Citrus Sinensis ID: 042512

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
MCQLPSSHSSKCNFNQESNMLSPLTSKNPTTNQENNPNESTHLFLAIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQAQRAKELTGNATIDDETEAHNKHSSTYCSLV
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHccccccccccc
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHcHHHccccHHHHHHEEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccc
mcqlpsshsskcnfnqesnmlspltsknpttnqennpnesTHLFLAIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLpdlialsflHPLRIYLRtqsitlpltfCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGvhektwggiSLECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLllnpqatvaSMGILIQTTSLIyifpsslsfgvstrvgnelgancpKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLpiiglcelgncpqttgcgvlrgtarpklganinlgcfylvGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQAQRAKEltgnatiddeteahnkhsstycslv
mcqlpsshsskcnfnqESNMLSPLTSKNPTTNQENNPNESTHLFLAIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQAQRAKELTgnatiddeteahnkhsstycslv
MCQLPSSHSSKCNFNQESNMLSPLTSKnpttnqennpneSTHLFLAIKEARRIANIALPMILTGLLLYSRSMISMlflgrlgdlalaggslaigfgNITGYSLLSGLAMGMETICGQAFGAARYKllgltlqrtilllllSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQAQRAKELTGNATIDDETEAHNKHSSTYCSLV
*****************************************HLFLAIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQAQ*****************************
*****************************************HLFLAIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQAQRA***************************
***********CNFNQESNMLSPLTSKNPTTNQENNPNESTHLFLAIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQAQRAKELTGNATIDDET**************
**************************************ESTHLFLAIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQAQRAKELTGNAT*******************
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MCQLPSSHSSKCNFNQESNMLSPLTSKNPTTNQENNPNESTHLFLAIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQAQRAKELTGNATIDDETEAHNKHSSTYCSLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query513 2.2.26 [Sep-21-2011]
Q5I0E9566 Multidrug and toxin extru yes no 0.881 0.798 0.346 1e-65
Q8K0H1567 Multidrug and toxin extru yes no 0.853 0.772 0.343 2e-64
Q3V050573 Multidrug and toxin extru no no 0.859 0.769 0.343 1e-63
Q9LUH3469 MATE efflux family protei no no 0.851 0.931 0.334 3e-63
Q5RFD2570 Multidrug and toxin extru yes no 0.877 0.789 0.333 7e-63
Q5R7E4581 Multidrug and toxin extru no no 0.873 0.771 0.339 1e-61
A4IIS8574 Multidrug and toxin extru yes no 0.861 0.770 0.334 2e-61
Q9SIA3476 MATE efflux family protei no no 0.840 0.905 0.325 1e-60
Q8GXM8476 MATE efflux family protei no no 0.840 0.905 0.322 1e-60
Q9SIA5476 MATE efflux family protei no no 0.840 0.905 0.325 1e-60
>sp|Q5I0E9|S47A1_RAT Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1 Back     alignment and function desciption
 Score =  251 bits (640), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 161/465 (34%), Positives = 248/465 (53%), Gaps = 13/465 (2%)

Query: 48  KEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGL 107
           +E R +  +A P  L  L+++  S IS +F G LG L L   +LAI   N+TG S+  GL
Sbjct: 32  EELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGL 91

Query: 108 AMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAH 167
           +   +T+  Q +G+   K +G+ LQR  L+LLL   P   L++N + ILL   Q+ D++ 
Sbjct: 92  SSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSR 151

Query: 168 EAQIYLLYSLPDLIALSFLHPLRI-YLRTQSITLPLTFCATFAIILHIPINYLLVSVLNL 226
             Q Y++  +P L A +FL+ L++ YL  Q I LP       A +++   NYL +  L+L
Sbjct: 152 LTQTYVMVFIPALPA-AFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHL 210

Query: 227 GLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVC 286
           G+ G AL++  + F L I L LYI+   +H  TWGG S EC ++W S L LAIPS + +C
Sbjct: 211 GVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWSWECLQDWASFLQLAIPSMLMLC 270

