Citrus Sinensis ID: 042518

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
MASLSQIIFVSILLLIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN
cccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccHHcccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccc
cccHHHHHHHHHHHHHcHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccEEEHHHcHHHcccccccccHHHHHHHHHHcccccccccEEEcccccccccccHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHccccccccEccccccccc
MASLSQIIFVSILLLIISTQceaqlsptfygLDTLISTfatkgfsaRDLVALSGAHTIGRAQCAFFRDriynnqsdidagfastrrrqcpasggdsnlspldlvtprsfdnnyFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMadispltgtagQIRRVCNLVN
MASLSQIIFVSILLLIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCpasggdsnlspldLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADispltgtagqIRRVCNLVN
MAslsqiifvsillliisTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN
*****QIIFVSILLLIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGF*********************LVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCN***
***LSQIIFVSILLLIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCP**GGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN
MASLSQIIFVSILLLIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFAS************SNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN
**SLSQIIFVSILLLIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVC****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASLSQIIFVSILLLIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query182 2.2.26 [Sep-21-2011]
Q02200322 Lignin-forming anionic pe N/A no 0.901 0.509 0.689 1e-60
Q9M9Q9321 Peroxidase 5 OS=Arabidops yes no 0.829 0.470 0.690 8e-58
Q9LE15315 Peroxidase 4 OS=Arabidops no no 0.857 0.495 0.651 6e-55
Q9FLC0324 Peroxidase 52 OS=Arabidop no no 0.824 0.462 0.640 2e-49
P00434296 Peroxidase P7 OS=Brassica N/A no 0.824 0.506 0.601 5e-47
A7NY33321 Peroxidase 4 OS=Vitis vin no no 0.868 0.492 0.577 6e-47
P22195316 Cationic peroxidase 1 OS= N/A no 0.879 0.506 0.552 4e-46
Q9LVL1325 Peroxidase 68 OS=Arabidop no no 0.901 0.504 0.568 6e-45
P16147158 Peroxidase (Fragment) OS= N/A no 0.824 0.949 0.552 2e-44
Q0D3N0314 Peroxidase 2 OS=Oryza sat no no 0.895 0.519 0.524 1e-42
>sp|Q02200|PERX_NICSY Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1 Back     alignment and function desciption
 Score =  232 bits (591), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/164 (68%), Positives = 130/164 (79%)

Query: 19  TQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDID 78
           T  E  L   F  L+ LIS+FA+KG S RD+VALSGAHTIG+AQC  FRDRIY+N +DID
Sbjct: 159 TLAETDLPGPFDPLNRLISSFASKGLSTRDMVALSGAHTIGQAQCFLFRDRIYSNGTDID 218

Query: 79  AGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDS 138
           AGFASTRRRQCP  G + NL+PLDLVTP  FDNNYFKNL+QKKGLL SDQVLF+G STD+
Sbjct: 219 AGFASTRRRQCPQEGENGNLAPLDLVTPNQFDNNYFKNLIQKKGLLQSDQVLFNGGSTDN 278

Query: 139 IVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
           IV+EYS +   F SDFAAAMI+M DISPL+G  G IR+VC  VN
Sbjct: 279 IVSEYSNSARAFSSDFAAAMIKMGDISPLSGQNGIIRKVCGSVN 322
Plays an integral role in secondary cell wall biosynthesis by the polymerization of cinnamyl alcohols into lignin and by forming rigid cross-links between cellulose, pectin, hydroxy-proline-rich glycoproteins, and lignin.
Nicotiana sylvestris (taxid: 4096)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q9M9Q9|PER5_ARATH Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=3 SV=2 Back     alignment and function description
>sp|Q9LE15|PER4_ARATH Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=3 SV=1 Back     alignment and function description
>sp|Q9FLC0|PER52_ARATH Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1 Back     alignment and function description
>sp|P00434|PERP7_BRARA Peroxidase P7 OS=Brassica rapa PE=1 SV=3 Back     alignment and function description
>sp|A7NY33|PER4_VITVI Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1 Back     alignment and function description
>sp|P22195|PER1_ARAHY Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2 Back     alignment and function description
>sp|Q9LVL1|PER68_ARATH Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1 Back     alignment and function description
>sp|P16147|PERX_LUPPO Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 SV=2 Back     alignment and function description
>sp|Q0D3N0|PER2_ORYSJ Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query182
255561715 326 Lignin-forming anionic peroxidase precur 0.857 0.478 0.713 1e-60
400750 322 RecName: Full=Lignin-forming anionic per 0.901 0.509 0.689 5e-59
224163991183 predicted protein [Populus trichocarpa] 0.895 0.890 0.689 7e-59
255537343 320 Lignin-forming anionic peroxidase precur 0.857 0.487 0.710 9e-59
449445379 320 PREDICTED: lignin-forming anionic peroxi 0.895 0.509 0.682 9e-59
255537327 323 Lignin-forming anionic peroxidase precur 0.829 0.467 0.725 1e-58
449445298 316 PREDICTED: lignin-forming anionic peroxi 0.879 0.506 0.689 2e-58
356576113 323 PREDICTED: lignin-forming anionic peroxi 0.829 0.467 0.733 3e-58
225425963 331 PREDICTED: lignin-forming anionic peroxi 0.857 0.471 0.685 5e-58
225425961 324 PREDICTED: lignin-forming anionic peroxi 0.857 0.481 0.704 5e-58
>gi|255561715|ref|XP_002521867.1| Lignin-forming anionic peroxidase precursor, putative [Ricinus communis] gi|223538905|gb|EEF40503.1| Lignin-forming anionic peroxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 135/157 (85%), Gaps = 1/157 (0%)

