.++|.+||++||++|+|||+||++|.||+.||..++++...... +||||||+|+++++..
T Consensus        48 ~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~-~vIpv~~~v~~~~lp~  114 (146)
T 3ub2_A           48 ATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEG-CTIPLLSGLSRAAYPP  114 (146)
T ss_dssp             -----CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSS-EEEEEECSCCGGGSCG
T ss_pred             ccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCC-cEEEEEcCCChhhCCH
Confidence            469999999999999999999999999999999999999999998754445 7789999998666543

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.68  E-value=1.3e-17  Score=113.84  Aligned_cols=65  Identities=31%  Similarity=0.520  Sum_probs=53.5

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhh-ccCCCCeEEEEEee-cCcchh
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECK-HTNDQPMVYLIFYD-VEPTML   66 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~-~~~~~~~vipIfy~-v~ps~v   66 (90)
                      +.||+.|.++|.+||++||++|+|||+||++|.||+.||..++++. .++++ .||||||+ +++..+
T Consensus        74 ~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~-~vIpV~~~~i~~~~l  140 (178)
T 2j67_A           74 FDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSD-HIILILLEPIPFYCI  140 (178)
T ss_dssp             CCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC--------CEEEEESSCCCGGGS
T ss_pred             CCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCC-EEEEEEecCCChHHC
Confidence            4799999999999999999999999999999999999999999754 55566 89999995 555444

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.68  E-value=4.8e-18  Score=112.69  Aligned_cols=66  Identities=24%  Similarity=0.401  Sum_probs=57.3

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHh-hccCCCCeEEEEEee-cCcchhh
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILEC-KHTNDQPMVYLIFYD-VEPTMLR   67 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~-~~~~~~~~vipIfy~-v~ps~v~   67 (90)
                      +.||+.+.++|.++|++||++|+|||+||++|.||+.||..++++ ..+++. .||||||+ +++..+.
T Consensus        44 ~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~-~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           44 FIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENND-AAILILLEPIEKKAIP  111 (149)
T ss_dssp             CCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTT-CCEEEESSCCCTTTSC
T ss_pred             CCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCC-EEEEEEecCCChhhcC
Confidence            469999999999999999999999999999999999999999864 455666 89999994 6665443

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.66  E-value=6.8e-17  Score=108.37  Aligned_cols=62  Identities=23%  Similarity=0.259  Sum_probs=55.6

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcc-cchhhHHHHHHHHHhh-ccCCCCeEEEEEeecCc
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYT-SSTWCLDEVVYILECK-HTNDQPMVYLIFYDVEP   63 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~-~S~wcl~EL~~i~~~~-~~~~~~~vipIfy~v~p   63 (90)
                      +.||+.|.++|.++|++||++|+|||+||+ .|.||+.|+..++++. .+++. .||||+|+-.+
T Consensus        51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~-~vI~I~~~~~~  114 (159)
T 1t3g_A           51 LIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEI-KVILIECSELR  114 (159)
T ss_dssp             CCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSS-EEEEEECSCCC
T ss_pred             ccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCC-EEEEEEecccc
Confidence            469999999999999999999999999997 9999999999999986 55666 99999987444

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.63  E-value=2.1e-17  Score=110.97  Aligned_cols=61  Identities=20%  Similarity=0.250  Sum_probs=54.4

Q ss_pred             CCCCCcccHHHHHHHH-hcceEEEEecCCcccchhhHHHHHHHHHhh-ccCCCCeEEEEEeecC
Q 042506            1 LERGESISPSLLKAIE-DSRISIIVLSRNYTSSTWCLDEVVYILECK-HTNDQPMVYLIFYDVE   62 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~-~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~-~~~~~~~vipIfy~v~   62 (90)
                      +.||+.+.++|.++|+ .||++|+|||+||++|.||+.|+..++++. .+++. +||||||+.-
T Consensus        54 ~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~-~vIpV~~~~~  116 (160)
T 2js7_A           54 VLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQK-RLIPIKYKAM  116 (160)
T ss_dssp             SSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHH-TEEEEESSCC
T ss_pred             CCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCC-EEEEEEEccc
Confidence            4699999999999999 799999999999999999999999999875 44455 8999999754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.43  E-value=6.4e-14  Score=111.28  Aligned_cols=62  Identities=19%  Similarity=0.352  Sum_probs=55.5

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhh-ccCCCCeEEEEEeecCc
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECK-HTNDQPMVYLIFYDVEP   63 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~-~~~~~~~vipIfy~v~p   63 (90)
                      +.||+.|.++|.+||++||++|+|+|++|+.|+||.+|+..++++. +++++ +||||||+-.|
T Consensus       712 ~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~-~~i~i~~~~~~  774 (844)
T 3j0a_A          712 FVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNS-ALIMVVVGSLS  774 (844)
T ss_dssp             CCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCT-TEEEEESSCCC
T ss_pred             cCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCC-cEEEEEeccCC
Confidence            4699999999999999999999999999999999999999999875 55666 99999996443

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=93.81  E-value=0.13  Score=35.16  Aligned_cols=51  Identities=25%  Similarity=0.337  Sum_probs=42.3

Q ss_pred             cccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEee
Q 042506            6 SISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD   60 (90)
Q Consensus         6 ~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~   60 (90)
                      .|-..|-+.|..|...|+++|++...|.|-..|+..+.+   +.+. .||-|..+
T Consensus        68 tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~~~-PII~Vy~~  118 (189)
T 3hyn_A           68 TLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TKGL-PVIVIYPD  118 (189)
T ss_dssp             THHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TTCC-CEEEEETT
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hcCC-cEEEEECC
Confidence            456788889999999999999999999999999988872   2345 78888754

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=91.44  E-value=0.13  Score=32.18  Aligned_cols=41  Identities=15%  Similarity=0.037  Sum_probs=31.6

Q ss_pred             HHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEE
Q 042506           13 KAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIF   58 (90)
Q Consensus        13 ~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIf   58 (90)
                      ..|+.|...|+..+++-.+|+||..|+..+.+    .+. .|+-|.
T Consensus        34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~----~gk-pIigV~   74 (111)
T 1eiw_A           34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARK----SSK-PIITVR   74 (111)
T ss_dssp             CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT----TTC-CEEEEC
T ss_pred             CccccCCEEEEEeCCCcCCChHHHHHHHHHHH----cCC-CEEEEE
Confidence            34678888899999988999999999987754    344 566664

>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A

Probab=80.56  E-value=4.9  Score=24.71  Aligned_cols=52  Identities=19%  Similarity=0.248  Sum_probs=34.8

Q ss_pred             CCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEee
Q 042506            2 ERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD   60 (90)
Q Consensus         2 ~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~   60 (90)
                      .||+.+.+.+.++|+.++..|.+.++.|. +    .++..++....+.|-  -+-|+++
T Consensus        10 ~p~~~~~~~~~~~i~~A~~~I~i~~~~~~-~----~~i~~aL~~a~~rGV--~Vril~~   61 (155)
T 1byr_A           10 SPEGSARVLVLSAIDSAKTSIRMMAYSFT-A----PDIMKALVAAKKRGV--DVKIVID   61 (155)
T ss_dssp             ETTTHHHHHHHHHHHHCSSEEEEEESSBC-C----HHHHHHHHHHHHTTC--EEEEEEE
T ss_pred             CCCCcHHHHHHHHHHHHhhEEEEEEEEeC-C----HHHHHHHHHHHHCCC--EEEEEEe
Confidence            37788888999999999999999998773 3    345444443333333  3344444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	7e-07
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	3e-06

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 7e-07
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYIL-ECKHTNDQPMVYLIFY 59
              G+ I  +++ +IE S  ++ VLS N+  S WC  E+ +        N+   + ++  
Sbjct: 44  FIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLE 103

Query: 60  DVEPTMLRKQTRHFQEALAKH 80
            +E   + ++    ++ +   
Sbjct: 104 PIEKKAIPQRFCKLRKIMNTK 124

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 3e-06
 Identities = 21/85 (24%), Positives = 34/85 (40%)

Query: 1   LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD 60
              G+SI  +++  IE S  SI VLS N+  S WC  E+ +            + LI  +
Sbjct: 49  FVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLE 108

Query: 61  VEPTMLRKQTRHFQEALAKHEEFFR 85
             P      + H  ++L     +  
Sbjct: 109 PIPQYSIPSSYHKLKSLMARRTYLE 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.45
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.45

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.1e-15  Score=94.85  Aligned_cols=65  Identities=26%  Similarity=0.477  Sum_probs=55.4

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhh-ccCCCCeEEEEEee-cCcchh
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECK-HTNDQPMVYLIFYD-VEPTML   66 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~-~~~~~~~vipIfy~-v~ps~v   66 (90)
                      +.||+.+.++|.++|+.|++.|+|+|++|..|.||..|+..++... ++++. .+|||+++ ++...+
T Consensus        44 ~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~~E~~~a~~~~~~~~~~-~iIpV~l~~~~~~~~  110 (149)
T d1fyxa_          44 FIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENND-AAILILLEPIEKKAI  110 (149)
T ss_dssp             CCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTT-CCEEEESSCCCTTTS
T ss_pred             ccccchHHHHHHHHHHhCCEEEEEEcCccccccchHHHHHHHHHHHHHcCCc-eEEEEEeccCchhhc
Confidence            4689999999999999999999999999999999999999887664 44555 99999996 443333

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.3e-14  Score=94.05  Aligned_cols=60  Identities=30%  Similarity=0.494  Sum_probs=53.8

Q ss_pred             CCCCCcccHHHHHHHHhcceEEEEecCCcccchhhHHHHHHHHHhhccCCCCeEEEEEee
Q 042506            1 LERGESISPSLLKAIEDSRISIIVLSRNYTSSTWCLDEVVYILECKHTNDQPMVYLIFYD   60 (90)
Q Consensus         1 l~~G~~i~~~i~~aI~~Sr~~IvV~S~ny~~S~wcl~EL~~i~~~~~~~~~~~vipIfy~   60 (90)
                      +.||+.+.++|.++|+.|+++|+|+|++|..|.||..|+..+++++.+.+...+|||+++
T Consensus        49 ~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~~~a~~~~~~~~~~~lIpV~l~  108 (161)
T d1fyva_          49 FVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLE  108 (161)
T ss_dssp             CCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHHHHTTSCCCSCSSCSSEEEEESS
T ss_pred             cccccccHHHHHHHHHhCCEEEEEecCccccChHHHHHHHHHHHHHHHcCCCceeEEEEe
Confidence            479999999999999999999999999999999999999999987644443399999996