Query: 287 LEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCP 346
           +EWW YE+   L G+L      + +  I  +   ++Y+ P+  S   + RVGN LGA   
Sbjct: 271 IEWWAYEVGSFLSGIL--GMVELGAQSITYELAIIVYMIPAGFSVAANVRVGNALGAGNI 328

Query: 347 KKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGN 406
            +AK ++ I L+ + +   T  V     +++   +FT D +I+AL + V+PI  +  L  
Sbjct: 329 DQAKKSSAISLIVTELFAVTFCVLLLGCKDLVGYIFTTDWDIVALVAQVVPIYAVSHLFE 388

Query: 407 CPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLL---AAQ 463
               T  GVLRGT   K+GA +N   +Y++G+P+ + L F +     GLW G++     Q
Sbjct: 389 ALACTCGGVLRGTGNQKVGAIVNAIGYYVIGLPIGISLMFVAKLGVIGLWSGIIICSVCQ 448

Query: 464 GSCVVTMLFVVARTDWDL---QAQRAKELTGNATIDDETEAHNKH 505
            SC    L  +AR +W L   QAQ    L  N  ++        H
Sbjct: 449 TSC---FLVFIARLNWKLACQQAQVHANLKVNVALNSAVSQEPAH 490
Solute transporter for tetraethylammonium (TEA), cimetidine, metformin, guanidine, N-methylnicotinamide (NMN) and also the zwitterionic cephalosporin cephalexin. Not a transporter for 1-methyl-4-phenylpyridinium (MPP), procainamide, creatinine, guanidine, p-aminohippurate (PAH) and the anionic cephalosporin cefalozin. MPP-transport activity has been observed in PubMed:16928787 and PubMed:17047166 and may contradict results observed in PubMed:16850272. Seems to also play a role in the uptake of oxaliplatin (a new platinum anticancer agent). Responsible for the secretion of cationic drugs across the brush border membranes.
Rattus norvegicus (taxid: 10116)
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description
>sp|Q3V050|S47A2_MOUSE Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R7E4|S47A2_PONAB Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1 Back     alignment and function description
>sp|A4IIS8|S47A1_XENTR Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query513
225455459534 PREDICTED: multidrug and toxin extrusion 0.970 0.932 0.774 0.0
255537279539 multidrug resistance pump, putative [Ric 0.959 0.912 0.789 0.0
224071706443 predicted protein [Populus trichocarpa] 0.863 1.0 0.857 0.0
255539553553 multidrug resistance pump, putative [Ric 0.982 0.911 0.745 0.0
224136866525 predicted protein [Populus trichocarpa] 0.943 0.921 0.762 0.0
225426773530 PREDICTED: multidrug and toxin extrusion 0.994 0.962 0.756 0.0
357481725539 Multidrug and toxin extrusion protein [M 0.927 0.883 0.768 0.0
224120154460 predicted protein [Populus trichocarpa] 0.888 0.991 0.804 0.0
356540464534 PREDICTED: MATE efflux family protein 6- 0.996 0.956 0.703 0.0
356534161530 PREDICTED: MATE efflux family protein 9- 0.970 0.939 0.725 0.0
>gi|225455459|ref|XP_002274808.1| PREDICTED: multidrug and toxin extrusion protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/510 (77%), Positives = 440/510 (86%), Gaps = 12/510 (2%)

Query: 1   MCQLPSSH-SSKCNFNQ---------ESNMLSPLTSKNPTTNQENNPNESTHLFLAIKEA 50
           MCQ PSS  S KCN N          E +M +PL  K+PT+NQ+      THL LAI+EA
Sbjct: 1   MCQPPSSPLSPKCNSNHGYPQKMKEPEPHMGTPLIPKSPTSNQQQY--TQTHLSLAIREA 58

Query: 51  RRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMG 110
             IA IALPMILTGLLLYSRSMISMLFLGRLG+LALAGGSLA+GF NITGYS+LSGLAMG
Sbjct: 59  NSIAKIALPMILTGLLLYSRSMISMLFLGRLGELALAGGSLAVGFANITGYSILSGLAMG 118