Query: 27  PTFY-GLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTR 85
           P+F  GLD LIS F +KG SARD+VALSGAHT+G+AQC  FRDRIY+N ++IDAGFASTR
Sbjct: 170 PSFKDGLDRLISRFQSKGLSARDMVALSGAHTLGQAQCFTFRDRIYSNGTEIDAGFASTR 229

Query: 86  RRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSK 145
           +R CPA GGD+NL+PLDLVTP SFDNNYFKNL+Q+KGLL SDQ+L SG STDSIV+ YS+
Sbjct: 230 KRSCPAVGGDANLAPLDLVTPNSFDNNYFKNLMQRKGLLESDQILLSGGSTDSIVSGYSR 289

Query: 146 NCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
           + S F SDFA+AMI+M +I PLTGTAGQIRR+C+ +N
Sbjct: 290 SPSTFSSDFASAMIKMGNIDPLTGTAGQIRRICSAIN 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|400750|sp|Q02200.1|PERX_NICSY RecName: Full=Lignin-forming anionic peroxidase; Flags: Precursor gi|170203|gb|AAA34050.1| anionic peroxidase [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|224163991|ref|XP_002338628.1| predicted protein [Populus trichocarpa] gi|222873048|gb|EEF10179.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255537343|ref|XP_002509738.1| Lignin-forming anionic peroxidase precursor, putative [Ricinus communis] gi|223549637|gb|EEF51125.1| Lignin-forming anionic peroxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449445379|ref|XP_004140450.1| PREDICTED: lignin-forming anionic peroxidase-like [Cucumis sativus] gi|449526369|ref|XP_004170186.1| PREDICTED: lignin-forming anionic peroxidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255537327|ref|XP_002509730.1| Lignin-forming anionic peroxidase precursor, putative [Ricinus communis] gi|223549629|gb|EEF51117.1| Lignin-forming anionic peroxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449445298|ref|XP_004140410.1| PREDICTED: lignin-forming anionic peroxidase-like [Cucumis sativus] gi|449445300|ref|XP_004140411.1| PREDICTED: lignin-forming anionic peroxidase-like [Cucumis sativus] gi|449526367|ref|XP_004170185.1| PREDICTED: lignin-forming anionic peroxidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356576113|ref|XP_003556178.1| PREDICTED: lignin-forming anionic peroxidase-like [Glycine max] Back     alignment and taxonomy information
>gi|225425963|ref|XP_002269145.1| PREDICTED: lignin-forming anionic peroxidase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225425961|ref|XP_002274693.1| PREDICTED: lignin-forming anionic peroxidase-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query182
TAIR|locus:2012607321 AT1G14550 [Arabidopsis thalian 0.829 0.470 0.690 4.2e-57
TAIR|locus:2012597315 PER4 "peroxidase 4" [Arabidops 0.857 0.495 0.651 1.9e-51
TAIR|locus:2153529324 PRX52 "peroxidase 52" [Arabido 0.851 0.478 0.628 1.8e-46
TAIR|locus:2161193325 AT5G58400 [Arabidopsis thalian 0.862 0.483 0.581 3.2e-42
TAIR|locus:2161283316 AT5G58390 [Arabidopsis thalian 0.862 0.496 0.556 1.2e-41
TAIR|locus:2115335331 AT4G36430 [Arabidopsis thalian 0.818 0.450 0.467 3.6e-34
TAIR|locus:2053139337 AT2G18140 [Arabidopsis thalian 0.824 0.445 0.452 5.2e-33
TAIR|locus:2053129338 AT2G18150 [Arabidopsis thalian 0.824 0.443 0.433 2.3e-32
TAIR|locus:2154925336 AT5G66390 [Arabidopsis thalian 0.818 0.443 0.442 2.3e-32
TAIR|locus:2080928344 AT3G50990 [Arabidopsis thalian 0.829 0.438 0.468 2.9e-32
TAIR|locus:2012607 AT1G14550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 552 (199.4 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
 Identities = 105/152 (69%), Positives = 125/152 (82%)

