Citrus Sinensis ID: 042525

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
TQEFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSSVPNEVE
Secondary Structure (PSIPRED)
cccEEEEEcccccccHHHHHHcccccccEEEEccccHHHHcccccccEEEEEEHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccHHHHHHHccccccEEEEEccccccccccccccEEEEEcHHHHHHHHccccccc
Coil and Loop (DISEMBL)
TQEFRIFFndhtsndfntlfkslppernyfaasvpgAFYGALISQGIIASVNSSHSVRwlssvpneve
Flexible Loop (DISEMBL)
tqefriffndhtsndfNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVrwlssvpneve
Low Complexity Region (SEG)
TQEFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSSVPNEVE
Disordered region (IsUnstruct)
***FRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRW*********
Disordered Region (DISOPRED)
TQEFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSSVP****
Disordered Region (DISEMBL)
TQEFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSV***********
Disordered Region (DISPRO)
TQEFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSSVPNEV*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
TQEFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSSVPNEVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q9LS10	359	Probable S-adenosylmethio	no	no	0.955	0.181	0.492	1e-13
Q9FKR0	361	Probable S-adenosylmethio	no	no	0.955	0.180	0.477	3e-12
Q0J998	404	Indole-3-acetate O-methyl	no	no	0.955	0.160	0.425	9e-11
Q9SPV4	359	Salicylate O-methyltransf	N/A	no	1.0	0.189	0.430	1e-10
Q9FKD0	362	Probable S-adenosylmethio	no	no	0.955	0.179	0.402	7e-10
Q9FYZ9	364	Benzoate carboxyl methylt	N/A	no	0.970	0.181	0.462	1e-09
Q9FLN8	386	Indole-3-acetate O-methyl	no	no	0.955	0.168	0.437	6e-09
Q9FKC8	362	Probable S-adenosylmethio	no	no	0.955	0.179	0.373	2e-08
Q68CM3	365	Probable caffeine synthas	N/A	no	0.941	0.175	0.388	8e-08
Q9FZN8	369	Caffeine synthase 1 OS=Ca	N/A	no	0.955	0.176	0.383	6e-07

>sp|Q9LS10|MT810_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLP--PERNYFAASVPGAFYGALISQGIIASVNSSHSVRWL 60
           EF++FFND  +NDFNTLF++ P  PER YF+  VPG+FYG ++ +  I   ++S++  WL
Sbjct: 97  EFQVFFNDQPTNDFNTLFRTQPLSPEREYFSVGVPGSFYGRVLPRNSIHIGHTSYTTHWL 156

Query: 61  SSVPNEV 67
           S VP+ V
Sbjct: 157 SKVPDNV 163

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9FKR0|MT878_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38780 OS=Arabidopsis thaliana GN=At5g38780 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 2/67 (2%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPP--ERNYFAASVPGAFYGALISQGIIASVNSSHSVRWL 60
           EF+++FND  +NDFNTLF++ PP  ++ YF+  VPG+FYG ++ +  I   N+S +  WL
Sbjct: 99  EFQVYFNDLPNNDFNTLFRTQPPSSKQEYFSVGVPGSFYGRVLPRNSIHIGNTSFTTHWL 158

Query: 61  SSVPNEV 67
           S VP EV
Sbjct: 159 SKVPEEV 165

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q0J998|IAMT1_ORYSJ Indole-3-acetate O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=IAMT1 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 43/87 (49%), Gaps = 22/87 (25%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPP----------------------ERNYFAASVPGAFYG 40
           EF++FF+D  SNDFNTLF+ LPP                       R Y AA VPG FYG
Sbjct: 113 EFQVFFSDLPSNDFNTLFQLLPPLLAPVAGSLEECLAAGEGAATATRPYHAAGVPGTFYG 172

Query: 41  ALISQGIIASVNSSHSVRWLSSVPNEV 67
            L     I    S+ S+ WLS VP EV
Sbjct: 173 RLFPGESIDVFTSTFSLHWLSQVPEEV 199

Catalyzes the methylation of the free carboxyl end of the plant hormone indole-3-acetic acid (IAA). Converts IAA to IAA methyl ester (MeIAA). Regulates IAA activities by IAA methylation. Methylation of IAA plays an important role in regulating plant development and auxin homeostasis. MeIAA seems to be an inactive form of IAA.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 0

>sp|Q9SPV4|SAMT_CLABR Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 1   TQEFRIFFNDHTSNDFNTLFKSLPPERNY----FAASVPGAFYGALISQGIIASVNSSHS 56
           + E++IF ND   NDFN +F+SLP E +     F   VPG+FYG L  +  +  ++SS+S
Sbjct: 89  SPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYS 148

Query: 57  VRWLSSVPNEVE 68
           + WLS VP  +E
Sbjct: 149 LMWLSQVPIGIE 160

Catalyzes the methylation of the free carboxyl end of the plant hormone salicylic acid (SA). Converts SA to SA methyl ester (MSA). The volatile compound MSA is hypothesized to act as an airborne signal that triggers defense responses in uninfected plants. MSA is an important chemoattractant for moth pollinated flowering plants.