Query: 111 METICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQ 170
           ME ICGQAFGA R+ LLGL+LQRT+LLLL +S+PIAFLWLNMK ILLFCGQ++DIA EAQ
Sbjct: 119 MEPICGQAFGAKRHALLGLSLQRTVLLLLFTSLPIAFLWLNMKRILLFCGQDEDIAAEAQ 178

Query: 171 IYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLGLKG 230
            YLLYSLPDL A S LHPLRIYLRTQSITLPLTFCAT +I +HIPINYLLVS LNLG+KG
Sbjct: 179 SYLLYSLPDLFAQSLLHPLRIYLRTQSITLPLTFCATMSIFMHIPINYLLVSHLNLGIKG 238

Query: 231 IALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLEWW 290
           +ALS VWTNFNLV SLI+Y++ISGV++KTWGG+S+EC + W+ LLNLA+PSCISVCLEWW
Sbjct: 239 VALSGVWTNFNLVGSLIIYLLISGVYKKTWGGLSMECLRGWKPLLNLAVPSCISVCLEWW 298

Query: 291 WYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAK 350
           WYEIMILLCGLLLNP+ATVASMGILIQTTSLIYIFPSSLSF VSTRVGNELGAN P KAK
Sbjct: 299 WYEIMILLCGLLLNPRATVASMGILIQTTSLIYIFPSSLSFSVSTRVGNELGANQPNKAK 358

Query: 351 LAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQT 410
            AAIIGL  SF LGF+AL+F  +VRN+WASMFTQDAEIIALTSMVLPIIGLCELGNCPQT
Sbjct: 359 CAAIIGLACSFTLGFSALLFAVMVRNVWASMFTQDAEIIALTSMVLPIIGLCELGNCPQT 418

Query: 411 TGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVVTM 470
           TGCGVLRGTARP++GANINLGCFYLVG PVAV L FY+GFDFEGLW GLLAAQ SCVVTM
Sbjct: 419 TGCGVLRGTARPRVGANINLGCFYLVGTPVAVGLGFYAGFDFEGLWLGLLAAQASCVVTM 478

Query: 471 LFVVARTDWDLQAQRAKELTGNATIDDETE 500
           L V+ RTDW+++AQRAK+LT    + DE +
Sbjct: 479 LVVLNRTDWEVEAQRAKQLTSGPLVPDEED 508

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537279|ref|XP_002509706.1| multidrug resistance pump, putative [Ricinus communis] gi|223549605|gb|EEF51093.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224071706|ref|XP_002303561.1| predicted protein [Populus trichocarpa] gi|222840993|gb|EEE78540.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255539553|ref|XP_002510841.1| multidrug resistance pump, putative [Ricinus communis] gi|223549956|gb|EEF51443.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224136866|ref|XP_002322435.1| predicted protein [Populus trichocarpa] gi|222869431|gb|EEF06562.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225426773|ref|XP_002276226.1| PREDICTED: multidrug and toxin extrusion protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357481725|ref|XP_003611148.1| Multidrug and toxin extrusion protein [Medicago truncatula] gi|355512483|gb|AES94106.1| Multidrug and toxin extrusion protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224120154|ref|XP_002318258.1| predicted protein [Populus trichocarpa] gi|222858931|gb|EEE96478.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356540464|ref|XP_003538709.1| PREDICTED: MATE efflux family protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356534161|ref|XP_003535626.1| PREDICTED: MATE efflux family protein 9-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query513
TAIR|locus:2127193502 AT4G23030 "AT4G23030" [Arabido 0.900 0.920 0.660 4.3e-164
TAIR|locus:2016615532 ZF14 "AT1G58340" [Arabidopsis 0.871 0.840 0.558 8.5e-136
TAIR|locus:2173098505 AT5G52050 [Arabidopsis thalian 0.879 0.893 0.575 4.2e-134
TAIR|locus:2119941532 ADS1 "AT4G29140" [Arabidopsis 0.883 0.851 0.516 1.8e-126
TAIR|locus:2183169508 AT5G19700 "AT5G19700" [Arabido 0.873 0.881 0.526 1.1e-124
TAIR|locus:2064138486 AT2G38510 "AT2G38510" [Arabido 0.894 0.944 0.456 3.4e-109
TAIR|locus:2013006510 AT1G71870 "AT1G71870" [Arabido 0.423 0.425 0.555 1.1e-103
TAIR|locus:2155179502 AT5G49130 "AT5G49130" [Arabido 0.883 0.902 0.417 1.2e-95
TAIR|locus:2132619491 AT4G22790 "AT4G22790" [Arabido 0.869 0.908 0.377 3.2e-72
TAIR|locus:2156737486 AT5G52450 "AT5G52450" [Arabido 0.863 0.911 0.314 1.8e-62
TAIR|locus:2127193 AT4G23030 "AT4G23030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
 Identities = 306/463 (66%), Positives = 365/463 (78%)