Query:    32 LDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTRRRQCPA 91
             LD L   F+ KG + RDLVALSGAHTIG++QC  FRDR+Y N SDIDAGFASTR+R+CP 
Sbjct:   170 LDQLSGLFSKKGLNTRDLVALSGAHTIGQSQCFLFRDRLYENSSDIDAGFASTRKRRCPT 229

Query:    92 SGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLF-SGRSTDSIVAEYSKNCSKF 150
              GGD NL+ LDLVTP SFDNNY+KNL+QKKGLL +DQVLF SG STD IV+EYSKN SKF
Sbjct:   230 VGGDGNLAALDLVTPNSFDNNYYKNLMQKKGLLVTDQVLFGSGASTDGIVSEYSKNRSKF 289

Query:   151 KSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
              +DFA AMI+M +I PLTG+ G+IR++C+ VN
Sbjct:   290 AADFATAMIKMGNIEPLTGSNGEIRKICSFVN 321
GO:0004601 "peroxidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0071456 "cellular response to hypoxia" evidence=IEP
TAIR|locus:2012597 PER4 "peroxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153529 PRX52 "peroxidase 52" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161193 AT5G58400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161283 AT5G58390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115335 AT4G36430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053139 AT2G18140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053129 AT2G18150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154925 AT5G66390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080928 AT3G50990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P16147PERX_LUPPO1, ., 1, 1, ., 1, ., 70.55260.82410.9493N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.824
3rd Layer1.11.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query182
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 8e-74
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 1e-27
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 2e-14
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 2e-13
PLN02364250 PLN02364, PLN02364, L-ascorbate peroxidase 1 4e-10
PLN02879251 PLN02879, PLN02879, L-ascorbate peroxidase 3e-08
pfam00141180 pfam00141, peroxidase, Peroxidase 7e-08
PLN02608289 PLN02608, PLN02608, L-ascorbate peroxidase 4e-07
pfam00141180 pfam00141, peroxidase, Peroxidase 1e-04
cd00692328 cd00692, ligninase, Ligninase and other manganese- 4e-04
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  223 bits (571), Expect = 8e-74
 Identities = 80/165 (48%), Positives = 105/165 (63%), Gaps = 6/165 (3%)

Query: 23  AQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQ------SD 76
             L   F+ +  LIS FA+KG +  DLVALSGAHTIGRA C+ F DR+YN          
Sbjct: 134 GNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPT 193

Query: 77  IDAGFASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRST 136
           +D  +A+  R++CPA G D  L PLD  TP +FDN+Y+KNL+  +GLL SDQ L S   T
Sbjct: 194 LDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRGLLTSDQALLSDPRT 253

Query: 137 DSIVAEYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLV 181
            +IV  Y+ N   F  DFAAAM++M +I  LTG+ G+IR+ C +V
Sbjct: 254 RAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1 Back     alignment and domain information
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|178218 PLN02608, PLN02608, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173826 cd00692, ligninase, Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 182
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PLN02608289 L-ascorbate peroxidase 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
PLN02879251 L-ascorbate peroxidase 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 99.96
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 99.85
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 99.78
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.64
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.61
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 99.6
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 94.1
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-59  Score=406.86  Aligned_cols=168  Identities=36%  Similarity=0.643  Sum_probs=156.7

Q ss_pred             HhhchhccccCCCCCCCCHHHHHHHHHHCCCChhhhhhhhcccccccccccccCCCCCC-------CCCCCCHHHHHHhh
Q 042518           14 LLIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYN-------NQSDIDAGFASTRR   86 (182)
Q Consensus        14 ~~~~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~a~c~~f~~Rl~~-------~dp~~d~~~~~~L~   86 (182)
                      ++|++++++ +||+|+.++++|++.|++|||+.+|||+||||||||++||.+|.+||||       .||+|||.|+..|+
T Consensus       146 ~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~  224 (324)
T PLN03030        146 RVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQ  224 (324)
T ss_pred             CCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHh
Confidence            356677775 8999999999999999999999999999999999999999999999996       38999999999999