Clarkia breweri (taxid: 36903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 9

>sp|Q9FKD0|MT797_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g37970 OS=Arabidopsis thaliana GN=At5g37970 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLP--PERNYFAASVPGAFYGALISQGIIASVNSSHSVRWL 60
           EF++ FND  +NDFNTLF++ P    + YF+  VPG+F+G ++ +  +   ++S+++ WL
Sbjct: 100 EFQVCFNDQPNNDFNTLFRTQPFFSRKEYFSVGVPGSFHGRVLPKNSLHIGHTSYTLHWL 159

Query: 61  SSVPNEV 67
           S+VP  V
Sbjct: 160 SNVPQHV 166

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FYZ9|BAMT_ANTMA Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPER-NYFAASVPGAFYGALISQGIIASVNSSHSVRWLS 61
           EF +F ND   NDFN LFK L  E  N F   +PG+FYG L+ +  +    SS+S+ WLS
Sbjct: 94  EFEVFLNDLPDNDFNNLFKLLSHENGNCFVYGLPGSFYGRLLPKKSLHFAYSSYSIHWLS 153

Query: 62  SVPNEVE 68
            VP  +E
Sbjct: 154 QVPEGLE 160

Converts benzoic acid into the volatile ester methyl benzoates. This scent, mostly produced in a rhythmical, diurnal manner, attracts the pollinators.

Antirrhinum majus (taxid: 4151)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FLN8|IAMT1_ARATH Indole-3-acetate O-methyltransferase 1 OS=Arabidopsis thaliana GN=IAMT1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 15/80 (18%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPP---------------ERNYFAASVPGAFYGALISQGI 47
           EF  FF+D  SNDFNTLF+ LPP                R+YF A VPG+FY  L     
Sbjct: 103 EFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPART 162

Query: 48  IASVNSSHSVRWLSSVPNEV 67
           I   +S+ S+ WLS VP  V
Sbjct: 163 IDFFHSAFSLHWLSQVPESV 182

Catalyzes the methylation of the free carboxyl end of the plant hormone indole-3-acetic acid (IAA). Converts IAA to IAA methyl ester (MeIAA). Regulates IAA activities by IAA methylation. Methylation of IAA plays an important role in regulating plant development and auxin homeostasis. Required for correct leaf pattern formation. MeIAA seems to be an inactive form of IAA.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 0

>sp|Q9FKC8|MT799_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g37990 OS=Arabidopsis thaliana GN=At5g37990 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLP--PERNYFAASVPGAFYGALISQGIIASVNSSHSVRWL 60
           EF++ FND  +NDFNTLF++ P   ++ Y +  VPG+F+G ++ +  +   + ++++ WL
Sbjct: 100 EFQVCFNDQPNNDFNTLFRTQPISSKQAYLSVGVPGSFHGRVLPKNSLHIGHITYALHWL 159

Query: 61  SSVPNEV 67
           S+VP  V
Sbjct: 160 STVPQHV 166

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q68CM3|TCS2_CAMSI Probable caffeine synthase 2 OS=Camellia sinensis GN=TCS2 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 1   TQEFRIFFNDHTSNDFNTLFKSLPP--------ERNYFAASVPGAFYGALISQGIIASVN 52
           T E +++ ND   NDFNTLFK LP         E + +   VPG+F+G L  +  +  V+
Sbjct: 90  TLELQVYLNDLPGNDFNTLFKGLPSKVVGNKCEEVSCYVVGVPGSFHGRLFPRNSLHLVH 149

Query: 53  SSHSVRWLSSVP 64
           S +SV WL+  P
Sbjct: 150 SCYSVHWLTQAP 161

May be involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 1-N-methylation activity.