Query:    41 THLFLAIKEARRIANIALPMILTGLLLYSRSMISMXXXXXXXXXXXXXXXXXXXX-XNIT 99
             THL  +I+EA+ IA I+LP+ILTGLLLYSRSMISM                      NIT
Sbjct:    24 THLSSSIQEAKSIAKISLPLILTGLLLYSRSMISMLFLGRLNDLSALSGGSLALGFANIT 83

Query:   100 GYSLLSGLAMGMETICGQAFGAARYKXXXXXXXXXXXXXXXSSIPIAFLWLNMKTILLFC 159
             GYSLLSGL++GME IC QAFGA R+K                S+PI+ LWLN+K ILLF 
Sbjct:    84 GYSLLSGLSIGMEPICVQAFGAKRFKLLGLALQRTTLLLLLCSLPISILWLNIKKILLFF 143

Query:   160 GQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYL 219
             GQ+++I+++A+I++L+SLPDLI  SFLHP+RIYLR+QSITLPLT+ A FA++LHIPINYL
Sbjct:   144 GQDEEISNQAEIFILFSLPDLILQSFLHPIRIYLRSQSITLPLTYSAFFAVLLHIPINYL 203

Query:   220 LVSVLNLGLKGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAI 279
             LVS L LGLKG+AL ++WTN NL+  LI+YI+ SGV++KTWGG S++CFK WRSL+ LAI
Sbjct:   204 LVSSLGLGLKGVALGAIWTNVNLLGFLIIYIVFSGVYQKTWGGFSMDCFKGWRSLMKLAI 263

Query:   280 PSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGN 339
             PSC+SVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTT+LIYIFPSSLS  VSTRVGN
Sbjct:   264 PSCVSVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTALIYIFPSSLSISVSTRVGN 323

Query:   340 ELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPII 399
             ELGAN P KA++AA  GL  S  LG  A+ F  +VRN WA +FT + EI+ LTSMVLPII
Sbjct:   324 ELGANQPDKARIAARTGLSLSLGLGLLAMFFALMVRNCWARLFTDEEEIVKLTSMVLPII 383

Query:   400 GLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGL 459
             GLCELGNCPQTT CGVLRG+ARPKLGANINL CFY VGMPVAVWLSF+SGFDF+GLW GL
Sbjct:   384 GLCELGNCPQTTLCGVLRGSARPKLGANINLCCFYFVGMPVAVWLSFFSGFDFKGLWLGL 443

Query:   460 LAAQGSCVVTMLFVVARTDWDLQAQRAKELTGNATIDDETEAH 502
              AAQGSC+++ML V+ARTDW+++  RAKEL   +   DE + +
Sbjct:   444 FAAQGSCLISMLVVLARTDWEVEVHRAKELMTRSCDGDEDDGN 486
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2016615 ZF14 "AT1G58340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173098 AT5G52050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119941 ADS1 "AT4G29140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183169 AT5G19700 "AT5G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064138 AT2G38510 "AT2G38510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013006 AT1G71870 "AT1G71870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155179 AT5G49130 "AT5G49130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132619 AT4G22790 "AT4G22790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9USK3YJ2D_SCHPONo assigned EC number0.30510.85570.8144yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 0.0
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 4e-59
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 5e-55
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 5e-51
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 1e-36
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 4e-36
pfam01554161 pfam01554, MatE, MatE 6e-32
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-29
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 8e-29
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 6e-28
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 8e-28
pfam01554161 pfam01554, MatE, MatE 5e-27
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 3e-22
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 9e-19
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 4e-18
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 7e-18
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 2e-11
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 6e-11
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 2e-10
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 2e-10
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 2e-09
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 3e-08
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 3e-08
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 4e-08
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 9e-06
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 9e-06
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-05
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 5e-04
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 8e-04
cd13148441 cd13148, MATE_like_3, Uncharacterized subfamily of 0.002
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 0.002
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  520 bits (1342), Expect = 0.0
 Identities = 203/437 (46%), Positives = 293/437 (67%), Gaps = 1/437 (0%)

Query: 49  EARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLA 108
           EA+++  +A P++LT LL YS S++S++F+G LG L LA  SLA  F N+TG+S+L GLA
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 109 MGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHE 168
             ++T+CGQAFGA  YKL+G+ LQR +++LLL  +PI+ LWLN + ILL  GQ+ +IA  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 169 AQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLVSVLNLGL 228
           A  YL + +P L A +   PL+ YL+ Q I LPL + +  A++L+I +NYLLV VL LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 229 KGIALSSVWTNFNLVISLILYIMISGVHEKTWGGISLECFKEWRSLLNLAIPSCISVCLE 288
            G AL++  + + +V+ L+LYI  S  H+ TWGG S E F+ W   L LAIPS + +CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 289 WWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKK 348
           WW +EI++LL GLL      +A+  I + TTSL+Y+ P  +S   S RVGNELGA  PK+
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 349 AKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCP 408
           AKLAAI+ L+ S ++G    +   ++R++WA +FT D E+IAL + +LPI+ L ++ +  
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 409 QTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYSGFDFEGLWCGLLAAQGSCVV 468
           Q    GVLRG  R KLGA +NL  +YL+G+PV + L+F  G   +GLW GL+A      V
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 469 TMLFVVARTDWDLQAQR 485
            +L ++ RTDWD +A++
Sbjct: 420 ILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 513
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 99.98
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.89
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.89
PRK00187 464 multidrug efflux protein NorA; Provisional 99.89
PRK10189 478 MATE family multidrug exporter; Provisional 99.88
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.87
PRK01766 456 multidrug efflux protein; Reviewed 99.87
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.81
TIGR01695502 mviN integral membrane protein MviN. This model re 99.8
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.77
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.74
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.74
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.7
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.7
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.69
PRK10459492 colanic acid exporter; Provisional 99.68
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.65
PRK15099416 O-antigen translocase; Provisional 99.62
COG2244480 RfbX Membrane protein involved in the export of O- 99.57
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.37
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.32
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.2
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.05
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.43
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.38
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.16
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.11
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.95
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.94
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.91
COG4267467 Predicted membrane protein [Function unknown] 96.85
COG4267 467 Predicted membrane protein [Function unknown] 86.48
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-56  Score=445.58  Aligned_cols=435  Identities=26%  Similarity=0.342  Sum_probs=413.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCChh
Q 042512           46 AIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAARYK  125 (513)
Q Consensus        46 ~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  125 (513)
                      .++..|+++++++|.+++++++.+++++|++++||+|++++++.+++.++..++ ..+..|++.|+++.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            356899999999999999999999999999999999999999999999999988 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHHH
Q 042512          126 LLGLTLQRTILLLLLSSIPIAFL-WLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTF  204 (513)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  204 (513)
                      ++++..++++.++++++++..++ +.+.++++.+++.++|+.+.+..|+++..++.|+..+..++.+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999887776 99999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cC-CccchhHHHHHHHHHHHHHHHHHHHHHhcc-cccccCCCCHHhHHHHHHHHHHHhHH
Q 042512          205 CATFAIILHIPINYLLVSV-LN-LGLKGIALSSVWTNFNLVISLILYIMISGV-HEKTWGGISLECFKEWRSLLNLAIPS  281 (513)
Q Consensus       205 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~  281 (513)
                      .+++..++|+++|++|+++ ++ +|+.|+++||++++.+..++..+++.++++ ......+..+++++.+|++++.|.|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 57 999999999999999999999999987764 22222333367889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 042512          282 CISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGLLSSF  361 (513)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  361 (513)
                      ++++......+...+.+++++|+  +++|+|+++.++.++.+++..+++++.+|++++++|+||++++++..+.+..+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986  9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHH
Q 042512          362 MLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVA  441 (513)
Q Consensus       362 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~  441 (513)
                      +++...++.++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.+||.||++.+++.++++.|++.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 042512          442 VWLSFYSGFDFEGLWCGLLAAQGSCVVTMLFVVARTDWDLQAQ  484 (513)
Q Consensus       442 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (513)
                      +++.... +|..|+|+++..++.++.++..++++|.+|+++..
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAV  450 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            9998877 89999999999999999999999999999987754