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCccchHHHHHHhhcccCccchhhhhcCcchHHHHHHHhhCh----hHHHHHHHHHHHHHh
Q 042518           87 RQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNC----SKFKSDFAAAMIEMA  162 (182)
Q Consensus        87 ~~Cp~~~~~~~~~~lD~~Tp~~fDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~~~----~~F~~~Fa~Am~KMg  162 (182)
                      ..||..++..+.++||+.||.+|||+||++|+.++|+|+|||+|++|++|+.+|++||.|+    +.|+++|++||+|||
T Consensus       225 ~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg  304 (324)
T PLN03030        225 ALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMS  304 (324)
T ss_pred             ccCCCCCCCCccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHc
Confidence            9999643333568899999999999999999999999999999999999999999999875    599999999999999


Q ss_pred             cCCCCCCCCCcccccCccCC
Q 042518          163 DISPLTGTAGQIRRVCNLVN  182 (182)
Q Consensus       163 ~i~vltG~~GeIR~~C~~vN  182 (182)
                      +|+||||.+||||++|++||
T Consensus       305 ~i~VlTG~~GEIRk~C~~vN  324 (324)
T PLN03030        305 NIGVKTGTNGEIRKVCSAIN  324 (324)
T ss_pred             cCCCCCCCCCceeccccccC
Confidence            99999999999999999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query182
1sch_A294 Peanut Peroxidase Length = 294 7e-47
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 3e-31
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 9e-30
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 3e-29
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 6e-28
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 1e-27
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 1e-27
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 1e-27
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 1e-27
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 1e-27
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 1e-27
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 1e-27
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 2e-27
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 3e-27
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 4e-27
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 1e-26
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 2e-26
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 2e-25
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 7e-21
1apx_A249 Crystal Structure Of Recombinant Ascorbate Peroxida 6e-06
1iyn_A295 Crystal Structure Of Chloroplastic Ascorbate Peroxi 8e-06
2vcf_X264 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 1e-05
1oaf_A261 Ascobate Peroxidase From Soybean Cytosol In Complex 1e-05
3zch_A261 Ascorbate Peroxidase W41a-h42m Mutant Length = 261 1e-05
2vcs_A261 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 1e-05
2y6b_A249 Ascorbate Peroxidase R38k Mutant Length = 249 1e-05
2ggn_X261 Conformational Mobility In The Active Site Of A Hem 1e-05
3zcg_A261 Ascorbate Peroxidase W41a-h42c Mutant Length = 261 1e-05
2xif_A249 The Structure Of Ascorbate Peroxidase Compound Ii L 1e-05
2y6a_A249 Ascorbate Peroxidase R38a Mutant Length = 249 2e-05
3zcy_A249 Ascorbate Peroxidase W41a-h42y Mutant Length = 249 2e-05
2cl4_X261 Ascorbate Peroxidase R172a Mutant Length = 261 2e-05
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure 
Iteration: 1

 Score =  182 bits (463), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 112/161 (69%), Gaps = 1/161 (0%)
Query: 22  EAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGF 81
            + L   F+ L  LIS F+ KGF+ ++LV LSGAHTIG+AQC  FR RIYN +S+ID  +
Sbjct: 135 NSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIYN-ESNIDPTY 193
Query: 82  ASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVA 141
           A + +  CP+ GGD+NLSP D+ TP  FDN Y+ NL  KKGLL SDQ LF+G STDS V 
Sbjct: 194 AKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQLFNGVSTDSQVT 253
Query: 142 EYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
            YS N + F +DF  AMI+M ++SPLTGT+GQIR  C   N
Sbjct: 254 AYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase Length = 249 Back     alignment and structure
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase From Tobacco Plants And Structural Insights For Its Instability Length = 295 Back     alignment and structure
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Length = 264 Back     alignment and structure
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With Ascorbate Length = 261 Back     alignment and structure
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant Length = 261 Back     alignment and structure
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Mutant H42a Length = 261 Back     alignment and structure
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant Length = 249 Back     alignment and structure
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme Peroxidase Length = 261 Back     alignment and structure
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant Length = 261 Back     alignment and structure
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii Length = 249 Back     alignment and structure
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant Length = 249 Back     alignment and structure
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant Length = 249 Back     alignment and structure
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant Length = 261 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query182
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 7e-85
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 2e-82
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 2e-81
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 3e-81
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 7e-81
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 8e-80
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 2e-77
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 1e-51
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 1e-31
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 5e-31
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 5e-28
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 1e-26
2e39_A344 Peroxidase; heme protein, coordination geometry of 2e-26
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 1e-25
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 4e-12
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 7e-11
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
 Score =  250 bits (642), Expect = 7e-85
 Identities = 89/157 (56%), Positives = 110/157 (70%), Gaps = 2/157 (1%)