Camellia sinensis (taxid: 4442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9FZN8|TCS1_CAMSI Caffeine synthase 1 OS=Camellia sinensis GN=TCS1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 1   TQEFRIFFNDHTSNDFNTLFKSLP--------PERNYFAASVPGAFYGALISQGIIASVN 52
           T E +++ ND   NDFNTLFK L          E   +   VPG+F+G L  +  +  V+
Sbjct: 94  TLELQVYLNDLFGNDFNTLFKGLSSEVIGNKCEEVPCYVMGVPGSFHGRLFPRNSLHLVH 153

Query: 53  SSHSVRWLSSVPN 65
           SS+SV WL+  P 
Sbjct: 154 SSYSVHWLTQAPK 166

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 3-N- and 1-N-methylation activity.

Camellia sinensis (taxid: 4442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
297737614	347	unnamed protein product [Vitis vinifera]	0.955	0.187	0.584	2e-15
147833899	521	hypothetical protein VITISV_030502 [Viti	0.955	0.124	0.569	2e-15
225424405	361	PREDICTED: probable S-adenosylmethionine	0.955	0.180	0.584	2e-15
357444589	391	hypothetical protein MTR_1g108660 [Medic	0.955	0.166	0.6	2e-15
224118708	364	predicted protein [Populus trichocarpa]	0.970	0.181	0.560	2e-15
225424399	360	PREDICTED: probable S-adenosylmethionine	0.955	0.180	0.584	3e-15
225424401	353	PREDICTED: probable S-adenosylmethionine	0.955	0.184	0.584	4e-15
297737617	347	unnamed protein product [Vitis vinifera]	0.955	0.187	0.584	4e-15
297737616	402	unnamed protein product [Vitis vinifera]	0.955	0.161	0.584	4e-15
225466372	353	PREDICTED: probable S-adenosylmethionine	0.955	0.184	0.584	4e-15

>gi|297737614|emb|CBI26815.3| unnamed protein product [Vitis vinifera]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
           EF++FFNDH +NDFNTLF SLP ER YFA  VPG+F+G L  +  I  + SSH++ WLS 
Sbjct: 85  EFQVFFNDHVANDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMFSSHAIHWLSK 144

Query: 63  VPNEV 67
           VP E+
Sbjct: 145 VPEEL 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833899|emb|CAN73170.1| hypothetical protein VITISV_030502 [Vitis vinifera]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 48/65 (73%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
           EF +FFNDH +NDFN LF+SLPP R YFA  VPG+F+G L  +  +  V+SS+++ WLS 
Sbjct: 232 EFHVFFNDHXANDFNALFRSLPPSRPYFAVGVPGSFHGRLFPKSSLHIVHSSYALHWLSK 291

Query: 63  VPNEV 67
           VP EV
Sbjct: 292 VPKEV 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424405|ref|XP_002284898.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990-like [Vitis vinifera]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
           EF++FFNDH +NDFNTLF SLP ER YFA  VPG+F+G L  +  I  + SSH++ WLS 
Sbjct: 99  EFQVFFNDHVANDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMFSSHAIHWLSK 158

Query: 63  VPNEV 67
           VP E+
Sbjct: 159 VPEEL 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444589|ref|XP_003592572.1| hypothetical protein MTR_1g108660 [Medicago truncatula] gi|355481620|gb|AES62823.1| hypothetical protein MTR_1g108660 [Medicago truncatula]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 48/65 (73%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
           EF++FFND  SNDFNTLFK LP  RNYFAA VPG+FYG L  +  +  V+SS S+ W+S 
Sbjct: 129 EFQVFFNDQISNDFNTLFKKLPSNRNYFAAGVPGSFYGRLFPKESLNVVHSSASLNWISK 188

Query: 63  VPNEV 67
           VP E+
Sbjct: 189 VPKEI 193

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118708|ref|XP_002317887.1| predicted protein [Populus trichocarpa] gi|222858560|gb|EEE96107.1| predicted protein [Populus trichocarpa]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 49/66 (74%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
           EF++F NDH  NDFNTLFKSLPP RNY+ A +PG+F+G L     +  V++S+++ WLS 
Sbjct: 102 EFQVFLNDHALNDFNTLFKSLPPNRNYYVAGMPGSFHGRLFPNDSLHIVHTSYALNWLSQ 161

Query: 63  VPNEVE 68
           VP EVE
Sbjct: 162 VPKEVE 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424399|ref|XP_002281366.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Vitis vinifera] gi|297737618|emb|CBI26819.3| unnamed protein product [Vitis vinifera]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
           EF++FFNDH +NDFNTLF SLP ER YFA  VPG+F+G L  +  I  + SSH++ WLS 
Sbjct: 99  EFQVFFNDHVANDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMFSSHALHWLSK 158