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-16
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 1e-08
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 153/367 (41%), Gaps = 15/367 (4%)
Query: 106 GLAMGMETICGQAFGAARYKXXXXXXXXXXXXXXXSSIPIAFLWLNMKTILLFCGQEQDI 165
           GL M +  +  Q  GA R                  S+PI  +    + I+ F   E+ +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125
Query: 166 AHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLV---- 221
           A +   Y+   +  + A      LR +    S+T P        ++L+IP+N++ V    
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 185
Query: 222 SVLNLGLKGIALSSVWTNFNLVISLILYIMISG--VHEKTWGGISLECFKEWRSLLNLAI 279
               LG  G  +++    + +++ L+ YI+ S    H K +        KE   L  L  
Sbjct: 186 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245
Query: 280 PSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGN 339
           P   ++  E   + ++ LL   L      VA+  + +  +SL+++FP S+   VS RVG+
Sbjct: 246 PVAAALFFEVTLFAVVALLVAPL--GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGH 303
Query: 340 ELGANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPII 399
           +LG    K A +AA +GL++         + T + R   A ++T++  ++AL   +L   
Sbjct: 304 KLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 363
Query: 400 GLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAV------WLSFYSGFDFE 453
            + +  +  Q    G LRG        +     ++++G+P         WL+       +
Sbjct: 364 AIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLT-EQPLGAK 422
Query: 454 GLWCGLL 460
           G W G +
Sbjct: 423 GFWLGFI 429
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 8e-91
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  284 bits (728), Expect = 8e-91
 Identities = 100/453 (22%), Positives = 193/453 (42%), Gaps = 17/453 (3%)

Query: 48  KEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGL 107
           KEA  +  +A P+++  +       +  +  G +  + +A  S+A     +       GL
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSILFGVGL 67

Query: 108 AMGMETICGQAFGAARYKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAH 167
            M +  +  Q  GA R   +   + + ++L LL S+PI  +    + I+ F   E+ +A 
Sbjct: 68  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127

Query: 168 EAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLTFCATFAIILHIPINYLLV----SV 223
           +   Y+   +  + A      LR +    S+T P        ++L+IP+N++ V      
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 187

Query: 224 LNLGLKGIALSSVWTNFNLVISLILYIMISGV--HEKTWGGISLECFKEWRSLLNLAIPS 281
             LG  G  +++    + +++ L+ YI+ S    H K +        KE   L  L  P 
Sbjct: 188 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 247

Query: 282 CISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNEL 341
             ++  E   + ++ LL   L      VA+  + +  +SL+++FP S+   VS RVG++L
Sbjct: 248 AAALFFEVTLFAVVALLVAPL--GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 305

Query: 342 GANCPKKAKLAAIIGLLSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGL 401
           G    K A +AA +GL++         + T + R   A ++T++  ++AL   +L    +
Sbjct: 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 365

Query: 402 CELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVGMPVAVWLSFYS-----GFDFEGLW 456
            +  +  Q    G LRG        +     ++++G+P    L   +         +G W
Sbjct: 366 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 425

Query: 457 CGL---LAAQGSCVVTMLFVVARTDWDLQAQRA 486
            G    L+A    +   L+ + +   D+Q   A
Sbjct: 426 LGFIIGLSAAALMLGQRLYWLQKQSDDVQLHLA 458

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query513
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.79
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 85.13
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 81.09
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 80.25
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=6.9e-49  Score=397.90  Aligned_cols=432  Identities=21%  Similarity=0.353  Sum_probs=398.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCcCC
Q 042512           44 FLAIKEARRIANIALPMILTGLLLYSRSMISMLFLGRLGDLALAGGSLAIGFGNITGYSLLSGLAMGMETICGQAFGAAR  123 (513)
Q Consensus        44 ~~~~~~~~~i~~~~~p~~~~~~~~~l~~~~~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~  123 (513)
                      +..++..|++++.++|.++++++..+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.++|+.|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            45678899999999999999999999999999999999999999999999998776 67889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCChhhHH
Q 042512          124 YKLLGLTLQRTILLLLLSSIPIAFLWLNMKTILLFCGQEQDIAHEAQIYLLYSLPDLIALSFLHPLRIYLRTQSITLPLT  203 (513)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  203 (513)
                      +++.++.+++++.+.+++++++.+++.+.++++.+++.+++..+.+..|+++.+++.++..+...+.+++++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999999887777788888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-c---CCccchhHHHHHHHHHHHHHHHHHHHHHhccccc-c-cCCCCHHhHHHHHHHHHH
Q 042512          204 FCATFAIILHIPINYLLVSV-L---NLGLKGIALSSVWTNFNLVISLILYIMISGVHEK-T-WGGISLECFKEWRSLLNL  277 (513)
Q Consensus       204 ~~~~~~~~~~i~~~~~li~~-~---~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~  277 (513)
                      ..+++..++|+++++++++. +   ++|+.|+++++++++.+..++..++.+++++.++ + ++++.+++++..|+++++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975 3   6999999999999999999988777766543321 1 122335567889999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 042512          278 AIPSCISVCLEWWWYEIMILLCGLLLNPQATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANCPKKAKLAAIIGL  357 (513)
Q Consensus       278 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~  357 (513)
                      +.|.+++++...+...+++.+++++|+  +++|+|+++.++.++...+..+++++..|.+++++|++|.+++++..+++.
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999999999999965  999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhcCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q 042512          358 LSSFMLGFTALVFTAIVRNIWASMFTQDAEIIALTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKLGANINLGCFYLVG  437 (513)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  437 (513)
                      ++.++++++++++++++++++..+|++|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.++++.|+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh----cC-CCcchHHHHHHHHHHHHHHHHHHHHHhcc
Q 042512          438 MPVAVWLSFY----SG-FDFEGLWCGLLAAQGSCVVTMLFVVARTD  478 (513)
Q Consensus       438 i~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~  478 (513)
                      +|+++++.+.    ++ +|..|+|+++.+++.+..++..++++|..
T Consensus       402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887    67 89999999999999999988877666543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query513
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 87.97
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=87.97  E-value=8.8  Score=34.32  Aligned_cols=25  Identities=24%  Similarity=0.204  Sum_probs=12.1

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHH
Q 042512          225 NLGLKGIALSSVWTNFNLVISLILY  249 (513)
Q Consensus       225 ~~g~~g~a~a~~~~~~~~~~~~~~~  249 (513)
                      +.|..+..+......++..++....
T Consensus       406 ~~g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         406 FFGWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHH
Confidence            4565555554444444444444333