Query: 26  SPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGFASTR 85
           +P F  L  LIS F+ KGF+ ++LV LSGAHTIG+AQC  FR RIYN  S+ID  +A + 
Sbjct: 140 APFF-NLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIYNE-SNIDPTYAKSL 197

Query: 86  RRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSK 145
           +  CP+ GGD+NLSP D+ TP  FDN Y+ NL  KKGLL SDQ LF+G STDS V  YS 
Sbjct: 198 QANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQLFNGVSTDSQVTAYSN 257

Query: 146 NCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
           N + F +DF  AMI+M ++SPLTGT+GQIR  C   N
Sbjct: 258 NAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query182
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 99.96
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 99.94
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 99.94
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 99.94
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 99.93
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 99.93
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 99.92
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 99.73
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=9.7e-62  Score=416.69  Aligned_cols=169  Identities=36%  Similarity=0.640  Sum_probs=161.1

Q ss_pred             HhhchhccccCCCCCCCCHHHHHHHHHHCCCChhhhhhhhcccccccccccccCCCCCC------CCCCCCHHHHHHhhh
Q 042518           14 LLIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYN------NQSDIDAGFASTRRR   87 (182)
Q Consensus        14 ~~~~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~a~c~~f~~Rl~~------~dp~~d~~~~~~L~~   87 (182)
                      ++|++++++.+||+|+.++++|++.|++|||+.+||||||||||||++||.+|.+|+||      +||+|||.|+..|+.
T Consensus       127 ~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~L~~  206 (304)
T 3hdl_A          127 TVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRN  206 (304)
T ss_dssp             SCCCHHHHHHHSCCTTCCHHHHHHHHHTTTCCHHHHHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHHHHH
T ss_pred             CCCCccccccCCCCCCCCHHHHHHHHHHcCCCHHHhhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHHHhc
Confidence            35677777888999999999999999999999999999999999999999999999996      499999999999999


Q ss_pred             cCCCCCC--CCCCCCCCCCCCCccchHHHHHHhhcccCccchhhhhcCcchHHHHHHHhhChhHHHHHHHHHHHHHhcCC
Q 042518           88 QCPASGG--DSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVAEYSKNCSKFKSDFAAAMIEMADIS  165 (182)
Q Consensus        88 ~Cp~~~~--~~~~~~lD~~Tp~~fDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~KMg~i~  165 (182)
                      .||.+++  +.+.++||+.||.+|||+||++|+.++|||+|||+|+.|++|+.+|++||.|++.||++|++||+|||+|+
T Consensus       207 ~Cp~~~~~~~~~~~~lD~~TP~~FDN~Yy~nL~~~~glL~SDq~L~~d~~t~~~V~~yA~~~~~F~~~Fa~AmvKmg~ig  286 (304)
T 3hdl_A          207 TCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIE  286 (304)
T ss_dssp             HSCTTCCTTSCCEEESCSSSTTSCSTHHHHHHHTTCCCSHHHHGGGSSHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTT
T ss_pred             cCCCCCCCCCccccCCCCCCcccccHHHHHHHHhCcCCCCCCHHHhcCccHHHHHHHhccCHHHHHHHHHHHHHHHHhcC
Confidence            9998665  56678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccCccCC
Q 042518          166 PLTGTAGQIRRVCNLVN  182 (182)
Q Consensus       166 vltG~~GeIR~~C~~vN  182 (182)
                      ||||.+||||++|++||
T Consensus       287 v~tg~~GeIR~~C~~~N  303 (304)
T 3hdl_A          287 VLTGTQGEIRTNCSVVN  303 (304)
T ss_dssp             CCCTTSSBCCSBTTBCC
T ss_pred             CCCCCCCeeeCCccccC
Confidence            99999999999999998
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 182
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 2e-53
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 2e-51
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 3e-51
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 9e-49
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 2e-45
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 2e-44
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 3e-29
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 6e-24
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 2e-23
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 3e-21
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 4e-20
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 2e-14
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Peanut (Arachis hypogaea) [TaxId: 3818]