Query: 63  VPNEV 67
           VP E+
Sbjct: 159 VPEEL 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424401|ref|XP_002281378.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Vitis vinifera]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 47/65 (72%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
           EF++FFNDH  NDFNTLF SLP ER YFA  VPG+F+G L  +  I  + SSH++ WLS 
Sbjct: 91  EFQVFFNDHVGNDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMFSSHALHWLSK 150

Query: 63  VPNEV 67
           VP E+
Sbjct: 151 VPEEL 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737617|emb|CBI26818.3| unnamed protein product [Vitis vinifera]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 47/65 (72%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
           EF++FFNDH  NDFNTLF SLP ER YFA  VPG+F+G L  +  I  + SSH++ WLS 
Sbjct: 85  EFQVFFNDHVGNDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMFSSHALHWLSK 144

Query: 63  VPNEV 67
           VP E+
Sbjct: 145 VPEEL 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737616|emb|CBI26817.3| unnamed protein product [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 47/65 (72%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
           EF++FFNDH  NDFNTLF SLP ER YFA  VPG+F+G L  +  I  + SSH++ WLS 
Sbjct: 140 EFQVFFNDHVGNDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMFSSHALHWLSK 199

Query: 63  VPNEV 67
           VP E+
Sbjct: 200 VPEEL 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466372|ref|XP_002276659.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 47/65 (72%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
           EF++FFNDH  NDFNTLF SLP ER YFA  VPG+F+G L  +  I  + SSH++ WLS 
Sbjct: 91  EFQVFFNDHVGNDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMFSSHALHWLSK 150

Query: 63  VPNEV 67
           VP E+
Sbjct: 151 VPEEL 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
TAIR|locus:2082112	348	FAMT "farnesoic acid carboxyl-	0.970	0.189	0.5	2.5e-14
TAIR|locus:2200186	363	AT1G68040 [Arabidopsis thalian	0.955	0.179	0.538	4.7e-14
TAIR|locus:2082117	379	AT3G44870 "AT3G44870" [Arabido	0.970	0.174	0.484	5.4e-14
TAIR|locus:2144461	359	AT5G38100 [Arabidopsis thalian	0.955	0.181	0.492	7.7e-14
TAIR|locus:2082157	348	AT3G44840 [Arabidopsis thalian	0.970	0.189	0.469	1.2e-13
TAIR|locus:2166640	361	AT5G38780 [Arabidopsis thalian	0.955	0.180	0.477	6e-13
TAIR|locus:504956193	351	AT1G15125 [Arabidopsis thalian	0.985	0.190	0.477	1.5e-12
TAIR|locus:2131483	376	GAMT1 "AT4G26420" [Arabidopsis	0.955	0.172	0.471	6.4e-11
TAIR|locus:2033409	353	PXMT1 [Arabidopsis thaliana (t	0.955	0.184	0.4	1.9e-09
TAIR|locus:2033414	353	AT1G66690 "AT1G66690" [Arabido	0.955	0.184	0.4	2.5e-09

TAIR|locus:2082112 FAMT "farnesoic acid carboxyl-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 33/66 (50%), Positives = 51/66 (77%)

Query:     3 EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
             EF++FFND ++NDFNTLFK+LPP R YFA+ VPG+F+G ++ +  +    SS+S+ ++S 
Sbjct:    89 EFQVFFNDSSNNDFNTLFKTLPPARLYFASGVPGSFFGRVLPKNSLHVGVSSYSLHFVSK 148

Query:    63 VPNEVE 68
             VP E++
Sbjct:   149 VPKEIK 154

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0019010 "farnesoic acid O-methyltransferase activity" evidence=IDA

TAIR|locus:2200186 AT1G68040 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 35/65 (53%), Positives = 44/65 (67%)

Query:     3 EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
             EF +FFND   NDFNTLF SLP +R+Y A  VPG+FYG ++ Q  +  V +  +  WLSS
Sbjct:    98 EFLVFFNDLPQNDFNTLFTSLPQDRSYLAVGVPGSFYGRVLPQSSVHIVVTMGATHWLSS 157

Query:    63 VPNEV 67
             VP EV
Sbjct:   158 VPKEV 162

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:2082117 AT3G44870 "AT3G44870" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 5.4e-14, P = 5.4e-14
 Identities = 32/66 (48%), Positives = 51/66 (77%)

Query:     3 EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
             EF++FFND ++NDFNTLFK+LPP R YFA+ VPG+F+G ++ +  +    S++S+ ++S 
Sbjct:    86 EFQVFFNDSSNNDFNTLFKTLPPARLYFASGVPGSFFGRVLPRNSLHLGVSAYSLHFISK 145

Query:    63 VPNEVE 68
             +P EV+
Sbjct:   146 IPKEVK 151

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:2144461 AT5G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 7.7e-14, P = 7.7e-14
 Identities = 33/67 (49%), Positives = 48/67 (71%)

Query:     3 EFRIFFNDHTSNDFNTLFKSLP--PERNYFAASVPGAFYGALISQGIIASVNSSHSVRWL 60
             EF++FFND  +NDFNTLF++ P  PER YF+  VPG+FYG ++ +  I   ++S++  WL
Sbjct:    97 EFQVFFNDQPTNDFNTLFRTQPLSPEREYFSVGVPGSFYGRVLPRNSIHIGHTSYTTHWL 156

Query:    61 SSVPNEV 67
             S VP+ V
Sbjct:   157 SKVPDNV 163

GO:0008168 "methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2082157 AT3G44840 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 31/66 (46%), Positives = 49/66 (74%)

Query:     3 EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
             EF++FFND ++NDFNTLFK+LPP R YFA  VP +F+G ++ +  +    SS+S+ +LS 
Sbjct:    89 EFQVFFNDSSNNDFNTLFKTLPPARKYFATGVPASFFGRVLPRSSLHVGVSSYSLHFLSK 148

Query:    63 VPNEVE 68
             +P +++
Sbjct:   149 IPKKIK 154

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166640 AT5G38780 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 32/67 (47%), Positives = 47/67 (70%)

Query:     3 EFRIFFNDHTSNDFNTLFKSLPP--ERNYFAASVPGAFYGALISQGIIASVNSSHSVRWL 60
             EF+++FND  +NDFNTLF++ PP  ++ YF+  VPG+FYG ++ +  I   N+S +  WL
Sbjct:    99 EFQVYFNDLPNNDFNTLFRTQPPSSKQEYFSVGVPGSFYGRVLPRNSIHIGNTSFTTHWL 158

Query:    61 SSVPNEV 67
             S VP EV
Sbjct:   159 SKVPEEV 165

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:504956193 AT1G15125 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 32/67 (47%), Positives = 45/67 (67%)

Query:     1 TQEFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWL 60
             T +F++FFND +  DFN LF  LPP+R YF A VPG+FYG L  +  +    SS ++ WL
Sbjct:    83 TPQFQVFFNDVSHTDFNALFALLPPQRPYFVAGVPGSFYGNLFPKAHLNLAYSSCALCWL 142

Query:    61 SSVPNEV 67
             S +P+E+
Sbjct:   143 SDLPSEL 149

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:2131483 GAMT1 "AT4G26420" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 33/70 (47%), Positives = 46/70 (65%)

Query:     3 EFRIFFNDHTSNDFNTLFKSLPPE-----RNYFAASVPGAFYGALISQGIIASVNSSHSV 57
             EF +FF+D +SNDFN LF+SL  +     R YFAA VPG+FY  L  +G +  V +  ++
Sbjct:    97 EFEVFFSDLSSNDFNALFRSLDEKVNGSSRKYFAAGVPGSFYKRLFPKGELHVVVTMSAL 156

Query:    58 RWLSSVPNEV 67
             +WLS VP +V
Sbjct:   157 QWLSQVPEKV 166

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IDA

GO:0010341 "gibberellin carboxyl-O-methyltransferase activity" evidence=IDA

TAIR|locus:2033409 PXMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query:     3 EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
             EF++ FND + NDFNTLF++LPP R YF+A VPG+F+  ++ +        S++  + S 
Sbjct:    94 EFQVLFNDFSLNDFNTLFQTLPPGRRYFSAGVPGSFFERVLPKESFHIGVMSYAFHFTSK 153

Query:    63 VPNEV 67
             +P  +
Sbjct:   154 IPKGI 158

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IDA

TAIR|locus:2033414 AT1G66690 "AT1G66690" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query:     3 EFRIFFNDHTSNDFNTLFKSLPPERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSS 62
             EF++ FND   NDFNTLF++LPP R YF+A VPG+F+  ++ +        S++  + S 
Sbjct:    94 EFQVLFNDLRINDFNTLFQTLPPGRRYFSAGVPGSFFNRVLPKQSFHIAVMSYAFLFTSK 153

Query:    63 VPNEV 67
             +P  +
Sbjct:   154 IPKGI 158

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	68
pfam03492	331	pfam03492, Methyltransf_7, SAM dependent carboxyl	2e-23
PLN02668	386	PLN02668, PLN02668, indole-3-acetate carboxyl meth	7e-17

>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase

 Score = 89.7 bits (223), Expect = 2e-23
 Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 4/70 (5%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPE----RNYFAASVPGAFYGALISQGIIASVNSSHSVR 58
           EF++FFND  SNDFNTLFK LPP     R+YF + VPG+FYG L  +  +  V+SS+S+ 
Sbjct: 56  EFQVFFNDLPSNDFNTLFKLLPPFQKKKRSYFVSGVPGSFYGRLFPRNSLHFVHSSYSLH 115

Query: 59  WLSSVPNEVE 68
           WLS VP  +E
Sbjct: 116 WLSQVPKGLE 125

This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331

>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase

 Score = 72.2 bits (177), Expect = 7e-17
 Identities = 36/81 (44%), Positives = 43/81 (53%), Gaps = 16/81 (19%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPP----------------ERNYFAASVPGAFYGALISQG 46
           EF  FF+D  SNDFNTLF+ LPP                 R+YFAA VPG+FY  L    
Sbjct: 102 EFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPAR 161

Query: 47  IIASVNSSHSVRWLSSVPNEV 67
            I   +S+ S+ WLS VP  V
Sbjct: 162 SIDVFHSAFSLHWLSQVPESV 182

Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	100.0
PLN02668	386	indole-3-acetate carboxyl methyltransferase	100.0
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	86.71
KOG2940	325	consensus Predicted methyltransferase [General fun	85.96

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=100.00  E-value=1.1e-36  Score=223.88  Aligned_cols=68  Identities=54%  Similarity=0.940  Sum_probs=53.6

Q ss_pred             CceEEEEeCCCCCCcHHHHhhcCCCC-------ccceEEecccccccccccCCceeEEEcccccccccCCCCCCC
Q 042525            1 TQEFRIFFNDHTSNDFNTLFKSLPPE-------RNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSSVPNEVE   68 (68)
Q Consensus         1 ~~e~~v~~nDlP~NDFn~lF~~l~~~-------~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alhWLS~~P~~l~   68 (68)
                      +|||||+|||||+||||+||++|++.       ++||++|||||||+||||++||||+||++|||||||+|+++.
T Consensus        54 ~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~  128 (334)
T PF03492_consen   54 PPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELV  128 (334)
T ss_dssp             --EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCC
T ss_pred             CCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccc
Confidence            48999999999999999999999876       699999999999999999999999999999999999999873

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=100.00  E-value=4.8e-35  Score=221.03  Aligned_cols=67  Identities=54%  Similarity=0.924  Sum_probs=62.6

Q ss_pred             CceEEEEeCCCCCCcHHHHhhcCCCC----------------ccceEEecccccccccccCCceeEEEcccccccccCCC
Q 042525            1 TQEFRIFFNDHTSNDFNTLFKSLPPE----------------RNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSSVP   64 (68)
Q Consensus         1 ~~e~~v~~nDlP~NDFn~lF~~l~~~----------------~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alhWLS~~P   64 (68)
                      +||+||++||||+||||+||++|+++                ++||++|||||||+||||++||||+||++|||||||+|
T Consensus       100 ~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP  179 (386)
T PLN02668        100 PPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVP  179 (386)
T ss_pred             CCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccceecccCc
Confidence            47999999999999999999999752                24999999999999999999999999999999999999


Q ss_pred             CCC
Q 042525           65 NEV   67 (68)
Q Consensus        65 ~~l   67 (68)
                      +++
T Consensus       180 ~~l  182 (386)
T PLN02668        180 ESV  182 (386)
T ss_pred             hhh
Confidence            986

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=86.71  E-value=0.63  Score=26.13  Aligned_cols=28  Identities=14%  Similarity=0.018  Sum_probs=21.6

Q ss_pred             ecccccccccccCCceeEEEcccccccc
Q 042525           33 SVPGAFYGALISQGIIASVNSSHSVRWL   60 (68)
Q Consensus        33 ~vpgSFy~rlfP~~Svh~~~Ss~alhWL   60 (68)
                      -+-+++..--+|++|+|.+++..++||+
T Consensus        46 ~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen   46 FRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             heeehHHhCccccccccccccccceeec
Confidence            3445666668899999999999999998

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=85.96  E-value=0.22  Score=37.77  Aligned_cols=24  Identities=21%  Similarity=0.470  Sum_probs=21.9

Q ss_pred             ccCCceeEEEcccccccccCCCCC
Q 042525           43 ISQGIIASVNSSHSVRWLSSVPNE   66 (68)
Q Consensus        43 fP~~Svh~~~Ss~alhWLS~~P~~   66 (68)
                      |-++|+|+++||.++||....|..
T Consensus       133 f~ens~DLiisSlslHW~NdLPg~  156 (325)
T KOG2940|consen  133 FKENSVDLIISSLSLHWTNDLPGS  156 (325)
T ss_pred             ccccchhhhhhhhhhhhhccCchH
Confidence            778999999999999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	68
1m6e_X	359	Crystal Structure Of Salicylic Acid Carboxyl Methyl		8e-12
3b5i_A	374	Crystal Structure Of Indole-3-Acetic Acid Methyltra		4e-10
2eg5_A	372	The Structure Of Xanthosine Methyltransferase Lengt		3e-05
2efj_A	384	The Structure Of 1,7 Dimethylxanthine Methyltransfe		4e-05

>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 1   TQEFRIFFNDHTSNDFNTLFKSLPPERNY----FAASVPGAFYGALISQGIIASVNSSHS 56
           + E++IF ND   NDFN +F+SLP E +     F   VPG+FYG L  +  +  ++SS+S
Sbjct: 89  SPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYS 148
Query: 57  VRWLSSVPNEVE 68
           + WLS VP  +E
Sbjct: 149 LMWLSQVPIGIE 160

>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid Methyltransferase Length = 374

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 15/80 (18%)
Query: 3   EFRIFFNDHTSNDFNTLFKSLPP---------------ERNYFAASVPGAFYGALISQGI 47
           EF  FF+D  SNDFNTLF+ LPP                R+YF A VPG+FY  L     
Sbjct: 91  EFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPART 150
Query: 48  IASVNSSHSVRWLSSVPNEV 67
           I   +S+ S+ WLS VP  V
Sbjct: 151 IDFFHSAFSLHWLSQVPESV 170

>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 5   RIFFNDHTSNDFNTLFKSLPP-----ER-------NYFAASVPGAFYGALISQGIIASVN 52
           +IF ND   NDFN++FK LP      E+       +    ++PG+FY  L  +  +  ++
Sbjct: 96  QIFLNDLFPNDFNSVFKLLPSFYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLH 155
Query: 53  SSHSVRWLSSVPN 65
           S + ++WLS VP+
Sbjct: 156 SCYCLQWLSQVPS 168

>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 4   FRIFFNDHTSNDFNTLFKSLPP-ERNY-----------FAASVPGAFYGALISQGIIASV 51
            +IF ND   NDFN++FK LP   RN               ++PG+FY  L  +  +  +
Sbjct: 94  IQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFL 153
Query: 52  NSSHSVRWLSSVPN 65
           +S + + WLS VP+
Sbjct: 154 HSCYCLHWLSQVPS 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	68
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	4e-12
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	6e-11
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	7e-10

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359

 Score = 58.2 bits (140), Expect = 4e-12
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 1   TQEFRIFFNDHTSNDFNTLFKSLPPER----NYFAASVPGAFYGALISQGIIASVNSSHS 56
           + E++IF ND   NDFN +F+SLP E       F   VPG+FYG L  +  +  ++SS+S
Sbjct: 89  SPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYS 148

Query: 57  VRWLSSVPNEVE 68
           + WLS VP  +E
Sbjct: 149 LMWLSQVPIGIE 160

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374

 Score = 54.8 bits (131), Expect = 6e-11
 Identities = 35/81 (43%), Positives = 42/81 (51%), Gaps = 15/81 (18%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPP---------------ERNYFAASVPGAFYGALISQGI 47
           EF  FF+D  SNDFNTLF+ LPP                R+YF A VPG+FY  L     
Sbjct: 91  EFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPART 150

Query: 48  IASVNSSHSVRWLSSVPNEVE 68
           I   +S+ S+ WLS VP  V 
Sbjct: 151 IDFFHSAFSLHWLSQVPESVT 171

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384

 Score = 51.8 bits (123), Expect = 7e-10
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 12/77 (15%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPERN------------YFAASVPGAFYGALISQGIIAS 50
             +IF ND   NDFN++FK LP                    ++PG+FY  L  +  +  
Sbjct: 93  TIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHF 152

Query: 51  VNSSHSVRWLSSVPNEV 67
           ++S + + WLS VP+ +
Sbjct: 153 LHSCYCLHWLSQVPSGL 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	99.97
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	99.97
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.97

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=99.97  E-value=9.3e-33  Score=204.27  Aligned_cols=67  Identities=45%  Similarity=0.829  Sum_probs=63.2

Q ss_pred             CceEEEEeCCCCCCcHHHHhhcCCCC----ccceEEecccccccccccCCceeEEEcccccccccCCCCCC
Q 042525            1 TQEFRIFFNDHTSNDFNTLFKSLPPE----RNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSSVPNEV   67 (68)
Q Consensus         1 ~~e~~v~~nDlP~NDFn~lF~~l~~~----~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alhWLS~~P~~l   67 (68)
                      .|||||++||||+||||+||++|+.+    ++||++|||||||+||||++|+|++||++||||||++|+++
T Consensus        89 ~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l  159 (359)
T 1m6e_X           89 SPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGI  159 (359)
T ss_dssp             CCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCC
T ss_pred             CCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhh
Confidence            48999999999999999999999863    57999999999999999999999999999999999999875

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=99.97  E-value=1.6e-32  Score=204.64  Aligned_cols=67  Identities=34%  Similarity=0.676  Sum_probs=61.9

Q ss_pred             CceEEEEeCCCCCCcHHHHhhcCCC------------CccceEEecccccccccccCCceeEEEcccccccccCCCCCC
Q 042525            1 TQEFRIFFNDHTSNDFNTLFKSLPP------------ERNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSSVPNEV   67 (68)
Q Consensus         1 ~~e~~v~~nDlP~NDFn~lF~~l~~------------~~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alhWLS~~P~~l   67 (68)
                      .|||||++||||+||||+||++|++            .++||++|||||||+||||++|+|++||++||||||++|+++
T Consensus        91 ~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l  169 (384)
T 2efj_A           91 RPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGL  169 (384)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC-
T ss_pred             CCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhh
Confidence            3899999999999999999999975            247999999999999999999999999999999999999875

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.97  E-value=7.7e-32  Score=199.77  Aligned_cols=67  Identities=52%  Similarity=0.910  Sum_probs=63.0

Q ss_pred             CceEEEEeCCCCCCcHHHHhhcCCCC---------------ccceEEecccccccccccCCceeEEEcccccccccCCCC
Q 042525            1 TQEFRIFFNDHTSNDFNTLFKSLPPE---------------RNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSSVPN   65 (68)
Q Consensus         1 ~~e~~v~~nDlP~NDFn~lF~~l~~~---------------~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alhWLS~~P~   65 (68)
                      +||+||++||||+||||+||++|+++               ++||++|||||||+|+||++|+|+++|++||||||++|+
T Consensus        89 ~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~  168 (374)
T 3b5i_A           89 PPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPE  168 (374)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCG
T ss_pred             CCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCch
Confidence            48999999999999999999999864               359999999999999999999999999999999999998


Q ss_pred             CC
Q 042525           66 EV   67 (68)
Q Consensus        66 ~l   67 (68)
                      ++
T Consensus       169 ~l  170 (374)
T 3b5i_A          169 SV  170 (374)
T ss_dssp             GG
T ss_pred             hh
Confidence            65

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	68
d1m6ex_	359	c.66.1.35 (X:) Salicylic acid carboxyl methyltrans	4e-16

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

 Score = 68.0 bits (166), Expect = 4e-16
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 3   EFRIFFNDHTSNDFNTLFKSLPPER----NYFAASVPGAFYGALISQGIIASVNSSHSVR 58
           E++IF ND   NDFN +F+SLP E       F   VPG+FYG L  +  +  ++SS+S+ 
Sbjct: 91  EYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLM 150

Query: 59  WLSSVPNEVE 68
           WLS VP  +E
Sbjct: 151 WLSQVPIGIE 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	68
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	100.0

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=100.00  E-value=6.2e-37  Score=225.68  Aligned_cols=68  Identities=46%  Similarity=0.834  Sum_probs=64.0

Q ss_pred             CceEEEEeCCCCCCcHHHHhhcCCCC----ccceEEecccccccccccCCceeEEEcccccccccCCCCCCC
Q 042525            1 TQEFRIFFNDHTSNDFNTLFKSLPPE----RNYFAASVPGAFYGALISQGIIASVNSSHSVRWLSSVPNEVE   68 (68)
Q Consensus         1 ~~e~~v~~nDlP~NDFn~lF~~l~~~----~~~f~~~vpgSFy~rlfP~~Svh~~~Ss~alhWLS~~P~~l~   68 (68)
                      +|||||+|||||+||||+||++|+..    ++||++|||||||+||||++||||+||++|||||||+|+++.
T Consensus        89 ~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~  160 (359)
T d1m6ex_          89 SPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIE  160 (359)
T ss_dssp             CCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCC
T ss_pred             CCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhhhcCCCCceEEeeehhhhhhhhcCCcccc
Confidence            48999999999999999999999865    469999999999999999999999999999999999999873