 Score =  169 bits (430), Expect = 2e-53
 Identities = 89/161 (55%), Positives = 112/161 (69%), Gaps = 1/161 (0%)

Query: 22  EAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYNNQSDIDAGF 81
            + L   F+ L  LIS F+ KGF+ ++LV LSGAHTIG+AQC  FR RIYN +S+ID  +
Sbjct: 135 NSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIYN-ESNIDPTY 193

Query: 82  ASTRRRQCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGRSTDSIVA 141
           A + +  CP+ GGD+NLSP D+ TP  FDN Y+ NL  KKGLL SDQ LF+G STDS V 
Sbjct: 194 AKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQLFNGVSTDSQVT 253

Query: 142 EYSKNCSKFKSDFAAAMIEMADISPLTGTAGQIRRVCNLVN 182
            YS N + F +DF  AMI+M ++SPLTGT+GQIR  C   N
Sbjct: 254 AYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query182
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.84
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.83
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.79
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.79
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.77
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.77
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.75
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.66
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.47
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 86.61
d1yyda1 357 Fungal peroxidase (ligninase) {Basidomycetos fungu 86.15
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 82.46
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=1.7e-57  Score=388.78  Aligned_cols=169  Identities=43%  Similarity=0.732  Sum_probs=161.3

Q ss_pred             HhhchhccccCCCCCCCCHHHHHHHHHHCCCChhhhhhhhcccccccccccccCCCCCC------CCCCCCHHHHHHhhh
Q 042518           14 LLIISTQCEAQLSPTFYGLDTLISTFATKGFSARDLVALSGAHTIGRAQCAFFRDRIYN------NQSDIDAGFASTRRR   87 (182)
Q Consensus        14 ~~~~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~a~c~~f~~Rl~~------~dp~~d~~~~~~L~~   87 (182)
                      ++|++.+++.+||+|+.++++|++.|++|||+.+|||||+||||||++||.+|..|+|+      +||.+++.|+..|+.
T Consensus       127 ~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~  206 (304)
T d1fhfa_         127 LTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRA  206 (304)
T ss_dssp             SCCCHHHHHHHSCCTTCCHHHHHHHHHHTTCCHHHHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHH
T ss_pred             CccccccccccCCCCCCCHHHHHHHHHHcCCCHHHHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHH
Confidence            35777778888999999999999999999999999999999999999999999999996      589999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCccchHHHHHHhhcccCccchhhhhcCc--chHHHHHHHhhChhHHHHHHHHHHHHHhcCC
Q 042518           88 QCPASGGDSNLSPLDLVTPRSFDNNYFKNLVQKKGLLASDQVLFSGR--STDSIVAEYSKNCSKFKSDFAAAMIEMADIS  165 (182)
Q Consensus        88 ~Cp~~~~~~~~~~lD~~Tp~~fDn~Yy~~l~~~~glL~SD~~L~~d~--~t~~~V~~~A~~~~~F~~~Fa~Am~KMg~i~  165 (182)
                      .||.++...+++++|..||.+|||+||++++.++|+|+|||+|+.|+  +|+.+|+.||.|+++|+++|++||+|||+|+
T Consensus       207 ~c~~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~glL~SD~~L~~dp~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~lg  286 (304)
T d1fhfa_         207 RCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIG  286 (304)
T ss_dssp             HSCSSCSSCCEEESCSSSTTSCSTHHHHHHHTTCCSSHHHHTTTSSTTCSSHHHHHHHHHCHHHHHHHHHHHHHHHTTTT
T ss_pred             hcCCCCCCCcccccCCCCCCccccHHHHHHhhcCcccHhhHHHHhCCCchHHHHHHHHhhCHHHHHHHHHHHHHHHhcCC
Confidence            99987777778899999999999999999999999999999999996  7999999999999999999999999999999


Q ss_pred             CCCCCCCcccccCccCC
Q 042518          166 PLTGTAGQIRRVCNLVN  182 (182)
Q Consensus       166 vltG~~GeIR~~C~~vN  182 (182)
                      ||||.+||||++|+++|
T Consensus       287 v~tg~~GeiR~~C~~~N  303 (304)
T d1fhfa_         287 VLTGDEGEIRLQCNFVN  303 (304)
T ss_dssp             CCCTTSSBCCSBTTBCC
T ss_pred             CCCCCCCcccCcccCcC
Confidence            99999999999999998
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure