Citrus Sinensis ID: 042537

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------79
Protein Sequence
MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKCPDEDSAASPERDDANTPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccccccccccccccccccccccccEEEccccccEEEEEccccccccccEEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHcccccccEEEccccccccccccccHHcccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccEEEcccccccccccHHHHccccccEEEccccccEEEEccccccccccccEEEccccEEEEEEcccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEccccccccccccccccccccccEEEccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccEEEEEccHHHHHcccccEEEcccccccccccHHHHcccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHcccccccccccccEEcccccccccccccEEEEEEEEEEEcccccEEcccccccEEEEccccccccccHHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccccHHHHccccccEEEccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccccHHHccccccEEEEcccccccccccHHHHHHHHccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEccccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHcccccccEEEEcccccccccccHHHHcccccEEEEEccccccccccHHHHHHHHHHcEEEcccccccccccHHHHccccccEEEEEcccccccccccccccccEEEcccccccccccHHHcccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHcHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccHHHcEEccccccccccccHHHcccHHHHHHHHHHcccccccccHHHcccccEEEEEccEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MEEEREALLEFKQSLVDEYGIlsswgreddkrdccywrgvrcsnttgHVIVLDLQVlvhseplkgtispsllklyhlrhldlsendfsgsripefIGSLNKLrylslssaefegpipsqlgnlsrlkylDLSYINlnksrdwlriidklpslrtlnlehchlppiipsdllhlnfstsSLGALYLFEnslsssiypwLFNISSKLVVLDLdsnllqgsllepfDRMVSLRTLYLGFNELEELflgknrlnGTINQWLSRMYKldalslsgnsltgVVTESVFSELSNlkalhlddnsftlkfshdwippFQLIIILLgscqmgphfpkwlqtqnqievldisdagisdtvpdwfwdlshtiadfnlsnnhikgklpnlslrfdpfsssidissnyfeglipplpsnasvlnlsrnkfsESISFLCSinghklefLDLSnnilsgrlpdcwmqFDRLAVLSLANnffsgkipksmgflHSIQTLSLYNNSLIGELPSFFKSCSQLILMDlgknglsgeiptwigeglPKLVVLSLksnkfhgnipfqvcQLSYIQILDLSLNnisgiipkclnnftgmaqksssnlaitsnytfeRQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSmnklsgtipEEIMDLVGLVALNlsrnnltgqitpkidqlksldfldlsqnqfvggipsslcqlSRLSVMNLSynnlsgkiplgtqlqsfnasvyagnpelcglplrnkcpdedsaasperddantpegedqlITFGFYVSVILGFFIGFWGVCGTLL
Flexible Loop (DISEMBL)
MEEEREALLEFKQSLVDEygilsswgreddkrdCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKCPDEDSAASPERDDANTPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL
Low Complexity Region (SEG)
MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSllklyhlrhldlSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTlylgfneleelflgKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRfdpfsssidissNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKCPDEDSAASPERDDANTPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL
Disordered region (IsUnstruct)
********LEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPL*************************QLITFGFYVSVILGFFIGFWGVCGT**
Disordered Region (DISOPRED)
MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQK*****AITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP***************************LITFGFYVSVILGFFIGFWGVCGTLL
Disordered Region (DISEMBL)
MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKC*****************EGEDQLITFGFYVSVILGFFIGFWGVCGTLL
Disordered Region (DISPRO)
MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKC******************GEDQLITFGFYVSVILGFFIGFWGVCGTLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKCPDEDSAASPERDDANTPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	789	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.927	0.864	0.295	1e-67
Q9FL28	1173	LRR receptor-like serine/	no	no	0.896	0.602	0.311	1e-65
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.841	0.531	0.320	6e-59
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.804	0.507	0.318	5e-58
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.842	0.603	0.310	9e-58
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.893	0.620	0.311	2e-57
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.920	0.659	0.298	2e-56
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.889	0.602	0.292	8e-53
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.827	0.547	0.295	5e-52
C0LGT6	1031	LRR receptor-like serine/	no	no	0.743	0.569	0.289	9e-52

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  258 bits (659), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 246/833 (29%), Positives = 396/833 (47%), Gaps = 101/833 (12%)

Query: 2   EEEREALLEFKQSLVDEYGILSSW-------GREDDKRDCCYWRGVRCSNTTGHVIVLDL 54
           +++R+ALLEF+     E+ I +SW       G  +   DCC W GV C++ +G VI LD+
Sbjct: 36  DDQRDALLEFR----GEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDI 91

Query: 55  QVLVHSEPLKGTISPSLLKLYHLRHLDLSE------------------------NDFSGS 90
                +  LK   + SL KL +LRHLDL+                         N F G 
Sbjct: 92  PNTFLNNYLK--TNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVG- 148

Query: 91  RIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLP 150
            IP  IG+LN+LR+L L++    G IPS LGNLSRL  L+L + N        R++ K+P
Sbjct: 149 EIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLEL-FSN--------RLVGKIP 199

Query: 151 -------SLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISS 203
                   LR L+L   +L   IPS L +L    S+L  L L  N L   +   + N+  
Sbjct: 200 DSIGDLKQLRNLSLASNNLIGEIPSSLGNL----SNLVHLVLTHNQLVGEVPASIGNLI- 254

Query: 204 KLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKL 263
           +L V+  ++N L G++   F  +  L    L  N     F             +S  + L
Sbjct: 255 ELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFD----------MSIFHNL 304

Query: 264 DALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT--LKFSHDWIPPFQLIIILLGSCQ 321
           +   +S NS +G   +S+   + +L++++L +N FT  ++F++      +L  ++LG  +
Sbjct: 305 EYFDVSYNSFSGPFPKSLLL-IPSLESIYLQENQFTGPIEFANT-SSSTKLQDLILGRNR 362

Query: 322 MGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLR 381
           +    P+ +     +E LDIS    +  +P     L + +   +LS N+++G++P    R
Sbjct: 363 LHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVN-LLHLDLSKNNLEGEVPACLWR 421

Query: 382 FDPFSSSIDISSNYFEGLIPPLPSNASV--LNLSRNKFSESISFL-CSINGHKLEFLDLS 438
            +    ++ +S N F          A +  L+L+ N F   I ++ C ++   L FLDLS
Sbjct: 422 LN----TMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSS--LGFLDLS 475

Query: 439 NNILSGRLPDCWMQFD-RLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF 497
           NN+ SG +P C   F   +  L+L +N FSG +P        + +L + +N L G+ P  
Sbjct: 476 NNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKS 535

Query: 498 FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSY--IQI 555
             +C  L L+++  N +    P+W+ E LP L VL+L+SNKF+G +  +   + +  ++I
Sbjct: 536 LINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRI 594

Query: 556 LDLSLNNISGIIPKC-LNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKG 614
           +D+S NN SG +P    +N+  M   +       + +        + +SY   + +  KG
Sbjct: 595 IDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEF------WRYADSYYHEMEMVNKG 648

Query: 615 SQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSL 674
               +       + +DFS NK++G IPE +  L  L  LNLS N  T  I   +  L  L
Sbjct: 649 VDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKL 708

Query: 675 DFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCG 734
           + LD+S+N+  G IP  L  LS LS MN S+N L G +P GTQ Q    S +  NP L G
Sbjct: 709 ETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG 768

Query: 735 LPLRNKCPDEDSAASPERDDANTPEGEDQLITF-----GFYVSVILGFFIGFW 782
             L + C D  +     +   +  E E+ +  +      +   V+ G  IG +
Sbjct: 769 --LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCGLVIGHF 819

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  251 bits (642), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 244/783 (31%), Positives = 367/783 (46%), Gaps = 76/783 (9%)

Query: 2   EEEREALLEFKQSLV-DEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHS 60
           E E EAL  FK  +  D  G+LS W      R C  W G+ C ++TGHV+ + L      
Sbjct: 28  EPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHC-NWTGITC-DSTGHVVSVSLL----E 81

Query: 61  EPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQL 120
           + L+G +SP++  L +L+ LDL+ N F+G +IP  IG L +L  L L    F G IPS +
Sbjct: 82  KQLEGVLSPAIANLTYLQVLDLTSNSFTG-KIPAEIGKLTELNQLILYLNYFSGSIPSGI 140

Query: 121 GNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPS---DLLHLNFST 177
             L  + YLDL   N   S D    I K  SL  +  ++ +L   IP    DL+HL    
Sbjct: 141 WELKNIFYLDLR--NNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFV 198

Query: 178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN 237
           ++        N L+ SI P      + L  LDL  N L G +   F  +++L++L L  N
Sbjct: 199 AA-------GNHLTGSI-PVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTEN 250

Query: 238 --------------------------------------ELEELFLGKNRLNGTINQWLSR 259
                                                 +L+ L + KN+L  +I   L R
Sbjct: 251 LLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFR 310

Query: 260 MYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGS 319
           + +L  L LS N L G ++E +   L +L+ L L  N+FT +F         L ++ +G 
Sbjct: 311 LTQLTHLGLSENHLVGPISEEI-GFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGF 369

Query: 320 CQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLS 379
             +    P  L     +  L   D  ++  +P    + +  +   +LS+N + G++P   
Sbjct: 370 NNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTG-LKLLDLSHNQMTGEIPRGF 428

Query: 380 LRFDPFSSSIDISSNYFEGLIPPL---PSNASVLNLSRNKFSESISFLCSINGHKLEFLD 436
            R +   + I I  N+F G IP      SN   L+++ N  + ++  L      KL  L 
Sbjct: 429 GRMN--LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIG-KLQKLRILQ 485

Query: 437 LSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPS 496
           +S N L+G +P        L +L L +N F+G+IP+ M  L  +Q L +Y+N L G +P 
Sbjct: 486 VSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPE 545

Query: 497 FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQIL 556
                  L ++DL  N  SG+IP    + L  L  LSL+ NKF+G+IP  +  LS +   
Sbjct: 546 EMFDMKLLSVLDLSNNKFSGQIPALFSK-LESLTYLSLQGNKFNGSIPASLKSLSLLNTF 604

Query: 557 DLSLNNISGIIP-KCLNNFTGMA-QKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKG 614
           D+S N ++G IP + L +   M    + SN  +T     E   +E ++  +D     + G
Sbjct: 605 DISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQE-IDLSNNLFSG 663

Query: 615 SQHEYRSTLGLVKILDFSMNKLSGTIPEEI---MDLVGLVALNLSRNNLTGQITPKIDQL 671
           S          V  LDFS N LSG IP+E+   MD++  ++LNLSRN+ +G+I      +
Sbjct: 664 SIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMI--ISLNLSRNSFSGEIPQSFGNM 721

Query: 672 KSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPE 731
             L  LDLS N   G IP SL  LS L  + L+ NNL G +P     ++ NAS   GN +
Sbjct: 722 THLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTD 781

Query: 732 LCG 734
           LCG
Sbjct: 782 LCG 784

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  229 bits (584), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 234/729 (32%), Positives = 347/729 (47%), Gaps = 65/729 (8%)

Query: 6   EALLEFKQSLV---DEYGILSSWGREDDKRDCCYWRGVRCSNTT-GHVIVLDLQVLVHSE 61
           + LLE K+SLV    E   L  W    D  + C W GV C NT    VI L+L  L    
Sbjct: 28  QTLLEVKKSLVTNPQEDDPLRQW--NSDNINYCSWTGVTCDNTGLFRVIALNLTGL---- 81

Query: 62  PLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLG 121
            L G+ISP   +  +L HLDLS N+  G  IP  + +L  L  L L S +  G IPSQLG
Sbjct: 82  GLTGSISPWFGRFDNLIHLDLSSNNLVGP-IPTALSNLTSLESLFLFSNQLTGEIPSQLG 140

Query: 122 NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLG 181
           +L  ++ L +    L    D    +  L +L+ L L  C L   IPS L  L      + 
Sbjct: 141 SLVNIRSLRIGDNEL--VGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRL----VRVQ 194

Query: 182 ALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEE 241
           +L L +N L   I   L N S  L V     N+L G++     R+            LE 
Sbjct: 195 SLILQDNYLEGPIPAELGNCSD-LTVFTAAENMLNGTIPAELGRL----------ENLEI 243

Query: 242 LFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLK 301
           L L  N L G I   L  M +L  LSL  N L G++ +S+ ++L NL+ L L  N+ T +
Sbjct: 244 LNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSL-ADLGNLQTLDLSANNLTGE 302

Query: 302 FSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQN-QIEVLDISDAGISDTVPDWFWDLSHT 360
              ++    QL+ ++L +  +    PK + + N  +E L +S   +S  +P        +
Sbjct: 303 IPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSK-CQS 361

Query: 361 IADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVL-------NLS 413
           +   +LSNN + G +P         +  + + +N  EG + P  SN + L       N  
Sbjct: 362 LKQLDLSNNSLAGSIPEALFELVELTD-LYLHNNTLEGTLSPSISNLTNLQWLVLYHNNL 420

Query: 414 RNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKS 473
             K  + IS L      KLE L L  N  SG +P        L ++ +  N F G+IP S
Sbjct: 421 EGKLPKEISAL-----RKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPS 475

Query: 474 MGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIG--EGLPKLVV 531
           +G L  +  L L  N L+G LP+   +C QL ++DL  N LSG IP+  G  +GL +L+ 
Sbjct: 476 IGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLM- 534

Query: 532 LSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGII-PKCLNNFTGMAQKSSSNLA--IT 588
             L +N   GN+P  +  L  +  ++LS N ++G I P C          SSS L+  +T
Sbjct: 535 --LYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLC---------GSSSYLSFDVT 583

Query: 589 SNYTFERQGIEFLESY-VDNVVLTWKGSQHEYRSTLGLVK---ILDFSMNKLSGTIPEEI 644
           +N   +   +E   S  +D + L       +   TLG ++   +LD S N L+GTIP ++
Sbjct: 584 NNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQL 643

Query: 645 MDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS 704
           +    L  ++L+ N L+G I P + +L  L  L LS NQFV  +P+ L   ++L V++L 
Sbjct: 644 VLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLD 703

Query: 705 YNNLSGKIP 713
            N+L+G IP
Sbjct: 704 GNSLNGSIP 712

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  226 bits (576), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 236/741 (31%), Positives = 338/741 (45%), Gaps = 106/741 (14%)

Query: 63  LKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGN 122
           L GTI  +   L +L+ L L+    +G  IP   G L +L+ L L   E EGPIP+++GN
Sbjct: 156 LNGTIPETFGNLVNLQMLALASCRLTG-LIPSRFGRLVQLQTLILQDNELEGPIPAEIGN 214

Query: 123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182
            + L     ++  LN S      +++L +L+TLNL        IPS L  L     S+  
Sbjct: 215 CTSLALFAAAFNRLNGSLP--AELNRLKNLQTLNLGDNSFSGEIPSQLGDL----VSIQY 268

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNEL--- 239
           L L  N L   I   L  +++ L  LDL SN L G + E F RM  L  L L  N L   
Sbjct: 269 LNLIGNQLQGLIPKRLTELAN-LQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGS 327

Query: 240 ------------EELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSN 287
                       ++LFL + +L+G I   +S    L  L LS N+LTG + +S+F +L  
Sbjct: 328 LPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLF-QLVE 386

Query: 288 LKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGIS 347
           L  L+L++NS     S        L    L    +    PK +    ++E++ + +   S
Sbjct: 387 LTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFS 446

Query: 348 DTVP------------DWFWD-LSHTI----------ADFNLSNNHIKGKLPNLSLRFDP 384
             +P            DW+ + LS  I             +L  N + G +P  SL    
Sbjct: 447 GEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIP-ASLGNCH 505

Query: 385 FSSSIDISSNYFEGLIPP---------------------LP------SNASVLNLSRNKF 417
             + ID++ N   G IP                      LP       N + +N S NKF
Sbjct: 506 QMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKF 565

Query: 418 SESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFL 477
           + SIS LC  + + L F D++ N   G +P    +   L  L L  N F+G+IP++ G +
Sbjct: 566 NGSISPLCGSSSY-LSF-DVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKI 623

Query: 478 HSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537
             +  L +  NSL G +P     C +L  +DL  N LSG IPTW+G+ LP L  L L SN
Sbjct: 624 SELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK-LPLLGELKLSSN 682

Query: 538 KFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQG 597
           KF G++P ++  L+ I  L L  N+++G IP+ + N   +   ++ NL        E Q 
Sbjct: 683 KFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQAL---NALNLE-------ENQL 732

Query: 598 IEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGL-VALNLS 656
              L S +  +   ++               L  S N L+G IP EI  L  L  AL+LS
Sbjct: 733 SGPLPSTIGKLSKLFE---------------LRLSRNALTGEIPVEIGQLQDLQSALDLS 777

Query: 657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT 716
            NN TG+I   I  L  L+ LDLS NQ VG +P  +  +  L  +NLSYNNL GK  L  
Sbjct: 778 YNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGK--LKK 835

Query: 717 QLQSFNASVYAGNPELCGLPL 737
           Q   + A  + GN  LCG PL
Sbjct: 836 QFSRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  225 bits (574), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 236/759 (31%), Positives = 337/759 (44%), Gaps = 94/759 (12%)

Query: 4   EREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPL 63
           E + LLE K   VD    L +W   D     C W GV CSN +    VL L +   S  L
Sbjct: 30  EGQYLLEIKSKFVDAKQNLRNWNSNDSVP--CGWTGVMCSNYSSDPEVLSLNL--SSMVL 85

Query: 64  KGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNL 123
            G +SPS+  L HL+ LDLS N  SG +IP+ IG+ + L  L L++ +F+G IP ++G L
Sbjct: 86  SGKLSPSIGGLVHLKQLDLSYNGLSG-KIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKL 144

Query: 124 SRLKYLDLSYINLNKSRDWLRI-IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182
             L+ L    I  N+    L + I  L SL  L     ++   +P  + +L   TS    
Sbjct: 145 VSLENL---IIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAG 201

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE---- 238
             +   SL S I          LV+L L  N L G L +    +  L  + L  NE    
Sbjct: 202 QNMISGSLPSEI-----GGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGF 256

Query: 239 ----------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNL 288
                     LE L L KN+L G I + L  +  L+ L L  N L G +   +   LS  
Sbjct: 257 IPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREI-GNLSYA 315

Query: 289 KALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISD 348
             +   +N+ T +   +      L ++ L   Q+    P  L T   +  LD+S   ++ 
Sbjct: 316 IEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTG 375

Query: 349 TVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS--SIDISSNYFEGLIPP---L 403
            +P  F  L   +    L  N + G +P    +   +S    +D+S N+  G IP    L
Sbjct: 376 PIPLGFQYL-RGLFMLQLFQNSLSGTIPP---KLGWYSDLWVLDMSDNHLSGRIPSYLCL 431

Query: 404 PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLAN 463
            SN  +LNL  N  S +I    +     L  L L+ N L GR P    +   +  + L  
Sbjct: 432 HSNMIILNLGTNNLSGNIPTGIT-TCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQ 490

Query: 464 NFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIG 523
           N F G IP+ +G   ++Q L L +N   GELP      SQL  +++  N L+GE+P+ I 
Sbjct: 491 NRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIF 550

Query: 524 EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS 583
                L  L +  N F G +P +V  L  +++L LS NN+SG IP  L N + + +    
Sbjct: 551 N-CKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTE---- 605

Query: 584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEE 643
                                                        L    N  +G+IP E
Sbjct: 606 ---------------------------------------------LQMGGNLFNGSIPRE 620

Query: 644 IMDLVGL-VALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMN 702
           +  L GL +ALNLS N LTG+I P++  L  L+FL L+ N   G IPSS   LS L   N
Sbjct: 621 LGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYN 680

Query: 703 LSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKC 741
            SYN+L+G IPL   L++ + S + GN  LCG PL N+C
Sbjct: 681 FSYNSLTGPIPL---LRNISMSSFIGNEGLCGPPL-NQC 715

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  224 bits (571), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 239/768 (31%), Positives = 361/768 (47%), Gaps = 63/768 (8%)

Query: 2   EEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSE 61
           + E +AL  FK +L D  G L+SW        C  WRGV C+N   H +    ++ +   
Sbjct: 26  QAEIDALTAFKLNLHDPLGALTSWDPSTPAAPC-DWRGVGCTN---HRVT---EIRLPRL 78

Query: 62  PLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLG 121
            L G IS  +  L  LR L L  N F+G+ IP  +    +L  + L      G +P  + 
Sbjct: 79  QLSGRISDRISGLRMLRKLSLRSNSFNGT-IPTSLAYCTRLLSVFLQYNSLSGKLPPAMR 137

Query: 122 NLSRLKYLDLSYINLNKSRDWLRIIDKLP-SLRTLNLEHCHLPPIIPSDLLHLNFSTSSL 180
           NL+ L+       N+  +R    I   LP SL+ L++        IPS L +L       
Sbjct: 138 NLTSLEVF-----NVAGNRLSGEIPVGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLN 192

Query: 181 GALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELE 240
            +     N L+  I   L N+ S L  L LD NLLQG+L        SL  ++L  +E  
Sbjct: 193 LSY----NQLTGEIPASLGNLQS-LQYLWLDFNLLQGTLPSAISNCSSL--VHLSASE-- 243

Query: 241 ELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTL 300
                 N + G I      + KL+ LSLS N+ +G V  S+F   S L  + L  N+F+ 
Sbjct: 244 ------NEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTS-LTIVQLGFNAFS- 295

Query: 301 KFSHDWIPP-------FQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDW 353
               D + P         L ++ L   ++   FP WL     ++ LD+S    S  +P  
Sbjct: 296 ----DIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPD 351

Query: 354 FWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPL---PSNASVL 410
             +L   + +  L+NN + G++P + ++       +D   N  +G IP          VL
Sbjct: 352 IGNLKR-LEELKLANNSLTGEIP-VEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVL 409

Query: 411 NLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKI 470
           +L RN FS  +     +N  +LE L+L  N L+G  P   M    L+ L L+ N FSG +
Sbjct: 410 SLGRNSFSGYVPS-SMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAV 468

Query: 471 PKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLV 530
           P S+  L ++  L+L  N   GE+P+   +  +L  +DL K  +SGE+P  +  GLP + 
Sbjct: 469 PVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVEL-SGLPNVQ 527

Query: 531 VLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSN 590
           V++L+ N F G +P     L  ++ ++LS N+ SG IP+       +   S S+  I+ +
Sbjct: 528 VIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGS 587

Query: 591 YTFER---QGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDL 647
              E      +E LE   + ++    G      S L  +K+LD   N LSG IP EI   
Sbjct: 588 IPPEIGNCSALEVLELRSNRLM----GHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQS 643

Query: 648 VGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL-SRLSVMNLSYN 706
             L +L+L  N+L+G I      L +L  +DLS N   G IP+SL  + S L   N+S N
Sbjct: 644 SSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSN 703

Query: 707 NLSGKIP--LGTQLQSFNASVYAGNPELCGLPLRNKCPDEDSAASPER 752
           NL G+IP  LG+++   N S ++GN ELCG PL  +C  E S A  ++
Sbjct: 704 NLKGEIPASLGSRIN--NTSEFSGNTELCGKPLNRRC--ESSTAEGKK 747

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  221 bits (563), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 238/797 (29%), Positives = 368/797 (46%), Gaps = 71/797 (8%)

Query: 1   MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHS 60
           + EE   LLEFK  L D  G L+SW + D   + C W G+ C++    V  +DL  +   
Sbjct: 24  LNEEGRVLLEFKAFLNDSNGYLASWNQLDS--NPCNWTGIACTHLR-TVTSVDLNGM--- 77

Query: 61  EPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQL 120
             L GT+SP + KL+ LR L++S N  SG  IP+ +     L  L L +  F G IP QL
Sbjct: 78  -NLSGTLSPLICKLHGLRKLNVSTNFISGP-IPQDLSLCRSLEVLDLCTNRFHGVIPIQL 135

Query: 121 GNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSL 180
             +  LK L L    L  S    R I  L SL+ L +   +L  +IP  +  L      L
Sbjct: 136 TMIITLKKLYLCENYLFGSIP--RQIGNLSSLQELVIYSNNLTGVIPPSMAKLR----QL 189

Query: 181 GALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELE 240
             +    N  S  I P   +    L VL L  NLL+GSL +  +++            L 
Sbjct: 190 RIIRAGRNGFSGVI-PSEISGCESLKVLGLAENLLEGSLPKQLEKL----------QNLT 238

Query: 241 ELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTL 300
           +L L +NRL+G I   +  + +L+ L+L  N  TG +   +  +L+ +K L+L  N  T 
Sbjct: 239 DLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREI-GKLTKMKRLYLYTNQLTG 297

Query: 301 KFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHT 360
           +   +         I     Q+    PK       +++L + +  +   +P    +L+  
Sbjct: 298 EIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELT-L 356

Query: 361 IADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSES 420
           +   +LS N + G +P   L+F P+   + +  N  EG IPPL                 
Sbjct: 357 LEKLDLSINRLNGTIPQ-ELQFLPYLVDLQLFDNQLEGKIPPL----------------- 398

Query: 421 ISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSI 480
           I F  + +      LD+S N LSG +P  + +F  L +LSL +N  SG IP+ +    S+
Sbjct: 399 IGFYSNFS-----VLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSL 453

Query: 481 QTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH 540
             L L +N L G LP    +   L  ++L +N LSG I   +G+ L  L  L L +N F 
Sbjct: 454 TKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGK-LKNLERLRLANNNFT 512

Query: 541 GNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEF 600
           G IP ++  L+ I   ++S N ++G IPK L +   + +   S    +     E   + +
Sbjct: 513 GEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVY 572

Query: 601 LE--SYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGL-VALNLSR 657
           LE     DN  LT +   H +     L++ L    N LS  IP E+  L  L ++LN+S 
Sbjct: 573 LEILRLSDNR-LTGE-IPHSFGDLTRLME-LQLGGNLLSENIPVELGKLTSLQISLNISH 629

Query: 658 NNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQ 717
           NNL+G I   +  L+ L+ L L+ N+  G IP+S+  L  L + N+S NNL G +P    
Sbjct: 630 NNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAV 689

Query: 718 LQSFNASVYAGNPELCGLPLRNKC----PDEDSAASPERDDANTPEGEDQLITFGFYVSV 773
            Q  ++S +AGN  LC    R+ C    P  DS  +   + +       +++T      +
Sbjct: 690 FQRMDSSNFAGNHGLCN-SQRSHCQPLVPHSDSKLNWLINGSQ----RQKILTI---TCI 741

Query: 774 ILG--FFIGFWGVCGTL 788
           ++G  F I F G+C T+
Sbjct: 742 VIGSVFLITFLGLCWTI 758

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  209 bits (532), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 242/827 (29%), Positives = 361/827 (43%), Gaps = 125/827 (15%)

Query: 4   EREALLEFKQSLV--DEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSE 61
           E   LL FKQ+ V  D   +L +W + +  R  C WRGV CS+  G ++ LDL+    + 
Sbjct: 34  ETALLLAFKQNSVKSDPNNVLGNW-KYESGRGSCSWRGVSCSDD-GRIVGLDLR----NS 87

Query: 62  PLKGTIS-------PSLLKLY-----------------HLRHLDLSENDFSGSRIPEFIG 97
            L GT++       P+L  LY                 +L+ LDLS N  S   + +++ 
Sbjct: 88  GLTGTLNLVNLTALPNLQNLYLQGNYFSSGGDSSGSDCYLQVLDLSSNSISDYSMVDYVF 147

Query: 98  S-LNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLN 156
           S  + L  +++S+ +  G +     +L  L  +DLSY  L+       I D   SL+ L+
Sbjct: 148 SKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTVDLSYNILSDKIPESFISDFPASLKYLD 207

Query: 157 LEHCHLPPIIPSDLLHLNFS-TSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLL 215
           L H +L      D   L+F    +L    L +N+LS   +P        L  L++  N L
Sbjct: 208 LTHNNLS----GDFSDLSFGICGNLTFFSLSQNNLSGDKFPITLPNCKFLETLNISRNNL 263

Query: 216 QGSLLEPFDRMVSLRTLYLG-FNELEELFLGKNRLNGTINQWLSRMYK-LDALSLSGNSL 273
            G +  P          Y G F  L++L L  NRL+G I   LS + K L  L LSGN+ 
Sbjct: 264 AGKI--PNGE-------YWGSFQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTF 314

Query: 274 TGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIIL-LGSCQMGPHFPKWLQT 332
           +G +  S F+    L+ L+L +N  +  F +  +     I  L +    +    P  L  
Sbjct: 315 SGEL-PSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTN 373

Query: 333 QNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDIS 392
            + + VLD+S  G +  VP  F                        SL+  P    I I+
Sbjct: 374 CSNLRVLDLSSNGFTGNVPSGF-----------------------CSLQSSPVLEKILIA 410

Query: 393 SNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLP-DCWM 451
           +NY  G +P        + L + K               L+ +DLS N L+G +P + WM
Sbjct: 411 NNYLSGTVP--------MELGKCK--------------SLKTIDLSFNELTGPIPKEIWM 448

Query: 452 QFDRLAVLSLANNFFSGKIPKSMGFLH-SIQTLSLYNNSLIGELPSFFKSCSQLILMDLG 510
               L+ L +  N  +G IP+ +     +++TL L NN L G +P     C+ +I + L 
Sbjct: 449 -LPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLS 507

Query: 511 KNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKC 570
            N L+G+IP+ IG  L KL +L L +N   GN+P Q+     +  LDL+ NN++G +P  
Sbjct: 508 SNRLTGKIPSGIGN-LSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGE 566

Query: 571 LNNFTGMAQKSS---SNLAITSN------------YTFERQGIEFLES--YVDNVVLT-- 611
           L +  G+    S      A   N              FE    E LE    V +   T  
Sbjct: 567 LASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRI 626

Query: 612 WKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQL 671
           + G      S  G +   D S N +SG IP    ++  L  LNL  N +TG I      L
Sbjct: 627 YSGMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGL 686

Query: 672 KSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPE 731
           K++  LDLS N   G +P SL  LS LS +++S NNL+G IP G QL +F  S YA N  
Sbjct: 687 KAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSG 746

Query: 732 LCGLPLRNKCPDEDSAASPERDDANTPEGEDQLITFGFYVSVILGFF 778
           LCG+PLR         ++P R   +    + Q +       +   F 
Sbjct: 747 LCGVPLR------PCGSAPRRPITSRIHAKKQTVATAVIAGIAFSFM 787

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  206 bits (525), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 223/755 (29%), Positives = 338/755 (44%), Gaps = 102/755 (13%)

Query: 48  HVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSL 107
           H+  LDL        L G +   L +L  L +LDLS+N FSGS  P F  SL  L  L +
Sbjct: 114 HLQTLDLS----GNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDV 169

Query: 108 SSAEFEGPIPSQLGNLSRLKYLDLSYINLNK-SRDWLRIIDKLPSLRTLNLEHCHLPPII 166
           S+    G IP ++G LS L  L   Y+ LN  S      I  +  L+      C     +
Sbjct: 170 SNNSLSGEIPPEIGKLSNLSNL---YMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPL 226

Query: 167 PSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRM 226
           P ++  L      L  L L  N L  SI P  F     L +L+L S  L G +       
Sbjct: 227 PKEISKLKH----LAKLDLSYNPLKCSI-PKSFGELHNLSILNLVSAELIGLIPPELGNC 281

Query: 227 VSLRTLYLGFN--------ELEELFL-----GKNRLNGTINQWLSRMYKLDALSLSGNSL 273
            SL++L L FN        EL E+ L      +N+L+G++  W+ +   LD+L L+ N  
Sbjct: 282 KSLKSLMLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRF 341

Query: 274 TGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQ 333
           +G +   +  +   LK L L  N                  +L GS       P+ L   
Sbjct: 342 SGEIPHEI-EDCPMLKHLSLASN------------------LLSGS------IPRELCGS 376

Query: 334 NQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISS 393
             +E +D+S   +S T+ + F D   ++ +  L+NN I G +P    +    +  +D+ S
Sbjct: 377 GSLEAIDLSGNLLSGTIEEVF-DGCSSLGELLLTNNQINGSIPEDLWKLPLMA--LDLDS 433

Query: 394 NYFEGLIPP---LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCW 450
           N F G IP      +N      S N+    +      N   L+ L LS+N L+G +P   
Sbjct: 434 NNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIG-NAASLKRLVLSDNQLTGEIPREI 492

Query: 451 MQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLI----- 505
            +   L+VL+L  N F GKIP  +G   S+ TL L +N+L G++P    + +QL      
Sbjct: 493 GKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLS 552

Query: 506 -------------------------------LMDLGKNGLSGEIPTWIGEGLPKLVVLSL 534
                                          + DL  N LSG IP  +GE L  LV +SL
Sbjct: 553 YNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECL-VLVEISL 611

Query: 535 KSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFE 594
            +N   G IP  + +L+ + ILDLS N ++G IPK + N   +   + +N  +  +    
Sbjct: 612 SNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIP-- 669

Query: 595 RQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKIL---DFSMNKLSGTIPEEIMDLVGLV 651
            +    L S V  + LT         ++LG +K L   D S N LSG +  E+  +  LV
Sbjct: 670 -ESFGLLGSLV-KLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLV 727

Query: 652 ALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGK 711
            L + +N  TG+I  ++  L  L++LD+S+N   G IP+ +C L  L  +NL+ NNL G+
Sbjct: 728 GLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGE 787

Query: 712 IPLGTQLQSFNASVYAGNPELCGLPLRNKCPDEDS 746
           +P     Q  + ++ +GN ELCG  + + C  E +
Sbjct: 788 VPSDGVCQDPSKALLSGNKELCGRVVGSDCKIEGT 822

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  205 bits (522), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 214/740 (28%), Positives = 314/740 (42%), Gaps = 153/740 (20%)

Query: 2   EEEREALLEFKQSLVD--EYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVH 59
           E + +ALLEFK  + +  +  +L+SW   +     C W GV C      VI L+L     
Sbjct: 29  ETDMQALLEFKSQVSENNKREVLASW---NHSSPFCNWIGVTCGRRRERVISLNLGGF-- 83

Query: 60  SEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQ 119
              L G ISPS+  L  LR L+L++N F GS IP+ +G L +L+YL++S    EG IPS 
Sbjct: 84  --KLTGVISPSIGNLSFLRLLNLADNSF-GSTIPQKVGRLFRLQYLNMSYNLLEGRIPSS 140

Query: 120 LGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSS 179
           L N SRL  +DLS                            HL   +PS+          
Sbjct: 141 LSNCSRLSTVDLS--------------------------SNHLGHGVPSE---------- 164

Query: 180 LGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNEL 239
           LG+L                   SKL +LDL  N L G+       + SL+ L   +N++
Sbjct: 165 LGSL-------------------SKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQM 205

Query: 240 EELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
                      G I   ++R+ ++    ++ NS +G    ++++ +S+L++L L DNSF+
Sbjct: 206 R----------GEIPDEVARLTQMVFFQIALNSFSGGFPPALYN-ISSLESLSLADNSFS 254

Query: 300 LKFSHDW-IPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLS 358
                D+      L  +LLG+ Q     PK L   + +E  DIS   +S ++P  F    
Sbjct: 255 GNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSF---- 310

Query: 359 HTIADFNLSNNHIKGKLPN---LSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRN 415
                         GKL N   L +R +   ++      +   +                
Sbjct: 311 --------------GKLRNLWWLGIRNNSLGNNSSSGLEFIGAV---------------- 340

Query: 416 KFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFD-RLAVLSLANNFFSGKIPKSM 474
                       N  +LE+LD+  N L G LP         L  L L  N  SG IP  +
Sbjct: 341 -----------ANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDI 389

Query: 475 GFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSL 534
           G L S+Q LSL  N L GELP  F     L ++DL  N +SGEIP++ G  + +L  L L
Sbjct: 390 GNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGN-MTRLQKLHL 448

Query: 535 KSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFE 594
            SN FHG IP  + +  Y+  L +  N ++G IP+ +     +A    SN  +T ++  E
Sbjct: 449 NSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEE 508

Query: 595 RQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALN 654
              +E L                           L  S NKLSG +P+ I   + +  L 
Sbjct: 509 VGKLELLVG-------------------------LGASYNKLSGKMPQAIGGCLSMEFLF 543

Query: 655 LSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714
           +  N+  G I P I +L SL  +D S N   G IP  L  L  L  +NLS N   G++P 
Sbjct: 544 MQGNSFDGAI-PDISRLVSLKNVDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPT 602

Query: 715 GTQLQSFNASVYAGNPELCG 734
               ++  A    GN  +CG
Sbjct: 603 TGVFRNATAVSVFGNTNICG 622

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	789
359489995	867	PREDICTED: probable LRR receptor-like se	0.953	0.867	0.490	0.0
224105895	963	predicted protein [Populus trichocarpa]	0.994	0.815	0.459	0.0
225464712	1021	PREDICTED: receptor-like protein 12-like	0.998	0.771	0.432	0.0
224115848	884	predicted protein [Populus trichocarpa]	0.980	0.875	0.441	1e-176
359490572	975	PREDICTED: probable LRR receptor-like se	0.988	0.8	0.429	1e-175
359490164	1198	PREDICTED: LRR receptor-like serine/thre	0.912	0.601	0.475	1e-170
359490166	1265	PREDICTED: LRR receptor-like serine/thre	0.953	0.594	0.439	1e-169
225466147	1024	PREDICTED: LRR receptor-like serine/thre	0.896	0.690	0.495	1e-167
225470187	870	PREDICTED: receptor-like protein kinase	0.967	0.877	0.431	1e-166
359490426	1436	PREDICTED: LRR receptor-like serine/thre	0.968	0.532	0.429	1e-160

>gi|359489995|ref|XP_003634011.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/861 (49%), Positives = 535/861 (62%), Gaps = 109/861 (12%)

Query: 1   MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQV---- 56
           +E ER+ALL FK  LVD+YGILSSW    D RDCC WRGVRCSN +GH+++L L      
Sbjct: 34  VERERQALLRFKHGLVDDYGILSSW----DTRDCCQWRGVRCSNQSGHIVMLHLPAPPTE 89

Query: 57  ----LVHS-EPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAE 111
                VH  + L+G ISPSLL+L HL HLDLS NDF  S IP F+ SL+K++YL+LS A 
Sbjct: 90  FEDEYVHKFQSLRGEISPSLLELEHLTHLDLSCNDFERSHIPPFVASLSKIQYLNLSYAN 149

Query: 112 FEGPIPSQ-------------------------LGNLSRLKYLDLSYINLN--------- 137
           F G +PSQ                         L +L+++++L LSY N           
Sbjct: 150 FTGRLPSQLGNLSNLLSLDLSSNDFEGRPIPPFLASLTKIQHLSLSYANFTGRLPSHFGN 209

Query: 138 -----------------KSRDWLRIIDKLPSLRTLNLEHC-------HLPPIIPSDLLHL 173
                             + +WL     L SLR L+L++        +LPP+       +
Sbjct: 210 LSNLLSLDLSYNYDLNCGNLEWL---SHLSSLRHLDLKYVNLSKAIHYLPPLTTPSFSPV 266

Query: 174 NFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLY 233
           N S++ L  L L +N   SSIYPWLFN ++ L       N   GS  +           +
Sbjct: 267 N-SSAPLAFLDLSDNDYDSSIYPWLFNFTTTLT-----DNQFAGSFPD-----------F 309

Query: 234 LGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHL 293
           +GF+ L+EL L  N++NGT+ + + ++ KL+AL +  NSL GV++E+    LS L  L L
Sbjct: 310 IGFSSLKELELDHNQINGTLPKSIGQLTKLEALIIGSNSLQGVISEAHLLHLSRLSYLDL 369

Query: 294 DDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDW 353
             NSF    S +W+PPFQLI + L SCQ+GP FP WL+TQ Q++ LDIS + ISD +P W
Sbjct: 370 SSNSFNFNMSSEWVPPFQLIFLQLTSCQLGPRFPSWLRTQKQLQSLDISTSDISDVIPHW 429

Query: 354 FWDLSHTIADFNLSNNHIKGKLPNLSLRFD-PFSSSIDISSNYFEGLIPPLPSNASVLNL 412
           FW+L+  I  FN+SNN I G LPNLS +FD P    ID+SSN+ EG IP LPS  S L+L
Sbjct: 430 FWNLTSLIYFFNISNNQITGTLPNLSSKFDQPL--YIDMSSNHLEGSIPQLPSGLSWLDL 487

Query: 413 SRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPK 472
           S NKFS SI+ LC++    L +LDLSNN+LSG LP+CW Q+  L VL+L NN FS KIP+
Sbjct: 488 SNNKFSGSITLLCTVANSYLAYLDLSNNLLSGELPNCWPQWKSLTVLNLENNQFSRKIPE 547

Query: 473 SMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVL 532
           S G L  IQTL L N +LIGELPS  K C  L  +DL KN LSGEIP WIG  LP L+VL
Sbjct: 548 SFGSLQLIQTLHLRNKNLIGELPSSLKKCKSLSFIDLAKNRLSGEIPPWIGGNLPNLMVL 607

Query: 533 SLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYT 592
           +L+SNKF G+I  +VCQL  IQILDLS NN+SG IP+CL+NFT M +K S  L IT N++
Sbjct: 608 NLQSNKFSGSISPEVCQLKKIQILDLSDNNMSGTIPRCLSNFTAMTKKES--LTITYNFS 665

Query: 593 FERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVA 652
              Q      SYVD   + WKG + E+++TLGLVK +D S NKL+G IP+E+ DL+ LV+
Sbjct: 666 MSYQHW----SYVDKEFVKWKGREFEFKNTLGLVKSIDLSSNKLTGEIPKEVTDLLELVS 721

Query: 653 LNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKI 712
           LN SRNNLTG I   I QLKSLD LDLSQNQ +G IPSSL ++ RLS ++LS NNLSG I
Sbjct: 722 LNFSRNNLTGLIPITIGQLKSLDILDLSQNQLIGEIPSSLSEIDRLSTLDLSNNNLSGMI 781

Query: 713 PLGTQLQSFNASVYAGNPELCGLPLRNKCPDEDSAASP----ERDDANTPEGEDQLITFG 768
           P GTQLQSFN   Y GNP LCG PL  KCP + +  +P    + DD    +G D      
Sbjct: 782 PQGTQLQSFNTFSYEGNPTLCGPPLLKKCPRDKAEGAPNVYSDEDDIQQ-DGND----MW 836

Query: 769 FYVSVILGFFIGFWGVCGTLL 789
           FYVS+ LGF +GFWGVCGTLL
Sbjct: 837 FYVSIALGFIVGFWGVCGTLL 857

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/891 (45%), Positives = 526/891 (59%), Gaps = 106/891 (11%)

Query: 1   MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQ----V 56
           +E ER+ALL+FK+ ++DE G+LSSWG E++KRDCC WRGV C N TGHV  L+L      
Sbjct: 33  IERERQALLKFKEDIIDEDGVLSSWGGEEEKRDCCKWRGVGCDNITGHVTSLNLHSSPLY 92

Query: 57  LVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPI 116
             H  PL G +S SLL+L HL +LDLS N+   S I +FIGSL+ LRYL+LS   F   I
Sbjct: 93  EHHFTPLTGKVSNSLLELQHLNYLDLSLNNLDES-IMDFIGSLSSLRYLNLSYNLFTVTI 151

Query: 117 PSQLGNLSRLKYLDLSY-------------------------INLNKSRDWLRIIDKLPS 151
           P  L NLSRL+ LDLSY                          +L+K  DWL+++  LP 
Sbjct: 152 PYHLRNLSRLQSLDLSYSFDASVENLGWLSHLSSLEHLDLSGSDLSKVNDWLQVVTNLPR 211

Query: 152 LRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLD 211
           L+ L L  C L  IIPS L  +N S+  L  L+L  N+LSS+IYPWL+N+S+ L  LDL 
Sbjct: 212 LKDLRLNQCSLTDIIPSPLSFMN-SSKFLAVLHLSNNNLSSAIYPWLYNLSNSLADLDLS 270

Query: 212 SNLLQGSLLEPFDRMVSLRTLYLGFNELEE------------------------------ 241
            N LQG + + F +M +L  L L  N+LE                               
Sbjct: 271 GNQLQGLVPDGFRKMSALTNLVLSRNQLEGGIPRSLGEMCSLHTLDLCHNNLTGELSDLT 330

Query: 242 -------------LFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESV------- 281
                        L L +N+L G++   ++R   L  L +S N L G + ES+       
Sbjct: 331 RNLYGRTESSLEILRLCQNQLRGSLTD-IARFSSLRELDISNNQLNGSIPESIGFLSKLD 389

Query: 282 -----------------FSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGP 324
                            FS LS LK L L  NS  L+F  DW P FQL  I L SC +GP
Sbjct: 390 YFDVSFNSLQGLVSGGHFSNLSKLKHLDLSYNSLVLRFKSDWDPAFQLKNIHLSSCHLGP 449

Query: 325 HFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSL--RF 382
            FPKWL+TQ ++ +LDIS A ISDTVP+WFW+L   +A  N+S+N ++G LP+ S     
Sbjct: 450 CFPKWLRTQIKVRLLDISSASISDTVPNWFWNLLPKLAFLNISHNLMRGTLPDFSSVDAV 509

Query: 383 DPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNIL 442
           D      D+S N FEGL+P  P N + L LS N FS  IS +C+I G  L FLDLSNN+L
Sbjct: 510 DDTFPGFDLSFNRFEGLLPAFPFNTASLILSNNLFSGPISLICNIVGKDLSFLDLSNNLL 569

Query: 443 SGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCS 502
           +G+LP+C+M +  L VL+LANN  SG+IP S+G L S+QTLSL  NSL GELP   K+CS
Sbjct: 570 TGQLPNCFMNWSTLVVLNLANNNLSGEIPSSVGSLFSLQTLSLNKNSLYGELPMSLKNCS 629

Query: 503 QLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNN 562
            L  +DL +N LSGEIP WIGE L  L+ LSLKSN+F G+IP  +CQL+ ++ILDLS N 
Sbjct: 630 MLKFLDLSRNQLSGEIPAWIGESLSSLMFLSLKSNEFIGSIPLHLCQLTNLRILDLSQNT 689

Query: 563 ISGIIPKCLNNFTGMAQKSSSNLAITSNY-TFERQGIEFL-ESYVDNVVLTWKGSQHEYR 620
           ISG IPKCLNN T M  K  +   I + Y T  R G  F    Y++   + WKG  +EY 
Sbjct: 690 ISGAIPKCLNNLTTMVLKGEAETIIDNLYLTSMRCGAIFSGRYYINKAWVGWKGRDYEYE 749

Query: 621 STLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLS 680
             LGL++++DF+ N LSG IPEEI  L+GLVALNLSRNNLTG I   I  LKSL+ LDLS
Sbjct: 750 RYLGLLRVIDFAGNNLSGEIPEEITGLLGLVALNLSRNNLTGVIPQTIGLLKSLESLDLS 809

Query: 681 QNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNK 740
            NQF G IP ++  L+ LS +N+SYNNLSG+IP  TQLQSF+AS + GNP LCGLP+ NK
Sbjct: 810 GNQFSGAIPVTMGDLNFLSYLNVSYNNLSGQIPSSTQLQSFDASAFIGNPALCGLPVTNK 869

Query: 741 CPDEDSAASPERDDANTPEGEDQLITFG--FYVSVILGFFIGFWGVCGTLL 789
           C   D   +   +     + ++ +  F   F  ++ +GF + FWGV G LL
Sbjct: 870 CLGGDLPRNLVMNGV-IQDNQETVHEFSAWFCTAMGIGFSVFFWGVSGALL 919

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/949 (43%), Positives = 533/949 (56%), Gaps = 161/949 (16%)

Query: 1    MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVL--- 57
            +E+ER+ALL+FKQ LVD++GILSSWG E+D+RDCC WRGV+CSN T HVI+LDL  L   
Sbjct: 53   VEKERQALLDFKQGLVDDFGILSSWGNEEDRRDCCKWRGVQCSNRTSHVIMLDLHALPTD 112

Query: 58   -VHS-EPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGP 115
             VH  + L+G IS SLL+L HL HLDLS NDF GS +PEFIG  +KLRYL+LS A   G 
Sbjct: 113  TVHKYQSLRGRISSSLLELQHLNHLDLSLNDFQGSYVPEFIGLFSKLRYLNLSEARLAGM 172

Query: 116  IPSQLGNLSRL-------------------------KYLDLSYINLNKSRDWLRIIDKLP 150
            IPS LGNLS L                         ++LDLS +NL+K+  W  +I++LP
Sbjct: 173  IPSHLGNLSNLHFLDLSRNYGMSSETLEWLSRLSSLRHLDLSGLNLDKAIYWEHVINRLP 232

Query: 151  SLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDL 210
            SL  L L    LP II    L    S+ SL  L L  N LSSS+YPWLFN+SS LV LDL
Sbjct: 233  SLTDLLLHDSALPQIITPSALSYTNSSKSLVVLDLSWNFLSSSVYPWLFNLSSSLVHLDL 292

Query: 211  DSNLLQGSLLEPFDRMVSLRTLYLGFNELE-------------ELFLGKNRLNGTINQWL 257
              N +QG + + F  MVSL  L L FN+LE              L L  N L+G+I    
Sbjct: 293  SINQIQGLIPDTFGEMVSLEYLDLFFNQLEGEIPQSLTSTSLVHLDLSVNHLHGSIPDTF 352

Query: 258  SRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT----------LKFSHD-- 305
              M  L  L LS N L G + +S F  L +L+ + L  NS T          L  S D  
Sbjct: 353  GHMTSLSYLDLSLNQLEGGIPKS-FKNLCSLQMVMLLSNSLTAQLPEFVQNSLSCSKDTL 411

Query: 306  ------W------IPPFQLIIIL----LGSCQMGPHFPKWLQTQNQIEVLDISDAGISDT 349
                  W       P F    +L    +   ++   FP+ +   +Q+EVL+IS   +   
Sbjct: 412  EVLVLSWNQFTGSFPNFTGFSVLGHLYIDHNRLNGTFPEHIGQLSQLEVLEISGNSLHGN 471

Query: 350  V--------------------------PDW----------------------FWDLSHTI 361
            +                          P+W                      +      +
Sbjct: 472  ITEAHLSSLSKLYWLDLSSNSLALELSPEWTPPFQVGYLGLLSCKMGPNFPGWLQTQKDL 531

Query: 362  ADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLP-SNASVLNLSRNK---- 416
               ++SN+ I   +P+           + I++N   G +P L    A+V++LS N+    
Sbjct: 532  FSLDISNSSISDVIPSWFWNLTSKLIKLRIANNQIRGRVPSLRMETAAVIDLSLNRFEGP 591

Query: 417  -----------------FSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQF-DRLAV 458
                             FS SIS LC+I    L +LDLS+N+LSG LPDCW Q+ D+L +
Sbjct: 592  IPSLPSGVRVLSLSKNLFSGSISLLCTIVDGALSYLDLSDNLLSGALPDCWQQWRDQLQI 651

Query: 459  LSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEI 518
            L+LANN FSGK+P S+G L ++QTL LYNN  +GELPS   +C++L L+D+GKN  SGEI
Sbjct: 652  LNLANNNFSGKLPYSLGSLAALQTLHLYNNGFLGELPSSLMNCTKLRLVDMGKNRFSGEI 711

Query: 519  PTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMA 578
            PTWIGE L  LVVLSL+SN+FHG+I   +C L  +QILD S NNISG IP+CLNNFT MA
Sbjct: 712  PTWIGERLSDLVVLSLRSNEFHGSISSDICLLKELQILDFSRNNISGTIPRCLNNFTAMA 771

Query: 579  QK------------------SSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYR 620
            QK                    +NL IT  + +     + +  YVD+ ++ WKG + EY+
Sbjct: 772  QKMIYSVIAHDYLALSIVPRGRNNLGITPRWAYSSGSFDTIARYVDSALIPWKGGEFEYK 831

Query: 621  STLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLS 680
            + LGLV+ +D S NKLSG IP+EI  L+ L++LNLSRN+L GQI   I QLKSLD LDLS
Sbjct: 832  NILGLVRSIDLSSNKLSGEIPKEITKLMELISLNLSRNHLNGQIPSMIGQLKSLDVLDLS 891

Query: 681  QNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNK 740
            +NQ  G IPSSL Q+ RLSV++LS NNLSG+IP GTQLQ F AS Y GNPELCG PL+ K
Sbjct: 892  KNQLDGKIPSSLSQIDRLSVLDLSSNNLSGQIPSGTQLQGFEASSYMGNPELCGSPLKTK 951

Query: 741  CPDEDSAASPERDDANTPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL 789
            C ++++A +    D N  + +D      FYVS+ LGF +GFWGV GTL+
Sbjct: 952  CQEDETAQTSPTSDGNEDDLQDDEFDPWFYVSIALGFLVGFWGVWGTLV 1000

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115848|ref|XP_002332072.1| predicted protein [Populus trichocarpa] gi|222831958|gb|EEE70435.1| predicted protein [Populus trichocarpa]

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 380/860 (44%), Positives = 509/860 (59%), Gaps = 86/860 (10%)

Query: 1   MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDL-QVLVH 59
           ME E++ALL+ K  LVDE   LSSWG  DD   CC W GVRC+N TGHV  L L Q L  
Sbjct: 3   MEREKQALLKLKDDLVDENDQLSSWGTSDD---CCNWTGVRCNNRTGHVYSLQLNQQLDD 59

Query: 60  SEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQ 119
           S   KG IS  LL+L HL +LD+SE     + IP+FIGSL  L +L++S  +  G IP Q
Sbjct: 60  SMQFKGDISSPLLELKHLAYLDMSE--VRATSIPQFIGSLKHLMHLNMSFCDLTGTIPHQ 117

Query: 120 LGNLSRLKYLDLSYINLNK-------------------------SRDWLRIIDKLPSLRT 154
           LGNL+RL +LDLSY N NK                         + DW + I+ LPSL  
Sbjct: 118 LGNLTRLVFLDLSYNNFNKVESLSWLSRLPALKHLDLSTADLSGTTDWFQAINSLPSLHN 177

Query: 155 LNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNL 214
           L L  C L  +I   L   N+S +SL  + L +N+L SSI+PWL N ++ LV L L  N 
Sbjct: 178 LYLSGCGLSSVISPPLFRSNYSPASLADIDLSQNTLKSSIFPWLLNFNNSLVHLKLYDNE 237

Query: 215 LQGSLLEPFDRMVSLRTLYLGFNELE---------------------------------- 240
            QG + +    M++L +L L  N  E                                  
Sbjct: 238 FQGKIPKALGAMINLESLLLSGNHFEGEIPRALANLGRLESLDLSWNSLVGEVPDMKNLS 297

Query: 241 ---ELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNS 297
               LFL  N+LNG+  + +  +  L  L +S N + G ++E  F  L+ L  L +  N+
Sbjct: 298 FITRLFLSDNKLNGSWIENIRLLSDLAYLDISYNFMNGTISEINFLNLTELTHLDISSNA 357

Query: 298 FTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDL 357
           F    S +W PPFQL  +++ SC++GP FP+WL+TQ +I  LDIS+AGI D +   F  L
Sbjct: 358 FVFNLSLNWTPPFQLDTLIMSSCKLGPSFPQWLRTQRRISELDISNAGIEDDISSRFGKL 417

Query: 358 SHTIADFNLSNNHIKG---KLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSR 414
              +   N+S+N I G   KLP  S+  D  S+++D+SSN+  G +P LP NA++LNLS+
Sbjct: 418 PFKLNYLNISHNQITGEAHKLP--SVVGD--SATVDMSSNFLHGSLP-LPLNATILNLSK 472

Query: 415 NKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSM 474
           N FS +IS LCSI   +L +LDLS+N LSG +PDCWM    L +L+LA N FSG+IP S+
Sbjct: 473 NLFSGTISNLCSIACERLFYLDLSDNCLSGEIPDCWMTCKELNILNLAGNNFSGRIPASL 532

Query: 475 GFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSL 534
           G L  IQTL+L NNS  GELP    +C+QL ++DLG+N LSG+IP+WIGE L  LVVL L
Sbjct: 533 GSLVFIQTLNLRNNSFSGELPPSLANCTQLEILDLGENRLSGKIPSWIGENLSSLVVLRL 592

Query: 535 KSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSN--LAITSNYT 592
           +SN   G +P  +C L+++QILDLS NNIS  IP C +NF+ M++  S+   +  ++N+T
Sbjct: 593 RSNYLDGTLPLVLCHLAHLQILDLSHNNISDDIPHCFSNFSAMSKNGSTYEFIGHSNNHT 652

Query: 593 FERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVA 652
                  F+  Y D+V +  KG + EY  TL  VKI+D S N LSG IP+ I  L GLV+
Sbjct: 653 LPF----FIILYHDSVRVVLKGMELEYGKTLEQVKIMDLSSNNLSGEIPDGIAKLEGLVS 708

Query: 653 LNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKI 712
           L+LS N LTG I P+I  ++SL+ LDLS NQ  GG+P+ L  L+ LS +N+SYNNLSGKI
Sbjct: 709 LHLSNNRLTGIIPPRIGLMRSLESLDLSTNQLSGGLPNGLRDLNFLSSLNVSYNNLSGKI 768

Query: 713 PLGTQLQSFNASVYAGNPELCGLPLRNKCPDE---DSAASPERDDANTPEGEDQLITFGF 769
           PL TQLQ+F+ + +  N ELCG PL N+C  E   D + S    + +  + ED  I+  F
Sbjct: 769 PLSTQLQTFDNNSFVANAELCGKPLSNECAAEQAHDPSISQGSKNVDI-QDEDGFISRRF 827

Query: 770 YVSVILGFFIGFWGVCGTLL 789
           Y+S+  GF  GFW VCGTLL
Sbjct: 828 YLSMGTGFATGFWAVCGTLL 847

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 399/930 (42%), Positives = 521/930 (56%), Gaps = 150/930 (16%)

Query: 1   MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHS 60
           +E ER+ALL+FK+ + D++GILSSW  E +KRDCC WRGV+CS+ TGH+  LDL    + 
Sbjct: 37  IERERQALLKFKEDIADDFGILSSWRSEKNKRDCCKWRGVQCSSQTGHITSLDLSAYEYK 96

Query: 61  EP---LKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIP 117
           +    L+G ISPSLL+L  L HLDLS NDF G  +PEFIGSL K+RYL LSS    GP+P
Sbjct: 97  DEFRHLRGKISPSLLELQQLNHLDLSGNDFEGRSMPEFIGSLTKMRYLDLSSTYLAGPLP 156

Query: 118 SQLGNLSRLKYLDLS-------------------------YINLNKSRDWLRIIDKLPSL 152
            QLGNLS L +LDLS                         ++NL+K+  W   I+KLPSL
Sbjct: 157 HQLGNLSNLNFLDLSGNSNMSSENLDWLSRLSSLTHLGLNHLNLSKAIRWADAINKLPSL 216

Query: 153 RTLNLEHCHLP-PIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLD 211
             L L+ C LP PI PS  L L  S+ SL  L L  N LS+SIYPWLFN +S LV LDL 
Sbjct: 217 IDLLLKSCDLPSPITPS--LSLVTSSMSLAVLDLSCNQLSTSIYPWLFNFNSSLVHLDLS 274

Query: 212 SNLLQGSLLEPFDRMVSLRTLYLGFNELEE------------LFLGKNRLNGTINQWLSR 259
            N LQ S  + F  MVSL  L L +N+L+             L L  N+L G+I      
Sbjct: 275 YNHLQASPPDAFGNMVSLEYLDLSWNQLKGEIPKSFSSSLVFLDLSNNQLQGSIPDTFGN 334

Query: 260 MYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT-----------------LKF 302
           M  L  ++L+ N L G + +S F+ L NL+ L L  N+                   L  
Sbjct: 335 MTSLRTVNLTRNQLEGEIPKS-FNNLCNLQILKLHRNNLAGVLVKNLLACANDTLEILDL 393

Query: 303 SH--------DWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTV---- 350
           SH        D I    L  + LG  Q+    P+ +    Q+E+L I    +  TV    
Sbjct: 394 SHNQFIGSLPDLIGFSSLTRLHLGHNQLNGTLPESIAQLAQLELLKIPSNSLQGTVSEAH 453

Query: 351 -----------------------PDWF--WDLSHT--------------------IADFN 365
                                   DW   + L+H                     +   +
Sbjct: 454 LFSLSKLQRLDLSFNSLLTLNLSSDWVPQFQLTHIFLASCKLGPRFPGWLRTQKGVGWLD 513

Query: 366 LSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIP------------PLPSN------- 406
           +S + I   +PN    F    + ++IS+N   G++P             + SN       
Sbjct: 514 ISGSGISDVIPNWFWNFTSNLNRLNISNNQITGVVPNASIEFSRFPQMDMSSNYFEGSIP 573

Query: 407 -----ASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSL 461
                A  L+LS+N FS SIS LC+++     +LDLSNN+LSG LP+CW Q++ L VL+L
Sbjct: 574 VFIFYAGWLDLSKNMFSGSISSLCAVSRGASAYLDLSNNLLSGELPNCWAQWEGLVVLNL 633

Query: 462 ANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTW 521
            NN FSGKI  S+G L +I++L L NN L GELP   K+C++L ++DLG+N L G IP+W
Sbjct: 634 ENNNFSGKIQDSIGSLEAIESLHLRNNKLTGELPLSLKNCTKLRVIDLGRNKLCGNIPSW 693

Query: 522 IGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKS 581
           IG  LP LVVL+L+ N+F+G+IP  +CQL  IQILDLS NNISG+IP+C NNFT M Q+ 
Sbjct: 694 IGRSLPNLVVLNLRFNEFYGSIPMDMCQLKKIQILDLSNNNISGMIPRCFNNFTAMVQQG 753

Query: 582 SSNLAITSNYTFER-QGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTI 640
           S  L IT NYT    + +    SYVD  ++ WKG + EY  TLGL+K +D S N+LSG I
Sbjct: 754 S--LVITYNYTIPCFKPLSRPSSYVDKQMVQWKGRELEYEKTLGLLKSIDLSSNELSGEI 811

Query: 641 PEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSV 700
           P E+ +L+ L++LNLSRN LTG I P I QLK++D LDLS N+  G IPS+L Q+ RLSV
Sbjct: 812 PREVTNLLDLISLNLSRNFLTGLIPPTIGQLKAMDALDLSWNRLFGKIPSNLSQIDRLSV 871

Query: 701 MNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKC-PDEDSAASPERDDANTPE 759
           ++LS+N+  GKIP GTQLQSFN+S Y GNP+LCG PL  KC  DE    SP  +     E
Sbjct: 872 LDLSHNDFWGKIPSGTQLQSFNSSTYEGNPKLCGPPLLKKCLEDERGEHSPPNEGHVQKE 931

Query: 760 GEDQLITFGFYVSVILGFFIGFWGVCGTLL 789
             D      FY+ V LGF +GFWG+CGTLL
Sbjct: 932 AND----LWFYIGVALGFIVGFWGICGTLL 957

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490164|ref|XP_002268910.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 360/757 (47%), Positives = 477/757 (63%), Gaps = 37/757 (4%)

Query: 44   NTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLR 103
            NT G++++L    L +++ L+G+I  ++ K+  L  LDLS N   GS +P+ +G +  L 
Sbjct: 431  NTVGNMVLLSHFGLSYNQ-LRGSIPDTVGKMVLLSRLDLSNNQLQGS-VPDTVGKMVLLS 488

Query: 104  YLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLP 163
            +L LS  + +G +P  +G +  L +LDLS   L        I+  + SL  L L   HL 
Sbjct: 489  HLDLSGNQLQGSVPDTVGKMVLLSHLDLSRNQLQGCIP--DIVGNMVSLEKLYLSQNHLQ 546

Query: 164  PIIPSDLLHLNFSTSSLGALYLFENSLSSSIY-PWLFNISSKLVVLDLDSNLLQGSLLEP 222
              IP    +L     +L  L L  N+LS  I   ++   +  L  L L  N   GS+   
Sbjct: 547  GEIPKSPSNL----CNLQELELDRNNLSGQIALDFVACANDTLETLSLSDNQFSGSV--- 599

Query: 223  FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVF 282
                       +GF+ L +L L  N+LNGT+ + + ++  L +L ++ NSL   + E+  
Sbjct: 600  --------PALIGFSSLRKLHLDFNQLNGTLPESVGQLANLQSLDIASNSLQDTINEAHL 651

Query: 283  SELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDIS 342
              LS L  L L  NS T   S +W+PPFQL  + L SC++GPHFP WL+TQN +  LDIS
Sbjct: 652  FNLSRLSYLDLSSNSLTFNMSFEWVPPFQLYSLRLASCKLGPHFPSWLRTQNLLIELDIS 711

Query: 343  DAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPP 402
            ++ ISD +PDWFW+++ TI+  ++SNN IKG L NL L F   S+ ID+SSNYFEGLIP 
Sbjct: 712  NSEISDVLPDWFWNVTSTISTLSISNNRIKGTLQNLPLNFGSLSN-IDMSSNYFEGLIPQ 770

Query: 403  LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLA 462
            LPS+   L+LS NK S SIS LC++    L  LDLSNN L+G LP+CW Q++RL VL+L 
Sbjct: 771  LPSDVRWLDLSNNKLSGSISLLCAVVNPPLVLLDLSNNSLTGGLPNCWAQWERLVVLNLE 830

Query: 463  NNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWI 522
            NN FSG+IP S G L SI+TL L NN+L GELP  FK+C++L  +DLGKN LSG+IP WI
Sbjct: 831  NNRFSGQIPNSFGSLRSIRTLHLRNNNLTGELPLSFKNCTKLRFIDLGKNRLSGKIPEWI 890

Query: 523  GEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSS 582
            G  LP L+VL+L SN+F G I  ++CQL  IQILDLS NNI G++P+C+  FT M +K S
Sbjct: 891  GGSLPNLIVLNLGSNRFSGVICPELCQLKNIQILDLSNNNILGVVPRCVGGFTAMTKKGS 950

Query: 583  SNLAITSNYTFERQG-------IEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNK 635
              L I  NY+F + G       +    SYVD  ++ WK  + +++STLGLVK +D S NK
Sbjct: 951  --LVIAYNYSFTQNGRCRDDGCMPINASYVDRAMVRWKEREFDFKSTLGLVKSIDLSSNK 1008

Query: 636  LSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL 695
            LSG IPEE++DL+ LV+LNLSRNNLT  I  +I QLKSL+ LDLSQNQ  G IP+SL ++
Sbjct: 1009 LSGEIPEEVIDLIELVSLNLSRNNLTRLIPTRIGQLKSLEVLDLSQNQLFGEIPASLVEI 1068

Query: 696  SRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKC-PDEDSAASPER-- 752
            S LSV++LS NNLSGKIP GTQLQSFN   Y GNP LCGLPL  KC  D+    SP    
Sbjct: 1069 SDLSVLDLSDNNLSGKIPQGTQLQSFNIDSYKGNPALCGLPLLKKCSEDKIKQGSPTYNI 1128

Query: 753  DDANTPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL 789
            +D    +G D      FY+SV LGF +GFWGVCGTLL
Sbjct: 1129 EDKIQQDGND----MWFYISVALGFIVGFWGVCGTLL 1161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490166|ref|XP_003634046.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  603 bits (1554), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 394/896 (43%), Positives = 521/896 (58%), Gaps = 144/896 (16%)

Query: 1   MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQV---- 56
           +E ER+ALL FK+ LVDE+G+LSSWG  DD RDCC WRGV+CSN +GH+I+L L      
Sbjct: 31  IERERQALLHFKRGLVDEFGLLSSWG--DDNRDCCQWRGVQCSNQSGHIIMLHLPAPPNE 88

Query: 57  ----LVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEF 112
                V  + L+G ISPSLL+L HL HLDLS NDF    IP F+GSL++++YL+LS A F
Sbjct: 89  EYGEFVIYQSLRGDISPSLLELEHLTHLDLSCNDFEERHIPPFLGSLSRMQYLNLSHAYF 148

Query: 113 EGPIPSQ------------------------LGNLSRLKYLDLSYINLNKSRDWLR---- 144
              +P+Q                        L  LS L++LDLS ++L+K+  W +    
Sbjct: 149 AQTVPTQLGNLSNLLSLDLSNNYLKFGNLEWLSRLSSLRHLDLSSVDLSKAIHWSQGSIP 208

Query: 145 -IIDKLPSLRTLNLEHCHLPPIIPSD------LLHLNFSTSSLGA--------------- 182
             + K+  L  L+L    L   IP        L HL+ S + L                 
Sbjct: 209 DTVGKMVLLSHLDLSFNQLQGSIPDTVRKMVLLSHLDLSVNQLQGSIPDTVGKMVLLSHL 268

Query: 183 -----------------------------LYLFENSLSSSIYPWLFNISSKLVVLDLDSN 213
                                        L L  N L  SI   + N+   L  LDL  N
Sbjct: 269 DLVVNQLQGSIPDTGSIPDTVGNMVLLSHLDLSSNQLRGSIPDTVGNMV-LLSHLDLSRN 327

Query: 214 LLQGSLLEPFDRMVSLRTLYLGFNELE-------------ELFLGKNRLNGTINQWLSRM 260
            LQGS+      MVSL  LYL  N L+             +L L  N+LNGT+ + + ++
Sbjct: 328 QLQGSIPYTVGNMVSLENLYLSQNHLQGEIPKSLSNLCNLQLHLDFNQLNGTLPESVGQL 387

Query: 261 YKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSC 320
            KL++L ++ NSL G ++E+    LS L  L+L  NS T   S +W+PPFQL  +L  SC
Sbjct: 388 AKLESLDIASNSLQGTISEAHLFNLSQLSYLNLSPNSLTFNMSLEWVPPFQLFDLLSASC 447

Query: 321 QMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSL 380
           ++GPHFP WL+TQN++  LDIS++ ISD +PDWFW+++ T+   ++SNN IKG LPNLS 
Sbjct: 448 KLGPHFPSWLRTQNRLSELDISNSEISDVLPDWFWNVTSTVNTLSISNNRIKGTLPNLSS 507

Query: 381 RFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNN 440
            F+ FS+ ID+SSN FEG IP LP +   L+LS NK S SIS LC++ G +L  LDLSNN
Sbjct: 508 TFERFSN-IDMSSNCFEGSIPQLPYDVQWLDLSNNKLSRSISLLCTV-GTELLLLDLSNN 565

Query: 441 ILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKS 500
            LSG LP+CW Q+  LAVL+L NN FSG+IP S G L SI+TL L NN+L GELP  FK+
Sbjct: 566 SLSGGLPNCWAQWKSLAVLNLENNRFSGQIPNSFGSLRSIRTLHLRNNNLTGELPLSFKN 625

Query: 501 CSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSL 560
           C+ L  +DL KN LSG+IP WIG  LP L+VL+L SN+F G I  ++CQL  IQILDLS 
Sbjct: 626 CTSLRFIDLAKNRLSGKIPEWIGGSLPNLIVLNLGSNRFSGGISPKLCQLKNIQILDLSS 685

Query: 561 NNISGIIPKCLNNFTGMAQKSSSNLAITSNYTF-ERQGIEFL------ESYVDNVVLTWK 613
           NN+ G++P+C+ +F  M +K S  L I  NY+F +     +        SYVD  ++ WK
Sbjct: 686 NNMLGVVPRCVGSFIAMTKKGS--LVIAHNYSFTDYDNCSYFNCMPTNASYVDRALVKWK 743

Query: 614 GSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKS 673
             + +++STLGLVK +D S NKLSG IPEE++DLV LV+LNLSRNNLT  I  +I QLKS
Sbjct: 744 AREFDFKSTLGLVKSIDLSSNKLSGEIPEEVIDLVELVSLNLSRNNLTRLIPARIGQLKS 803

Query: 674 LDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELC 733
           L+ LDLS+NQ  G IP+SL ++S LSV++LS NNLSGKIP                    
Sbjct: 804 LEVLDLSRNQLFGEIPASLVEISDLSVLDLSDNNLSGKIP-------------------- 843

Query: 734 GLPLRNKCPDEDSAASPERDDANTPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL 789
            + ++   P  +     ++D      G D      FYVSV LGF +GFWGV  TL+
Sbjct: 844 QVKIKQDSPTHNIEDKIQQD------GND----MWFYVSVALGFIVGFWGVTATLV 889

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 374/755 (49%), Positives = 481/755 (63%), Gaps = 48/755 (6%)

Query: 63  LKGTISPSLLKL-YHLRHLDLSENDFSGSRIPEF-IGSLNKLRYLSLSSAEFEGPIPSQL 120
           L  +I P LL     L HLDLS N  +GS IPE+  G+++ L YL L S+E +  IP  +
Sbjct: 253 LTSSIYPWLLNFSTTLLHLDLSFNGLNGS-IPEYAFGNMSSLEYLDLHSSELDDEIPDTI 311

Query: 121 GNLSRLKYLDLSYINLNKSRDWLRIID---KLPSLRTLNLEHCHLPPIIPSDLLHLNFST 177
           G++  L YLD+S     +++ W  I D   K+  L  L+L    L   IP  + ++    
Sbjct: 312 GDMGSLAYLDIS-----ENQLWGSIPDTVGKMVLLSHLDLSLNQLQGSIPDTVGNM---- 362

Query: 178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMV--SLRTLYL- 234
            SL  L L EN L   I   L N+ + L  L+LD N L G L   F      +L TL+L 
Sbjct: 363 VSLKKLSLSENHLQGEIPKSLSNLCN-LQELELDRNNLSGQLAPDFVACANDTLETLFLS 421

Query: 235 ------------GFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVF 282
                       GF+ L EL L  N+LNGT+ + + ++  L +L ++ NSL G ++E+  
Sbjct: 422 DNQFSGSVPALIGFSSLRELHLDFNQLNGTLPESVGQLANLQSLDIASNSLQGTISEAHL 481

Query: 283 SELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDIS 342
             LS L  L+L  NS T   S DW+PPFQL+ + L SC++GP FP WL+TQNQ+  LDIS
Sbjct: 482 FNLSWLSYLNLSSNSLTFNMSLDWVPPFQLLSLRLASCKLGPRFPSWLRTQNQLSELDIS 541

Query: 343 DAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPP 402
           ++ ISD +PDWFW+++ T+   ++SNN IKG LPNLS  F  FS+ ID+SSN FEG IP 
Sbjct: 542 NSEISDVLPDWFWNVTSTVNTLSISNNRIKGTLPNLSSEFGSFSN-IDMSSNCFEGSIPQ 600

Query: 403 LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLA 462
           LP +   L+LS NK S SIS LC++ G +L  LDLSNN LSG LP+CW Q++ L VL+L 
Sbjct: 601 LPYDVQWLDLSNNKLSGSISLLCTV-GTELLLLDLSNNSLSGGLPNCWAQWESLVVLNLE 659

Query: 463 NNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWI 522
           NN FSG+IP S G L SIQTL L NN+L GELP  FK+C+ L  +DL KN LSG+IP WI
Sbjct: 660 NNRFSGQIPISFGSLRSIQTLHLRNNNLTGELPLSFKNCTSLRFIDLAKNRLSGKIPEWI 719

Query: 523 GEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSS 582
           G  LP L VL+L SN+F G I  ++CQL  IQILDLS NN+ G++P+C+  FT M +K S
Sbjct: 720 GGSLPNLTVLNLGSNRFSGGICPELCQLKNIQILDLSSNNMLGVVPRCVGGFTAMTKKGS 779

Query: 583 SNLAITSNYTFERQGIEFL----ESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSG 638
             L I  NY+F     ++       YVD  ++ WKG + EY+STLGLVK +DFS NKLSG
Sbjct: 780 --LVIVHNYSFADFSSKYSLIRNAFYVDRALVKWKGREFEYKSTLGLVKSIDFSSNKLSG 837

Query: 639 TIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRL 698
            IPEE++DLV LV+LNLSRNNLT  I  +I QLKSL+ LDLSQNQ  G IP+SL ++S L
Sbjct: 838 EIPEEVIDLVELVSLNLSRNNLTRLIPARIGQLKSLEVLDLSQNQLFGEIPASLVEISDL 897

Query: 699 SVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKCPDEDSAASPERDDANTP 758
           SV++LS NNLSGKIP GTQLQSFN   Y GNP LCGLPL  KC ++       + D+ T 
Sbjct: 898 SVLDLSDNNLSGKIPQGTQLQSFNIDSYKGNPALCGLPLLKKCFEDKI-----KQDSPTH 952

Query: 759 EGEDQLITFG----FYVSVILGFFIGFWGVCGTLL 789
             ED++   G    FYVSV LGF +GFWGVCGTLL
Sbjct: 953 NIEDKIQQDGNDMWFYVSVALGFIVGFWGVCGTLL 987

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470187|ref|XP_002268274.1| PREDICTED: receptor-like protein kinase 5-like [Vitis vinifera]

 Score =  593 bits (1529), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 360/834 (43%), Positives = 483/834 (57%), Gaps = 71/834 (8%)

Query: 2   EEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSE 61
           E+E++ALL FK +L+D    LSSW     K DCC WRGV CSN T  V+ L+L  +    
Sbjct: 9   EKEKQALLSFKHALLDPANQLSSWSI---KEDCCGWRGVHCSNVTARVLKLELAEM---- 61

Query: 62  PLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLG 121
            L G ISP+LLKL  L HLDLS NDF GS IP F+GS+  LRYL+L+ A F G +P QLG
Sbjct: 62  NLGGEISPALLKLEFLDHLDLSSNDFKGSPIPSFLGSMGSLRYLNLNDARFAGLVPHQLG 121

Query: 122 NLSRLKYLDLSY-------------------------INLNKSRDWLRIIDKLPSLRTLN 156
           NLS L++LDL Y                         ++L++   WL  +   PSL  L+
Sbjct: 122 NLSTLRHLDLGYNSGLYVENLGWISHLAFLKYLSMDSVDLHREVHWLESVSMFPSLSELH 181

Query: 157 LEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQ 216
           L  C L   + S L + NF+  SL  L L EN ++  +  WLFN+SS   +   + N  +
Sbjct: 182 LSECKLDSNMTSSLGYDNFT--SLTFLDLSENKINQEMPNWLFNLSSLAFLSLSE-NQFK 238

Query: 217 GSLLEPFDRMVSLRTLYLGFNE--------------LEELFLGKNRLNGTINQWLSRMYK 262
           G + E       L  L L FN               L EL L  NRLNGT+   + R+  
Sbjct: 239 GQIPESLGHFKYLEYLDLSFNSFHGPIPTSIGNLSSLRELNLYYNRLNGTLPTSMGRLSN 298

Query: 263 LDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQM 322
           L AL+L  +S+TG ++E+ F+ LS L+ + + + SF      +W PPFQL  +L+ SC++
Sbjct: 299 LMALALGYDSMTGAISEAHFTTLSKLETVQISETSFFFNVKSNWTPPFQLQFLLISSCKI 358

Query: 323 GPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRF 382
           GP FP WLQTQ  +  LD S +GI DT P+WFW  +  I   +LSNN I G LP + L  
Sbjct: 359 GPKFPAWLQTQKSLSYLDFSRSGIEDTAPNWFWKFASYIDQIHLSNNRISGDLPQVVLN- 417

Query: 383 DPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESIS-FLC-SING-HKLEFLDLSN 439
              ++ ID+SSN F G +P L  N  VLN++ N FS  IS F+C  +NG  KLE LD+S 
Sbjct: 418 ---NTIIDLSSNCFSGRLPRLSPNVVVLNIANNSFSGPISPFMCQKMNGTSKLEVLDIST 474

Query: 440 NILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFK 499
           N LSG + DCWM +  L  +++ +N  SGKIP SMG L  ++ LSL+NNS  G++PS  +
Sbjct: 475 NALSGEISDCWMHWQSLIHINMGSNNLSGKIPNSMGSLVGLKALSLHNNSFYGDVPSSLE 534

Query: 500 SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLS 559
           +C  L L++L  N  SG IP WI E    L+V+ L+SNKF+G IP Q+CQLS + +LD +
Sbjct: 535 NCKVLGLINLSDNKFSGIIPRWIVER-TTLMVIHLRSNKFNGIIPPQICQLSSLIVLDFA 593

Query: 560 LNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEF---LESYVDNVVLTWKGSQ 616
            NN+SG IPKCLNNF+ MA+       I   Y      +E     ESY++++VL  KG +
Sbjct: 594 DNNLSGEIPKCLNNFSAMAEG-----PIRGQYDIWYDALEVKYDYESYMESLVLDIKGRE 648

Query: 617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDF 676
            EY+  L  V+ +D S N LSG+IP EI  L GL  LNLS N+L G I+ KI  ++ L+ 
Sbjct: 649 SEYKEILKYVRAIDLSSNNLSGSIPVEIFSLSGLQFLNLSCNHLRGMISAKIGGMEYLES 708

Query: 677 LDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP 736
           LDLS+N+  G IP S+  L+ LS +N+SYNN SG+IP  TQLQS +   + GN ELCG P
Sbjct: 709 LDLSRNRLSGEIPQSIANLTFLSYLNVSYNNFSGRIPSSTQLQSLDPLSFFGNAELCGAP 768

Query: 737 LRNKCPDEDSAASPERDDANTPEGEDQLITFG-FYVSVILGFFIGFWGVCGTLL 789
           L   C  ++     E  D NT E   +      FY+ +  GF +GFWGVCG L 
Sbjct: 769 LTKNCTKDE-----EPQDTNTDEESREHPEIAWFYIGMGTGFVVGFWGVCGALF 817

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490426|ref|XP_003634086.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 357/832 (42%), Positives = 480/832 (57%), Gaps = 68/832 (8%)

Query: 2   EEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSE 61
           E+E++ALL FK +L+     LSSW     K DCC WRGV CSN T  V+ L+L  +    
Sbjct: 33  EKEKQALLSFKHALLHPANQLSSW---SIKEDCCGWRGVHCSNVTARVLKLELADM---- 85

Query: 62  PLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLG 121
            L G ISP+LLKL  L HLDLS NDF GS  P F+GS+  L++L LS   F G  P QLG
Sbjct: 86  NLGGEISPALLKLEFLDHLDLSSNDFRGSPFPSFLGSMGSLKFLDLSYTYFGGLAPPQLG 145

Query: 122 NLSRL------------------------KYLDLSYINLNKSRDWLRIIDKLPSLRTLNL 157
           NLS+L                        KYL +  I+L++ R WL  I  LPSL  L+L
Sbjct: 146 NLSKLLHLNLGHSGLYVENLNWISHLSSLKYLYMDGIDLHRGRHWLEPIGMLPSLLELHL 205

Query: 158 EHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG 217
            +C L   + S L ++NF+  SL  L L EN ++  +  WLFN+SS   +   D N  +G
Sbjct: 206 SNCQLDGNMTSSLGYVNFT--SLTVLDLSENKINQEMPNWLFNLSSLASLSLSD-NQFKG 262

Query: 218 SLLEPFDRMVSLRTLYLGFNE--------------LEELFLGKNRLNGTINQWLSRMYKL 263
            + E       L  L L  N               L EL L  NRLNGT+   + R+  L
Sbjct: 263 QIPESLGHFKYLEYLDLSSNSFHGPIPTSIGNLSSLRELNLYYNRLNGTLPTSMGRLSNL 322

Query: 264 DALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMG 323
            AL+L  +SLTG ++E+ F+ LSNLK + + + S       +W PPFQL  +L+ SC++G
Sbjct: 323 MALALGHDSLTGAISEAHFTTLSNLKTVQISETSLFFNVKSNWTPPFQLQFLLISSCKIG 382

Query: 324 PHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFD 383
           P FP WLQTQ  +  LD S +GI DT P+WFW  +  I   +LSNN I G L  + L   
Sbjct: 383 PKFPAWLQTQKSLSYLDFSASGIEDTAPNWFWKFASYIQQIHLSNNQISGDLLQVVLN-- 440

Query: 384 PFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESIS-FLC-SING-HKLEFLDLSNN 440
             ++ ID+SSN F G +P L  N  VLN++ N FS  IS F+C  +NG  +LE LD+S N
Sbjct: 441 --NAIIDLSSNCFSGRLPCLSPNVVVLNIANNSFSGPISPFMCQKMNGTSQLEVLDISIN 498

Query: 441 ILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKS 500
            LSG + DCWM +  L  +++ +N  SGKIP SMG L  ++ LSL+NNS  G++PS  ++
Sbjct: 499 ALSGEISDCWMHWQSLTHINMGSNNLSGKIPNSMGSLVGLKALSLHNNSFYGDVPSSLEN 558

Query: 501 CSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSL 560
           C  L L++L  N  SG IP WI E    ++V+ L++NKF+G IP Q+CQLS + +LDL+ 
Sbjct: 559 CKVLGLINLSDNKFSGIIPRWIVE-RTTVMVIHLRTNKFNGIIPPQICQLSSLIVLDLAD 617

Query: 561 NNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEF---LESYVDNVVLTWKGSQH 617
           N++SG IPKCLNNF+ MA+       I   Y      +E     ESY++++VL  KG + 
Sbjct: 618 NSLSGEIPKCLNNFSAMAEG-----PIRGQYDILYDALEAEYDYESYMESLVLDIKGRES 672

Query: 618 EYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFL 677
           EY+  L  V+ +D S N LSG+IP EI  L GL  LNLS N+L G I+ KI  ++ L+ L
Sbjct: 673 EYKEILKYVRAIDLSSNNLSGSIPVEIFSLSGLQLLNLSCNHLRGMISAKIGGMEYLESL 732

Query: 678 DLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPL 737
           DLS+N   G IP S+  L+ LS +N+SYN  SGKIP  TQLQS +   + GN ELCG PL
Sbjct: 733 DLSRNHLSGEIPQSIANLTFLSYLNVSYNKFSGKIPSSTQLQSLDPLYFFGNAELCGAPL 792

Query: 738 RNKCPDEDSAASPERDDANTPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL 789
              C  ++    P+  + N   GE   I + FY+ +  GF +GFWGVCG L 
Sbjct: 793 SKNCTKDE---EPQDTNTNEESGEHPEIAW-FYIGMGTGFVVGFWGVCGALF 840

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	789
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.922	0.897	0.319	2.7e-77
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.806	0.702	0.331	9.3e-75
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.889	0.788	0.296	3.8e-69
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.932	0.847	0.313	1.7e-68
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.830	0.883	0.317	7.2e-68
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.869	0.769	0.327	5.1e-67
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.840	0.650	0.312	8.7e-67
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.958	0.892	0.277	8.5e-65
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.885	0.741	0.308	6.2e-64
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.870	0.785	0.318	2e-63

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 252/788 (31%), Positives = 377/788 (47%)

Query:     2 EEEREALLEFKQSLV----DEYGILSSWGREDDKRDCCYWRGVRC--SNTTGHVIVLDLQ 55
             +++R++LLEFK  L+    D Y      G      DCC W  V C  S+ +  VI L+L 
Sbjct:    26 QDQRQSLLEFKNLLIHNIKDNYTAFEELGTWRPNSDCCKWLRVTCNASSPSKEVIDLNLF 85

Query:    56 VLVHSEPLKGTISPSXXXXXXXXXXXXSENDFSGSRIPEF-IGSLNKLRYLSLSSAEFEG 114
             +L+    +  +I               S N+  G  IP +   +L  L  L +    F G
Sbjct:    86 LLIPPGLVSSSILRPILRINSLVGLDVSFNNIQGE-IPGYAFVNLTSLISLDMCCNRFNG 144

Query:   115 PIPSQLGNLSRLKYLDLS--YINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLH 172
              IP +L +L+ L+ LDLS   I    S D    I +L +L+ L L+   +   IPS++  
Sbjct:   145 SIPHELFSLTNLQRLDLSRNVIGGTLSGD----IKELKNLQELILDENLIGGAIPSEI-- 198

Query:   173 LNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTX 232
                S   L  L L +N  +SSI P   +  +KL  +DL +N L   + +    +V+L T 
Sbjct:   199 --GSLVELLTLTLRQNMFNSSI-PSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTL 255

Query:   233 XXXXXXXXXXXXXKNRLNGTINQWLSRMYKLDALSLSGNS-LTGVVTESVFSELSNLKAL 291
                           N+L+G I   +  +  L+ L L  N+ L+G +  +    L  LK L
Sbjct:   256 SLSM----------NKLSGGIPSSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVL 305

Query:   292 HLDDNSFTLKFSHDW--IPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDT 349
              L+ N+  L+++++    P F+L  + L SC +  + P WL+ Q  +  LD+S   +   
Sbjct:   306 RLEGNN-KLQWNNNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGR 364

Query:   350 VPDWFWDLSHTIADFNLSNNHIKGKLP-NLSLRXXXXXXXXXXXXNYFEGLIPPL--PSN 406
              P W  DL   I +  LS+N + G LP NL  R            N F G IP     S 
Sbjct:   365 FPKWLADLK--IRNITLSDNRLTGSLPPNLFQRPSLYYLVLSR--NNFSGQIPDTIGESQ 420

Query:   407 ASVLNLSRNKFSESI-SFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF 465
               VL LS N FS S+   +  I   KL  LDLS N LSG  P  +     L  L +++N 
Sbjct:   421 VMVLMLSENNFSGSVPKSITKIPFLKL--LDLSKNRLSGEFPR-FRPESYLEWLDISSNE 477

Query:   466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEG 525
             FSG +P   G   S   L +  N+  GE P  F++ S LI +DL  N +SG + + I + 
Sbjct:   478 FSGDVPAYFG--GSTSMLLMSQNNFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQL 535

Query:   526 LPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNL 585
                + VLSL++N   G+IP  +  L+ +++LDLS NN+ G +P  L N T M  KS    
Sbjct:   536 SSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMI-KSPEPS 594

Query:   586 AIT-----SNYT----FERQGIEFLESYVDNVVLTWKGSQHE-YRSTLGLVKILDFSMNK 635
             A+T     S+YT     ER  IE     + ++V+ WK S+   +     L  +LD S NK
Sbjct:   595 AMTIRPYFSSYTDIPNIERL-IEIESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNK 653

Query:   636 LSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL 695
             L G IP  + +L  L  LNLS N  +G I      L+ ++ LDLS N   G IP +L +L
Sbjct:   654 LHGEIPTSLGNLKSLKVLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKL 713

Query:   696 SRLSVMNLSYNNLSGKIPLGTQLQSFN-ASVYAGNPELCGLPLRNKC-PDEDSAASPERD 753
             S L+ ++L  N L G+IP   QL   N  ++YA N  +CG+ ++  C P +    + E++
Sbjct:   714 SELNTLDLRNNKLKGRIPESPQLDRLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKE 773

Query:   754 DANTPEGE 761
             + +  E E
Sbjct:   774 EEDKEEEE 781

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 224/675 (33%), Positives = 329/675 (48%)

Query:    83 SENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDW 142
             SEN  + S IP ++  L  LR L L     +G IP+   NL  L+ LDLS  NL    + 
Sbjct:   255 SENSLN-SPIPNWLFGLTNLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSN-NLALQGEI 312

Query:   143 LRIIDKLPSLRTLNLEHCHLPPIIPS--DLLHLNFSTSSLGALYLFENSLSSSIYPWLFN 200
               ++  LP L+ L+L    L   I    D    N   +SL  L L  N L+ ++   L +
Sbjct:   313 PSVLGDLPQLKFLDLSANELNGQIHGFLDAFSRN-KGNSLVFLDLSSNKLAGTLPESLGS 371

Query:   201 ISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTXXXXXXXXXXXXXXKNRLNGTINQWLSRM 260
             + + L  LDL SN   GS+      M SL+                N +NGTI + L ++
Sbjct:   372 LRN-LQTLDLSSNSFTGSVPSSIGNMASLKKLDLS----------NNAMNGTIAESLGQL 420

Query:   261 YKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN---SFTLKFSHDWIPPFQLIIILL 317
              +L  L+L  N+  GV+ +S F  L +LK++ L      S   K    WIPPF+L +I +
Sbjct:   421 AELVDLNLMANTWGGVLQKSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFRLELIQI 480

Query:   318 GSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPD-WFWDLSHTIADFNLSNNHIKGKLP 376
              +C++G  FP WLQ Q ++  + + + GI DT+PD WF  +S  +    L+NN IKG+LP
Sbjct:   481 ENCRIGL-FPMWLQVQTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNRIKGRLP 539

Query:   377 NLSLRXXXXXXXXXXXXNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLD 436
                L             N FEG  P   +NA+ L L  N FS S+     +   ++E + 
Sbjct:   540 Q-KLAFPKLNTIDLSSNN-FEGTFPLWSTNATELRLYENNFSGSLPQNIDVLMPRMEKIY 597

Query:   437 LSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPS 496
             L +N  +G +P    +   L +LSL  N FSG  PK       +  + +  N+L GE+P 
Sbjct:   598 LFSNSFTGNIPSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENNLSGEIPE 657

Query:   497 FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQIL 556
                    L ++ L +N L G+IP  +      L  + L  NK  G +P  V +LS + +L
Sbjct:   658 SLGMLPSLSVLLLNQNSLEGKIPESL-RNCSGLTNIDLGGNKLTGKLPSWVGKLSSLFML 716

Query:   557 DLSLNNISGIIPKCLNNFTGMAQKSSSNLAIT-------SNYTFERQGIEFLESYVDNVV 609
              L  N+ +G IP  L N   +     S   I+       SN T   +G    E + + V 
Sbjct:   717 RLQSNSFTGQIPDDLCNVPNLRILDLSGNKISGPIPKCISNLTAIARGTNN-EVFQNLVF 775

Query:   610 LTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID 669
             +  +  ++E      +   ++ S N +SG IP EI+ L+ L  LNLSRN++ G I  KI 
Sbjct:   776 IVTRAREYE-----AIANSINLSGNNISGEIPREILGLLYLRILNLSRNSMAGSIPEKIS 830

Query:   670 QLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGN 729
             +L  L+ LDLS+N+F G IP S   +S L  +NLS+N L G IP   + Q  + S+Y GN
Sbjct:   831 ELSRLETLDLSKNKFSGAIPQSFAAISSLQRLNLSFNKLEGSIPKLLKFQ--DPSIYIGN 888

Query:   730 PELCGLPLRNKCPDE 744
               LCG PL  KCP +
Sbjct:   889 ELLCGKPLPKKCPKD 903

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 222/749 (29%), Positives = 353/749 (47%)

Query:    56 VLVHSEPLKGTISPSXXXXXXXXXXXXSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGP 115
             + + S    G +  S            S N  +GS  P  +  L KL  L LS   F G 
Sbjct:   128 LFLSSNGFLGQVPSSFSNLTMLAQLDLSYNKLTGS-FP-LVRGLRKLIVLDLSYNHFSGT 185

Query:   116 I-P-SQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHL 173
             + P S L  L +L+YL+L++ N + S         L  L  L L        +PS + +L
Sbjct:   186 LNPNSSLFELHQLRYLNLAFNNFSSSLP--SKFGNLHRLENLILSSNGFSGQVPSTISNL 243

Query:   174 NFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSN----LLQGSLLE-PFDRMVS 228
                 + L  LYL +N L+SS +P + N+++ L  LDL  N    ++  SLL  PF   ++
Sbjct:   244 ----TRLTKLYLDQNKLTSS-FPLVQNLTN-LYELDLSYNKFFGVIPSSLLTLPFLAHLA 297

Query:   229 LRTXXXXXXXXXXXXXXKNRLN----------GTINQWLSRMYKLDALSLSGNSLTGVVT 278
             LR                +RL           G I + +S++  L  L LS  + +  + 
Sbjct:   298 LRENNLAGSVEVSNSSTSSRLEIMYLGSNHFEGQILEPISKLINLKHLDLSFLNTSYPID 357

Query:   279 ESVFSELSNLKALHLDDNSFT-LKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIE 337
               +FS L +L++L L  NS +    S D   P  L ++ L  C +   FP  L+T  ++ 
Sbjct:   358 LKLFSSLKSLRSLDLSGNSISSASLSSDSYIPLTLEMLTLRHCDIN-EFPNILKTLKELV 416

Query:   338 VLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRXXXXXXXXXXXXNYFE 397
              +DIS+  +   +P+W W L   +    L NN+  G   +  +             N FE
Sbjct:   417 YIDISNNRMKGKIPEWLWSLP-LLQSVTLGNNYFTGFQGSAEILVNSSVLLLYLDSNNFE 475

Query:   398 GLIPPLPSNASVLNLSRNKFSESISF-LCSINGHKLEFLDLSNNILSGRLPDCWMQFDRL 456
             G +P LP +     ++ N F+  I   +C  N   L  +DLS N  +G +P C      L
Sbjct:   476 GALPDLPLSIKGFGVASNSFTSEIPLSIC--NRSSLAAIDLSYNNFTGPIPPC---LRNL 530

Query:   457 AVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSG 516
              ++ L NN   G IP ++    S++TL + +N L G+LP  F +CS L  + +  N +  
Sbjct:   531 ELVYLRNNNLEGSIPDALCDGASLRTLDVSHNRLTGKLPRSFVNCSSLKFLSVINNRIED 590

Query:   517 EIPTWIGEGLPKLVVLSLKSNKFHGNI-PFQVCQLSY--IQILDLSLNNISGIIP-KCLN 572
               P W+ + LP L VL+L+SN+F+G I P     L +  ++I ++S N  +G +P     
Sbjct:   591 TFPFWL-KALPNLQVLTLRSNRFYGPISPPHQGPLGFPELRIFEISDNKFTGSLPPNYFV 649

Query:   573 NFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFS 632
             N+   ++  + +  +   Y  E+   E    Y D + L +KG   E    L     +DFS
Sbjct:   650 NWKASSRTMNQDGGLYMVYE-EKLFDEGGYGYTDALDLQYKGLHMEQAKALTSYAAIDFS 708

Query:   633 MNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSL 692
              N+L G IPE I  L  L+A+N+S N  TG I   +  L++L+ LD+S+NQ  G IP+ L
Sbjct:   709 GNRLEGQIPESIGLLKALIAVNISNNAFTGHIPLSMANLENLESLDMSRNQLSGTIPNGL 768

Query:   693 CQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKC-----PDEDSA 747
               +S L+ +N+S+N L+G+IP GTQ+   + S + GN  LCGLPL+  C     P     
Sbjct:   769 GSISFLAYINVSHNQLTGEIPQGTQITGQSKSSFEGNAGLCGLPLKESCFGTGAPPMYHQ 828

Query:   748 ASPERDDANTPEGEDQLITFGFYVSVILG 776
                ++++    E E++ +  G  V++  G
Sbjct:   829 KQEDKEEEEEEEEEEEEVLNGRAVAIGYG 857

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 258/824 (31%), Positives = 382/824 (46%)

Query:     3 EEREALLEFKQSLVDEY----GI---LSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDL- 54
             E+R+ALLE K+    +     G+     SW    D   CCYW G+ C++ +G V+ LDL 
Sbjct:    42 EQRDALLELKKEFKIKKPCFDGLHPTTESWANNSD---CCYWDGITCNDKSGEVLELDLS 98

Query:    55 QVLVHSEPLKGTISPSXXXXXXXXXXXXSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEG 114
             +  + S     +   +            S N FSG +IP  I + + L  L LS   F G
Sbjct:    99 RSCLQSRFHSNSSLFTVLNLRFLTTLDLSYNYFSG-QIPSCIENFSHLTTLDLSKNYFSG 157

Query:   115 PIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLL--- 171
              IPS +GNLS+L +LDLS    N+    +     +  L  L ++   L  I P  LL   
Sbjct:   158 GIPSSIGNLSQLTFLDLSG---NEFVGEMPFFGNMNQLTNLYVDSNDLTGIFPLSLLNLK 214

Query:   172 HLN--------FS------TSSLGALYLFE---NSLSSSIYPWLFNISSKLVVLDLDSNL 214
             HL+        F+       SSL  L  FE   N+ + ++   LF I+S L  ++L +N 
Sbjct:   215 HLSDLSLSRNQFTGTLPSNMSSLSNLEYFEAWGNAFTGTLPSSLFTIAS-LTSINLRNNQ 273

Query:   215 LQGSLLEPFDRMVSLRTXXXXXXXXXXXXXXKNRLNGTINQWLSRMYKLDALSLSGNSLT 274
             L G+L   F  + S  T               N   G I + +S+   L  L LS  +  
Sbjct:   274 LNGTL--EFGNISSPSTLTVLDIS-------NNNFIGPIPKSISKFINLQDLDLSHLNTQ 324

Query:   275 GVVTESVFSELSNLKALHLDD-NSFT------LKFSH-DWIPPFQLI---IILLGSCQMG 323
             G V  S+F+ L +L+ L+L   N+ T      L  SH + I    L    +       + 
Sbjct:   325 GPVDFSIFTNLKSLQLLNLSHLNTTTTIDLNALFSSHLNSIYSMDLSGNHVSATTKISVA 384

Query:   324 PHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRXX 383
              H P  L +Q     L +S  GI++  P+      H + + ++SNN IKG++P   L   
Sbjct:   385 DHHPTQLISQ-----LYLSGCGITE-FPELLRS-QHKMTNLDISNNKIKGQVPGW-LWTL 436

Query:   384 XXXXXXXXXXNYFEGLIPPLPSNASVLNL--------SRNKFSESI-SFLCSINGHKLEF 434
                       N F G         S++          S N F+  I SF+C++    L  
Sbjct:   437 PKLIFVDLSNNIFTGFERSTEHGLSLITKPSMQYLVGSNNNFTGKIPSFICALRS--LIT 494

Query:   435 LDLSNNILSGRLPDCWMQF-DRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGE 493
             LDLS+N L+G +P C       L+ L+L  N   G +P+S+    S+++L + +N L+G+
Sbjct:   495 LDLSDNNLNGSIPPCMGNLKSTLSFLNLRQNRLGGGLPRSI--FKSLRSLDVGHNQLVGK 552

Query:   494 LPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYI 553
             LP  F   S L ++++  N ++   P W+   L KL VL L+SN FHG  P        +
Sbjct:   553 LPRSFIRLSALEVLNVENNRINDTFPFWLSS-LKKLQVLVLRSNAFHG--PIHHASFHTL 609

Query:   554 QILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWK 613
             +I++LS N  SG +P   N F      + S+L  T + + E+   +    Y D+VVL  K
Sbjct:   610 RIINLSHNQFSGTLPA--NYFVNW--NAMSSLMATEDRSQEKYMGDSFRYYHDSVVLMNK 665

Query:   614 GSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKS 673
             G + E    L +   LDFS NKL G IP  I  L  L  LNLS N  TG I   +  L+ 
Sbjct:   666 GLEMELVRILKIYTALDFSENKLEGEIPRSIGLLKELHVLNLSSNAFTGHIPSSMGNLRE 725

Query:   674 LDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELC 733
             L+ LD+SQN+  G IP  L  LS L+ MN S+N L G +P GTQ +  N S +  NP L 
Sbjct:   726 LESLDVSQNKLSGEIPQELGNLSYLAYMNFSHNQLGGLVPGGTQFRRQNCSSFKDNPGLY 785

Query:   734 GLPLRNKCPDEDSAASPERDDANTPEGEDQLITFGFYVSVILGF 777
             G  L   C D  + A P++ +    E ED+ + F  +++  +GF
Sbjct:   786 GSSLEEVCLDIHAPA-PQQHEPPELEEEDREV-FS-WIAAAIGF 826

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 223/703 (31%), Positives = 334/703 (47%)

Query:    99 LNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLE 158
             L  L+ L L S    G +P  +GNL RLK L L  +N N        +  L  L  L+L 
Sbjct:    49 LQHLQKLVLGSNHLSGILPDSIGNLKRLKVLVL--VNCNLFGKIPSSLGNLSYLTHLDLS 106

Query:   159 HCHLPPIIPSDLLHLNFST------SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDS 212
             +       P  + +LN  T      SS+  + L +N L   + P   +  SKL   D+  
Sbjct:   107 YNDFTSEGPDSMGNLNRLTDMLLKLSSVTWIDLGDNQLKGML-PSNMSSLSKLEAFDISG 165

Query:   213 NLLQGSLLEPFDRMVSLRTXXXXXXXXXXXXXXKNRLNGTINQW-LSRMYKLDALSLSGN 271
             N   G++      + SL                +N  +G      +S    L  L++  N
Sbjct:   166 NSFSGTIPSSLFMIPSL----------ILLHLGRNDFSGPFEIGNISSPSNLQLLNIGRN 215

Query:   272 SLT-GVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWL 330
             +    +V  S+FS L +L   +LD +   LK S     P  +  + L SC +   FPK+L
Sbjct:   216 NFNPDIVDLSIFSPLLSLG--YLDVSGINLKISSTVSLPSPIEYLGLLSCNIS-EFPKFL 272

Query:   331 QTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKG-KLPNLSLRXXXXXXXX 389
             + Q  +E LDIS   I   VP+W W L   +   N+S+N   G + P   ++        
Sbjct:   273 RNQTSLEYLDISANQIEGQVPEWLWSLPE-LRYVNISHNSFNGFEGPADVIQGGRELLVL 331

Query:   390 XXXXNYFEGLIPPLPS-NASVLNLSRNKFSESI-SFLCSINGHKLEFLDLSNNILSGRLP 447
                 N F+   P LP  + + L  S N+FS  I   +C ++   L  L LSNN  SG +P
Sbjct:   332 DISSNIFQDPFPLLPVVSMNYLFSSNNRFSGEIPKTICELDN--LRILVLSNNNFSGSIP 389

Query:   448 DCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILM 507
              C+     L VL L NN  SG  P+     H +Q+  + +N   GELP    +CS +  +
Sbjct:   390 RCFENL-HLYVLHLRNNNLSGIFPEE-AISHHLQSFDVGHNLFSGELPKSLINCSDIEFL 447

Query:   508 DLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNI--PFQVCQLSYIQILDLSLNNISG 565
             ++  N ++   P+W+ E LP L +L L+SN+F+G I  P      S ++I D+S N  +G
Sbjct:   448 NVEDNRINDTFPSWL-ELLPNLQILVLRSNEFYGPIFSPGDSLSFSRLRIFDISENRFTG 506

Query:   566 IIPKCLNNFTGMAQKSSSNLAITSNYT-FERQGIEFLESYVDNVVLTWKGSQHEY-RSTL 623
             ++P   + F G +  SS  + I      +   GI+  + Y  +V L  KG + E   S  
Sbjct:   507 VLPS--DYFVGWSVMSSV-VDIDGRIIQYTVTGID-RDFYHKSVALINKGLKMELVGSGF 562

Query:   624 GLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQ 683
              + K +D S N+L G IPE I  L  ++ L++S N  TG I P +  L +L  LDLSQN+
Sbjct:   563 TIYKTIDVSGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNLSNLQSLDLSQNR 622

Query:   684 FVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKCPD 743
               G IP  L +L+ L  MN S+N L G IP  TQ+Q+ ++S +  NP LCG PL  KC  
Sbjct:   623 LSGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENPGLCGAPLLKKCGG 682

Query:   744 EDSAASPERDDANTPEGEDQLITFGFYVSVILGFFIGFWGVCG 786
             E+ A   E+D+    E EDQ+ +   +++  +G+  G   VCG
Sbjct:   683 EEEATKQEQDEDK--EEEDQVFS---WIAAAIGYVPGV--VCG 718

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 247/755 (32%), Positives = 351/755 (46%)

Query:    63 LKGTISPSXXXXXXXXXXXXSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGN 122
             L G I  S            S ND     I + +G+L  LR LSL+S +F G IPS LGN
Sbjct:   141 LFGEIPTSLRSLSYLTDLDLSYNDDLTGEILDSMGNLKHLRVLSLTSCKFTGKIPSSLGN 200

Query:   123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHL-NFSTSSLG 181
             L+ L  LDLS+     + +    +  L SLR LNL  C+    IP+ L  L N +   + 
Sbjct:   201 LTYLTDLDLSWNYF--TGELPDSMGNLKSLRVLNLHRCNFFGKIPTSLGSLSNLTDLDIS 258

Query:   182 AL-YLFE--NSLSS-----SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTXX 233
                +  E  +S+SS          L N+SS L  +DL SN  +  L  P   M SL    
Sbjct:   259 KNEFTSEGPDSMSSLNRLTDFQLMLLNLSS-LTNVDLSSNQFKAML--P-SNMSSLSKLE 314

Query:   234 XXXXXXXXXXXXKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHL 293
                          N  +GTI   L  +  L  L L  N  +G +     S  SNL+ L++
Sbjct:   315 AFDISG-------NSFSGTIPSSLFMLPSLIKLDLGTNDFSGPLKIGNISSPSNLQELYI 367

Query:   294 DDNSFTLKFSHDWIPPFQLIIILLGSCQMGP--HFPKWLQTQNQIEVLDIS--DAGISDT 349
              +N+         +    L  + L     G    F  +LQ ++ +  LD+S  +  IS +
Sbjct:   368 GENNINGPIPRSILKLVGLSALSLSFWDTGGIVDFSIFLQLKS-LRSLDLSGINLNISSS 426

Query:   350 --VPDWFWDL---SHTIADF-------------NLSNNHIKGKLPNLSLRXXXXXXXXXX 391
               +P     L   S  I+ F             ++S N I+G++P    R          
Sbjct:   427 HHLPSHMMHLILSSCNISQFPKFLENQTSLYHLDISANQIEGQVPEWLWRLPTLRYVNIA 486

Query:   392 XXNYFEGLIPPLPSNASVLNLSRNKFSESIS-FLCSINGHKLEFLDLSNNILSGRLPDCW 450
               N F G +  LP+       S NKFS  I   +C I       L LSNN  SG +P C+
Sbjct:   487 Q-NAFSGELTMLPNPIYSFIASDNKFSGEIPRAVCEIGT-----LVLSNNNFSGSIPPCF 540

Query:   451 MQFDR-LAVLSLANNFFSGKIPKSMGFLHS-IQTLSLYNNSLIGELPSFFKSCSQLILMD 508
                ++ L++L L NN  SG IP+    LH  +++L + +N L G+ P    +CS L  ++
Sbjct:   541 EISNKTLSILHLRNNSLSGVIPEES--LHGYLRSLDVGSNRLSGQFPKSLINCSYLQFLN 598

Query:   509 LGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNI--PFQVCQLSYIQILDLSLNNISGI 566
             + +N ++   P+W+ + LP L +L L+SN+FHG I  P      S ++  D+S N  SG+
Sbjct:   599 VEENRINDTFPSWL-KSLPNLQLLVLRSNEFHGPIFSPGDSLSFSKLRFFDISENRFSGV 657

Query:   567 IPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEY-RSTLGL 625
             +P   + F G +  SS    I +   F   G +  ES+  +VVLT KG   E   S   +
Sbjct:   658 LPS--DYFVGWSVMSSFVDIIDNTPGFTVVGDD-QESFHKSVVLTIKGLNMELVGSGFEI 714

Query:   626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFV 685
              K +D S N+L G IPE I  L  L+ LN+S N  TG I P +  L +L  LDLSQN+  
Sbjct:   715 YKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLS 774

Query:   686 GGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKCPDED 745
             G IP  L +L+ L+ MN SYN L G IP GTQ+QS N+S +A NP LCG PL+ KC  E 
Sbjct:   775 GSIPGELGELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGLCGAPLQKKCGGE- 833

Query:   746 SAASPERDDANTPEGEDQLITFGFYVSVILGFFIG 780
                  E +D    E +  L      +  + G F G
Sbjct:   834 -----EEEDKEKEEKDKGLSWVAAAIGYVPGLFCG 863

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 8.7e-67, P = 8.7e-67
 Identities = 221/707 (31%), Positives = 329/707 (46%)

Query:    92 IPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPS 151
             IP+ I SL  L  L+LS + F G IP  LGNLS L +L LS  NL    +    I  L  
Sbjct:   315 IPDSISSLKNLTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNL--IGEIPSSIGNLNQ 372

Query:   152 LRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLD 211
             L    +    L   +P+ L +L    + L  + L  N  + S+ P +  +S KL     D
Sbjct:   373 LTNFYVGGNKLSGNLPATLSNL----TKLNTISLSSNQFTGSLPPSISQLS-KLKFFFAD 427

Query:   212 SNLLQGSLLEPFDRMVSLRTXXXXXXXXXXXXXXKNRLNGTIN-QWLSRMYKLDALSLSG 270
              N   G++L P  ++ SL                 N+LN  +  + +  +  L+   +  
Sbjct:   428 DNPFIGAILSPLLKIPSLTRIHLSY----------NQLNDLVGIENIFMLPNLETFYIYH 477

Query:   271 NSLTGV--VTESVFSELSNLKALHLDDNSF-TLKFSHDWIPPFQLIIILLGSCQMGPHFP 327
              + T V  +  +VFS L  L  L++      T   + D+  P  L  + L SC +   FP
Sbjct:   478 YNYTKVRPLDLNVFSSLKQLGTLYISRIPISTTNITSDF--PSNLEYLSLRSCNI-TDFP 534

Query:   328 KWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRXXXXXX 387
             ++++    +++LD+S+  I   VPDW W +  T+   +LSNN + G   ++         
Sbjct:   535 EFIRKGRNLQILDLSNNKIKGQVPDWLWRMP-TLNSVDLSNNSLSGFHVSVKASPESQLT 593

Query:   388 XXXXXXNYFEGLIPPLPSNA-SVLNLSRNKFSESIS-FLCSINGHKLEFLDLSNNILSGR 445
                   N F+G +  LPS +    + S N F+  I   +C ++   LE LDLSNN L+G 
Sbjct:   594 SVDLSSNAFQGPLF-LPSKSLRYFSGSNNNFTGKIPRSICGLSS--LEILDLSNNNLNGS 650

Query:   446 LPDCWMQF-DRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQL 504
             LP C       L+ L L NN  SG +P+       +++L + +N + G+LP     CS L
Sbjct:   651 LPWCLETLMSSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSL 710

Query:   505 ILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHG---NIPFQVCQLSYIQILDLSLN 561
              ++++G N ++   P  +   L KL VL L SNKFHG   N+         +QI+D+S N
Sbjct:   711 EVLNVGSNRINDMFPFELNS-LQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHN 769

Query:   562 NISGIIPK-CLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYR 620
             +  GI+P     N+T M+ K  +N  I   Y            Y  ++VL  KG   E  
Sbjct:   770 DFFGILPSDYFMNWTAMSSKKDNN--IEPEYIQNPSVYGSSLGYYTSLVLMSKGVSMEME 827

Query:   621 STLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLS 680
               L +   +D S N+L G IP+ I  L  L  LN+S N  TG I   +  LK+L+ LD+S
Sbjct:   828 RVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDIS 887

Query:   681 QNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNK 740
             QN   G IP  L  LS L+ +N+S+N L G IP GTQ Q    S Y GNP L G  L N 
Sbjct:   888 QNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSLENV 947

Query:   741 CPDEDSAASPERDDANTPEGEDQ------LITFGFYVSVILGFFIGF 781
             C     +   + +   T E E++          GF   V+ G  +G+
Sbjct:   948 CGHIKESTPTQTEPLETKEEEEEESFSWIAAGLGFAPGVVFGLAMGY 994

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 226/813 (27%), Positives = 376/813 (46%)

Query:     2 EEEREALLEFKQSL-VD-EYGILSSW-GREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLV 58
             +++R+ALLEF+    ++  + I++ W G  +   DCC W GV C++ +G VI LD+    
Sbjct:    36 DDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTF 95

Query:    59 HSEPLKGTISPSXXXXXXXXXXXXSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPS 118
              +  LK   + S            +  +  G  IP  +G+L+ L  ++L   +F G IP+
Sbjct:    96 LNNYLK--TNSSLFKLQYLRHLDLTNCNLYGE-IPSSLGNLSHLTLVNLYFNKFVGEIPA 152

Query:   119 QLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTS 178
              +GNL++L++L L+  N   + +    +  L  L  L L    L   IP  +  L     
Sbjct:   153 SIGNLNQLRHLILA--NNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLK---- 206

Query:   179 SLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTXX----- 233
              L  L L  N+L   I   L N+S+ LV L L  N L G +      ++ LR        
Sbjct:   207 QLRNLSLASNNLIGEIPSSLGNLSN-LVHLVLTHNQLVGEVPASIGNLIELRVMSFENNS 265

Query:   234 ---------XXXXXXXXXXXXKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSE 284
                                   N    T    +S  + L+   +S NS +G   +S+   
Sbjct:   266 LSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLL- 324

Query:   285 LSNLKALHLDDNSFT--LKFSHDWIPPFQLIIILLGSCQM-GPHFPKWLQTQNQIEVLDI 341
             + +L++++L +N FT  ++F++      +L  ++LG  ++ GP  P+ +     +E LDI
Sbjct:   325 IPSLESIYLQENQFTGPIEFANT-SSSTKLQDLILGRNRLHGP-IPESISRLLNLEELDI 382

Query:   342 SDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRXXXXXXXXXXXXNYFEGLIP 401
             S    +  +P     L + +   +LS N+++G++P    R            + FE    
Sbjct:   383 SHNNFTGAIPPTISKLVNLL-HLDLSKNNLEGEVPACLWRLNTMVLSHNSFSS-FENTSQ 440

Query:   402 PLPSNASVLNLSRNKFSESISFL-CSINGHKLEFLDLSNNILSGRLPDCWMQFD-RLAVL 459
                +    L+L+ N F   I ++ C ++   L FLDLSNN+ SG +P C   F   +  L
Sbjct:   441 E-EALIEELDLNSNSFQGPIPYMICKLSS--LGFLDLSNNLFSGSIPSCIRNFSGSIKEL 497

Query:   460 SLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIP 519
             +L +N FSG +P        + +L + +N L G+ P    +C  L L+++  N +    P
Sbjct:   498 NLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFP 557

Query:   520 TWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSY--IQILDLSLNNISGIIPKC-LNNFTG 576
             +W+ E LP L VL+L+SNKF+G +  +   + +  ++I+D+S NN SG +P    +N+  
Sbjct:   558 SWL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKD 616

Query:   577 MAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKL 636
             M   +         Y  E     + +SY   + +  KG    +       + +DFS NK+
Sbjct:   617 MTTLTEE----MDQYMTEFW--RYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKI 670

Query:   637 SGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS 696
             +G IPE +  L  L  LNLS N  T  I   +  L  L+ LD+S+N+  G IP  L  LS
Sbjct:   671 NGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALS 730

Query:   697 RLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKCPDEDSAASPERDDAN 756
              LS MN S+N L G +P GTQ Q    S +  NP L GL   + C D  +     +   +
Sbjct:   731 FLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYGL--EDICRDTGALNPTSQLPED 788

Query:   757 TPEGEDQLITFGFYVSVILGFFIGFWGVCGTLL 789
               E E+ +     +V+  + +  G   +CG ++
Sbjct:   789 LSEAEENMFN---WVAAAIAYGPGV--LCGLVI 816

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 6.2e-64, P = 6.2e-64
 Identities = 234/758 (30%), Positives = 343/758 (45%)

Query:    60 SEPLKGTISPSXXXXXXXXXXXXSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQ 119
             S    G I  S            S N FSG +IP  IG+L+ L +LSL S +F G IPS 
Sbjct:   182 SNQFSGQIPSSIGNLSHLTSLELSSNQFSG-QIPSSIGNLSNLTFLSLPSNDFFGQIPSS 240

Query:   120 LGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSS 179
             +GNL+RL YL LSY N     +       L  L  L ++   L   +P  LL+L    + 
Sbjct:   241 IGNLARLTYLYLSYNNF--VGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLLNL----TR 294

Query:   180 LGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSL------LEPFDRMV------ 227
             L AL L  N  + +I P   ++ S L+  +  +N   G+L      + P  R+       
Sbjct:   295 LSALLLSHNQFTGTI-PNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDNQL 353

Query:   228 --SLRTXXXXX-XXXXXXXXXKNRLNGTINQWLSRMYKLDALSLSG-NSLTGVVTESVFS 283
               +L                  N   GTI + LSR   L    LS  N+    V  S+FS
Sbjct:   354 NGTLHFGNISSPSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSHLNTQCRPVDFSIFS 413

Query:   284 ELSNLKALHLDDNSFTLKFSHDWIPPFQLI--IILLGSCQMGPHFPKWLQT--QNQIEVL 339
              L +L  L L   + T    +D +P F+ +  + + G+     +            I+ L
Sbjct:   414 HLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQSL 473

Query:   340 DISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGK-------LPNLS-LRXXXXXXXXXX 391
              +S  GI+D  P+      H +   ++SNN IKG+       LPNL  L           
Sbjct:   474 YLSGCGITD-FPE-ILRTQHELGFLDVSNNKIKGQVPGWLWTLPNLFYLNLSNNTFISFE 531

Query:   392 XXNYFEGLIPPLPSNASVLNLSRNKFSESI-SFLCSINGHKLEFLDLSNNILSGRLPDCW 450
               +   GL      +   L  S N F+  I SF+C +    L  LDLS N  +G +P C 
Sbjct:   532 SSSKKHGLSSVRKPSMIHLFASNNNFTGKIPSFICGLRS--LNTLDLSENNYNGSIPRCM 589

Query:   451 MQF-DRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509
              +    L VL+L  N  SG +PK +    S+++L + +N L+G+LP      S L ++++
Sbjct:   590 EKLKSTLFVLNLRQNNLSGGLPKHI--FESLRSLDVGHNLLVGKLPRSLIRFSNLEVLNV 647

Query:   510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPK 569
               N ++   P W+   L KL VL L+SN FHG  P        ++I+D+S N+ +G +P 
Sbjct:   648 ESNRINDTFPFWLSS-LSKLQVLVLRSNAFHG--PIHEATFPELRIIDISHNHFNGTLPT 704

Query:   570 CLNNFTGMAQKSS-SNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKI 628
                 F   +  SS       SN  +   G+     Y D++VL  KG   E    L +   
Sbjct:   705 --EYFVKWSAMSSLGKNEDQSNEKYMGSGLY----YQDSMVLMNKGLAMELVRILTIYTA 758

Query:   629 LDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGI 688
             LDFS NK  G IP+ I  L  L+ LNLS N   G I   +  L +L+ LD+SQN+  G I
Sbjct:   759 LDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKLTGEI 818

Query:   689 PSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKCPDEDSAA 748
             P  L  LS L+ MN S+N L+G +P GTQ +  N S +  N  L G  L   C D+ + A
Sbjct:   819 PQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDKHTPA 878

Query:   749 SPERDDANTPEGEDQLITF-----GFYVSVILGFFIGF 781
             S + +   T E +++ I++     GF   ++ G  IG+
Sbjct:   879 SQQNETTETEEEDEEEISWIAAAIGFIPGIVFGLTIGY 916

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 240/753 (31%), Positives = 348/753 (46%)

Query:    63 LKGTISPSXXXXXXXXXXXXSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGN 122
             L G IS S            S N+FSG  IP  +G+L  L  L L    F G IPS LGN
Sbjct:   123 LSGQISSSIGNLSHLTTLDLSGNNFSGW-IPSSLGNLFHLTSLHLYDNNFGGEIPSSLGN 181

Query:   123 LSRLKYLDLSYIN-LNKSRDWLRIIDKLPSLR--------TLNLEHCHLPPIIPSDLLHL 173
             LS L +LDLS  N + +       +++L  LR         L LE  +L  +    L H 
Sbjct:   182 LSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHN 241

Query:   174 NFS------TSSLGALYLFE---NSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFD 224
              F+       +SL  L  F    N+   +I   LF I S + ++ LD+N L G+L   F 
Sbjct:   242 QFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPS-ITLIFLDNNQLSGTL--EFG 298

Query:   225 RMVSLRTXXXXXXXXXXXXXXKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSE 284
              + S                  N L G I   +SR+  L  L LS  ++ G V  ++FS 
Sbjct:   299 NISSPSNLLVLQLGG-------NNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFSH 351

Query:   285 LSNLKALHLDDNSFTLKFSHDWIPP-FQLIIIL--LGSCQMGPHFPKWLQTQ-NQIEVLD 340
             L  L  L+L  ++ T     + +   F+++I L   G+  +  +           I  L+
Sbjct:   352 LKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSDPPLGLIGSLN 411

Query:   341 ISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPN-LSLRXXXXXXXXXXXXNY---- 395
             +S  GI++  PD        +   ++SNN IKG++P+ L L+             +    
Sbjct:   412 LSGCGITE-FPD-ILRTQRQMRTLDISNNKIKGQVPSWLLLQLEYMHISNNNFIGFERST 469

Query:   396 -FEGLIPPLPSNASVLNLSRNKFSESI-SFLCSINGHKLEFLDLSNNILSGRLPDCWMQF 453
               E  + P PS       S N FS  I SF+CS+    L  LDLSNN  SG +P C  +F
Sbjct:   470 KLEKTVVPKPSMKHFFG-SNNNFSGKIPSFICSLRS--LIILDLSNNNFSGAIPPCVGKF 526

Query:   454 -DRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN 512
                L+ L+L  N  SG +PK++  + S+++L + +N L G+LP      S L ++++  N
Sbjct:   527 KSTLSDLNLRRNRLSGSLPKTI--IKSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESN 584

Query:   513 GLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPK-CL 571
              ++   P W+   L KL VL L+SN FHG I     +   ++I+D+S N+ +G +P  C 
Sbjct:   585 RINDTFPFWLSS-LKKLQVLVLRSNAFHGRI--HKTRFPKLRIIDISRNHFNGTLPSDCF 641

Query:   572 NNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDF 631
               +TGM     +       Y     G  +   Y D++VL  KG + E    L +   LDF
Sbjct:   642 VEWTGMHSLEKNEDRFNEKY----MGSGY---YHDSMVLMNKGLEMELVRILKIYTALDF 694

Query:   632 SMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSS 691
             S NK  G IP  I  L  L  LNLS N  TG I   +  L+ L+ LD+S+N+  G IP  
Sbjct:   695 SGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQE 754

Query:   692 LCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKCPDEDSAASPE 751
             L  LS L+ MN S+N L G++P GTQ ++ +AS +  N  LCG PL       +   S E
Sbjct:   755 LGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEECRVVHEPTPSGE 814

Query:   752 RDDANTPEGEDQL----ITFGFYVSVILGFFIG 780
              +   T E E  L       GF   ++LG  IG
Sbjct:   815 SE---TLESEQVLSWIAAAIGFTPGIVLGLTIG 844

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	789
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-70
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	9e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  248 bits (634), Expect = 4e-70
 Identities = 234/778 (30%), Positives = 343/778 (44%), Gaps = 167/778 (21%)

Query: 3   EEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEP 62
           EE E LL FK S+ D    LS+W   +   D C W+G+ C+N++  V+ +DL      + 
Sbjct: 29  EELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGITCNNSS-RVVSIDLS----GKN 80

Query: 63  LKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSL-NKLRYLSLSSAEFEGPIPSQLG 121
           + G IS ++ +L +++ ++LS N  SG  IP+ I +  + LRYL+LS+  F G IP    
Sbjct: 81  ISGKISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--- 136

Query: 122 NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLG 181
                                      +P+L TL+L +  L   IP+D+     S SSL 
Sbjct: 137 -------------------------GSIPNLETLDLSNNMLSGEIPNDI----GSFSSLK 167

Query: 182 ALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEE 241
            L L  N L   I   L N++S L  L L SN L G +     +M SL+ +YLG+N    
Sbjct: 168 VLDLGGNVLVGKIPNSLTNLTS-LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN--- 223

Query: 242 LFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLK 301
                  L+G I   +  +  L+ L L  N+LTG +  S    L NL+ L L  N  +  
Sbjct: 224 -------LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLS-- 273

Query: 302 FSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTI 361
                                GP  P     Q  I  LD+SD  +S  +P+    L   +
Sbjct: 274 ---------------------GPIPPSIFSLQKLIS-LDLSDNSLSGEIPELVIQL-QNL 310

Query: 362 ADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESI 421
              +L +N+  GK+P ++L   P    + + SN F G IP         NL ++      
Sbjct: 311 EILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFSGEIPK--------NLGKH------ 355

Query: 422 SFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQ 481
                   + L  LDLS N L+G +P+       L  L L +N   G+IPKS+G   S++
Sbjct: 356 --------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407

Query: 482 TLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHG 541
            + L +NS  GELPS F     +  +D+  N L G I +   + +P L +LSL  NKF G
Sbjct: 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFG 466

Query: 542 NIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFL 601
            +P        ++ LDLS N  SG +P+ L + + + Q                      
Sbjct: 467 GLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ---------------------- 503

Query: 602 ESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLT 661
                                      L  S NKLSG IP+E+     LV+L+LS N L+
Sbjct: 504 ---------------------------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 662 GQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSF 721
           GQI     ++  L  LDLSQNQ  G IP +L  +  L  +N+S+N+L G +P      + 
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAI 596

Query: 722 NASVYAGNPELCGLPLRNKCPDEDSAASPERDDANTPEGEDQLITFGFYVSVILGFFI 779
           NAS  AGN +LCG        D  S   P +    TP       ++ FY++  LG F+
Sbjct: 597 NASAVAGNIDLCG-------GDTTSGLPPCKRVRKTP-------SWWFYITCTLGAFL 640

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 85.3 bits (211), Expect = 4e-17
 Identities = 56/144 (38%), Positives = 78/144 (54%), Gaps = 10/144 (6%)

Query: 612 WKGSQHEYRSTLG--LVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID 669
           W G+  ++ ST G   +  L      L G IP +I  L  L ++NLS N++ G I P + 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 670 QLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP--LGTQL---QSFNAS 724
            + SL+ LDLS N F G IP SL QL+ L ++NL+ N+LSG++P  LG +L    SFN  
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN-- 521

Query: 725 VYAGNPELCGLPLRNKCPDEDSAA 748
            +  N  LCG+P    C    S  
Sbjct: 522 -FTDNAGLCGIPGLRACGPHLSVG 544

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 3e-10
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 435 LDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGEL 494
           L L N  L G +P+   +   L  ++L+ N   G IP S+G + S++ L L  NS  G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 495 PSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLP 527
           P      + L +++L  N LSG +P  +G G  
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG-GRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 6e-09
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 37  WRGVRCS--NTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPE 94
           W G  C   +T G   +  L +   ++ L+G I   + KL HL+ ++LS N   G+ IP 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGL--DNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPP 460

Query: 95  FIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDL 131
            +GS+  L  L LS   F G IP  LG L+ L+ L+L
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 7e-09
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query: 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNS 489
             L+ ++LS N + G +P        L VL L+ N F+G IP+S+G L S++ L+L  NS
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 490 LIGELPS 496
           L G +P+
Sbjct: 502 LSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 480 IQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKF 539
           I  L L N  L G +P+       L  ++L  N + G IP  +G  +  L VL L  N F
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSF 478

Query: 540 HGNIPFQVCQLSYIQILDLSLNNISGIIPKCL 571
           +G+IP  + QL+ ++IL+L+ N++SG +P  L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 6e-07
 Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 29/133 (21%)

Query: 343 DAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPP 402
           D     T   WF      I    L N  ++G +PN   +     S I++S N   G IPP
Sbjct: 408 DCQFDSTKGKWF------IDGLGLDNQGLRGFIPNDISKLRHLQS-INLSGNSIRGNIPP 460

Query: 403 LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLA 462
                                L SI    LE LDLS N  +G +P+   Q   L +L+L 
Sbjct: 461 S--------------------LGSITS--LEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 463 NNFFSGKIPKSMG 475
            N  SG++P ++G
Sbjct: 499 GNSLSGRVPAALG 511

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 1  MEEEREALLEFKQSLVDEY-GILSSWGREDDKRDCCYWRGVRCS 43
          + ++R+ALL FK SL  +  G LSSW       D C W GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSS--SDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 4e-06
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 63  LKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLG 121
           ++G I PSL  +  L  LDLS N F+GS IPE +G L  LR L+L+     G +P+ LG
Sbjct: 454 IRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 507 MDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI 566
           + L   GL G IP  I + L  L  ++L  N   GNIP  +  ++ +++LDLS N+ +G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 567 IPKCLNNFTGM 577
           IP+ L   T +
Sbjct: 482 IPESLGQLTSL 492

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 239 LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSF 298
           L+ L L  NRL    +     +  L  L LSGN+LT +  E+ FS L +L++L L  N+ 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA-FSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 67/270 (24%), Positives = 103/270 (38%), Gaps = 31/270 (11%)

Query: 359 HTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYF---EGLIPPLPSNASVLNLSRN 415
             +   +L+ N ++  +  L        +S+D+ +N       LI  L SN   L+LS N
Sbjct: 93  LPLPSLDLNLNRLRSNISELLEL--TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN 150

Query: 416 KFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMG 475
           K     S L   N   L+ LDLS N LS  LP        L  L L+ N  S  +P  + 
Sbjct: 151 KIESLPSPLR--NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE 206

Query: 476 FLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLK 535
            L +++ L L NNS+I EL S   +   L  ++L  N    ++P  IG         +L+
Sbjct: 207 LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN-KLEDLPESIGNL------SNLE 258

Query: 536 SNKFHGNIPFQVCQLSYIQI---LDLSLNNISGIIPK-----------CLNNFTGMAQKS 581
           +     N    +  L  +     LDLS N++S  +P                 T  A + 
Sbjct: 259 TLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALEL 318

Query: 582 SSNLAITSNYTFERQGIEFLESYVDNVVLT 611
             N  + +N           E+      L 
Sbjct: 319 KLNSILLNNNILSNGETSSPEALSILESLN 348

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 81/348 (23%), Positives = 120/348 (34%), Gaps = 86/348 (24%)

Query: 138 KSRDWLRIIDKLPSLRTLNLEHCHL--------PPII--PSDLLHLNFSTSSLGALYLFE 187
           K+     ++ KL  L+ L LE   L           +     L  L  S +  G +    
Sbjct: 11  KTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL 70

Query: 188 NSLSSSIYPWLFNISSKLVVLDLDSNLLQGSL---LEPFDRMVSLRTLYLGFNE------ 238
            SL              L  LDL  N L       LE   R  SL+ L L  N       
Sbjct: 71  QSLLQG-----LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125

Query: 239 -------------LEELFLGKNRLNGT----INQWLSRMYKLDALSLSGNSLTGVVTESV 281
                        LE+L LG+NRL G     + + L     L  L+L+ N +      ++
Sbjct: 126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL 185

Query: 282 FSEL---SNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEV 338
              L    NL+ L L++N  T +               L            L +   +EV
Sbjct: 186 AEGLKANCNLEVLDLNNNGLTDEG-----------ASALAET---------LASLKSLEV 225

Query: 339 LDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEG 398
           L++ D  ++D         +  +A   LS N     L  LSL      S  DI+ +  + 
Sbjct: 226 LNLGDNNLTD------AGAAA-LASALLSPNI---SLLTLSL------SCNDITDDGAKD 269

Query: 399 LIPPLPSNASVLNLSR--NKFSESISFL-CSI---NGHKLEFLDLSNN 440
           L   L    S+L L    NKF E  + L        G++LE L + ++
Sbjct: 270 LAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 101 KLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNK-SRDWLRIIDKLPSLRTLNLEH 159
            L+ L LS+             L  LK LDLS  NL   S +       LPSLR+L+L  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAF---SGLPSLRSLDLSG 57

Query: 160 CHL 162
            +L
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 64/221 (28%), Positives = 91/221 (41%), Gaps = 27/221 (12%)

Query: 81  DLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNL-SRLKYLDLSYINLNKS 139
            L  N          +  L  L  L L +      IP  +G L S LK LDLS    NK 
Sbjct: 97  SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSD---NKI 152

Query: 140 RDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLF 199
                 +  LP+L+ L+L    L     SDL  L  + S+L  L L  N +S    P   
Sbjct: 153 ESLPSPLRNLPNLKNLDLSFNDL-----SDLPKLLSNLSNLNNLDLSGNKISD--LPPEI 205

Query: 200 NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSR 259
            + S L  LDL +N +   LL     + +L  L L  N+LE+L            + +  
Sbjct: 206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-----------PESIGN 253

Query: 260 MYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTL 300
           +  L+ L LS N ++ +   S    L+NL+ L L  NS + 
Sbjct: 254 LSNLETLDLSNNQISSI---SSLGSLTNLRELDLSGNSLSN 291

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	789
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
PLN03150	623	hypothetical protein; Provisional	99.56
PLN03150	623	hypothetical protein; Provisional	99.51
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.57
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.49
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.42
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.4
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.21
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.19
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.13
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.09
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.95
PRK15386	426	type III secretion protein GogB; Provisional	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.66
KOG4341	483	consensus F-box protein containing LRR [General fu	97.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.52
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.47
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.4
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.38
KOG4341	483	consensus F-box protein containing LRR [General fu	96.89
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.7
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.81
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.53
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.5
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.46
KOG4308	478	consensus LRR-containing protein [Function unknown	94.66
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.05
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.26
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.13
KOG4308	478	consensus LRR-containing protein [Function unknown	92.77
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.92
smart00370	26	LRR Leucine-rich repeats, outliers.	90.92
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.27
smart00370	26	LRR Leucine-rich repeats, outliers.	89.88
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.88
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.07
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.85

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.3e-71  Score=669.31  Aligned_cols=583  Identities=35%  Similarity=0.523  Sum_probs=476.5

Q ss_pred             HHHHHHHHHHhhcCcCCCCCCCCCCCCCCCCCCCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEe
Q 042537            2 EEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLD   81 (789)
Q Consensus         2 ~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~   81 (789)
                      ++|++||++||+++.+|.+.+.+|.   ..++||.|.||+|++ .++|+.|+|++    +.+.|.+++.|..+++|++|+
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~----~~i~~~~~~~~~~l~~L~~L~   99 (968)
T PLN00113         28 AEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG----KNISGKISSAIFRLPYIQTIN   99 (968)
T ss_pred             HHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC----CCccccCChHHhCCCCCCEEE
Confidence            6899999999999988888899997   577899999999974 57999999999    888999999999999999999


Q ss_pred             CCCCCCCCCCCcccc-cCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCC
Q 042537           82 LSENDFSGSRIPEFI-GSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHC  160 (789)
Q Consensus        82 Ls~n~i~~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n  160 (789)
                      |++|++++. +|..+ ..+++|++|+|++|.+++.+|.  +.+++|++|+|++|.+.+.  +|..++++++|++|++++|
T Consensus       100 Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n  174 (968)
T PLN00113        100 LSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE--IPNDIGSFSSLKVLDLGGN  174 (968)
T ss_pred             CCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc--CChHHhcCCCCCEEECccC
Confidence            999999875 77655 4899999999999999988775  5689999999999999864  6788999999999999999


Q ss_pred             CCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCcc
Q 042537          161 HLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELE  240 (789)
Q Consensus       161 ~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~  240 (789)
                      .+.+..|.  .+.++  ++|++|++++|.+.+.+|..+..+. +|++|++++|.+.+..|..++++++|++|+++     
T Consensus       175 ~l~~~~p~--~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-----  244 (968)
T PLN00113        175 VLVGKIPN--SLTNL--TSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV-----  244 (968)
T ss_pred             cccccCCh--hhhhC--cCCCeeeccCCCCcCcCChHHcCcC-CccEEECcCCccCCcCChhHhcCCCCCEEECc-----
Confidence            98877773  34444  7777777777777766666666554 67777777777776677777777777777666     


Q ss_pred             EEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCc
Q 042537          241 ELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSC  320 (789)
Q Consensus       241 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~  320 (789)
                           +|.+.+.+|..++++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+                    
T Consensus       245 -----~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~--------------------  298 (968)
T PLN00113        245 -----YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSG--------------------  298 (968)
T ss_pred             -----CceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeecc--------------------
Confidence                 5555556666677777777777777776655554 45666666666666666553                    


Q ss_pred             cCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccC
Q 042537          321 QMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLI  400 (789)
Q Consensus       321 ~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~  400 (789)
                          .+|.++..+++|+.|++++|.+.+..|..+..+ ++|+.|++++|.+.+.+|.                       
T Consensus       299 ----~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~-----------------------  350 (968)
T PLN00113        299 ----EIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPK-----------------------  350 (968)
T ss_pred             ----CCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCCh-----------------------
Confidence                556666667777777777777666555544332 2344444444433332222                       


Q ss_pred             CCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcc
Q 042537          401 PPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSI  480 (789)
Q Consensus       401 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  480 (789)
                        .+.                      ..++|+.|++++|++++.+|..+..+++|+.|++++|++.+..|..+..+++|
T Consensus       351 --~l~----------------------~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L  406 (968)
T PLN00113        351 --NLG----------------------KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL  406 (968)
T ss_pred             --HHh----------------------CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence              100                      01678888888888888888888888899999999999988889888889999


Q ss_pred             cEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccC
Q 042537          481 QTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSL  560 (789)
Q Consensus       481 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  560 (789)
                      +.|++++|++++..|..|..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|++.+.+|..+ ..++|+.|++++
T Consensus       407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~  484 (968)
T PLN00113        407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSR  484 (968)
T ss_pred             CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcC
Confidence            9999999999988999999999999999999999988887766 68999999999999998888755 468999999999


Q ss_pred             CcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCcccccc
Q 042537          561 NNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTI  640 (789)
Q Consensus       561 N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  640 (789)
                      |++++..|..+.++++|                                                 +.|++++|++.+.+
T Consensus       485 n~l~~~~~~~~~~l~~L-------------------------------------------------~~L~Ls~N~l~~~~  515 (968)
T PLN00113        485 NQFSGAVPRKLGSLSEL-------------------------------------------------MQLKLSENKLSGEI  515 (968)
T ss_pred             CccCCccChhhhhhhcc-------------------------------------------------CEEECcCCcceeeC
Confidence            99999988887776665                                                 89999999999999


Q ss_pred             chhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCcccc
Q 042537          641 PEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQS  720 (789)
Q Consensus       641 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~  720 (789)
                      |+.+..+++|++|+|++|.+++.+|..++.+++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|..+++.+
T Consensus       516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~  595 (968)
T PLN00113        516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA  595 (968)
T ss_pred             ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCC
Q 042537          721 FNASVYAGNPELCGLP  736 (789)
Q Consensus       721 ~~~~~~~~n~~lc~~~  736 (789)
                      +....+.|||.+|+.+
T Consensus       596 ~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        596 INASAVAGNIDLCGGD  611 (968)
T ss_pred             cChhhhcCCccccCCc
Confidence            9999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-56  Score=541.29  Aligned_cols=518  Identities=32%  Similarity=0.463  Sum_probs=391.5

Q ss_pred             CCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCcccc-CCCCCcEEeccCccCCCCcchHHhhCCCCCCC
Q 042537           75 YHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLG-NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR  153 (789)
Q Consensus        75 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~  153 (789)
                      .+++.|++++|.+++. .+..+..+++|++|+|++|++.+.+|..+. ++++|++|+|++|++++.  +|.  +.+++|+
T Consensus        69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~--~p~--~~l~~L~  143 (968)
T PLN00113         69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS--IPR--GSIPNLE  143 (968)
T ss_pred             CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc--cCc--cccCCCC
Confidence            3678888888888775 677788888888888888888777776644 778888888888877653  232  3466677


Q ss_pred             EEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEE
Q 042537          154 TLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLY  233 (789)
Q Consensus       154 ~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  233 (789)
                      +|++++|.+.+..|  ..+.++  ++|++|++++|.+.+.+|..+.++. +|++|++++|.+.+..|..++++++|+.|+
T Consensus       144 ~L~Ls~n~~~~~~p--~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        144 TLDLSNNMLSGEIP--NDIGSF--SSLKVLDLGGNVLVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             EEECcCCcccccCC--hHHhcC--CCCCEEECccCcccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            77777776665555  223333  5555555555555544554444433 455555555555544555555555555555


Q ss_pred             CCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccce
Q 042537          234 LGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLI  313 (789)
Q Consensus       234 L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~  313 (789)
                      ++          +|.+.+.+|..++++++|++|++++|.+.+                         ..+..+..+.+|+
T Consensus       219 L~----------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------------------------~~p~~l~~l~~L~  263 (968)
T PLN00113        219 LG----------YNNLSGEIPYEIGGLTSLNHLDLVYNNLTG-------------------------PIPSSLGNLKNLQ  263 (968)
T ss_pred             Cc----------CCccCCcCChhHhcCCCCCEEECcCceecc-------------------------ccChhHhCCCCCC
Confidence            44          333444444445555555555555555544                         4444444444444


Q ss_pred             eEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccC
Q 042537          314 IILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISS  393 (789)
Q Consensus       314 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~  393 (789)
                      .|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+... ++|+.|++++|.+.+.+|                 
T Consensus       264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~-----------------  325 (968)
T PLN00113        264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIP-----------------  325 (968)
T ss_pred             EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCC-----------------
Confidence            44555555555778888899999999999999988777665432 344444444444443222                 


Q ss_pred             CcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCcc
Q 042537          394 NYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKS  473 (789)
Q Consensus       394 n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  473 (789)
                              ..+..                      +++|+.|++++|.+++.+|..+..+++|+.|++++|++.+..|..
T Consensus       326 --------~~~~~----------------------l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        326 --------VALTS----------------------LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             --------hhHhc----------------------CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence                    21111                      178999999999999899999999999999999999999999999


Q ss_pred             ccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcC
Q 042537          474 MGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYI  553 (789)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  553 (789)
                      +..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.+|..+. .+++|+.|++++|++++.++..+..+++|
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  454 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSL  454 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCC
Confidence            99999999999999999999999999999999999999999999998776 79999999999999999999989999999


Q ss_pred             ceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEccc
Q 042537          554 QILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSM  633 (789)
Q Consensus       554 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  633 (789)
                      +.|++++|++.+..|..+. .                                                 +.|+.||+++
T Consensus       455 ~~L~L~~n~~~~~~p~~~~-~-------------------------------------------------~~L~~L~ls~  484 (968)
T PLN00113        455 QMLSLARNKFFGGLPDSFG-S-------------------------------------------------KRLENLDLSR  484 (968)
T ss_pred             cEEECcCceeeeecCcccc-c-------------------------------------------------ccceEEECcC
Confidence            9999999999987776442 1                                                 2358999999


Q ss_pred             CccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCC
Q 042537          634 NKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP  713 (789)
Q Consensus       634 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  713 (789)
                      |++++.+|..|.++++|+.|+|++|++++.+|..+..+++|++|+|++|.+++.+|..|..+++|++||+++|+++|.+|
T Consensus       485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  564 (968)
T PLN00113        485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP  564 (968)
T ss_pred             CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CccccccccccCCCCCCCCCC
Q 042537          714 LG-TQLQSFNASVYAGNPELCGLP  736 (789)
Q Consensus       714 ~~-~~~~~~~~~~~~~n~~lc~~~  736 (789)
                      .. ..+..+....+.+|+..+..|
T Consensus       565 ~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        565 KNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             hhHhcCcccCEEeccCCcceeeCC
Confidence            75 345556667788888776544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3e-39  Score=327.80  Aligned_cols=232  Identities=23%  Similarity=0.220  Sum_probs=122.2

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      .+|..|.|++|+++...+..|.++++|+.|+|..|+|....--+|.++++|+.|.+..|.|.....+.|..|.++++|+|
T Consensus       197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL  276 (873)
T ss_pred             chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence            34555555555555444555555555555555555555333345555555555555555555555555555555555555


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      +.|+++..-..|++ ++.+|+.|++++|.|..+.+......++|+.|+|++|+++...+..|..+..|            
T Consensus       277 ~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L------------  343 (873)
T KOG4194|consen  277 ETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL------------  343 (873)
T ss_pred             ccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh------------
Confidence            55555533334444 55555555555555555555555555555555555555555555554444433            


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCc---
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITP---  666 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---  666 (789)
                                                           ++|.|++|.+...-...|..+++|++|||++|.|+..|.+   
T Consensus       344 -------------------------------------e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~  386 (873)
T KOG4194|consen  344 -------------------------------------EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV  386 (873)
T ss_pred             -------------------------------------hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence                                                 4455555555433334445555555555555555544432   


Q ss_pred             ccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccccc
Q 042537          667 KIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGK  711 (789)
Q Consensus       667 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  711 (789)
                      .|..|++|+.|+|.+|+|..+...+|..++.|+.||+.+|.+...
T Consensus       387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI  431 (873)
T KOG4194|consen  387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI  431 (873)
T ss_pred             hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence            244455555555555555544444555555555555555555433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-39  Score=328.80  Aligned_cols=365  Identities=26%  Similarity=0.289  Sum_probs=240.9

Q ss_pred             CCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEE
Q 042537           77 LRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLN  156 (789)
Q Consensus        77 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~  156 (789)
                      -+.||+++|+++.+ -+.+|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+++..  +.+..++.|+.||
T Consensus        80 t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~s--e~L~~l~alrslD  155 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTS--EELSALPALRSLD  155 (873)
T ss_pred             eeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccH--HHHHhHhhhhhhh
Confidence            35677888777765 5666777778888888777777 567655666667777777777777644  6677777777777


Q ss_pred             cCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCC
Q 042537          157 LEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGF  236 (789)
Q Consensus       157 L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  236 (789)
                      ||.|.|+.+.-..+.                             ...++++|+|++|.|+.+....|..+.+|..|.|+ 
T Consensus       156 LSrN~is~i~~~sfp-----------------------------~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs-  205 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFP-----------------------------AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS-  205 (873)
T ss_pred             hhhchhhcccCCCCC-----------------------------CCCCceEEeeccccccccccccccccchheeeecc-
Confidence            777776554331111                             11267777777777777777777777777777777 


Q ss_pred             CCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEe
Q 042537          237 NELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIIL  316 (789)
Q Consensus       237 n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~  316 (789)
                               +|+++...+..|.++++|+.|+|..|+|. .+....|.++++|+.|.|..|+|.......|..+.+++.|+
T Consensus       206 ---------rNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~  275 (873)
T KOG4194|consen  206 ---------RNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN  275 (873)
T ss_pred             ---------cCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence                     55555566677777888888888888776 55445677788888888888877766666666666666666


Q ss_pred             ccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcc
Q 042537          317 LGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYF  396 (789)
Q Consensus       317 l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l  396 (789)
                      |+.|++...-..|+.+++.|+.|++|+|.|..+.++                          .+..+             
T Consensus       276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d--------------------------~Wsft-------------  316 (873)
T KOG4194|consen  276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID--------------------------SWSFT-------------  316 (873)
T ss_pred             cccchhhhhhcccccccchhhhhccchhhhheeecc--------------------------hhhhc-------------
Confidence            666665555556666666666666666665533222                          11111             


Q ss_pred             cccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccc
Q 042537          397 EGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGF  476 (789)
Q Consensus       397 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  476 (789)
                                                       ++|++|+|++|+|+...+.+|..+..|++|+|++|.+...-..+|..
T Consensus       317 ---------------------------------qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~  363 (873)
T KOG4194|consen  317 ---------------------------------QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG  363 (873)
T ss_pred             ---------------------------------ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence                                             45666666666666556666666666666666666666555556666


Q ss_pred             cCcccEEEccCCeeeeeCCc---CccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcC
Q 042537          477 LHSIQTLSLYNNSLIGELPS---FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYI  553 (789)
Q Consensus       477 l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  553 (789)
                      +++|++|||++|.+...+.+   .|.++++|+.|++.+|+++ .+|...|+++++|+.|+|.+|.|..+-|.+|..+ .|
T Consensus       364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L  441 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL  441 (873)
T ss_pred             hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hh
Confidence            66666666666666554432   4566667777777777776 6666666667777777777777766666666666 66


Q ss_pred             ceEecc
Q 042537          554 QILDLS  559 (789)
Q Consensus       554 ~~L~Ls  559 (789)
                      +.|-+.
T Consensus       442 k~Lv~n  447 (873)
T KOG4194|consen  442 KELVMN  447 (873)
T ss_pred             hhhhhc
Confidence            665554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.4e-41  Score=330.18  Aligned_cols=476  Identities=28%  Similarity=0.361  Sum_probs=305.8

Q ss_pred             CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCC
Q 042537           74 LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR  153 (789)
Q Consensus        74 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~  153 (789)
                      -.-++.|++++|.+.  .+...+.++..|++|++++|++. ..|.+++.+..++.|+.++|++..   +|+.++.+++|+
T Consensus        44 qv~l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~---lp~~i~s~~~l~  117 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE---LPEQIGSLISLV  117 (565)
T ss_pred             hcchhhhhhccCchh--hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh---ccHHHhhhhhhh
Confidence            345667777777776  34556677777777777777777 567777777777777777777776   567777777777


Q ss_pred             EEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEE
Q 042537          154 TLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLY  233 (789)
Q Consensus       154 ~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  233 (789)
                      .++.++|.+....++   ++.+  ..+..++..+|+++ ..|++++.+. ++..+++.+|++....|..+. ++.|++||
T Consensus       118 ~l~~s~n~~~el~~~---i~~~--~~l~dl~~~~N~i~-slp~~~~~~~-~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld  189 (565)
T KOG0472|consen  118 KLDCSSNELKELPDS---IGRL--LDLEDLDATNNQIS-SLPEDMVNLS-KLSKLDLEGNKLKALPENHIA-MKRLKHLD  189 (565)
T ss_pred             hhhccccceeecCch---HHHH--hhhhhhhccccccc-cCchHHHHHH-HHHHhhccccchhhCCHHHHH-HHHHHhcc
Confidence            777777777655442   2233  56677777777776 5666666666 788888888888866555554 88888888


Q ss_pred             CCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccce
Q 042537          234 LGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLI  313 (789)
Q Consensus       234 L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~  313 (789)
                      ...|-++           .+|+.++.+.+|+.|+|..|++. .+|.  |.+|..|++++++.|.|.              
T Consensus       190 ~~~N~L~-----------tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~--------------  241 (565)
T KOG0472|consen  190 CNSNLLE-----------TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIE--------------  241 (565)
T ss_pred             cchhhhh-----------cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHH--------------
Confidence            8644333           45777888888888888888887 7775  888888888888888776              


Q ss_pred             eEeccCccCCCCCchhc-cCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEcc
Q 042537          314 IILLGSCQMGPHFPKWL-QTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDIS  392 (789)
Q Consensus       314 ~L~l~~~~~~~~~~~~l-~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~  392 (789)
                                 .+|... ..++++..||+.+|++++ .|..+.- ..+|..||+++|.++ .+|. .++.+         
T Consensus       242 -----------~lpae~~~~L~~l~vLDLRdNklke-~Pde~cl-LrsL~rLDlSNN~is-~Lp~-sLgnl---------  297 (565)
T KOG0472|consen  242 -----------MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICL-LRSLERLDLSNNDIS-SLPY-SLGNL---------  297 (565)
T ss_pred             -----------hhHHHHhcccccceeeecccccccc-CchHHHH-hhhhhhhcccCCccc-cCCc-ccccc---------
Confidence                       344433 356666677777776663 3333332 224555555555554 2332 22222         


Q ss_pred             CCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCccccc-----CCCCcE----EEcCC
Q 042537          393 SNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQ-----FDRLAV----LSLAN  463 (789)
Q Consensus       393 ~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~----L~L~~  463 (789)
                                                            .|+.|.+.+|.+..+-.+.+.+     ++.|+.    =-++.
T Consensus       298 --------------------------------------hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~  339 (565)
T KOG0472|consen  298 --------------------------------------HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ  339 (565)
T ss_pred             --------------------------------------eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence                                                  2333444444332110000000     000100    00000


Q ss_pred             Cc---------CcccCCccccccCcccEEEccCCeeeeeCCcCccCCC--CCcEEeCCCCcccccCchhhhhcCCCCc-E
Q 042537          464 NF---------FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCS--QLILMDLGKNGLSGEIPTWIGEGLPKLV-V  531 (789)
Q Consensus       464 n~---------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~ls~n~l~~~~p~~~~~~l~~L~-~  531 (789)
                      -.         ..+..| ....+.+.+.|++++-+++.+..+.|..-.  -....+++.|++. ++|..+.. +..+. .
T Consensus       340 se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~  416 (565)
T KOG0472|consen  340 SEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE-LKELVTD  416 (565)
T ss_pred             CcccccccCCCCCCccc-chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH-HHHHHHH
Confidence            00         000111 122345667777777777743333333222  2667788888887 77776652 33333 3


Q ss_pred             EEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEE
Q 042537          532 LSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLT  611 (789)
Q Consensus       532 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (789)
                      +.+++|.+. .+|..++.+++|..|++++|.+. .+|..++.+..|                                  
T Consensus       417 l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L----------------------------------  460 (565)
T KOG0472|consen  417 LVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL----------------------------------  460 (565)
T ss_pred             HHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhh----------------------------------
Confidence            445555544 66777778888888888887776 456555555444                                  


Q ss_pred             eeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchh
Q 042537          612 WKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSS  691 (789)
Q Consensus       612 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  691 (789)
                                     +.||+|+|++. .+|..+..+..++.+-.++|++....|..+.+|.+|..|||.+|.+. .+|..
T Consensus       461 ---------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~  523 (565)
T KOG0472|consen  461 ---------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI  523 (565)
T ss_pred             ---------------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh
Confidence                           78888888887 78888777777777777778888666666888888888888888888 67778


Q ss_pred             hhcCCCCCeEeccCCccc
Q 042537          692 LCQLSRLSVMNLSYNNLS  709 (789)
Q Consensus       692 l~~l~~L~~L~ls~N~l~  709 (789)
                      ++++++|++|++.+|+|+
T Consensus       524 LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  524 LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hccccceeEEEecCCccC
Confidence            888888999999988887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.9e-38  Score=308.36  Aligned_cols=480  Identities=25%  Similarity=0.286  Sum_probs=325.8

Q ss_pred             ccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCcccccccccc
Q 042537           96 IGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNF  175 (789)
Q Consensus        96 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  175 (789)
                      +..-..|+.|.+++|.+. .+.+.+.++..|.+|++++|++..   +|.+++.+..++.++.++|++...++.   ....
T Consensus        41 wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~---lp~aig~l~~l~~l~vs~n~ls~lp~~---i~s~  113 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ---LPAAIGELEALKSLNVSHNKLSELPEQ---IGSL  113 (565)
T ss_pred             hhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhhh---CCHHHHHHHHHHHhhcccchHhhccHH---Hhhh
Confidence            444567888888888887 555678888888888888888887   677888888888888888887654432   2222


Q ss_pred             CCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchh
Q 042537          176 STSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQ  255 (789)
Q Consensus       176 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~  255 (789)
                        .++.+++.++|.+. .++++++... .++.++..+|++.. .|+++..+.+|..+++.+          |++....|.
T Consensus       114 --~~l~~l~~s~n~~~-el~~~i~~~~-~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~----------n~l~~l~~~  178 (565)
T KOG0472|consen  114 --ISLVKLDCSSNELK-ELPDSIGRLL-DLEDLDATNNQISS-LPEDMVNLSKLSKLDLEG----------NKLKALPEN  178 (565)
T ss_pred             --hhhhhhhcccccee-ecCchHHHHh-hhhhhhcccccccc-CchHHHHHHHHHHhhccc----------cchhhCCHH
Confidence              56666666666665 5566666665 66666666666663 345555555555555553          333333333


Q ss_pred             hhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCC
Q 042537          256 WLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQ  335 (789)
Q Consensus       256 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  335 (789)
                      .+. ++.|++||.-.|.+. .+|+ .++.+.+|..|++..|++.                         ..| .|.++..
T Consensus       179 ~i~-m~~L~~ld~~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~-------------------------~lP-ef~gcs~  229 (565)
T KOG0472|consen  179 HIA-MKRLKHLDCNSNLLE-TLPP-ELGGLESLELLYLRRNKIR-------------------------FLP-EFPGCSL  229 (565)
T ss_pred             HHH-HHHHHhcccchhhhh-cCCh-hhcchhhhHHHHhhhcccc-------------------------cCC-CCCccHH
Confidence            333 555666666666554 4454 2555555555555555554                         334 4555666


Q ss_pred             ccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCC
Q 042537          336 IEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRN  415 (789)
Q Consensus       336 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n  415 (789)
                      |++++++.|.|. ..|......                                              ++++.+||+++|
T Consensus       230 L~Elh~g~N~i~-~lpae~~~~----------------------------------------------L~~l~vLDLRdN  262 (565)
T KOG0472|consen  230 LKELHVGENQIE-MLPAEHLKH----------------------------------------------LNSLLVLDLRDN  262 (565)
T ss_pred             HHHHHhcccHHH-hhHHHHhcc----------------------------------------------cccceeeecccc
Confidence            666666665554 223222211                                              234555666666


Q ss_pred             cCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccC--cccEEE-------cc
Q 042537          416 KFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLH--SIQTLS-------LY  486 (789)
Q Consensus       416 ~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~-------L~  486 (789)
                      ++.+.+...|..  .+|++||+|+|.|+ ..|..++++ .|+.|.+.+|.+..+-.+.+.+-+  -|++|.       ++
T Consensus       263 klke~Pde~clL--rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS  338 (565)
T KOG0472|consen  263 KLKEVPDEICLL--RSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLS  338 (565)
T ss_pred             ccccCchHHHHh--hhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCC
Confidence            666666666665  78999999999998 677788888 899999999988743222222111  122221       11


Q ss_pred             CCeee----ee-CCcC---ccCCCCCcEEeCCCCcccccCchhhhhcCCC---CcEEEcCCCcccccCCCCccCCCcCce
Q 042537          487 NNSLI----GE-LPSF---FKSCSQLILMDLGKNGLSGEIPTWIGEGLPK---LVVLSLKSNKFHGNIPFQVCQLSYIQI  555 (789)
Q Consensus       487 ~n~l~----~~-~~~~---~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~  555 (789)
                      .-.-.    .. .+..   .....+.+.|++++-+++ .+|..+|+ ...   ....+++.|++. .+|..+..+..+.+
T Consensus       339 ~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfe-a~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT  415 (565)
T KOG0472|consen  339 QSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFE-AAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT  415 (565)
T ss_pred             CCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHH-HhhhcceEEEecccchHh-hhhhhhHHHHHHHH
Confidence            11000    00 1111   223456788999999998 89988885 333   678889999987 67777777766655


Q ss_pred             E-eccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccC
Q 042537          556 L-DLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMN  634 (789)
Q Consensus       556 L-~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  634 (789)
                      . .+++|.+ +.+|..+..++++                                                 +.|+|++|
T Consensus       416 ~l~lsnn~i-sfv~~~l~~l~kL-------------------------------------------------t~L~L~NN  445 (565)
T KOG0472|consen  416 DLVLSNNKI-SFVPLELSQLQKL-------------------------------------------------TFLDLSNN  445 (565)
T ss_pred             HHHhhcCcc-ccchHHHHhhhcc-------------------------------------------------eeeecccc
Confidence            4 4444444 4566555555544                                                 89999999


Q ss_pred             ccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537          635 KLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       635 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  714 (789)
                      -+. .+|.+++.+..|+.||+|+|++. .+|..+-.+..+|.+-.++|++....|+.+.++.+|.+||+.+|.+....|.
T Consensus       446 ~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~  523 (565)
T KOG0472|consen  446 LLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI  523 (565)
T ss_pred             hhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh
Confidence            998 89999999999999999999998 8899988888999999999999988888899999999999999999866666


Q ss_pred             CCccccccccccCCCCCC
Q 042537          715 GTQLQSFNASVYAGNPEL  732 (789)
Q Consensus       715 ~~~~~~~~~~~~~~n~~l  732 (789)
                      -+....+....+.|||.-
T Consensus       524 LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  524 LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hccccceeEEEecCCccC
Confidence            678888888889999764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-36  Score=322.11  Aligned_cols=483  Identities=23%  Similarity=0.260  Sum_probs=333.5

Q ss_pred             EecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEE
Q 042537          105 LSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALY  184 (789)
Q Consensus       105 L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~  184 (789)
                      +|++...+. .+|..+-.-..++.|+++.|-+...+ + +.+.+.-+|+.||+++|++.                     
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~p-l-~~~~~~v~L~~l~lsnn~~~---------------------   58 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRP-L-EFVEKRVKLKSLDLSNNQIS---------------------   58 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCc-h-HHhhheeeeEEeeccccccc---------------------
Confidence            556666665 55655555455677777766655532 1 23333344555555555443                     


Q ss_pred             ccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCC
Q 042537          185 LFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLD  264 (789)
Q Consensus       185 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~  264 (789)
                              ..|..+-... +|+.|+++.|.|. ..|.+..++.+|+++.|.+|+++           ..|..+..+.+|+
T Consensus        59 --------~fp~~it~l~-~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-----------~lP~~~~~lknl~  117 (1081)
T KOG0618|consen   59 --------SFPIQITLLS-HLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-----------SLPASISELKNLQ  117 (1081)
T ss_pred             --------cCCchhhhHH-HHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-----------cCchhHHhhhccc
Confidence                    3344444444 7888888888887 45577788888888888755544           3577788888888


Q ss_pred             EEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCC
Q 042537          265 ALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDA  344 (789)
Q Consensus       265 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n  344 (789)
                      +|+++.|.+. .+|. .+..+..+..+..++|.-...    +.. ..++.+++..+.+.+.++.....++.  .+|+.+|
T Consensus       118 ~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~----lg~-~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N  188 (1081)
T KOG0618|consen  118 YLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQR----LGQ-TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN  188 (1081)
T ss_pred             ccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhh----hcc-ccchhhhhhhhhcccchhcchhhhhe--eeecccc
Confidence            8888888887 6776 578888888888888821111    111 12677777777777777766666665  6888888


Q ss_pred             cCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCC-CCCCcEEEcCCCcCccccch
Q 042537          345 GISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPL-PSNASVLNLSRNKFSESISF  423 (789)
Q Consensus       345 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~i~~~~~~  423 (789)
                      .+....    ....+.|+.+....|++.. +    -...++++.|+.++|.++...+.. +.+++++++++|++++.+..
T Consensus       189 ~~~~~d----ls~~~~l~~l~c~rn~ls~-l----~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~w  259 (1081)
T KOG0618|consen  189 EMEVLD----LSNLANLEVLHCERNQLSE-L----EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEW  259 (1081)
T ss_pred             hhhhhh----hhhccchhhhhhhhcccce-E----EecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHH
Confidence            876211    1233577777777777662 1    122345778888888887554433 67788888888888877744


Q ss_pred             hcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCC-
Q 042537          424 LCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCS-  502 (789)
Q Consensus       424 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-  502 (789)
                      .+..  .+|+.++..+|.++ .+|..+....+|+.|.+.+|.+. .+|......++|++|+|..|++....+..|.-.. 
T Consensus       260 i~~~--~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~  335 (1081)
T KOG0618|consen  260 IGAC--ANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA  335 (1081)
T ss_pred             HHhc--ccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence            4433  77888888888885 67777777788888888888887 4566667778888888888888744333333333 


Q ss_pred             CCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCC
Q 042537          503 QLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSS  582 (789)
Q Consensus       503 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  582 (789)
                      +|+.|+.+.|++. ..|..-.+..+.|+.|++.+|.++...-..+.+...|++|+|++|++......++.++..|     
T Consensus       336 ~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L-----  409 (1081)
T KOG0618|consen  336 SLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL-----  409 (1081)
T ss_pred             HHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHh-----
Confidence            3677777878777 5664433456778888888888887766677788888888888888875554555555544     


Q ss_pred             CccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCccee
Q 042537          583 SNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTG  662 (789)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  662 (789)
                                                                  +.|+||+|+++ .+|+.+..+..|++|...+|++. 
T Consensus       410 --------------------------------------------eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-  443 (1081)
T KOG0618|consen  410 --------------------------------------------EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-  443 (1081)
T ss_pred             --------------------------------------------HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-
Confidence                                                        78889999988 78888888888999988888887 


Q ss_pred             ecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCc
Q 042537          663 QITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNN  707 (789)
Q Consensus       663 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  707 (789)
                      ..| .+.++++|+.+|+|.|+++...-..-..-+.|++||+++|.
T Consensus       444 ~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  444 SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            566 78888899999999998875433222222788999999886

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-35  Score=313.43  Aligned_cols=420  Identities=25%  Similarity=0.311  Sum_probs=257.1

Q ss_pred             cEEEEEcCCCCCCCCcccccC-ccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCC
Q 042537           48 HVIVLDLQVLVHSEPLKGTIS-PSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRL  126 (789)
Q Consensus        48 ~v~~l~L~~~~~~~~l~~~l~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L  126 (789)
                      .++.|++..    +.+. ..| +.+.+.-+|+.||+++|.+.  .+|..+..+.+|+.|+++.|.|. ..|.+..++.+|
T Consensus        22 ~~~~ln~~~----N~~l-~~pl~~~~~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l   93 (1081)
T KOG0618|consen   22 ALQILNLRR----NSLL-SRPLEFVEKRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNL   93 (1081)
T ss_pred             HHHhhhccc----cccc-cCchHHhhheeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcc
Confidence            366777765    2221 212 23344445888888888887  57888888888888888888888 677888888888


Q ss_pred             cEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCc
Q 042537          127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLV  206 (789)
Q Consensus       127 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  206 (789)
                      ++|.|.+|.+..   +|..+..+.+|+.|++++|.+...+.   .+..+  +.+.++..++|.....+    .. . .++
T Consensus        94 ~~lnL~~n~l~~---lP~~~~~lknl~~LdlS~N~f~~~Pl---~i~~l--t~~~~~~~s~N~~~~~l----g~-~-~ik  159 (1081)
T KOG0618|consen   94 QYLNLKNNRLQS---LPASISELKNLQYLDLSFNHFGPIPL---VIEVL--TAEEELAASNNEKIQRL----GQ-T-SIK  159 (1081)
T ss_pred             hhheeccchhhc---CchhHHhhhcccccccchhccCCCch---hHHhh--hHHHHHhhhcchhhhhh----cc-c-cch
Confidence            888888888877   67788888888888888888754332   22222  56667777777221111    11 1 377


Q ss_pred             EEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCC
Q 042537          207 VLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELS  286 (789)
Q Consensus       207 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  286 (789)
                      .+++..|.+.+.++.++..+..  .|+|.+|.+..++++             .+.+|+.|....|++.. +.    -.-+
T Consensus       160 ~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls-------------~~~~l~~l~c~rn~ls~-l~----~~g~  219 (1081)
T KOG0618|consen  160 KLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLS-------------NLANLEVLHCERNQLSE-LE----ISGP  219 (1081)
T ss_pred             hhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhh-------------hccchhhhhhhhcccce-EE----ecCc
Confidence            7788888777777777776666  678887766655443             45677777777777762 21    2346


Q ss_pred             CCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeee
Q 042537          287 NLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNL  366 (789)
Q Consensus       287 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l  366 (789)
                      +|+.|+.++|.++....  ..-..++++++++.+++. .+|.|+..+.+|+.++..+|.++ ..|..+... .+|+.|.+
T Consensus       220 ~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~-~~L~~l~~  294 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRI-TSLVSLSA  294 (1081)
T ss_pred             chheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhh-hhHHHHHh
Confidence            77778888777762211  112234555555555554 44466666666666666666663 223222221 13333333


Q ss_pred             ccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCC
Q 042537          367 SNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRL  446 (789)
Q Consensus       367 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  446 (789)
                      .+|.+.                         ..                     ++....  .+.|++|+|..|++....
T Consensus       295 ~~nel~-------------------------yi---------------------p~~le~--~~sL~tLdL~~N~L~~lp  326 (1081)
T KOG0618|consen  295 AYNELE-------------------------YI---------------------PPFLEG--LKSLRTLDLQSNNLPSLP  326 (1081)
T ss_pred             hhhhhh-------------------------hC---------------------CCcccc--cceeeeeeehhccccccc
Confidence            333332                         11                     111111  156777777777776333


Q ss_pred             CcccccCCC-CcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhc
Q 042537          447 PDCWMQFDR-LAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEG  525 (789)
Q Consensus       447 ~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~  525 (789)
                      +..|.-... |..|+.+.|++.......=...+.|+.|++.+|.++...-..+.+.+.|+.|+|++|++. .+|+....+
T Consensus       327 ~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k  405 (1081)
T KOG0618|consen  327 DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK  405 (1081)
T ss_pred             hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhc
Confidence            323333322 666667777766322111123456777777777777665566677777777777777776 777766666


Q ss_pred             CCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccc
Q 042537          526 LPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNIS  564 (789)
Q Consensus       526 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  564 (789)
                      ++.|++|+|++|+++ .+|..+..+..|++|...+|++.
T Consensus       406 le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  406 LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence            677777777777776 45566666666666666666554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=9.6e-33  Score=282.31  Aligned_cols=368  Identities=28%  Similarity=0.388  Sum_probs=203.0

Q ss_pred             CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCC
Q 042537           74 LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR  153 (789)
Q Consensus        74 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~  153 (789)
                      ++-.|-.|+++|.++|..+|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++..+   -..++.++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v---hGELs~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV---HGELSDLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh---hhhhccchhhH
Confidence            4455666777777776567777777777777777777666 5677777777777777777776653   34566666666


Q ss_pred             EEEcCCCCCCCC-ccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEE
Q 042537          154 TLNLEHCHLPPI-IPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTL  232 (789)
Q Consensus       154 ~L~L~~n~l~~~-~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  232 (789)
                      .+.+.+|++... +|  ..+..+  ..|+.|+|++|++. .+|..+-... ++-+|+||+|+|..+...-|.++..|-.|
T Consensus        82 sv~~R~N~LKnsGiP--~diF~l--~dLt~lDLShNqL~-EvP~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIP--TDIFRL--KDLTILDLSHNQLR-EVPTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFL  155 (1255)
T ss_pred             HHhhhccccccCCCC--chhccc--ccceeeecchhhhh-hcchhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhh
Confidence            666666665321 11  111111  33333333333333 3333333222 44555555555554444444455555555


Q ss_pred             ECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccc
Q 042537          233 YLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQL  312 (789)
Q Consensus       233 ~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L  312 (789)
                      ||++|+|+.           +|..+..+..|++|+|++|.+. ......+..+++|+.|++++.+-+             
T Consensus       156 DLS~NrLe~-----------LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRT-------------  210 (1255)
T KOG0444|consen  156 DLSNNRLEM-----------LPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRT-------------  210 (1255)
T ss_pred             ccccchhhh-----------cCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccch-------------
Confidence            555333332           2333444445555555555443 111112333334444444443221             


Q ss_pred             eeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEcc
Q 042537          313 IIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDIS  392 (789)
Q Consensus       313 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~  392 (789)
                                ...+|..+..+.+|..+|+|.|.+. ..|+.+... ++|+.|++++|+++                    
T Consensus       211 ----------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l-~~LrrLNLS~N~it--------------------  258 (1255)
T KOG0444|consen  211 ----------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL-RNLRRLNLSGNKIT--------------------  258 (1255)
T ss_pred             ----------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhh-hhhheeccCcCcee--------------------
Confidence                      1255666667777777777777665 444444432 24444444444443                    


Q ss_pred             CCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcc-cCC
Q 042537          393 SNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSG-KIP  471 (789)
Q Consensus       393 ~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~  471 (789)
                                                ........+  .+|++|++|.|+++ .+|.++++++.|+.|.+.+|+++- -+|
T Consensus       259 --------------------------eL~~~~~~W--~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP  309 (1255)
T KOG0444|consen  259 --------------------------ELNMTEGEW--ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP  309 (1255)
T ss_pred             --------------------------eeeccHHHH--hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc
Confidence                                      111111111  45666667777666 666677777777777777776542 356


Q ss_pred             ccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCccc
Q 042537          472 KSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH  540 (789)
Q Consensus       472 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  540 (789)
                      ..++.+..|+.+..++|.+. ..|+.++.|..|+.|.|+.|++. .+|+.+. -++.|+.||+..|.-.
T Consensus       310 SGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  310 SGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh-hcCCcceeeccCCcCc
Confidence            66666667777777776665 66667777777777777777766 6676665 4667777777766543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2e-32  Score=279.97  Aligned_cols=363  Identities=26%  Similarity=0.374  Sum_probs=223.8

Q ss_pred             CCcEEEccCCCCc-ccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhh
Q 042537          204 KLVVLDLDSNLLQ-GSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVF  282 (789)
Q Consensus       204 ~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  282 (789)
                      -.+-.|+++|.++ +..|....++++++.|.|...+|.           .+|+.++.+.+|++|.+++|++. .+.. .+
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-----------~vPeEL~~lqkLEHLs~~HN~L~-~vhG-EL   74 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-----------QVPEELSRLQKLEHLSMAHNQLI-SVHG-EL   74 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-----------hChHHHHHHhhhhhhhhhhhhhH-hhhh-hh
Confidence            4566777777776 456677777777777777644443           24666777777777777777766 2222 25


Q ss_pred             hcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCC
Q 042537          283 SELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIA  362 (789)
Q Consensus       283 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~  362 (789)
                      ..++.|+.+++..|.+...                       -+|..+..+..|+.||+|+|++.+              
T Consensus        75 s~Lp~LRsv~~R~N~LKns-----------------------GiP~diF~l~dLt~lDLShNqL~E--------------  117 (1255)
T KOG0444|consen   75 SDLPRLRSVIVRDNNLKNS-----------------------GIPTDIFRLKDLTILDLSHNQLRE--------------  117 (1255)
T ss_pred             ccchhhHHHhhhccccccC-----------------------CCCchhcccccceeeecchhhhhh--------------
Confidence            5666666666666655421                       344445555555555555555542              


Q ss_pred             eeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCcc
Q 042537          363 DFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNIL  442 (789)
Q Consensus       363 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l  442 (789)
                                  .|. .+..                     ..++..|++++|+|..++...+. .++.|-.||||+|++
T Consensus       118 ------------vP~-~LE~---------------------AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen  118 ------------VPT-NLEY---------------------AKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRL  162 (1255)
T ss_pred             ------------cch-hhhh---------------------hcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchh
Confidence                        121 1111                     23444555666665554443332 226677778888887


Q ss_pred             ccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeee-eeCCcCccCCCCCcEEeCCCCcccccCchh
Q 042537          443 SGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLI-GELPSFFKSCSQLILMDLGKNGLSGEIPTW  521 (789)
Q Consensus       443 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~  521 (789)
                      . .+|.....+..|++|+|++|.+.-..-..+..+++|+.|.+++.+=+ ..+|..+..+.+|..+|+|.|.+. .+|+.
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            6 56666777778888888888765433334455667777777765432 346777777888888888888887 77877


Q ss_pred             hhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCccccccccccc
Q 042537          522 IGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFL  601 (789)
Q Consensus       522 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  601 (789)
                      ++ .+++|+.|+|++|+|+ .+......+.+|++|++|.|+++ ..|.++..++.|                        
T Consensus       241 ly-~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL------------------------  293 (1255)
T KOG0444|consen  241 LY-KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL------------------------  293 (1255)
T ss_pred             Hh-hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHH------------------------
Confidence            77 5788888888888887 44445566777888888888887 677777776666                        


Q ss_pred             ccccceeEEEeeccccccccccCceeEEEcccCcccc-ccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCC
Q 042537          602 ESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSG-TIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLS  680 (789)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  680 (789)
                                               +.|++.+|+++- -+|..++.+.+|+++..++|++. ..|+.+..+..|+.|.|+
T Consensus       294 -------------------------~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~  347 (1255)
T KOG0444|consen  294 -------------------------TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLD  347 (1255)
T ss_pred             -------------------------HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccc
Confidence                                     444455555432 35555555555555555555554 555555555555555555


Q ss_pred             CCcccccCchhhhcCCCCCeEeccCCc
Q 042537          681 QNQFVGGIPSSLCQLSRLSVMNLSYNN  707 (789)
Q Consensus       681 ~N~l~~~~p~~l~~l~~L~~L~ls~N~  707 (789)
                      +|++. .+|+++.-|+.|+.||+..|+
T Consensus       348 ~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  348 HNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             cccee-echhhhhhcCCcceeeccCCc
Confidence            55555 445555555555555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-27  Score=231.90  Aligned_cols=428  Identities=21%  Similarity=0.201  Sum_probs=255.9

Q ss_pred             CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhh
Q 042537          178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL  257 (789)
Q Consensus       178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l  257 (789)
                      +.-..++|..|+|+ .+|+..|+-.++|+.|||++|.|+.+.|++|.++++|..|-+.+         +|+|+......|
T Consensus        67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg---------~NkI~~l~k~~F  136 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG---------NNKITDLPKGAF  136 (498)
T ss_pred             CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc---------CCchhhhhhhHh
Confidence            45666777777776 66666666666788888888888877788888777776665542         355555566677


Q ss_pred             hCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCcc
Q 042537          258 SRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIE  337 (789)
Q Consensus       258 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  337 (789)
                      +++.+|+.|.+.-|++. .++.+.|..++++..|.+.+|.+.......|.++..++.+.+..|.+..     .-+++.+.
T Consensus       137 ~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla  210 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLA  210 (498)
T ss_pred             hhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhh
Confidence            77777777777777776 5666677777777777777777776666666666666666665554210     00111111


Q ss_pred             EEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcC
Q 042537          338 VLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKF  417 (789)
Q Consensus       338 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i  417 (789)
                      ... ..+.+      .+.. .....-..+.+.++. .++...+...  ++                  ++..--.+.+..
T Consensus       211 ~~~-a~~~i------etsg-arc~~p~rl~~~Ri~-q~~a~kf~c~--~e------------------sl~s~~~~~d~~  261 (498)
T KOG4237|consen  211 DDL-AMNPI------ETSG-ARCVSPYRLYYKRIN-QEDARKFLCS--LE------------------SLPSRLSSEDFP  261 (498)
T ss_pred             hHH-hhchh------hccc-ceecchHHHHHHHhc-ccchhhhhhh--HH------------------hHHHhhccccCc
Confidence            100 00000      0000 011112222333332 1111011110  00                  000001122233


Q ss_pred             ccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcC
Q 042537          418 SESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF  497 (789)
Q Consensus       418 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  497 (789)
                      .+.-|..++..+++|+.|++++|+|+++-+.+|.+...+++|.|..|++.......|.++..|++|+|++|+|+...|..
T Consensus       262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a  341 (498)
T KOG4237|consen  262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA  341 (498)
T ss_pred             CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence            34455666666789999999999999999999999999999999999999888888999999999999999999999999


Q ss_pred             ccCCCCCcEEeCCCCccccc-CchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccccc---CCccccc
Q 042537          498 FKSCSQLILMDLGKNGLSGE-IPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI---IPKCLNN  573 (789)
Q Consensus       498 ~~~l~~L~~L~ls~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~  573 (789)
                      |..+.+|.+|++-.|.+... --.|+.+.+        ..+...|..|  -+.-..++.+.++++.+...   .|+..+-
T Consensus       342 F~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl--------r~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~  411 (498)
T KOG4237|consen  342 FQTLFSLSTLNLLSNPFNCNCRLAWLGEWL--------RKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGC  411 (498)
T ss_pred             ccccceeeeeehccCcccCccchHHHHHHH--------hhCCCCCCCC--CCCCchhccccchhccccccccCCccccCC
Confidence            99999999999998876521 112333211        2222222211  12233455666666554422   1111110


Q ss_pred             cccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEE
Q 042537          574 FTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVAL  653 (789)
Q Consensus       574 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  653 (789)
                      .++-                                       +.+......=++...|+..++ .+|..+.  ..-.+|
T Consensus       412 ~~s~---------------------------------------~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~tel  449 (498)
T KOG4237|consen  412 LTSS---------------------------------------PCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTEL  449 (498)
T ss_pred             CCCC---------------------------------------CCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHH
Confidence            0000                                       000000000034445555554 5554333  245677


Q ss_pred             EccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCC
Q 042537          654 NLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN  706 (789)
Q Consensus       654 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  706 (789)
                      ++.+|.++ .+|..  .+.+| .+|+++|+++...-..|.++++|.+|-++||
T Consensus       450 yl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  450 YLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            88888887 56665  56677 7888888887666677888888888888876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=1.3e-25  Score=219.06  Aligned_cols=53  Identities=28%  Similarity=0.349  Sum_probs=35.4

Q ss_pred             CcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCC
Q 042537          456 LAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN  512 (789)
Q Consensus       456 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n  512 (789)
                      -.++++.+|.++ .+|..  .+.+| .+++++|++.......|.+++.|.+|-+++|
T Consensus       446 ~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  446 VTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            456677777777 44544  45566 7777777777655566777777777777664

>PLN03210 Resistant to P

Probab=99.88  E-value=1.8e-21  Score=235.18  Aligned_cols=307  Identities=20%  Similarity=0.239  Sum_probs=183.2

Q ss_pred             CCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeee
Q 042537          287 NLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNL  366 (789)
Q Consensus       287 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l  366 (789)
                      +|+.|++.++++.... ..+ ...+|+.|++.+|.+. .++..+..+++|+.++++++.....+|. + ...++|+.|++
T Consensus       590 ~Lr~L~~~~~~l~~lP-~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMP-SNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCCCCC-CcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEe
Confidence            3555555555443221 111 2334444444444433 3344445556666666655543333332 1 11234555555


Q ss_pred             ccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCC
Q 042537          367 SNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRL  446 (789)
Q Consensus       367 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  446 (789)
                      ++|.....+|. .+..+++|+.|++++|...+.+|                     ...  .+++|+.|++++|......
T Consensus       665 ~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp---------------------~~i--~l~sL~~L~Lsgc~~L~~~  720 (1153)
T PLN03210        665 SDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILP---------------------TGI--NLKSLYRLNLSGCSRLKSF  720 (1153)
T ss_pred             cCCCCccccch-hhhccCCCCEEeCCCCCCcCccC---------------------CcC--CCCCCCEEeCCCCCCcccc
Confidence            55443334444 34444455555555543222222                     111  1267888888887655455


Q ss_pred             CcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeee-------eeCCcCccCCCCCcEEeCCCCcccccCc
Q 042537          447 PDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLI-------GELPSFFKSCSQLILMDLGKNGLSGEIP  519 (789)
Q Consensus       447 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~ls~n~l~~~~p  519 (789)
                      |..   ..+|+.|++++|.+. .+|..+ .+++|++|++.++...       ...+..+..+++|+.|++++|...+.+|
T Consensus       721 p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP  795 (1153)
T PLN03210        721 PDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP  795 (1153)
T ss_pred             ccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC
Confidence            532   357888888888887 456554 4677888888764422       1112223345678888888887666788


Q ss_pred             hhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCccccccccc
Q 042537          520 TWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIE  599 (789)
Q Consensus       520 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  599 (789)
                      ..+. ++++|+.|++++|...+.+|... .+++|+.|++++|.....+|..                             
T Consensus       796 ~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------------------------  844 (1153)
T PLN03210        796 SSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----------------------------  844 (1153)
T ss_pred             hhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------------------
Confidence            7766 68888888888876555666655 6788888888877543333221                             


Q ss_pred             ccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCC-cceeecCcccccCCCCCEEe
Q 042537          600 FLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRN-NLTGQITPKIDQLKSLDFLD  678 (789)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~  678 (789)
                                             ..+++.|+|++|.++ .+|..+..+++|+.|+|++| +++ .+|..+..+++|+.++
T Consensus       845 -----------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~  899 (1153)
T PLN03210        845 -----------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVD  899 (1153)
T ss_pred             -----------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeee
Confidence                                   123478888888887 67888888888888888884 454 5777788888888888


Q ss_pred             CCCCc
Q 042537          679 LSQNQ  683 (789)
Q Consensus       679 Ls~N~  683 (789)
                      +++|.
T Consensus       900 l~~C~  904 (1153)
T PLN03210        900 FSDCG  904 (1153)
T ss_pred             cCCCc
Confidence            88885

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=5.7e-21  Score=230.94  Aligned_cols=340  Identities=18%  Similarity=0.199  Sum_probs=243.7

Q ss_pred             CchhccCCCCccEEEccCCcC------CCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCccccc
Q 042537          326 FPKWLQTQNQIEVLDISDAGI------SDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGL  399 (789)
Q Consensus       326 ~~~~l~~l~~L~~L~ls~n~i------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~  399 (789)
                      .+.+|..+++|+.|.+..+..      ....|..+...+.+|+.|.+.++.+. .+|. .+ ...+|+.|++.++.+...
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~L  626 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEKL  626 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCcccccc
Confidence            345677888888888866532      23456666666677888888888876 6665 33 456788889888887654


Q ss_pred             CCC--CCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCcccccc
Q 042537          400 IPP--LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFL  477 (789)
Q Consensus       400 ~~~--~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  477 (789)
                      ...  .+++|+.++++++.....++....  .++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~--l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSM--ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCcccc--CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            322  367888899988765444554333  2789999999987766888888999999999999876555667655 68


Q ss_pred             CcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCccc-------ccCCCCccCC
Q 042537          478 HSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH-------GNIPFQVCQL  550 (789)
Q Consensus       478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l  550 (789)
                      ++|+.|++++|.....+|..   ..+|+.|++++|.+. .+|..+  .+++|+.|++.++...       ...+......
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhcc
Confidence            88999999998766566543   457889999999987 788765  4778888888764322       1112222335


Q ss_pred             CcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEE
Q 042537          551 SYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILD  630 (789)
Q Consensus       551 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  630 (789)
                      ++|+.|++++|+..+.+|..++++++|+.+...+......  +                       +. ...+++|+.|+
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~--L-----------------------P~-~~~L~sL~~L~  831 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET--L-----------------------PT-GINLESLESLD  831 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe--e-----------------------CC-CCCccccCEEE
Confidence            6788888888887777888888888776665433211100  0                       00 01356789999


Q ss_pred             cccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCc
Q 042537          631 FSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNN  707 (789)
Q Consensus       631 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  707 (789)
                      +++|.....+|..   .++|+.|+|++|.++ .+|.++..+++|+.|+|++|+-...+|..+..+++|+.+++++|.
T Consensus       832 Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        832 LSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            9998665566643   367999999999998 688899999999999999855444677788889999999999885

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.7e-21  Score=217.61  Aligned_cols=79  Identities=33%  Similarity=0.310  Sum_probs=46.7

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCC
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN  706 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  706 (789)
                      +.|++++|+++ .+|..   .++|+.|++++|+++ .+|...   .+|+.|++++|+|+ .+|..+..++.|+.|++++|
T Consensus       385 ~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        385 KELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             ceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence            56666666666 34432   245666666666666 344322   34566666666666 45666666666666666666


Q ss_pred             cccccCCC
Q 042537          707 NLSGKIPL  714 (789)
Q Consensus       707 ~l~~~~p~  714 (789)
                      +|+|.+|.
T Consensus       456 ~Ls~~~~~  463 (788)
T PRK15387        456 PLSERTLQ  463 (788)
T ss_pred             CCCchHHH
Confidence            66665553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=2e-21  Score=217.02  Aligned_cols=267  Identities=26%  Similarity=0.359  Sum_probs=199.6

Q ss_pred             CccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCC
Q 042537          335 QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSR  414 (789)
Q Consensus       335 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  414 (789)
                      .-..|+++++.++. +|..+.   +.++.|++.+|+++ .+|.    ..++|++|++++|+++.. |..+++|+.|++++
T Consensus       202 ~~~~LdLs~~~Lts-LP~~l~---~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~  271 (788)
T PRK15387        202 GNAVLNVGESGLTT-LPDCLP---AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFS  271 (788)
T ss_pred             CCcEEEcCCCCCCc-CCcchh---cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cCcccccceeeccC
Confidence            34567777777763 444432   36777777777777 4554    246688888888888754 55677888899988


Q ss_pred             CcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeC
Q 042537          415 NKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGEL  494 (789)
Q Consensus       415 n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  494 (789)
                      |.+...+.. .    .+|+.|++++|+++ .+|.   ..++|+.|++++|++++ +|..   ..+|+.|++++|.+++ +
T Consensus       272 N~L~~Lp~l-p----~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        272 NPLTHLPAL-P----SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             Cchhhhhhc-h----hhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence            888764431 1    57889999999988 4453   24679999999999985 4432   3468889999999874 4


Q ss_pred             CcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccccc
Q 042537          495 PSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNF  574 (789)
Q Consensus       495 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  574 (789)
                      |..   ..+|+.|++++|+++ .+|..    .++|+.|++++|++.+ +|..   ..+|+.|++++|++++ +|...   
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---  401 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---  401 (788)
T ss_pred             ccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---
Confidence            432   257999999999998 67752    3578899999999984 5543   3578999999999884 33221   


Q ss_pred             ccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEE
Q 042537          575 TGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALN  654 (789)
Q Consensus       575 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  654 (789)
                                                                       +.|+.|++++|+++ .+|...   .+|+.|+
T Consensus       402 -------------------------------------------------s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~  428 (788)
T PRK15387        402 -------------------------------------------------SELKELMVSGNRLT-SLPMLP---SGLLSLS  428 (788)
T ss_pred             -------------------------------------------------cCCCEEEccCCcCC-CCCcch---hhhhhhh
Confidence                                                             12488999999998 467543   4688899


Q ss_pred             ccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcC
Q 042537          655 LSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL  695 (789)
Q Consensus       655 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  695 (789)
                      +++|+|+ .+|..+.++++|+.|+|++|++++..|..+..+
T Consensus       429 Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        429 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             hccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            9999998 789999999999999999999999988887544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=6.6e-20  Score=206.52  Aligned_cols=244  Identities=21%  Similarity=0.387  Sum_probs=143.5

Q ss_pred             CEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcC
Q 042537          387 SSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFF  466 (789)
Q Consensus       387 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  466 (789)
                      ..|+++++.++..+...+..++.|++++|+++..+...+    .+|+.|++++|+++ .+|..+.  .+|+.|++++|++
T Consensus       181 ~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L  253 (754)
T PRK15370        181 TELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRI  253 (754)
T ss_pred             eEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc----cCCCEEECCCCccc-cCChhhh--ccccEEECcCCcc
Confidence            445555555554433344556666666666665443322    45677777777666 3444332  3566777777776


Q ss_pred             cccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCC
Q 042537          467 SGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQ  546 (789)
Q Consensus       467 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~  546 (789)
                      . .+|..+.  .+|+.|++++|++.. +|..+.  ++|+.|++++|+++ .+|..+.   ++|+.|++++|+++. +|..
T Consensus       254 ~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~  322 (754)
T PRK15370        254 T-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPET  322 (754)
T ss_pred             C-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCcc
Confidence            6 4454443  457777777777663 444332  46777777777776 5665432   356677777777763 3433


Q ss_pred             ccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCce
Q 042537          547 VCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLV  626 (789)
Q Consensus       547 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  626 (789)
                      +  .++|+.|++++|.+++ +|..+.                                                   +.|
T Consensus       323 l--~~sL~~L~Ls~N~Lt~-LP~~l~---------------------------------------------------~sL  348 (754)
T PRK15370        323 L--PPGLKTLEAGENALTS-LPASLP---------------------------------------------------PEL  348 (754)
T ss_pred             c--cccceeccccCCcccc-CChhhc---------------------------------------------------Ccc
Confidence            3  2567777777776663 332211                                                   224


Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhh----hcCCCCCeEe
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSL----CQLSRLSVMN  702 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~  702 (789)
                      +.|++++|+++ .+|..+.  +.|+.|+|++|+++ .+|+.+.  .+|+.|++++|+++ .+|..+    ..++.+..++
T Consensus       349 ~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~  421 (754)
T PRK15370        349 QVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRII  421 (754)
T ss_pred             cEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEE
Confidence            67777777776 4565443  56777777777777 4555544  35777777777776 344433    3346677777


Q ss_pred             ccCCccc
Q 042537          703 LSYNNLS  709 (789)
Q Consensus       703 ls~N~l~  709 (789)
                      +.+|+++
T Consensus       422 L~~Npls  428 (754)
T PRK15370        422 VEYNPFS  428 (754)
T ss_pred             eeCCCcc
Confidence            7777775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.6e-19  Score=203.39  Aligned_cols=224  Identities=25%  Similarity=0.393  Sum_probs=136.4

Q ss_pred             CCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCc
Q 042537          386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF  465 (789)
Q Consensus       386 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  465 (789)
                      ++.|++++|.++..+...+.+|+.|++++|++++.+....    .+|+.|++++|.+. .+|..+.  .+|+.|++++|+
T Consensus       201 L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~----~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~  273 (754)
T PRK15370        201 ITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP----DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNK  273 (754)
T ss_pred             CcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh----ccccEEECcCCccC-cCChhHh--CCCCEEECcCCc
Confidence            4444444444443333334455566666665554332221    45677777777766 4454443  367777777777


Q ss_pred             CcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCC
Q 042537          466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPF  545 (789)
Q Consensus       466 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~  545 (789)
                      ++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++ .+|..+.   ++|+.|++++|.+++ +|.
T Consensus       274 L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~  342 (754)
T PRK15370        274 IS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALTS-LPA  342 (754)
T ss_pred             cC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc---ccceeccccCCcccc-CCh
Confidence            76 3455443  467777777777764 343332  46777777777777 5665443   577777777777774 454


Q ss_pred             CccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCc
Q 042537          546 QVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGL  625 (789)
Q Consensus       546 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  625 (789)
                      .+.  ++|+.|++++|+++. +|..+.                                                   +.
T Consensus       343 ~l~--~sL~~L~Ls~N~L~~-LP~~lp---------------------------------------------------~~  368 (754)
T PRK15370        343 SLP--PELQVLDVSKNQITV-LPETLP---------------------------------------------------PT  368 (754)
T ss_pred             hhc--CcccEEECCCCCCCc-CChhhc---------------------------------------------------CC
Confidence            443  577888888887763 343221                                                   12


Q ss_pred             eeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc----ccCCCCCEEeCCCCccc
Q 042537          626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI----DQLKSLDFLDLSQNQFV  685 (789)
Q Consensus       626 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~Ls~N~l~  685 (789)
                      |+.|++++|+++ .+|..+.  ..|+.|++++|+++ .+|..+    ..++.+..|++.+|.++
T Consensus       369 L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        369 ITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            477888888887 4565554  35778888888887 455544    33477788888888876

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=2.6e-19  Score=155.08  Aligned_cols=182  Identities=26%  Similarity=0.439  Sum_probs=132.5

Q ss_pred             ccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCce
Q 042537          476 FLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQI  555 (789)
Q Consensus       476 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  555 (789)
                      .+..++.|.+++|+++ ..|..+..+.+|+.|++++|+|. .+|..+. .+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence            4566777778888877 44556777788888888888887 7888776 5888888888888887 77888888888888


Q ss_pred             EeccCCcccc-cCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccC
Q 042537          556 LDLSLNNISG-IIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMN  634 (789)
Q Consensus       556 L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  634 (789)
                      ||+++|++.. ..|..|-.++.|                                                 +.|+|++|
T Consensus       107 ldltynnl~e~~lpgnff~m~tl-------------------------------------------------ralyl~dn  137 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTL-------------------------------------------------RALYLGDN  137 (264)
T ss_pred             hhccccccccccCCcchhHHHHH-------------------------------------------------HHHHhcCC
Confidence            8888887764 334444433333                                                 66777788


Q ss_pred             ccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC---CCCeEeccCCccccc
Q 042537          635 KLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS---RLSVMNLSYNNLSGK  711 (789)
Q Consensus       635 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~ls~N~l~~~  711 (789)
                      .+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|.+.+|+++ .+|..++.+.   +=+.+.+.+|++..+
T Consensus       138 dfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p  214 (264)
T KOG0617|consen  138 DFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP  214 (264)
T ss_pred             Ccc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence            777 77777888888888888888877 67788888888888888888887 5555555543   234556677777655


Q ss_pred             CC
Q 042537          712 IP  713 (789)
Q Consensus       712 ~p  713 (789)
                      |.
T Consensus       215 Ia  216 (264)
T KOG0617|consen  215 IA  216 (264)
T ss_pred             HH
Confidence            44

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=7.3e-18  Score=177.57  Aligned_cols=143  Identities=22%  Similarity=0.277  Sum_probs=69.1

Q ss_pred             CCCcEEEccCCCCccc----CchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccC
Q 042537          203 SKLVVLDLDSNLLQGS----LLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVT  278 (789)
Q Consensus       203 ~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  278 (789)
                      ++|+.|++++|.+++.    .+..+..+++|++|++++|.++.-      -...++..+..+++|++|++++|.+.+...
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA------GIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH------HHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            3566666666665522    223344555566666653322210      001123334445566666666666652211


Q ss_pred             h---hhhhcCCCCcEEEccCCcccccccCCCC-----CcccceeEeccCccCCC----CCchhccCCCCccEEEccCCcC
Q 042537          279 E---SVFSELSNLKALHLDDNSFTLKFSHDWI-----PPFQLIIILLGSCQMGP----HFPKWLQTQNQIEVLDISDAGI  346 (789)
Q Consensus       279 ~---~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~ls~n~i  346 (789)
                      .   ..+..+++|++|++++|.+.......+.     ....|+.|++++|.+..    .+...+..+++|+++++++|.+
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            1   1244556666666666665532111111     12345555555554431    2233445556777777777777


Q ss_pred             CCCcc
Q 042537          347 SDTVP  351 (789)
Q Consensus       347 ~~~~~  351 (789)
                      ++...
T Consensus       291 ~~~~~  295 (319)
T cd00116         291 GEEGA  295 (319)
T ss_pred             cHHHH
Confidence            65533

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=3.6e-19  Score=154.14  Aligned_cols=181  Identities=25%  Similarity=0.482  Sum_probs=157.9

Q ss_pred             ccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccC
Q 042537          498 FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGM  577 (789)
Q Consensus       498 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  577 (789)
                      +.++...+.|.+|+|+++ .+|..+. .+.+|+.|++++|++. .+|..++.++.|+.|++.-|++. ..|..|+.++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            345677889999999999 8998888 6999999999999998 78889999999999999999987 788888877766


Q ss_pred             cccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCcccc-ccchhhhccccCcEEEcc
Q 042537          578 AQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSG-TIPEEIMDLVGLVALNLS  656 (789)
Q Consensus       578 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls  656 (789)
                                                                       ++|||++|++.. .+|..|..++.|+.|+|+
T Consensus       105 -------------------------------------------------evldltynnl~e~~lpgnff~m~tlralyl~  135 (264)
T KOG0617|consen  105 -------------------------------------------------EVLDLTYNNLNENSLPGNFFYMTTLRALYLG  135 (264)
T ss_pred             -------------------------------------------------hhhhccccccccccCCcchhHHHHHHHHHhc
Confidence                                                             899999999974 689999999999999999


Q ss_pred             CCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCcccccc---ccccCCCCCCC
Q 042537          657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFN---ASVYAGNPELC  733 (789)
Q Consensus       657 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~---~~~~~~n~~lc  733 (789)
                      .|.+. .+|+.++++++|+.|.+..|.+. ..|..++.+++|+.|.+.+|+++-..|+-+++.-..   ....+.|||.-
T Consensus       136 dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  136 DNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             CCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            99998 89999999999999999999998 789999999999999999999986666655544321   22367888865

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=5e-18  Score=178.80  Aligned_cols=234  Identities=23%  Similarity=0.217  Sum_probs=123.2

Q ss_pred             CCCCEEEcCCCcccc------CCCcccccCCCCcEEEcCCCcCcccCCccccccCc---ccEEEccCCeeee----eCCc
Q 042537          430 HKLEFLDLSNNILSG------RLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHS---IQTLSLYNNSLIG----ELPS  496 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~  496 (789)
                      +.+++++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+..+..   |++|++++|++..    .+..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            456666666665542      12334555666777777776666444444444443   7777777766652    1122


Q ss_pred             CccCC-CCCcEEeCCCCcccccCchhh---hhcCCCCcEEEcCCCccccc----CCCCccCCCcCceEeccCCcccccCC
Q 042537          497 FFKSC-SQLILMDLGKNGLSGEIPTWI---GEGLPKLVVLSLKSNKFHGN----IPFQVCQLSYIQILDLSLNNISGIIP  568 (789)
Q Consensus       497 ~~~~l-~~L~~L~ls~n~l~~~~p~~~---~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p  568 (789)
                      .+..+ ++|+.|++++|.+++.....+   +..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++...
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            33444 666777777776663222111   12345677777777666531    12223344566777777666653322


Q ss_pred             ccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhc--
Q 042537          569 KCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMD--  646 (789)
Q Consensus       569 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--  646 (789)
                      ..+...                                             ...++.|+.|++++|.+++.....+..  
T Consensus       211 ~~l~~~---------------------------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~  245 (319)
T cd00116         211 SALAET---------------------------------------------LASLKSLEVLNLGDNNLTDAGAAALASAL  245 (319)
T ss_pred             HHHHHH---------------------------------------------hcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence            111100                                             012234466777777666433333322  


Q ss_pred             ---cccCcEEEccCCccee----ecCcccccCCCCCEEeCCCCccccc----CchhhhcC-CCCCeEeccCCcc
Q 042537          647 ---LVGLVALNLSRNNLTG----QITPKIDQLKSLDFLDLSQNQFVGG----IPSSLCQL-SRLSVMNLSYNNL  708 (789)
Q Consensus       647 ---l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l  708 (789)
                         .+.|++|++++|.++.    .+...+..+++|+.+|+++|.++..    ....+... +.|+++++.+|++
T Consensus       246 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence               2567777777776651    2233445556677777777777643    33333344 5666666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.56  E-value=2e-14  Score=162.19  Aligned_cols=148  Identities=31%  Similarity=0.449  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHhhcCcCCCCCCCCCCCCCCCCCCC----ceeeeEecC--CC--CcEEEEEcCCCCCCCCcccccCccccC
Q 042537            2 EEEREALLEFKQSLVDEYGILSSWGREDDKRDCC----YWRGVRCSN--TT--GHVIVLDLQVLVHSEPLKGTISPSLLK   73 (789)
Q Consensus         2 ~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c----~w~gv~c~~--~~--~~v~~l~L~~~~~~~~l~~~l~~~~~~   73 (789)
                      ++|.+||+++|+++.++..  .+|.    +++||    .|.||.|..  ..  .+|+.|+|++    +.+.|.+|+.+.+
T Consensus       371 ~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~----n~L~g~ip~~i~~  440 (623)
T PLN03150        371 LEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN----QGLRGFIPNDISK  440 (623)
T ss_pred             chHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC----CCccccCCHHHhC
Confidence            5789999999999876543  4797    33442    799999952  12  2599999998    8899999999999


Q ss_pred             CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCC-CCC
Q 042537           74 LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKL-PSL  152 (789)
Q Consensus        74 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-~~L  152 (789)
                      +++|+.|+|++|.+.+. +|..++.+++|++|+|++|++++.+|..++++++|++|+|++|++++.  +|..++.+ .++
T Consensus       441 L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~--iP~~l~~~~~~~  517 (623)
T PLN03150        441 LRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR--VPAALGGRLLHR  517 (623)
T ss_pred             CCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccccc--CChHHhhccccC
Confidence            99999999999999886 898999999999999999999999999999999999999999999874  67777653 466


Q ss_pred             CEEEcCCCCC
Q 042537          153 RTLNLEHCHL  162 (789)
Q Consensus       153 ~~L~L~~n~l  162 (789)
                      ..+++.+|..
T Consensus       518 ~~l~~~~N~~  527 (623)
T PLN03150        518 ASFNFTDNAG  527 (623)
T ss_pred             ceEEecCCcc
Confidence            7788887753

>PLN03150 hypothetical protein; Provisional

Probab=99.51  E-value=6.3e-14  Score=158.18  Aligned_cols=118  Identities=38%  Similarity=0.640  Sum_probs=105.5

Q ss_pred             ceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEecc
Q 042537          625 LVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS  704 (789)
Q Consensus       625 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  704 (789)
                      .++.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|++++.+|+.+..+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCC--ccccccccccCCCCCCCCCCCCCCCC
Q 042537          705 YNNLSGKIPLGT--QLQSFNASVYAGNPELCGLPLRNKCP  742 (789)
Q Consensus       705 ~N~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~l~~~c~  742 (789)
                      +|+++|.+|...  .+.......+.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999742  22233455689999999987656674

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=2.4e-14  Score=147.31  Aligned_cols=194  Identities=29%  Similarity=0.421  Sum_probs=138.2

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      .--...|++.|++. .+|..++.+..|+.+.+..|.+. .+|.++..+..|++++++.|+++ .+|..++.| -|+.|-+
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIV  150 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEE
Confidence            33456677777776 67777777777777777777777 66777777777788888887776 555555555 3777777


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      ++|+++ .+|..+. .++.|..|+.+.|++. .+|..++++.+|+.|.+..|++.. .|..+..++              
T Consensus       151 sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp--------------  212 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP--------------  212 (722)
T ss_pred             ecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc--------------
Confidence            778777 7777777 6777777888888776 566677777788888887777763 333333221              


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc-
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-  668 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-  668 (789)
                                                          |..||+|+|+++ .+|-.|.+|+.|++|-|.+|.+. ..|..+ 
T Consensus       213 ------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  213 ------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             ------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence                                                367888888887 78888888888888888888887 455544 


Q ss_pred             --ccCCCCCEEeCCCCc
Q 042537          669 --DQLKSLDFLDLSQNQ  683 (789)
Q Consensus       669 --~~l~~L~~L~Ls~N~  683 (789)
                        +...--++|+..-++
T Consensus       255 ~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  255 EKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hccceeeeeeecchhcc
Confidence              444556677777764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.34  E-value=7.4e-14  Score=143.81  Aligned_cols=213  Identities=25%  Similarity=0.397  Sum_probs=171.4

Q ss_pred             EEcCCCccccCCCccc-ccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCc
Q 042537          435 LDLSNNILSGRLPDCW-MQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNG  513 (789)
Q Consensus       435 L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~  513 (789)
                      |.|++-++....-.++ ..+.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|+++||+.|+
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence            4455544442211122 33445567899999999 78888888899999999999998 778899999999999999999


Q ss_pred             ccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCccc
Q 042537          514 LSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTF  593 (789)
Q Consensus       514 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~  593 (789)
                      ++ .+|..++ .+ -|+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.++                
T Consensus       133 lS-~lp~~lC-~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl----------------  191 (722)
T KOG0532|consen  133 LS-HLPDGLC-DL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL----------------  191 (722)
T ss_pred             hh-cCChhhh-cC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH----------------
Confidence            99 9999887 45 4999999999998 78888888999999999999988 455556666555                


Q ss_pred             ccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCC
Q 042537          594 ERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKS  673 (789)
Q Consensus       594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  673 (789)
                                                       +.|.+..|++. .+|+++..|+ |..||+|.|+++ .+|-.|..|+.
T Consensus       192 ---------------------------------r~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~  235 (722)
T KOG0532|consen  192 ---------------------------------RDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRH  235 (722)
T ss_pred             ---------------------------------HHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhh
Confidence                                             77888889988 6788888654 889999999998 89999999999


Q ss_pred             CCEEeCCCCcccccCchhh---hcCCCCCeEeccCCc
Q 042537          674 LDFLDLSQNQFVGGIPSSL---CQLSRLSVMNLSYNN  707 (789)
Q Consensus       674 L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~ls~N~  707 (789)
                      |++|-|.+|.++ ..|..+   +...-.++|+..-++
T Consensus       236 Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  236 LQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             heeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            999999999998 566655   344566788887773

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.24  E-value=1e-11  Score=134.50  Aligned_cols=199  Identities=34%  Similarity=0.485  Sum_probs=112.2

Q ss_pred             EEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccC-cccEEEccCCeeeeeCCcCccCCCCCcEEeCCCC
Q 042537          434 FLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLH-SIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN  512 (789)
Q Consensus       434 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n  512 (789)
                      .+++..+.+.. ....+..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            46666666542 2223444466777777777777 3444444443 6777777777766 33345666777777777777


Q ss_pred             cccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcc
Q 042537          513 GLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYT  592 (789)
Q Consensus       513 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~  592 (789)
                      ++. .+|.... ..+.|+.|++++|++. .+|........|+++.+++|++. ..+..+.++..                
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~----------------  233 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN----------------  233 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc----------------
Confidence            776 6665543 3566777777777766 44444344445666666666422 12222222222                


Q ss_pred             cccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCC
Q 042537          593 FERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLK  672 (789)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  672 (789)
                                                       +..+.+++|++. .++..++.++.++.|++++|.++ .++. ++.+.
T Consensus       234 ---------------------------------l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~  277 (394)
T COG4886         234 ---------------------------------LSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLT  277 (394)
T ss_pred             ---------------------------------ccccccCCceee-eccchhccccccceecccccccc-cccc-ccccC
Confidence                                             244455555554 33455566666666666666665 2333 56666


Q ss_pred             CCCEEeCCCCcccccCchh
Q 042537          673 SLDFLDLSQNQFVGGIPSS  691 (789)
Q Consensus       673 ~L~~L~Ls~N~l~~~~p~~  691 (789)
                      +++.||+++|.+....|..
T Consensus       278 ~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         278 NLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccCEEeccCccccccchhh
Confidence            6666666666666554443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.22  E-value=1.2e-11  Score=133.89  Aligned_cols=197  Identities=30%  Similarity=0.431  Sum_probs=100.3

Q ss_pred             EEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCC-CCcEEeCCCCcccccCchhhhhcCCCCcEEEcCC
Q 042537          458 VLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCS-QLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS  536 (789)
Q Consensus       458 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~  536 (789)
                      .+++..|.+... .......+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+. .+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence            455555555322 122333455566666666655 2333333342 5666666666665 5544443 456666666666


Q ss_pred             CcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccc
Q 042537          537 NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQ  616 (789)
Q Consensus       537 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (789)
                      |++. .+|...+..+.|+.|++++|+++.. |......                                          
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~~~~~------------------------------------------  208 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDL-PPEIELL------------------------------------------  208 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccccC-chhhhhh------------------------------------------
Confidence            6665 3333333555566666666665522 2211111                                          


Q ss_pred             cccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC
Q 042537          617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS  696 (789)
Q Consensus       617 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  696 (789)
                             ..|+++++++|++. ..+..+..+..+..|.+++|++. ..+..++.+++++.|++++|+++...+  +..+.
T Consensus       209 -------~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~  277 (394)
T COG4886         209 -------SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLT  277 (394)
T ss_pred             -------hhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccC
Confidence                   11255555555433 34445555566666666666655 234555555556666666666653322  55556


Q ss_pred             CCCeEeccCCcccccCC
Q 042537          697 RLSVMNLSYNNLSGKIP  713 (789)
Q Consensus       697 ~L~~L~ls~N~l~~~~p  713 (789)
                      +++.|++++|.++...|
T Consensus       278 ~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         278 NLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccCEEeccCccccccch
Confidence            66666666665554444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=5.3e-12  Score=119.95  Aligned_cols=132  Identities=28%  Similarity=0.283  Sum_probs=95.8

Q ss_pred             CCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccc
Q 042537          527 PKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVD  606 (789)
Q Consensus       527 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (789)
                      ..|+++||++|.|+ .+..+..-.+.++.|++|+|.+..+..  +..                                 
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La~---------------------------------  327 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LAE---------------------------------  327 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hhh---------------------------------
Confidence            45777777777777 445566667777888888887763311  222                                 


Q ss_pred             eeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccc
Q 042537          607 NVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVG  686 (789)
Q Consensus       607 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  686 (789)
                                      +++|+.||||+|.++ .+..+-..+-+.+.|+|++|.|..  -..++++-+|..||+++|+|..
T Consensus       328 ----------------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~  388 (490)
T KOG1259|consen  328 ----------------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEE  388 (490)
T ss_pred             ----------------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhh
Confidence                            234478888888887 444455667788899999998863  4567888899999999999975


Q ss_pred             cCc-hhhhcCCCCCeEeccCCcccccCC
Q 042537          687 GIP-SSLCQLSRLSVMNLSYNNLSGKIP  713 (789)
Q Consensus       687 ~~p-~~l~~l~~L~~L~ls~N~l~~~~p  713 (789)
                      ... ..+++||.|+.+.+.+|++++.+.
T Consensus       389 ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  389 LDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             HHHhcccccccHHHHHhhcCCCccccch
Confidence            533 568889999999999999986544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.2e-11  Score=124.06  Aligned_cols=215  Identities=24%  Similarity=0.225  Sum_probs=139.4

Q ss_pred             cCCCCCCEEecCCCcCCCCCC--ccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccc
Q 042537           97 GSLNKLRYLSLSSAEFEGPIP--SQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLN  174 (789)
Q Consensus        97 ~~l~~L~~L~Ls~n~i~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  174 (789)
                      .++++|+...|.++.+. ..+  .....+++++.||||+|-+.....+......+|+|+.|+++.|.+........ ...
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLL  195 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhh
Confidence            56788888888888766 233  35667888888888888888766666777888888888888888765433211 122


Q ss_pred             cCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccch
Q 042537          175 FSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTIN  254 (789)
Q Consensus       175 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~  254 (789)
                      +  ++|+.|.++.|.++..-...+....|.|+.|+|..|....+......-+..|+.|+|++|++-..+.         -
T Consensus       196 l--~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~---------~  264 (505)
T KOG3207|consen  196 L--SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ---------G  264 (505)
T ss_pred             h--hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc---------c
Confidence            3  7888888888888754444555555688888888885443444455567778888888665443321         1


Q ss_pred             hhhhCCCCCCEEEccCCCCCCccChhh-----hhcCCCCcEEEccCCcccccc-cCCCCCcccceeEeccCccCCC
Q 042537          255 QWLSRMYKLDALSLSGNSLTGVVTESV-----FSELSNLKALHLDDNSFTLKF-SHDWIPPFQLIIILLGSCQMGP  324 (789)
Q Consensus       255 ~~l~~l~~L~~L~L~~n~l~~~~~~~~-----~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~~~~~~  324 (789)
                      ...+.++.|+.|+++.+.+...-..+.     ...+++|++|+++.|+|..-. -..+..+.+|+.+.+..+.+..
T Consensus       265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            235667778888888877763211111     345678888888888774211 1122334566666666666653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.1e-11  Score=124.25  Aligned_cols=84  Identities=25%  Similarity=0.301  Sum_probs=50.1

Q ss_pred             eeEEEcccCcccccc-chhhhccccCcEEEccCCcceee-cCcc-----cccCCCCCEEeCCCCcccccC-chhhhcCCC
Q 042537          626 VKILDFSMNKLSGTI-PEEIMDLVGLVALNLSRNNLTGQ-ITPK-----IDQLKSLDFLDLSQNQFVGGI-PSSLCQLSR  697 (789)
Q Consensus       626 L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~  697 (789)
                      |+.|||++|++.... -...+.++.|+.|+++.+.+... .|+.     ...+++|+.|+++.|++...- -..+..+++
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n  327 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN  327 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence            466666666665321 03356677777777777777643 2222     355677788888888775221 133445567


Q ss_pred             CCeEeccCCccc
Q 042537          698 LSVMNLSYNNLS  709 (789)
Q Consensus       698 L~~L~ls~N~l~  709 (789)
                      |+.|.+..|+++
T Consensus       328 lk~l~~~~n~ln  339 (505)
T KOG3207|consen  328 LKHLRITLNYLN  339 (505)
T ss_pred             hhhhhccccccc
Confidence            777777777775

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.06  E-value=4.1e-11  Score=117.02  Aligned_cols=210  Identities=25%  Similarity=0.283  Sum_probs=106.8

Q ss_pred             CccccCCCCCCEEeCCCCCCCCC---CCcccccCCCCCCEEecCCCc---CCCCCCcc-------ccCCCCCcEEeccCc
Q 042537           68 SPSLLKLYHLRHLDLSENDFSGS---RIPEFIGSLNKLRYLSLSSAE---FEGPIPSQ-------LGNLSRLKYLDLSYI  134 (789)
Q Consensus        68 ~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~Ls~n~---i~~~~p~~-------~~~l~~L~~L~Ls~n  134 (789)
                      -+.+..+..+++++||+|.+...   .+...+.+-++|+..++|.--   ....+|.+       +...++|++||||.|
T Consensus        23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            34566778889999999988632   123456667788888887532   22233433       345567777777777


Q ss_pred             cCCC--CcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccC
Q 042537          135 NLNK--SRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDS  212 (789)
Q Consensus       135 ~l~~--~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~  212 (789)
                      -+..  ++.+-..+.++..|++|.|.+|.+...-..  .++    ..|+.|.  .++.        ....++|+++..+.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~--~l~----~al~~l~--~~kk--------~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG--RLG----RALFELA--VNKK--------AASKPKLRVFICGR  166 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHH--HHH----HHHHHHH--HHhc--------cCCCcceEEEEeec
Confidence            6542  233444556667777777777765322110  000    1111111  0000        01112566666666


Q ss_pred             CCCcccCc----hhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCc---cChhhhhcC
Q 042537          213 NLLQGSLL----EPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGV---VTESVFSEL  285 (789)
Q Consensus       213 n~i~~~~~----~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~l  285 (789)
                      |++.....    ..|...+.|+.+.+..|.+..     ..+ ..+...|..+++|+.|||.+|.++..   .-...+..+
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~-----eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~  240 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRP-----EGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW  240 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccC-----chh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence            65543222    234445555555555443321     011 12334455666666666666665521   111234455


Q ss_pred             CCCcEEEccCCccc
Q 042537          286 SNLKALHLDDNSFT  299 (789)
Q Consensus       286 ~~L~~L~L~~n~i~  299 (789)
                      ++|++|++++|.+.
T Consensus       241 ~~L~El~l~dcll~  254 (382)
T KOG1909|consen  241 PHLRELNLGDCLLE  254 (382)
T ss_pred             chheeecccccccc
Confidence            55666666655554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=3.3e-10  Score=104.24  Aligned_cols=76  Identities=29%  Similarity=0.388  Sum_probs=26.9

Q ss_pred             eeEEEcccCccccccchhh-hccccCcEEEccCCcceeec-CcccccCCCCCEEeCCCCcccccCc---hhhhcCCCCCe
Q 042537          626 VKILDFSMNKLSGTIPEEI-MDLVGLVALNLSRNNLTGQI-TPKIDQLKSLDFLDLSQNQFVGGIP---SSLCQLSRLSV  700 (789)
Q Consensus       626 L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~  700 (789)
                      |+.|++++|+|+. +++.+ ..+++|++|+|++|+|.... -..+..+++|+.|+|.+|.+....-   ..+..+|+|+.
T Consensus        66 L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~  144 (175)
T PF14580_consen   66 LKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV  144 (175)
T ss_dssp             --EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred             hhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence            3666666666663 33333 34666666666666665321 1234555666666666666653211   23445566666


Q ss_pred             Ee
Q 042537          701 MN  702 (789)
Q Consensus       701 L~  702 (789)
                      ||
T Consensus       145 LD  146 (175)
T PF14580_consen  145 LD  146 (175)
T ss_dssp             ET
T ss_pred             eC
Confidence            54

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=1.2e-10  Score=113.82  Aligned_cols=93  Identities=25%  Similarity=0.234  Sum_probs=65.7

Q ss_pred             CCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCC---CCc-------ccccCCCCCCEEecCCCcCCCC
Q 042537           46 TGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGS---RIP-------EFIGSLNKLRYLSLSSAEFEGP  115 (789)
Q Consensus        46 ~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~---~~~-------~~~~~l~~L~~L~Ls~n~i~~~  115 (789)
                      ...++.++|+++..+..-...+.+.+.+.+.|+.-++|.-- ++.   .+|       ..+..+++|++||||.|.+...
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            45789999999322222233456678888999999998642 221   133       2455678999999999998654


Q ss_pred             CCcc----ccCCCCCcEEeccCccCCCC
Q 042537          116 IPSQ----LGNLSRLKYLDLSYINLNKS  139 (789)
Q Consensus       116 ~p~~----~~~l~~L~~L~Ls~n~l~~~  139 (789)
                      -+..    +..++.|++|.|.+|.+...
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~  135 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPE  135 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChh
Confidence            4444    46789999999999988753

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=2.6e-10  Score=108.66  Aligned_cols=108  Identities=28%  Similarity=0.313  Sum_probs=87.8

Q ss_pred             ccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCc
Q 042537          451 MQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLV  530 (789)
Q Consensus       451 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~  530 (789)
                      .....|+.+||++|.|+ .+.++..-.+.++.|++++|.|..+.  .+..+++|+.||+|+|.++ .+..|-. .+.+.+
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~-KLGNIK  355 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHL-KLGNIK  355 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHh-hhcCEe
Confidence            34456889999999998 56677778889999999999998543  3788899999999999998 7777766 688999


Q ss_pred             EEEcCCCcccccCCCCccCCCcCceEeccCCcccc
Q 042537          531 VLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISG  565 (789)
Q Consensus       531 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  565 (789)
                      .|.|+.|.+...  ..+..+-+|..||+++|+|..
T Consensus       356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~  388 (490)
T KOG1259|consen  356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEE  388 (490)
T ss_pred             eeehhhhhHhhh--hhhHhhhhheeccccccchhh
Confidence            999999988743  256778889999999998863

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=1.8e-09  Score=99.40  Aligned_cols=110  Identities=25%  Similarity=0.297  Sum_probs=36.2

Q ss_pred             ccCCCCcEEEcCCCcCcccCCcccc-ccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCC
Q 042537          451 MQFDRLAVLSLANNFFSGKIPKSMG-FLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKL  529 (789)
Q Consensus       451 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L  529 (789)
                      .+..++++|+|.+|.|+.+ . .++ .+.+|+.|++++|.|+..  +.+..++.|++|++++|+|+ .++..+...+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            3444566777777777632 2 343 456777777777777643  24666777777777777777 5655444357788


Q ss_pred             cEEEcCCCcccccCC-CCccCCCcCceEeccCCcccc
Q 042537          530 VVLSLKSNKFHGNIP-FQVCQLSYIQILDLSLNNISG  565 (789)
Q Consensus       530 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~  565 (789)
                      ++|++++|+|..... ..+..+++|+.|++.+|+++.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            888888887764321 245667788888888888763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=1.1e-09  Score=82.77  Aligned_cols=60  Identities=37%  Similarity=0.494  Sum_probs=34.2

Q ss_pred             cCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcc
Q 042537          649 GLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNL  708 (789)
Q Consensus       649 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  708 (789)
                      +|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555544445555555666666666666555555555666666666665543

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.89  E-value=1.7e-09  Score=74.26  Aligned_cols=41  Identities=49%  Similarity=0.953  Sum_probs=30.8

Q ss_pred             CHHHHHHHHHHhhcCc-CCCCCCCCCCCCCC-CCCCCceeeeEec
Q 042537            1 MEEEREALLEFKQSLV-DEYGILSSWGREDD-KRDCCYWRGVRCS   43 (789)
Q Consensus         1 ~~~~~~~ll~~~~~~~-~~~~~~~~w~~~~~-~~~~c~w~gv~c~   43 (789)
                      +++|++||++||+++. +|.+.+.+|+.  . ..+||+|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence            4789999999999998 57789999984  2 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.88  E-value=1.9e-10  Score=124.58  Aligned_cols=85  Identities=24%  Similarity=0.292  Sum_probs=60.9

Q ss_pred             eeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCccccc---Cchh-hhcCCCCCeE
Q 042537          626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGG---IPSS-LCQLSRLSVM  701 (789)
Q Consensus       626 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L  701 (789)
                      |+.+++++|.+. .++..+..+..+..|++++|++..  -..+.....+..+....|.+...   .... ....+.++.+
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            578888888887 454667788888889999888864  23356667778888888887622   1121 4556788888


Q ss_pred             eccCCcccccCC
Q 042537          702 NLSYNNLSGKIP  713 (789)
Q Consensus       702 ~ls~N~l~~~~p  713 (789)
                      .+.+|+.....+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            888888876655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=2.2e-09  Score=81.02  Aligned_cols=61  Identities=38%  Similarity=0.506  Sum_probs=56.8

Q ss_pred             CceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcc
Q 042537          624 GLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQF  684 (789)
Q Consensus       624 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  684 (789)
                      ++|+.|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4679999999999977778999999999999999999988888999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=4.1e-10  Score=122.01  Aligned_cols=35  Identities=37%  Similarity=0.520  Sum_probs=15.6

Q ss_pred             CcEEEccCCcceeecCcccccCCCCCEEeCCCCccc
Q 042537          650 LVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFV  685 (789)
Q Consensus       650 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  685 (789)
                      |+.+++++|++. .++..+..+..++.||+++|++.
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccc
Confidence            444444444444 22233444444444444444444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.61  E-value=2.1e-08  Score=115.92  Aligned_cols=252  Identities=26%  Similarity=0.281  Sum_probs=131.5

Q ss_pred             CCCEEeCCCCC--CCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCC
Q 042537           76 HLRHLDLSEND--FSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR  153 (789)
Q Consensus        76 ~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~  153 (789)
                      .|++|-+..|.  +..+ ..++|..++.|++|||++|.--+.+|..+++|.+||+|++++..+..   +|..++++.+|.
T Consensus       546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~---LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH---LPSGLGNLKKLI  621 (889)
T ss_pred             ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc---cchHHHHHHhhh
Confidence            57777777764  3322 34456677778888887776555777777777788877777777665   677777777777


Q ss_pred             EEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCC--CCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcE
Q 042537          154 TLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLS--SSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRT  231 (789)
Q Consensus       154 ~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  231 (789)
                      +|++..+.-...++...  ..+  .+|++|.+......  ......+..+ .+|+.+.......  .+...+..+..|+.
T Consensus       622 ~Lnl~~~~~l~~~~~i~--~~L--~~Lr~L~l~~s~~~~~~~~l~el~~L-e~L~~ls~~~~s~--~~~e~l~~~~~L~~  694 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGIL--LEL--QSLRVLRLPRSALSNDKLLLKELENL-EHLENLSITISSV--LLLEDLLGMTRLRS  694 (889)
T ss_pred             eeccccccccccccchh--hhc--ccccEEEeeccccccchhhHHhhhcc-cchhhheeecchh--HhHhhhhhhHHHHH
Confidence            77777765444444222  223  67777777655421  1122222211 2344444322222  11112233333332


Q ss_pred             EECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhc------CCCCcEEEccCCcccccccCC
Q 042537          232 LYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSE------LSNLKALHLDDNSFTLKFSHD  305 (789)
Q Consensus       232 L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~------l~~L~~L~L~~n~i~~~~~~~  305 (789)
                      +...      +.+..+.. ...+..+..+.+|+.|.+.++.+... ....+..      ++++..+...++..  .....
T Consensus       695 ~~~~------l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~-~~~~~~~~~~~~~f~~l~~~~~~~~~~--~r~l~  764 (889)
T KOG4658|consen  695 LLQS------LSIEGCSK-RTLISSLGSLGNLEELSILDCGISEI-VIEWEESLIVLLCFPNLSKVSILNCHM--LRDLT  764 (889)
T ss_pred             HhHh------hhhccccc-ceeecccccccCcceEEEEcCCCchh-hcccccccchhhhHHHHHHHHhhcccc--ccccc
Confidence            2111      00001111 12234466677888888888777521 1101110      22222222222211  11122


Q ss_pred             C-CCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCC
Q 042537          306 W-IPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISD  348 (789)
Q Consensus       306 ~-~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~  348 (789)
                      | .-.++|+.|.+..|.....+.+....+..++.+.+..+.+.+
T Consensus       765 ~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~  808 (889)
T KOG4658|consen  765 WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG  808 (889)
T ss_pred             hhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence            2 235688888888887776666666666666665555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=2.4e-09  Score=102.25  Aligned_cols=87  Identities=29%  Similarity=0.434  Sum_probs=48.4

Q ss_pred             CCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCcc-CCCCcchHHhhCCCCCCCE
Q 042537           76 HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN-LNKSRDWLRIIDKLPSLRT  154 (789)
Q Consensus        76 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~  154 (789)
                      +|++||||+..|+...+...+..|.+|+.|.|.++++.+.+...+.+-.+|+.|+++.+. ++.. .+.-.+..++.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-ALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-HHHHHHHhhhhHhh
Confidence            366666666665543344445566666666666666665555556666666666666542 2221 12234555666666


Q ss_pred             EEcCCCCCC
Q 042537          155 LNLEHCHLP  163 (789)
Q Consensus       155 L~L~~n~l~  163 (789)
                      |+++.|.+.
T Consensus       265 LNlsWc~l~  273 (419)
T KOG2120|consen  265 LNLSWCFLF  273 (419)
T ss_pred             cCchHhhcc
Confidence            666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.51  E-value=1.6e-09  Score=115.31  Aligned_cols=80  Identities=40%  Similarity=0.397  Sum_probs=40.8

Q ss_pred             eEEEcccCccccccch-hhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCc-hhhhcCCCCCeEecc
Q 042537          627 KILDFSMNKLSGTIPE-EIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIP-SSLCQLSRLSVMNLS  704 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls  704 (789)
                      +.|||++|.+. .+|. ....+. |..|+|++|.++.  -..+.++.+|+.||+++|-|.+--. .-+..|..|+.|+|.
T Consensus       212 khLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le  287 (1096)
T KOG1859|consen  212 KHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE  287 (1096)
T ss_pred             cccccccchhc-cccccchhhhh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence            55555555555 3332 111222 6666666666652  2335566666666666666543211 223445566666666


Q ss_pred             CCcccc
Q 042537          705 YNNLSG  710 (789)
Q Consensus       705 ~N~l~~  710 (789)
                      +|++.+
T Consensus       288 GNPl~c  293 (1096)
T KOG1859|consen  288 GNPLCC  293 (1096)
T ss_pred             CCcccc
Confidence            666653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.49  E-value=8.5e-09  Score=109.93  Aligned_cols=107  Identities=29%  Similarity=0.359  Sum_probs=83.1

Q ss_pred             cCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCc-ccccCCCCCEEeCCCCcccccCchhhhcCCCCCeE
Q 042537          623 LGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITP-KIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVM  701 (789)
Q Consensus       623 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  701 (789)
                      ++.++.||||+|+++..  +.+..++.|+.|||++|.++ .+|. ..... .|+.|.+++|.++..  ..+.+|.+|+.|
T Consensus       186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~L  259 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGL  259 (1096)
T ss_pred             HHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhcc
Confidence            45569999999999854  37889999999999999998 4443 23343 499999999999854  568899999999


Q ss_pred             eccCCcccccCCCC--CccccccccccCCCCCCCCC
Q 042537          702 NLSYNNLSGKIPLG--TQLQSFNASVYAGNPELCGL  735 (789)
Q Consensus       702 ~ls~N~l~~~~p~~--~~~~~~~~~~~~~n~~lc~~  735 (789)
                      |+++|-+++--...  ..+..+....++|||.-|.+
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            99999887642221  23445566778999998864

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.42  E-value=1.1e-08  Score=86.34  Aligned_cols=57  Identities=33%  Similarity=0.447  Sum_probs=29.9

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCccc
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFV  685 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  685 (789)
                      +.|++++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            44555555555 44555555555555555555554 34444444555555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.40  E-value=3.1e-07  Score=106.43  Aligned_cols=102  Identities=22%  Similarity=0.164  Sum_probs=44.2

Q ss_pred             CcEEEccCCC--CcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhh
Q 042537          205 LVVLDLDSNL--LQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVF  282 (789)
Q Consensus       205 L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  282 (789)
                      |+.|-+..|.  +..+..+.|..++.|+.|||+          +|.=.+.+|..++.+-+|++|++++..+. .+|. .+
T Consensus       547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs----------~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l  614 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS----------GNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GL  614 (889)
T ss_pred             cceEEEeecchhhhhcCHHHHhhCcceEEEECC----------CCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HH
Confidence            4444444443  333333334444445544444          23223334444455555555555555444 4444 24


Q ss_pred             hcCCCCcEEEccCCcccccccCCCCCcccceeEecc
Q 042537          283 SELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLG  318 (789)
Q Consensus       283 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  318 (789)
                      .+++.|.+|++..+.-....+.....+.+|++|.+.
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             HHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            455555555554443332222333334444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=4.3e-08  Score=93.86  Aligned_cols=41  Identities=34%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             CCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCc
Q 042537          125 RLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPII  166 (789)
Q Consensus       125 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  166 (789)
                      .||+||||...|+.. .+-..+..+.+|+.|.+.++++...+
T Consensus       186 Rlq~lDLS~s~it~s-tl~~iLs~C~kLk~lSlEg~~LdD~I  226 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVS-TLHGILSQCSKLKNLSLEGLRLDDPI  226 (419)
T ss_pred             hhHHhhcchhheeHH-HHHHHHHHHHhhhhccccccccCcHH
Confidence            355566655555432 23334455555555555555554433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=1e-06  Score=84.66  Aligned_cols=88  Identities=27%  Similarity=0.261  Sum_probs=50.0

Q ss_pred             CCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhh
Q 042537          122 NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNI  201 (789)
Q Consensus       122 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~  201 (789)
                      ..+.++.|||.+|.|+...++...+.++|.|++|+++.|++...+....  ...  .+|+.|-|.+..+.-.-...+..-
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~--~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPL--KNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccc--cceEEEEEcCCCCChhhhhhhhhc
Confidence            3556677777777777655555666777777777777777665443110  122  566666666555543333333333


Q ss_pred             cCCCcEEEccCC
Q 042537          202 SSKLVVLDLDSN  213 (789)
Q Consensus       202 ~~~L~~L~Ls~n  213 (789)
                      .|.++.|.++.|
T Consensus       145 lP~vtelHmS~N  156 (418)
T KOG2982|consen  145 LPKVTELHMSDN  156 (418)
T ss_pred             chhhhhhhhccc
Confidence            345555555555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.19  E-value=6.3e-07  Score=84.88  Aligned_cols=93  Identities=24%  Similarity=0.267  Sum_probs=55.2

Q ss_pred             cccCCCCCCEEeCCCCCCCCC---CCcccccCCCCCCEEecCCCcC---CCCCC-------ccccCCCCCcEEeccCccC
Q 042537           70 SLLKLYHLRHLDLSENDFSGS---RIPEFIGSLNKLRYLSLSSAEF---EGPIP-------SQLGNLSRLKYLDLSYINL  136 (789)
Q Consensus        70 ~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~Ls~n~i---~~~~p-------~~~~~l~~L~~L~Ls~n~l  136 (789)
                      .+..+..++.+|||+|.|...   .+...+.+-++|+..++|.--.   ...++       .++-++++|+..+||.|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            345577888899999888643   1233455667788877775321   11222       2345667777777777765


Q ss_pred             CCC--cchHHhhCCCCCCCEEEcCCCCC
Q 042537          137 NKS--RDWLRIIDKLPSLRTLNLEHCHL  162 (789)
Q Consensus       137 ~~~--~~~~~~l~~l~~L~~L~L~~n~l  162 (789)
                      ..-  +.+-+.+++-+.|++|.+++|.+
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCC
Confidence            431  22334556666677777766654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=4.4e-07  Score=87.07  Aligned_cols=215  Identities=18%  Similarity=0.145  Sum_probs=128.5

Q ss_pred             CCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcC
Q 042537          124 SRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISS  203 (789)
Q Consensus       124 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~  203 (789)
                      .-++.|-+.++.|....+.-..-...+.++.+||.+|.|+....-.....++  +.|+.|+++.|.+...|...-... .
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~l--P~l~~LNls~N~L~s~I~~lp~p~-~  121 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQL--PALTTLNLSCNSLSSDIKSLPLPL-K  121 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcC--ccceEeeccCCcCCCccccCcccc-c
Confidence            3455566666666655443333356789999999999987543322233445  999999999999876543321122 3


Q ss_pred             CCcEEEccCCCCccc-CchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccCh-hh
Q 042537          204 KLVVLDLDSNLLQGS-LLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTE-SV  281 (789)
Q Consensus       204 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~  281 (789)
                      +|++|-|.+..+.-. ....+..++.++.|.++.|.++.+.+..+.+....+.       +++|.+..|........ ..
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~-------v~tlh~~~c~~~~w~~~~~l  194 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTE-------VLTLHQLPCLEQLWLNKNKL  194 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchh-------hhhhhcCCcHHHHHHHHHhH
Confidence            899999988876522 2334677899999999999999998888876654332       33333333322100000 01


Q ss_pred             hhcCCCCcEEEccCCcccccc-cCCCCCcccceeEeccCccCCCC-CchhccCCCCccEEEccCCcCCC
Q 042537          282 FSELSNLKALHLDDNSFTLKF-SHDWIPPFQLIIILLGSCQMGPH-FPKWLQTQNQIEVLDISDAGISD  348 (789)
Q Consensus       282 ~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~ls~n~i~~  348 (789)
                      -.-+|++..+.+..|++.... ...+.+.+.+.-|+++.+++..- .-+.+.++++|..|.++++.+.+
T Consensus       195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            223567777777777775432 23344445555566666555431 12345566666666666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.12  E-value=2e-07  Score=78.93  Aligned_cols=86  Identities=19%  Similarity=0.356  Sum_probs=72.7

Q ss_pred             eeEEEcccCccccccchhhh-ccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEecc
Q 042537          626 VKILDFSMNKLSGTIPEEIM-DLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS  704 (789)
Q Consensus       626 L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  704 (789)
                      |+..+|++|.+. ..|+.|. ..+.++.|+|++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|-.||..
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            477899999998 5555555 4568999999999999 78888999999999999999998 667788889999999999


Q ss_pred             CCcccccCCCC
Q 042537          705 YNNLSGKIPLG  715 (789)
Q Consensus       705 ~N~l~~~~p~~  715 (789)
                      +|.+. +||..
T Consensus       132 ~na~~-eid~d  141 (177)
T KOG4579|consen  132 ENARA-EIDVD  141 (177)
T ss_pred             CCccc-cCcHH
Confidence            99875 66654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.09  E-value=9.6e-07  Score=83.66  Aligned_cols=119  Identities=14%  Similarity=0.160  Sum_probs=77.5

Q ss_pred             CCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCC--CC-------cccccCCCCCCEEecCCCcCCCCC
Q 042537           46 TGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGS--RI-------PEFIGSLNKLRYLSLSSAEFEGPI  116 (789)
Q Consensus        46 ~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~--~~-------~~~~~~l~~L~~L~Ls~n~i~~~~  116 (789)
                      ...++.+|||++..+..-...+...+.+-++|+..++|.-.....  .+       ...+.+|++|+..+||.|.|....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            346789999994333333334556777888999998886432110  12       234667899999999999887655


Q ss_pred             Ccc----ccCCCCCcEEeccCccCCCCc--chHH---------hhCCCCCCCEEEcCCCCCCC
Q 042537          117 PSQ----LGNLSRLKYLDLSYINLNKSR--DWLR---------IIDKLPSLRTLNLEHCHLPP  164 (789)
Q Consensus       117 p~~----~~~l~~L~~L~Ls~n~l~~~~--~~~~---------~l~~l~~L~~L~L~~n~l~~  164 (789)
                      |..    +++-+.|++|.|++|.+..+.  .+..         ...+-|.|++.....|++..
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence            543    567789999999999876541  1211         12344677777777776643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=4.8e-06  Score=57.21  Aligned_cols=37  Identities=32%  Similarity=0.504  Sum_probs=18.0

Q ss_pred             CCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCC
Q 042537          101 KLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNK  138 (789)
Q Consensus       101 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~  138 (789)
                      +|++|++++|+|+ .+|..+++|++|++|++++|++++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            4555555555555 334345555555555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.95  E-value=6.8e-06  Score=56.46  Aligned_cols=17  Identities=35%  Similarity=0.598  Sum_probs=6.6

Q ss_pred             cccCCCCCEEeCCCCcc
Q 042537          668 IDQLKSLDFLDLSQNQF  684 (789)
Q Consensus       668 ~~~l~~L~~L~Ls~N~l  684 (789)
                      ++++++|+.|++++|++
T Consensus        20 l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen   20 LSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             GTTCTTSSEEEETSSCC
T ss_pred             HhCCCCCCEEEecCCCC
Confidence            33333333333333333

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.83  E-value=4.1e-05  Score=79.64  Aligned_cols=76  Identities=13%  Similarity=0.152  Sum_probs=51.9

Q ss_pred             ccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCC-cccccCCCCccCCCc
Q 042537          474 MGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN-KFHGNIPFQVCQLSY  552 (789)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~  552 (789)
                      +..+..++.|++++|.++ .+|.   -..+|++|.+++|.-...+|..+.   ++|+.|++++| .+. .+|      .+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sLP------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GLP------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-ccc------cc
Confidence            444678999999999877 4452   234799999988544347776543   58899999988 444 344      34


Q ss_pred             CceEeccCCcc
Q 042537          553 IQILDLSLNNI  563 (789)
Q Consensus       553 L~~L~Ls~N~l  563 (789)
                      |+.|+++++..
T Consensus       114 Le~L~L~~n~~  124 (426)
T PRK15386        114 VRSLEIKGSAT  124 (426)
T ss_pred             cceEEeCCCCC
Confidence            77777776554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.71  E-value=0.00012  Score=76.10  Aligned_cols=144  Identities=17%  Similarity=0.209  Sum_probs=88.7

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCc-cCCCCcchHHhhCC
Q 042537           70 SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYI-NLNKSRDWLRIIDK  148 (789)
Q Consensus        70 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~l~~  148 (789)
                      .+..+.+++.|++++|.++  .+|. +  ..+|++|+++++.--..+|+.+.  .+|++|++++| .+..   +|     
T Consensus        47 r~~~~~~l~~L~Is~c~L~--sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s---LP-----  111 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE--SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG---LP-----  111 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc--ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc---cc-----
Confidence            3555688999999999887  4562 2  34699999988543336676553  58999999988 5443   33     


Q ss_pred             CCCCCEEEcCCCCCCC--CccccccccccCCCCCCeEEccCCCCC--CCchhHHHhhcCCCcEEEccCCCCcccCchhhh
Q 042537          149 LPSLRTLNLEHCHLPP--IIPSDLLHLNFSTSSLGALYLFENSLS--SSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFD  224 (789)
Q Consensus       149 l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~~~L~~L~l~~n~l~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~  224 (789)
                       ..|+.|+++++....  ..|          ++|+.|.+.+++..  ..++   ..+++.|++|++++|... ..|..+.
T Consensus       112 -~sLe~L~L~~n~~~~L~~LP----------ssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP  176 (426)
T PRK15386        112 -ESVRSLEIKGSATDSIKNVP----------NGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP  176 (426)
T ss_pred             -cccceEEeCCCCCcccccCc----------chHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc
Confidence             357777777665432  223          57777777543211  1111   123357888888888755 2333332


Q ss_pred             cCCCCcEEECCCCCccEEecC
Q 042537          225 RMVSLRTLYLGFNELEELFLG  245 (789)
Q Consensus       225 ~l~~L~~L~L~~n~L~~L~L~  245 (789)
                        .+|+.|.++.+..+.+.+.
T Consensus       177 --~SLk~L~ls~n~~~sLeI~  195 (426)
T PRK15386        177 --ESLQSITLHIEQKTTWNIS  195 (426)
T ss_pred             --ccCcEEEecccccccccCc
Confidence              4778888876554444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.66  E-value=8.9e-05  Score=67.75  Aligned_cols=103  Identities=21%  Similarity=0.271  Sum_probs=65.3

Q ss_pred             CCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCch--hhhhcCCCCcEE
Q 042537          455 RLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPT--WIGEGLPKLVVL  532 (789)
Q Consensus       455 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~--~~~~~l~~L~~L  532 (789)
                      +...+||++|.+...  ..|..++.|.+|.+++|+|+.+.|..-.-+++|..|.+.+|.|. .+.+  .+. .+|+|++|
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa-~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLA-SCPKLEYL  118 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhc-cCCcccee
Confidence            455666666666532  34666677777777777777666655555666777777777665 3221  122 47788888


Q ss_pred             EcCCCcccccCC---CCccCCCcCceEeccCC
Q 042537          533 SLKSNKFHGNIP---FQVCQLSYIQILDLSLN  561 (789)
Q Consensus       533 ~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~N  561 (789)
                      .+-+|++...-.   ..+..+++|+.||.+.=
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            888887763321   13567888888888764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.54  E-value=4.4e-06  Score=84.36  Aligned_cols=14  Identities=36%  Similarity=0.639  Sum_probs=7.2

Q ss_pred             CCCCCCCEEEcCCC
Q 042537          147 DKLPSLRTLNLEHC  160 (789)
Q Consensus       147 ~~l~~L~~L~L~~n  160 (789)
                      ..+++|++|+++.|
T Consensus       213 ~gC~kL~~lNlSwc  226 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWC  226 (483)
T ss_pred             HhhhhHHHhhhccC
Confidence            34555555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.52  E-value=3.2e-05  Score=87.69  Aligned_cols=87  Identities=23%  Similarity=0.342  Sum_probs=51.8

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCC
Q 042537           72 LKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPS  151 (789)
Q Consensus        72 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  151 (789)
                      ..||+|+.|.+++-.+....+-....++++|+.||+|+..++..  ..+++|++||+|.+.+-.+..-.++ ..+-+|++
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l-~~LF~L~~  221 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDL-IDLFNLKK  221 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhH-HHHhcccC
Confidence            35667777777665554332334445667777777777766633  5566677777776666555543222 34445667


Q ss_pred             CCEEEcCCCC
Q 042537          152 LRTLNLEHCH  161 (789)
Q Consensus       152 L~~L~L~~n~  161 (789)
                      |++||+|...
T Consensus       222 L~vLDIS~~~  231 (699)
T KOG3665|consen  222 LRVLDISRDK  231 (699)
T ss_pred             CCeeeccccc
Confidence            7777766654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.52  E-value=0.00016  Score=66.06  Aligned_cols=111  Identities=20%  Similarity=0.178  Sum_probs=65.6

Q ss_pred             CCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhh
Q 042537          204 KLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFS  283 (789)
Q Consensus       204 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  283 (789)
                      ....+||++|.+...  ..|..++.|.+|.+++|+|+.+          .|.--.-+++|..|.|.+|.|.....-.-+.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I----------~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa  110 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRI----------DPDLDTFLPNLKTLILTNNSIQELGDLDPLA  110 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceee----------ccchhhhccccceEEecCcchhhhhhcchhc
Confidence            556677777776532  3566677777777774444433          3333334566777777777776322222366


Q ss_pred             cCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCC
Q 042537          284 ELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGIS  347 (789)
Q Consensus       284 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~  347 (789)
                      .+|+|++|.+-+|+++....                     --...+..+++|+.||+..-.-.
T Consensus       111 ~~p~L~~Ltll~Npv~~k~~---------------------YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  111 SCPKLEYLTLLGNPVEHKKN---------------------YRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             cCCccceeeecCCchhcccC---------------------ceeEEEEecCcceEeehhhhhHH
Confidence            67777777777777653211                     11123556788888888765544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.50  E-value=0.00028  Score=62.72  Aligned_cols=121  Identities=16%  Similarity=0.183  Sum_probs=43.1

Q ss_pred             ccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCC
Q 042537          449 CWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPK  528 (789)
Q Consensus       449 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~  528 (789)
                      +|.++.+|+.+.+.. .+..+...+|..+++|+.+.+.++ +..+....|.++++++.+.+.+ .+. .++...+..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence            344444555555543 344344444555555555555443 4434444455555555555543 332 344444434555


Q ss_pred             CcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccccccc
Q 042537          529 LVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTG  576 (789)
Q Consensus       529 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  576 (789)
                      |+.+++..+ +.......|.+. .|+.+.+.. .+..+...+|.++++
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~  127 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK  127 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence            555555443 333333444444 555555543 333333444444433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.47  E-value=6.1e-05  Score=85.40  Aligned_cols=159  Identities=18%  Similarity=0.264  Sum_probs=76.0

Q ss_pred             CCCCEEecCCCcC-CCCCCcccc-CCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCC
Q 042537          100 NKLRYLSLSSAEF-EGPIPSQLG-NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFST  177 (789)
Q Consensus       100 ~~L~~L~Ls~n~i-~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  177 (789)
                      .+|++||+++... ....|..++ .+|.|+.|.+++-.+... ++-....++|+|..||+|+++++..    ....++  
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~L--  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL----SGISRL--  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc----HHHhcc--
Confidence            4566666666432 112222332 356666666665544432 2334455666666666666665543    122222  


Q ss_pred             CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcc-cCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhh
Q 042537          178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG-SLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQW  256 (789)
Q Consensus       178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~  256 (789)
                      ++|+.|.+                         .+=.+.. ..-..+.+|++|+.||+|...-..    ...+....-+.
T Consensus       195 knLq~L~m-------------------------rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~----~~~ii~qYlec  245 (699)
T KOG3665|consen  195 KNLQVLSM-------------------------RNLEFESYQDLIDLFNLKKLRVLDISRDKNND----DTKIIEQYLEC  245 (699)
T ss_pred             ccHHHHhc-------------------------cCCCCCchhhHHHHhcccCCCeeecccccccc----chHHHHHHHHh
Confidence            44444443                         3333321 111234456666666665332110    00010011111


Q ss_pred             hhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEcc
Q 042537          257 LSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLD  294 (789)
Q Consensus       257 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  294 (789)
                      -..+|+|+.||.|++.+.+.+-...+..-++|+.+..-
T Consensus       246 ~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  246 GMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             cccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            23477888888888877765555445555666655543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.40  E-value=0.00046  Score=61.34  Aligned_cols=118  Identities=15%  Similarity=0.196  Sum_probs=67.3

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      ++|+.+.+.. .+......+|.++++|+.+.+.++ +......+|..+++++.+.+.+ .+.......|..+++++.+++
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            5788888875 566566778888888999998875 6666667888888899999876 445466677888899999998


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQ  554 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  554 (789)
                      ..+ +. .++...+.+. +|+.+.+.. .+..+....|.++++|+
T Consensus        89 ~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   89 PSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             Ccc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            775 55 6777777665 888888876 44445556676666653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.38  E-value=0.00013  Score=69.87  Aligned_cols=95  Identities=22%  Similarity=0.298  Sum_probs=57.5

Q ss_pred             cccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCC--cCCCCCCccccCCCCCcEEeccCccCCCCcch
Q 042537           65 GTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSA--EFEGPIPSQLGNLSRLKYLDLSYINLNKSRDW  142 (789)
Q Consensus        65 ~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~  142 (789)
                      |.+....-.+..|+.|++.+..++..   ..+..+++|+.|.+|.|  ++.+-++--..++++|++|++++|+++.+..+
T Consensus        33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl  109 (260)
T KOG2739|consen   33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL  109 (260)
T ss_pred             CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence            33444455566666666666666532   23456777788888877  55544444445567777777777777654332


Q ss_pred             HHhhCCCCCCCEEEcCCCCCC
Q 042537          143 LRIIDKLPSLRTLNLEHCHLP  163 (789)
Q Consensus       143 ~~~l~~l~~L~~L~L~~n~l~  163 (789)
                       ..+..+.+|..|++..|..+
T Consensus       110 -~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  110 -RPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             -chhhhhcchhhhhcccCCcc
Confidence             34455666666666666543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.89  E-value=0.00024  Score=72.18  Aligned_cols=139  Identities=14%  Similarity=0.007  Sum_probs=72.8

Q ss_pred             CCCCCCEEEccCCCCCCccCh-hhhhcCCCCcEEEccCCcc-cccccCCC-CCcccceeEeccCccCCC--CCchhccCC
Q 042537          259 RMYKLDALSLSGNSLTGVVTE-SVFSELSNLKALHLDDNSF-TLKFSHDW-IPPFQLIIILLGSCQMGP--HFPKWLQTQ  333 (789)
Q Consensus       259 ~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~i-~~~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~l~~l  333 (789)
                      .+..|+.|+.+++.-.+..+. ..-.+..+|+.+-++.++- +......+ ...+.|+.+++..|....  .+...-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            456777777776543222211 1233567777777777653 11111111 234567777777665432  222223457


Q ss_pred             CCccEEEccCCc-CCCCcchhHhh---hccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCccc
Q 042537          334 NQIEVLDISDAG-ISDTVPDWFWD---LSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFE  397 (789)
Q Consensus       334 ~~L~~L~ls~n~-i~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~  397 (789)
                      +.|+.+.++++. |++.....+..   ....+..+.+++++.+..-.-..+..+++|+.+++-+++-.
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV  439 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence            778888877774 33331112211   12356677777776543222224556677888777776543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.85  E-value=0.00071  Score=64.89  Aligned_cols=79  Identities=24%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             CceeEEEcccC--ccccccchhhhccccCcEEEccCCcceeecCcc---cccCCCCCEEeCCCCcccccCc---hhhhcC
Q 042537          624 GLVKILDFSMN--KLSGTIPEEIMDLVGLVALNLSRNNLTGQITPK---IDQLKSLDFLDLSQNQFVGGIP---SSLCQL  695 (789)
Q Consensus       624 ~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l  695 (789)
                      ++|+.|++|.|  ++.+..+-....+++|++|+|++|+|..  +..   +..+.+|.+||+.+|..++.--   ..|.-+
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll  142 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL  142 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence            44566677776  5554444444555778888888887752  333   3556677788888887765432   345566


Q ss_pred             CCCCeEecc
Q 042537          696 SRLSVMNLS  704 (789)
Q Consensus       696 ~~L~~L~ls  704 (789)
                      ++|++||-.
T Consensus       143 ~~L~~LD~~  151 (260)
T KOG2739|consen  143 PSLKYLDGC  151 (260)
T ss_pred             hhhcccccc
Confidence            777777543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.00011  Score=70.38  Aligned_cols=84  Identities=24%  Similarity=0.267  Sum_probs=58.2

Q ss_pred             CCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhh
Q 042537          204 KLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFS  283 (789)
Q Consensus       204 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  283 (789)
                      +.++|++.++.+..+  .-..+++.|+.|.|+-|++..|            ..|..|++|++|+|..|.|...-.-..+.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL------------~pl~rCtrLkElYLRkN~I~sldEL~YLk   85 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL------------APLQRCTRLKELYLRKNCIESLDELEYLK   85 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc------------hhHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence            566777777777644  3455677788888776555544            23677888888888888887444444577


Q ss_pred             cCCCCcEEEccCCccccc
Q 042537          284 ELSNLKALHLDDNSFTLK  301 (789)
Q Consensus       284 ~l~~L~~L~L~~n~i~~~  301 (789)
                      ++++|+.|.|..|+-.+.
T Consensus        86 nlpsLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGE  103 (388)
T ss_pred             cCchhhhHhhccCCcccc
Confidence            888888888888876543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.81  E-value=0.00088  Score=64.37  Aligned_cols=40  Identities=25%  Similarity=0.350  Sum_probs=22.5

Q ss_pred             CCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCc
Q 042537          123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPII  166 (789)
Q Consensus       123 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  166 (789)
                      +.+.+.|++.+|.+.++    ....+++.|+.|.|+-|.|+...
T Consensus        18 l~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL~   57 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSLA   57 (388)
T ss_pred             HHHhhhhcccCCCccHH----HHHHhcccceeEEeeccccccch
Confidence            34445555666665554    34455666666666666665443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.53  E-value=0.0036  Score=70.06  Aligned_cols=16  Identities=19%  Similarity=0.202  Sum_probs=8.4

Q ss_pred             hhcCCCCcEEEccCCc
Q 042537          282 FSELSNLKALHLDDNS  297 (789)
Q Consensus       282 ~~~l~~L~~L~L~~n~  297 (789)
                      ...+++++.+.+..+.
T Consensus       358 ~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HhcCCCcchhhhhhhh
Confidence            4445555555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.50  E-value=0.0069  Score=34.40  Aligned_cols=11  Identities=64%  Similarity=0.649  Sum_probs=4.4

Q ss_pred             cEEEccCCcce
Q 042537          651 VALNLSRNNLT  661 (789)
Q Consensus       651 ~~L~Ls~N~l~  661 (789)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.46  E-value=0.0057  Score=34.75  Aligned_cols=21  Identities=48%  Similarity=0.830  Sum_probs=14.0

Q ss_pred             CCCEEeCCCCcccccCchhhhc
Q 042537          673 SLDFLDLSQNQFVGGIPSSLCQ  694 (789)
Q Consensus       673 ~L~~L~Ls~N~l~~~~p~~l~~  694 (789)
                      +|++|||++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677777777777 56655554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.66  E-value=0.00069  Score=73.60  Aligned_cols=188  Identities=25%  Similarity=0.195  Sum_probs=117.1

Q ss_pred             EEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCc---ccccCC-CCCCEEecCCCcCCCC----CCccc
Q 042537           49 VIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIP---EFIGSL-NKLRYLSLSSAEFEGP----IPSQL  120 (789)
Q Consensus        49 v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~~l-~~L~~L~Ls~n~i~~~----~p~~~  120 (789)
                      ..++.|..+.....-...+-..+....+|..|++++|.+......   ..+... ..|++|++..|.+++.    +++.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            566777774332222233445677788899999999988743111   122222 4577788888877643    44556


Q ss_pred             cCCCCCcEEeccCccCCCC--cchHHhhC----CCCCCCEEEcCCCCCCCCcccc--ccccccCCCC-CCeEEccCCCCC
Q 042537          121 GNLSRLKYLDLSYINLNKS--RDWLRIID----KLPSLRTLNLEHCHLPPIIPSD--LLHLNFSTSS-LGALYLFENSLS  191 (789)
Q Consensus       121 ~~l~~L~~L~Ls~n~l~~~--~~~~~~l~----~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~~~-L~~L~l~~n~l~  191 (789)
                      .....++.++++.|.+...  ..++..+.    ...++++|++++|.++......  ......  ++ +.++++..|.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~--~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASG--ESLLRELDLASNKLG  246 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhcc--chhhHHHHHHhcCcc
Confidence            6788899999999887532  11333444    4778999999999876332211  111111  33 667888888877


Q ss_pred             CCchhHH----HhhcCCCcEEEccCCCCcccCchh----hhcCCCCcEEECCCCC
Q 042537          192 SSIYPWL----FNISSKLVVLDLDSNLLQGSLLEP----FDRMVSLRTLYLGFNE  238 (789)
Q Consensus       192 ~~~~~~~----~~~~~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~n~  238 (789)
                      ......+    ......+++++++.|.|+......    +..++.++.+.++.|.
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence            5422222    222246689999999888654443    4556788888898886

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.05  E-value=0.035  Score=62.03  Aligned_cols=83  Identities=25%  Similarity=0.205  Sum_probs=41.2

Q ss_pred             cCCCcEEEccCCC-CcccCchhhhc-CCCCcEEECCCCCccEEecCCCcCccc-chhhhhCCCCCCEEEccCCCCCCc--
Q 042537          202 SSKLVVLDLDSNL-LQGSLLEPFDR-MVSLRTLYLGFNELEELFLGKNRLNGT-INQWLSRMYKLDALSLSGNSLTGV--  276 (789)
Q Consensus       202 ~~~L~~L~Ls~n~-i~~~~~~~~~~-l~~L~~L~L~~n~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~--  276 (789)
                      .++|+.|+++++. ++...-..+.. +++|+.|.+.++.-         ++.. +......+++|++|+++++.....  
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~---------lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~  312 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSN---------LTDEGLVSIAERCPSLRELDLSGCHGLTDSG  312 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCc---------cchhHHHHHHHhcCcccEEeeecCccchHHH
Confidence            3466777777666 44444344433 56666666553220         2222 122234566677777776654311  


Q ss_pred             cChhhhhcCCCCcEEEcc
Q 042537          277 VTESVFSELSNLKALHLD  294 (789)
Q Consensus       277 ~~~~~~~~l~~L~~L~L~  294 (789)
                      +.. ...++++++.+.+.
T Consensus       313 l~~-~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  313 LEA-LLKNCPNLRELKLL  329 (482)
T ss_pred             HHH-HHHhCcchhhhhhh
Confidence            122 23445555554443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.26  E-value=0.0042  Score=58.23  Aligned_cols=82  Identities=21%  Similarity=0.202  Sum_probs=72.9

Q ss_pred             ceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEecc
Q 042537          625 LVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS  704 (789)
Q Consensus       625 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  704 (789)
                      ..+.||++.|++. ..-..|.-++.|..|+++.|++. ..|..+++...+..+++..|..+ ..|.++..++.+++++.-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            4588999999987 55667888999999999999998 78999999999999999999998 678899999999999999


Q ss_pred             CCccc
Q 042537          705 YNNLS  709 (789)
Q Consensus       705 ~N~l~  709 (789)
                      .|++.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            99874

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.13  E-value=0.0018  Score=60.60  Aligned_cols=87  Identities=16%  Similarity=0.160  Sum_probs=53.3

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCC
Q 042537           70 SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKL  149 (789)
Q Consensus        70 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  149 (789)
                      .+..+...++||++.|++.  .+-.-|..++.|..|+++.|.+. ..|..++.+..++.+++..|..+.   .|..+++.
T Consensus        37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~---~p~s~~k~  110 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ---QPKSQKKE  110 (326)
T ss_pred             hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh---CCcccccc
Confidence            4555666666666666654  23444555666666666666666 566666666666666666665554   45566666


Q ss_pred             CCCCEEEcCCCCC
Q 042537          150 PSLRTLNLEHCHL  162 (789)
Q Consensus       150 ~~L~~L~L~~n~l  162 (789)
                      ++++.+++.++.+
T Consensus       111 ~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  111 PHPKKNEQKKTEF  123 (326)
T ss_pred             CCcchhhhccCcc
Confidence            6666666666543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.77  E-value=0.002  Score=70.03  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=16.4

Q ss_pred             chhccCCCCccEEEccCCcCCCCcc
Q 042537          327 PKWLQTQNQIEVLDISDAGISDTVP  351 (789)
Q Consensus       327 ~~~l~~l~~L~~L~ls~n~i~~~~~  351 (789)
                      ...+..++.++++.++.|.+.+...
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~~~~~  307 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLTDYGV  307 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccccHHH
Confidence            3445566778888888887765433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.92  E-value=0.21  Score=29.59  Aligned_cols=20  Identities=40%  Similarity=0.429  Sum_probs=11.0

Q ss_pred             CCCCEEeCCCCcccccCchh
Q 042537          672 KSLDFLDLSQNQFVGGIPSS  691 (789)
Q Consensus       672 ~~L~~L~Ls~N~l~~~~p~~  691 (789)
                      ++|+.|+|++|+|+...+..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666443333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.92  E-value=0.21  Score=29.59  Aligned_cols=20  Identities=40%  Similarity=0.429  Sum_probs=11.0

Q ss_pred             CCCCEEeCCCCcccccCchh
Q 042537          672 KSLDFLDLSQNQFVGGIPSS  691 (789)
Q Consensus       672 ~~L~~L~Ls~N~l~~~~p~~  691 (789)
                      ++|+.|+|++|+|+...+..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666443333

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.27  E-value=0.16  Score=26.66  Aligned_cols=9  Identities=33%  Similarity=0.438  Sum_probs=3.0

Q ss_pred             cEEeCCCCc
Q 042537          505 ILMDLGKNG  513 (789)
Q Consensus       505 ~~L~ls~n~  513 (789)
                      +.|++++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.88  E-value=0.31  Score=28.86  Aligned_cols=21  Identities=33%  Similarity=0.355  Sum_probs=13.7

Q ss_pred             CCCcEEeCCCCcccccCchhhh
Q 042537          502 SQLILMDLGKNGLSGEIPTWIG  523 (789)
Q Consensus       502 ~~L~~L~ls~n~l~~~~p~~~~  523 (789)
                      ++|++|++++|+|. .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45667777777776 6666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.88  E-value=0.31  Score=28.86  Aligned_cols=21  Identities=33%  Similarity=0.355  Sum_probs=13.7

Q ss_pred             CCCcEEeCCCCcccccCchhhh
Q 042537          502 SQLILMDLGKNGLSGEIPTWIG  523 (789)
Q Consensus       502 ~~L~~L~ls~n~l~~~~p~~~~  523 (789)
                      ++|++|++++|+|. .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45667777777776 6666554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.07  E-value=0.27  Score=28.50  Aligned_cols=15  Identities=47%  Similarity=0.623  Sum_probs=6.1

Q ss_pred             CCCCEEeCCCCcccc
Q 042537          672 KSLDFLDLSQNQFVG  686 (789)
Q Consensus       672 ~~L~~L~Ls~N~l~~  686 (789)
                      ++|++|+|++|+|+.
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            344445555554443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.85  E-value=0.27  Score=45.68  Aligned_cols=84  Identities=25%  Similarity=0.249  Sum_probs=57.9

Q ss_pred             CCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhh-CCCCCCEEEccCCC-CCCccChhh
Q 042537          204 KLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLS-RMYKLDALSLSGNS-LTGVVTESV  281 (789)
Q Consensus       204 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~~~~  281 (789)
                      .++.+|-++..|....-+.+..++.++.|.+.++.         .+....-+.++ -.++|+.|++++|. |+ .-....
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck---------~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~  171 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK---------YFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLAC  171 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc---------chhhHHHHHhcccccchheeeccCCCeec-hhHHHH
Confidence            58889999998887777778888888888887543         11111111122 25689999999885 44 444446


Q ss_pred             hhcCCCCcEEEccCCc
Q 042537          282 FSELSNLKALHLDDNS  297 (789)
Q Consensus       282 ~~~l~~L~~L~L~~n~  297 (789)
                      +..+++|+.|.+.+-+
T Consensus       172 L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HHHhhhhHHHHhcCch
Confidence            7888999999888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	789
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-47
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-46
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-17
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		4e-05
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		5e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 204/699 (29%), Positives = 314/699 (44%), Gaps = 101/699 (14%)
Query: 96  IGSLNKLRYLSLSSA--EFEGPIPSQLGNLSRLKYLDLSYINLNKSR--DWLRIIDKLPS 151
           +GS + L++L++SS   +F G +   L  L+ L+ LDLS  +++ +    W+ + D    
Sbjct: 119 LGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWV-LSDGCGE 176
Query: 152 LRTLNLEHCHLPPIIP-SDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDL 210
           L+ L +    +   +  S  ++L F       L +  N+ S+ I P+L + S+ L  LD+
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNLEF-------LDVSSNNFSTGI-PFLGDCSA-LQHLDI 227
Query: 211 DSNLLQGSLLEPFDRMVSLRTXXXXXXXXXXXXXXKNRLNGTINQWLSR-----MYKLDA 265
             N L G     F R +S  T                 LN + NQ++       +  L  
Sbjct: 228 SGNKLSGD----FSRAISTCTELKL-------------LNISSNQFVGPIPPLPLKSLQY 270
Query: 266 LSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPF-----QLIIILLGSC 320
           LSL+ N  TG + + +      L  L L  N F     +  +PPF      L  + L S 
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-----YGAVPPFFGSCSLLESLALSSN 325
Query: 321 QMGPHFP-KWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGK-LPNL 378
                 P   L     ++VLD+S    S  +P+   +LS ++   +LS+N+  G  LPNL
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 379 SLRXXXXXXXXXXXXNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLS 438
                          N F G IPP  SN S                      +L  L LS
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCS----------------------ELVSLHLS 423
Query: 439 NNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFF 498
            N LSG +P       +L  L L  N   G+IP+ + ++ +++TL L  N L GE+PS  
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 499 KSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDL 558
            +C+ L  + L  N L+GEIP WIG  L  L +L L +N F GNIP ++     +  LDL
Sbjct: 484 SNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 559 SLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHE 618
           + N  +G IP  +   +G   K ++N      Y + +      E +    +L ++G + E
Sbjct: 543 NTNLFNGTIPAAMFKQSG---KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 599
Query: 619 YRSTL------------------------GLVKILDFSMNKLSGTIPEEIMDLVGLVALN 654
             + L                        G +  LD S N LSG IP+EI  +  L  LN
Sbjct: 600 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 659
Query: 655 LSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714
           L  N+++G I  ++  L+ L+ LDLS N+  G IP ++  L+ L+ ++LS NNLSG IP 
Sbjct: 660 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Query: 715 GTQLQSFNASVYAGNPELCGLPLRNKCP-DEDSAASPER 752
             Q ++F  + +  NP LCG PL    P + D  A  +R
Sbjct: 720 MGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQR 758

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  185 bits (469), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 200/683 (29%), Positives = 308/683 (45%), Gaps = 100/683 (14%)
Query: 96  IGSLNKLRYLSLSSA--EFEGPIPSQLGNLSRLKYLDLSYINLNKSR--DWLRIIDKLPS 151
           +GS + L++L++SS   +F G +   L  L+ L+ LDLS  +++ +    W+ + D    
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWV-LSDGCGE 179
Query: 152 LRTLNLEHCHLPPIIP-SDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDL 210
           L+ L +    +   +  S  ++L F       L +  N+ S+ I P+L + S+ L  LD+
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEF-------LDVSSNNFSTGI-PFLGDCSA-LQHLDI 230
Query: 211 DSNLLQGSLLEPFDRMVSLRTXXXXXXXXXXXXXXKNRLNGTINQWLSR-----MYKLDA 265
             N L G     F R +S  T                 LN + NQ++       +  L  
Sbjct: 231 SGNKLSGD----FSRAISTCTELKL-------------LNISSNQFVGPIPPLPLKSLQY 273
Query: 266 LSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPF-----QLIIILLGSC 320
           LSL+ N  TG + + +      L  L L  N F     +  +PPF      L  + L S 
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-----YGAVPPFFGSCSLLESLALSSN 328
Query: 321 QMGPHFP-KWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGK-LPNL 378
                 P   L     ++VLD+S    S  +P+   +LS ++   +LS+N+  G  LPNL
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 379 SLRXXXXXXXXXXXXNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLS 438
                          N F G IPP  SN S                      +L  L LS
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCS----------------------ELVSLHLS 426
Query: 439 NNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFF 498
            N LSG +P       +L  L L  N   G+IP+ + ++ +++TL L  N L GE+PS  
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 499 KSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDL 558
            +C+ L  + L  N L+GEIP WIG  L  L +L L +N F GNIP ++     +  LDL
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 559 SLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHE 618
           + N  +G IP  +   +G   K ++N      Y + +      E +    +L ++G + E
Sbjct: 546 NTNLFNGTIPAAMFKQSG---KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602
Query: 619 YRSTL------------------------GLVKILDFSMNKLSGTIPEEIMDLVGLVALN 654
             + L                        G +  LD S N LSG IP+EI  +  L  LN
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 655 LSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714
           L  N+++G I  ++  L+ L+ LDLS N+  G IP ++  L+ L+ ++LS NNLSG IP 
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Query: 715 GTQLQSFNASVYAGNPELCGLPL 737
             Q ++F  + +  NP LCG PL
Sbjct: 723 MGQFETFPPAKFLNNPGLCGYPL 745

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 107/251 (42%), Gaps = 49/251 (19%)
Query: 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPK 569
           G N L G IP  I + L +L  L +      G IP  + Q+  +  LD S N +SG +P 
Sbjct: 85  GINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143
Query: 570 CLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKIL 629
            +++   +                   GI F  + +   +         Y S   L   +
Sbjct: 144 SISSLPNLV------------------GITFDGNRISGAI------PDSYGSFSKLFTSM 179
Query: 630 DFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQIT-----------------------P 666
             S N+L+G IP    +L  L  ++LSRN L G  +                        
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 667 KIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVY 726
           K+   K+L+ LDL  N+  G +P  L QL  L  +N+S+NNL G+IP G  LQ F+ S Y
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298
Query: 727 AGNPELCGLPL 737
           A N  LCG PL
Sbjct: 299 ANNKCLCGSPL 309

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 127/313 (40%), Gaps = 44/313 (14%)
Query: 403 LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLA 462
           LPSN +VLNL+ N+    +         +L  LD   N +S   P+       L VL+L 
Sbjct: 23  LPSNITVLNLTHNQLRR-LPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 463 NNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWI 522
           +N  S    ++  F  ++  L L +NS+     + FK+   LI +DL  NGLS    T +
Sbjct: 82  HNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS---TKL 138
Query: 523 GEGL----------PKLVVLSLKSN--KFHGNIPFQVCQLSYIQILDLSLNNISGIIPKC 570
           G G+           K  +L+L+S   +F GN        S ++ LDLS N +    P C
Sbjct: 139 GTGVQLENLQELLLAKNKILALRSEELEFLGN--------SSLRKLDLSSNPLKEFSPGC 190
Query: 571 LNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILD 630
                 +     +N  +  + T E+   E   + + N+             +L   ++L 
Sbjct: 191 FQTIGKLFALLLNNAQLNPHLT-EKLCWELSNTSIQNL-------------SLANNQLLA 236
Query: 631 FSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPS 690
            S +  SG      +    L  L+LS NNL          L SL +L L  N      P 
Sbjct: 237 TSESTFSG------LKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 691 SLCQLSRLSVMNL 703
           S   LS L  ++L
Sbjct: 291 SFYGLSNLRYLSL 303

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 118/532 (22%), Positives = 204/532 (38%), Gaps = 89/532 (16%)
Query: 256 WLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIII 315
           +   +  L  L LS N +  +     F +L++LK++    N   L   H+ + P Q   +
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTL 176
Query: 316 LLGSCQMGPHFPK----WLQTQNQ-----IEVLDISDAGISDTVPDWFWD---------- 356
              S      + +    W +  N      +E+LD+S  G +  +   F +          
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236
Query: 357 -LSHTIADFNLSNNHIK-------GKLPNLSLRXXXXXXXXXXXXN--YFEGLIPPLPSN 406
            L+H I       ++IK         L   S+R            N   FE L      +
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-----KD 291
Query: 407 ASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFF 466
             VLNL+ NK ++ I+         L+ L+LS N+L       +    ++A + L  N  
Sbjct: 292 LKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 467 SGKIPKSMGFLHSIQTLSLYNNSL-----IGELPSFFKSCSQLILMDLGKNGLSGEIPTW 521
           +    ++  FL  +QTL L +N+L     I  +P  F S ++L+   L K  L+  +   
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV--TLPKINLTANL--- 405
Query: 522 IGEGLPKLVVLSLKSNKFHG-NIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQK 580
                     + L  N+    +I + + ++ ++QIL L+ N  S     C  + T     
Sbjct: 406 ----------IHLSENRLENLDILYFLLRVPHLQILILNQNRFSS----CSGDQTPSENP 451
Query: 581 SSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQH-EYRSTLGLVKILDFSMNKLSGT 639
           S   L +  N                 + L W+     +    L  +++L  + N L+  
Sbjct: 452 SLEQLFLGENM----------------LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495
Query: 640 IPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLS 699
            P     L  L  L+L+ N LT  +    D   +L+ LD+S+NQ +   P        LS
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLT--VLSHNDLPANLEILDISRNQLLAPNPDVFVS---LS 550
Query: 700 VMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKC--PDEDSAAS 749
           V+++++N    +  L T +   N +    N  + G P    C  PD  S  S
Sbjct: 551 VLDITHNKFICECELSTFINWLNHT----NVTIAGPPADIYCVYPDSFSGVS 598

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	789
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-169
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-69
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  505 bits (1304), Expect = e-169
 Identities = 200/802 (24%), Positives = 314/802 (39%), Gaps = 103/802 (12%)

Query: 2   EEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSE 61
             E   L+ FK  L D+  +L  W      ++ C + GV C +    V  +DL     + 
Sbjct: 11  YREIHQLISFKDVLPDK-NLLPDW---SSNKNPCTFDGVTCRD--DKVTSIDLSSKPLNV 64

Query: 62  PLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLG 121
                +S SLL L  L  L LS +  +GS +  F                          
Sbjct: 65  GF-SAVSSSLLSLTGLESLFLSNSHINGS-VSGF-------------------------K 97

Query: 122 NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLG 181
             + L  LDLS  +L+     L  +     L+ LN+    L               +SL 
Sbjct: 98  CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG---LKLNSLE 154

Query: 182 ALYLFENSLSSSIYPWLFNIS--SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN-- 237
            L L  NS+S +            +L  L +  N + G +     R V+L  L +  N  
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNF 212

Query: 238 -----------ELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELS 286
                       L+ L +  N+L+G  ++ +S   +L  L++S N   G +       L 
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLK 269

Query: 287 NLKALHLDDNSFTLKFSHDWIPPF------QLIIILLGSCQMGPHFPKWLQTQNQIEVLD 340
           +L+ L L +N FT       IP F       L  + L         P +  + + +E L 
Sbjct: 270 SLQYLSLAENKFT-----GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 341 ISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLI 400
           +S    S  +P         +   +LS N   G+LP           ++D+SSN F G I
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 401 PP-----LPSNASVLNLSRNKFSESI-SFLCSINGHKLEFLDLSNNILSGRLPDCWMQFD 454
            P       +    L L  N F+  I   L   N  +L  L LS N LSG +P       
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLS--NCSELVSLHLSFNYLSGTIPSSLGSLS 442

Query: 455 RLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGL 514
           +L  L L  N   G+IP+ + ++ +++TL L  N L GE+PS   +C+ L  + L  N L
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502

Query: 515 SGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNF 574
           +GEIP WIG  L  L +L L +N F GNIP ++     +  LDL+ N  +G IP  +   
Sbjct: 503 TGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561

Query: 575 TGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMN 634
           +G     ++N      Y + +      E +    +L ++G + E  + L      + +  
Sbjct: 562 SGKI---AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618

Query: 635 KLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQ 694
              G       +   ++ L++S N L+G I  +I  +  L  L+L  N   G IP  +  
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678

Query: 695 LSRLSVMNLSYNNLS------------------------GKIPLGTQLQSFNASVYAGNP 730
           L  L++++LS N L                         G IP   Q ++F  + +  NP
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738

Query: 731 ELCGLPLRNKCPDEDSAASPER 752
            LCG PL    P      +  +
Sbjct: 739 GLCGYPLPRCDPSNADGYAHHQ 760

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  261 bits (669), Expect = 7e-77
 Identities = 132/694 (19%), Positives = 231/694 (33%), Gaps = 79/694 (11%)

Query: 77  LRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINL 136
               D S      +++P+ +     +  L+L+  +      +     S+L  LD+ +  +
Sbjct: 6   HEVADCSHLKL--TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 137 NKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYP 196
           +K      +  KLP L+ LNL+H  L  +            ++L  L+L  NS+      
Sbjct: 62  SKLEP--ELCQKLPMLKVLNLQHNELSQLSDKTFAFC----TNLTELHLMSNSIQKIK-N 114

Query: 197 WLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN----------------ELE 240
             F     L+ LDL  N L  + L    ++ +L+ L L  N                 L+
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 241 ELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSE--LSNLKALHLDDNSF 298
           +L L  N++          + +L  L L+   L   +TE +  E   ++++ L L ++  
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 299 TLKFSHDWI---PPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFW 355
           +   S+          L ++ L    +            Q+E   +    I         
Sbjct: 235 S-TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 356 DLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRN 415
            L + +   NL  +  K  +   SL          I    F+ L          LN+  N
Sbjct: 294 GLFN-VRYLNLKRSFTKQSISLASLP--------KIDDFSFQWL-----KCLEHLNMEDN 339

Query: 416 KFSESISFLCSINGHKLEFLDLSNNILSGRLPDCW----MQFDRLAVLSLANNFFSGKIP 471
                 S + +     L++L LSN+  S R         +    L +L+L  N  S    
Sbjct: 340 DIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 472 KSMGFLHSIQTLSLYNNSLIGELP-SFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLV 530
            +  +L  ++ L L  N +  EL    ++    +  + L  N             +P L 
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQ 457

Query: 531 VLSLKSNKFHG--NIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAIT 588
            L L+        + P     L  + ILDLS NNI+ I    L     +       L + 
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-----EILDLQ 512

Query: 589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLV 648
            N       +  L  +         G    +   L  + IL+   N       E   DL 
Sbjct: 513 HNN------LARLWKH------ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 649 GLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLC-QLSRLSVMNLSYNN 707
            L  ++L  NNL        +   SL  L+L +N                L+ +++ +N 
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

Query: 708 LSGKIPLGTQLQSFNASVYAGNPEL-----CGLP 736
                       ++    +   PEL     C  P
Sbjct: 621 FDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  231 bits (592), Expect = 4e-66
 Identities = 137/632 (21%), Positives = 224/632 (35%), Gaps = 102/632 (16%)

Query: 125 RLKYLDLSYINLNKSRDWLRIIDKLP-SLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGAL 183
             +  D S++ L       ++ D LP ++  LNL H  L  +  ++        S L +L
Sbjct: 5   SHEVADCSHLKLT------QVPDDLPTNITVLNLTHNQLRRLPAANFTRY----SQLTSL 54

Query: 184 YLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE----- 238
            +  N++ S + P L      L VL+L  N L     + F    +L  L+L  N      
Sbjct: 55  DVGFNTI-SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 239 ---------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESV-FSELSNL 288
                    L  L L  N L+ T      ++  L  L LS N +  + +E +     S+L
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 289 KALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQ---NQIEVLDISDAG 345
           K L L  N         +    +L  + L + Q+GP   + L  +     I  L +S++ 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 346 ISDTVPDWFWDLSHT-IADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLP 404
           +S T    F  L  T +   +LS N++   + N S  + P      +  N  + L     
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 405 SNAS---VLNLSRNKFSESISF--LCSING------HKLEFLDLSNNILSGRLPDCWMQF 453
                   LNL R+   +SIS   L  I+         LE L++ +N + G   + +   
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352

Query: 454 DRLAVLSLANNFFSGKIPKSMGFLH----SIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509
             L  LSL+N+F S +   +  F+      +  L+L  N +       F     L ++DL
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412

Query: 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPK 569
           G N +  E+      GL  +  + L  NK+          +  +Q L L    +   +  
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-VDS 471

Query: 570 CLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKIL 629
             + F  +      NL                                          IL
Sbjct: 472 SPSPFQPL-----RNL-----------------------------------------TIL 485

Query: 630 DFSMNKLSGTIPEEIMDLVGLVALNLSRNNLT--------GQITPKIDQLKSLDFLDLSQ 681
           D S N ++    + +  L  L  L+L  NNL         G     +  L  L  L+L  
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 682 NQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP 713
           N F          L  L +++L  NNL+    
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  225 bits (576), Expect = 6e-64
 Identities = 120/668 (17%), Positives = 212/668 (31%), Gaps = 110/668 (16%)

Query: 63  LKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGN 122
           +         KL  L+ L+L  N+ S     +       L  L L S   +    +    
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182
              L  LDLS+  L+ ++       +L +L+ L L +  +  +   +L       SSL  
Sbjct: 120 QKNLITLDLSHNGLSSTKL--GTQVQLENLQELLLSNNKIQALKSEELDIFA--NSSLKK 175

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPF---DRMVSLRTLYLGFN-- 237
           L L  N +          I   L  L L++  L  SL E         S+R L L  +  
Sbjct: 176 LELSSNQIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 238 --------------ELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFS 283
                          L  L L  N LN   N   + + +L+   L  N++  +       
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLH 293

Query: 284 ELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISD 343
            L N++ L+L  +      S   +P                      Q    +E L++ D
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKID---------------DFSFQWLKCLEHLNMED 338

Query: 344 AGISDTVPDWFWDLSHTIADFNLSNNHIKGK-LPNLSLRFDPFSS--SIDISSNYFEGLI 400
             I     + F  L + +   +LSN+    + L N +      S    ++++ N    + 
Sbjct: 339 NDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397

Query: 401 PPLPSNAS---VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLA 457
               S      VL+L  N+  + ++         +  + LS N       + +     L 
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 458 VLSLANNFFSG--KIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLS 515
            L L           P     L ++  L L NN++        +   +L ++DL  N L+
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 516 -------GEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIP 568
                     P +  +GL  L +L+L+SN F          L  ++I+DL LNN++ +  
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 569 KCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKI 628
              NN          +L                                         K 
Sbjct: 578 SVFNNQV--------SL-----------------------------------------KS 588

Query: 629 LDFSMNKLSGTIPEEIMD-LVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGG 687
           L+   N ++    +        L  L++  N         I     +++++ +       
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC-ESIAWF--VNWINETHTNIPEL 645

Query: 688 IPSSLCQL 695
               LC  
Sbjct: 646 SSHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  216 bits (552), Expect = 1e-60
 Identities = 97/538 (18%), Positives = 172/538 (31%), Gaps = 45/538 (8%)

Query: 62  PLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLG 121
            L      +     +L  L L  N                L  L LS             
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 122 NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLG 181
            L  L+ L LS   +   +     I    SL+ L L    +    P     +      L 
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI----GRLF 198

Query: 182 ALYLFENSLSSSIYPWLFNIS--SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNEL 239
            L+L    L  S+   L      + +  L L ++ L  +    F          L +  L
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG--------LKWTNL 250

Query: 240 EELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
             L L  N LN   N   + + +L+   L  N++  +        L N++ L+L  +   
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTK 309

Query: 300 LKFSHDWIPPF---------QLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTV 350
              S   +P            L  + +    +             ++ L +S++  S   
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 351 --PDWFWDLSHT-IADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLP--- 404
              + F  L+H+ +   NL+ N I   + + +  +      +D+  N     +       
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428

Query: 405 -SNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSG--RLPDCWMQFDRLAVLSL 461
             N   + LS NK+ +      ++    L+ L L    L      P  +     L +L L
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALV-PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 462 ANNFFSGKIPKSMGFLHSIQTLSLYNNSL--------IGELPSFFKSCSQLILMDLGKNG 513
           +NN  +      +  L  ++ L L +N+L         G    F K  S L +++L  NG
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547

Query: 514 LSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCL 571
                       L +L ++ L  N  +            ++ L+L  N I+ +  K  
Sbjct: 548 FDEIPVEVFK-DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  193 bits (493), Expect = 1e-52
 Identities = 101/552 (18%), Positives = 187/552 (33%), Gaps = 104/552 (18%)

Query: 177 TSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGF 236
           T S          L+        ++ + + VL+L  N L+      F R   L +L +GF
Sbjct: 3   TVSHEVADCSHLKLTQVP----DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 237 NELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
           N + +L            +   ++  L  L+L  N L+ +  ++ F+  +NL  LHL  N
Sbjct: 59  NTISKL----------EPELCQKLPMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSN 107

Query: 297 SFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWD 356
           S         I                         Q  +  LD+S  G+S T       
Sbjct: 108 SIQ------KIKNN------------------PFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 357 LSHTIADFNLSNNHIKGKLPNLSLRFDPFSS--SIDISSNYFEGLIPPLPSNAS---VLN 411
           L + + +  LSNN I+  L +  L     SS   +++SSN  +   P           L 
Sbjct: 144 LEN-LQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201

Query: 412 LSRNKFSESI--SFLCSINGHKLEFLDLSNNILSGRLPD--CWMQFDRLAVLSLANNFFS 467
           L+  +   S+       +    +  L LSN+ LS         +++  L +L L+ N  +
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 468 GKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSG--------EIP 519
                S  +L  ++   L  N++             +  ++L ++            +I 
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 520 TWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQ 579
            +  + L  L  L+++ N   G        L  ++ L LS +  S +       F  +A 
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS-LRTLTNETFVSLAH 380

Query: 580 KSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGT 639
                                                         + IL+ + NK+S  
Sbjct: 381 SP--------------------------------------------LHILNLTKNKISKI 396

Query: 640 IPEEIMDLVGLVALNLSRNNLTGQITPK-IDQLKSLDFLDLSQNQFVGGIPSSLCQLSRL 698
             +    L  L  L+L  N +  ++T +    L+++  + LS N+++    +S   +  L
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 699 SVMNLSYNNLSG 710
             + L    L  
Sbjct: 457 QRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  152 bits (385), Expect = 1e-38
 Identities = 90/511 (17%), Positives = 155/511 (30%), Gaps = 110/511 (21%)

Query: 227 VSLRTLYLGFNEL-----------EELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTG 275
           VS         +L             L L  N+L        +R  +L +L +  N+++ 
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 276 VVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQ 335
           +    +  +L  LK L+L  N  +           QL       C               
Sbjct: 64  L-EPELCQKLPMLKVLNLQHNELS-----------QLSDKTFAFCT-------------N 98

Query: 336 IEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNY 395
           +  L +    I     + F    + +   +LS+N +                        
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKN-LITLDLSHNGLSS-----------------TKLGT 140

Query: 396 FEGLIPPLPSNASVLNLSRNKFSESISFLCSINGH-KLEFLDLSNNILSGRLPDCWMQFD 454
              L      N   L LS NK     S    I  +  L+ L+LS+N +    P C+    
Sbjct: 141 QVQL-----ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 455 RLAVLSLANNFFSGKIPKSMGF---LHSIQTLSLYNNSLIGELPSFFKSC--SQLILMDL 509
           RL  L L N      + + +       SI+ LSL N+ L     + F     + L ++DL
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPK 569
             N L+          LP+L    L+ N         +  L  ++ L+L  +     I  
Sbjct: 256 SYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS- 313

Query: 570 CLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKIL 629
            L +   +   S   L                                     L   + L
Sbjct: 314 -LASLPKIDDFSFQWL-----------------------------------KCL---EHL 334

Query: 630 DFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID----QLKSLDFLDLSQNQFV 685
           +   N + G        L+ L  L+LS +  + +              L  L+L++N+  
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 686 GGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT 716
                +   L  L V++L  N +  ++    
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  143 bits (363), Expect = 8e-36
 Identities = 81/407 (19%), Positives = 140/407 (34%), Gaps = 47/407 (11%)

Query: 335 QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSN 394
             EV D S   ++  VPD   DL   I   NL++N ++  LP  +       +S+D+  N
Sbjct: 5   SHEVADCSHLKLT-QVPD---DLPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN 59

Query: 395 YFEGLIPPLPSNAS---VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWM 451
               L P L        VLNL  N+ S+      +     L  L L +N +     + ++
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFV 118

Query: 452 QFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSC--SQLILMDL 509
           +   L  L L++N  S     +   L ++Q L L NN +             S L  ++L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIP---FQVCQLSYIQILDLSLNNISGI 566
             N +    P      + +L  L L + +   ++          + I+ L LS + +S  
Sbjct: 179 SSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 567 IPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLV 626
                  F G+   + + L ++ N         F                    + L  +
Sbjct: 238 SN---TTFLGLKWTNLTMLDLSYNNLNVVGNDSF--------------------AWLPQL 274

Query: 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRN---------NLTGQITPKIDQLKSLDFL 677
           +      N +       +  L  +  LNL R+         +L          LK L+ L
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 678 DLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNAS 724
           ++  N   G   +    L  L  ++LS +  S +        S   S
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.1 bits (206), Expect = 1e-16
 Identities = 38/214 (17%), Positives = 64/214 (29%), Gaps = 54/214 (25%)

Query: 500 SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLS 559
           + S  +  D     L+ ++P  +      + VL+L  N+          + S +  LD+ 
Sbjct: 3   TVSHEVA-DCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 560 LNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEY 619
            N IS + P+               L                                  
Sbjct: 58  FNTISKLEPELCQKLP--------ML---------------------------------- 75

Query: 620 RSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDL 679
                  K+L+   N+LS    +       L  L+L  N++         + K+L  LDL
Sbjct: 76  -------KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 680 SQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP 713
           S N        +  QL  L  + LS N +     
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 5e-09
 Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 2/105 (1%)

Query: 58  VHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIP 117
           +      G     L  L HL  L+L  N F      E    L +L+ + L          
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 118 SQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHL 162
           S   N   LK L+L   NL  S +         +L  L++     
Sbjct: 578 SVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNPF 621

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  238 bits (610), Expect = 3e-69
 Identities = 128/659 (19%), Positives = 217/659 (32%), Gaps = 97/659 (14%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN 135
             ++LDLS N            S  +L+ L LS  E +        +LS L  L L+   
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 136 LNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIY 195
           +            L SL+ L     +L  +    + HL     +L  L +  N + S   
Sbjct: 88  IQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHL----KTLKELNVAHNLIQSFKL 141

Query: 196 PWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQ 255
           P  F+  + L  LDL SN +Q         +  +  L L       L L  N +N     
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL------SLDLSLNPMNFIQPG 195

Query: 256 WLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIII 315
               + +L  L+L  N  +  V ++    L+ L+   L    F  + + +      L   
Sbjct: 196 AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL--- 251

Query: 316 LLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKL 375
                            + ++  LD     I     D F  L++ ++ F+L +  I+  +
Sbjct: 252 --------EGLCNLTIEEFRLAYLDYYLDDI----IDLFNCLTN-VSSFSLVSVTIER-V 297

Query: 376 PNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFL 435
            + S  ++     +++ +  F         +   L  + NK   + S    ++   LEFL
Sbjct: 298 KDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFL 352

Query: 436 DLSNNILS--GRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGE 493
           DLS N LS  G           L  L L+ N     +  +   L  ++ L   +++L   
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 494 LP-SFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNI-PFQVCQLS 551
              S F S   LI +D+               GL  L VL +  N F  N  P    +L 
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 552 YIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLT 611
            +  LDLS   +  + P   N+ + +                                  
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSL---------------------------------- 496

Query: 612 WKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQL 671
                          ++L+ S N            L  L  L+ S N++      ++   
Sbjct: 497 ---------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 672 -KSLDFLDLSQNQFVGGIPSS--LCQLSRLSVMNLSYNNLSGKIPL---GTQLQSFNAS 724
             SL FL+L+QN F         L  +     + +    +    P    G  + S N +
Sbjct: 542 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  204 bits (520), Expect = 8e-57
 Identities = 106/585 (18%), Positives = 171/585 (29%), Gaps = 71/585 (12%)

Query: 150 PSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLD 209
            S + L+L    L  +              L  L L    + +      +   S L  L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSF----PELQVLDLSRCEIQTIE-DGAYQSLSHLSTLI 82

Query: 210 LDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLS 269
           L  N +Q   L  F  + SL+ L                L    N  +  +  L  L+++
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVE----------TNLASLENFPIGHLKTLKELNVA 132

Query: 270 GNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIIL----LGSCQMGPH 325
            N +        FS L+NL+ L L  N     +  D     Q+ ++     L    M   
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 326 FPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPF 385
            P   +    +  L + +   S  V          +    L     + +           
Sbjct: 193 QPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 386 S------------SSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLE 433
                        + +D   +    L   L  N S  +L          F         +
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIERVKDF---SYNFGWQ 307

Query: 434 FLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSL--I 491
            L+L N       P   +     ++  L      G    S   L S++ L L  N L   
Sbjct: 308 HLELVNCKFGQ-FPTLKL----KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 492 GELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQV-CQL 550
           G         + L  +DL  NG+      ++  GL +L  L  + +       F V   L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 551 SYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVL 610
             +  LD+S  +         N  + +       L +  N           +      + 
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSL-----EVLKMAGNS---------FQENFLPDIF 466

Query: 611 TWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQ 670
                     + L  +  LD S  +L    P     L  L  LN+S NN     T     
Sbjct: 467 ----------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 671 LKSLDFLDLSQNQFVGGIPSSLCQL-SRLSVMNLSYNNLSGKIPL 714
           L SL  LD S N  +      L    S L+ +NL+ N+ +     
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  202 bits (515), Expect = 4e-56
 Identities = 99/522 (18%), Positives = 170/522 (32%), Gaps = 54/522 (10%)

Query: 63  LKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGN 122
           ++     +   L HL  L L+ N             L+ L+ L              +G+
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182
           L  LK L++++ NL +S         L +L  L+L    +  I  +DL  L+       +
Sbjct: 123 LKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLE-PFDRMVSLRTLYLGFNELEE 241
           L L  N ++    P  F    +L  L L +N    ++++     +  L    L   E   
Sbjct: 182 LDLSLNPMNFIQ-PGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE--- 236

Query: 242 LFLGKNRLNGTINQWLSRMYKLD--ALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
            F  +  L       L  +  L      L+           +F+ L+N+ +  L   +  
Sbjct: 237 -FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 300 LKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSH 359
                  +  F                          + L++ +             L  
Sbjct: 296 R------VKDFSY--------------------NFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 360 TIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSN--YFEGLIPPLPSNAS---VLNLSR 414
                  ++N        + L   P    +D+S N   F+G         +    L+LS 
Sbjct: 330 ----LTFTSNKGGNAFSEVDL---PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 415 NKFSESISFLCSINGHKLEFLDLSNNILSGRLP-DCWMQFDRLAVLSLANNFFSGKIPKS 473
           N      S        +LE LD  ++ L        ++    L  L +++          
Sbjct: 383 NGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 474 MGFLHSIQTLSLYNNSLIGEL-PSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVL 532
              L S++ L +  NS      P  F     L  +DL +  L    PT     L  L VL
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVL 499

Query: 533 SLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNF 574
           ++  N F     F    L+ +Q+LD SLN+I     + L +F
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  196 bits (500), Expect = 5e-54
 Identities = 89/524 (16%), Positives = 175/524 (33%), Gaps = 41/524 (7%)

Query: 62  PLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEG-PIPSQL 120
           P++     +   L  L+ L   E + +       IG L  L+ L+++    +   +P   
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 121 GNLSRLKYLDLSYINLNK-SRDWLRIIDKLPSLR-TLNLEHCHLPPIIPSDLLHLNFSTS 178
            NL+ L++LDLS   +       LR++ ++P L  +L+L    +  I P     +     
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK- 204

Query: 179 SLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGS---LLEPFDRMVSLRTLYLG 235
               L L  N  S ++        + L V  L     +            +  L  L + 
Sbjct: 205 ----LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 236 FNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDD 295
              L  L    + +    N     +  + + SL   ++  V     FS     + L L +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNC----LTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVN 313

Query: 296 NSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGIS--DTVPDW 353
             F  +F    +   + +                      +E LD+S  G+S        
Sbjct: 314 CKFG-QFPTLKLKSLKRLTFT----SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 354 FWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS--SIDISSNYFEGLIPPLP----SNA 407
            +  +  +   +LS N +      +S  F        +D   +  + +          N 
Sbjct: 369 DFGTTS-LKYLDLSFNGVIT----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 408 SVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRL-PDCWMQFDRLAVLSLANNFF 466
             L++S      + + + +     LE L ++ N       PD + +   L  L L+    
Sbjct: 424 IYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 467 SGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGL 526
               P +   L S+Q L++ +N+        +K  + L ++D   N +       +    
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542

Query: 527 PKLVVLSLKSNKFHGNIPFQ--VCQLSYIQILDLSLNNISGIIP 568
             L  L+L  N F      Q  +  +   + L + +  +    P
Sbjct: 543 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (303), Expect = 2e-28
 Identities = 63/343 (18%), Positives = 108/343 (31%), Gaps = 19/343 (5%)

Query: 386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSING-HKLEFLDLSNNILSG 444
           + +       F  +   LP +   L+LS N      S+  S     +L+ LDLS   +  
Sbjct: 9   NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQT 66

Query: 445 RLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQL 504
                +     L+ L L  N        +   L S+Q L     +L             L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 505 ILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQI----LDLSL 560
             +++  N +           L  L  L L SNK        +  L  + +    LDLSL
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 561 NNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYR 620
           N ++ I P              +N    +      QG+  LE     V+  ++   +  +
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE-VHRLVLGEFRNEGNLEK 245

Query: 621 ---STLGLVKILDFSMNKLS------GTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQL 671
              S L  +  L     +L+        I +    L  + + +L    +           
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYN 303

Query: 672 KSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714
                L+L   +F       L  L RL+  +    N   ++ L
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  228 bits (583), Expect = 3e-65
 Identities = 100/654 (15%), Positives = 190/654 (29%), Gaps = 120/654 (18%)

Query: 83  SENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSY--INLNKSR 140
            E D  G++    + S  ++  LSL      G +P  +G L+ L+ L L      +N+  
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

Query: 141 DWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFN 200
              + I    S         H            +FS   L    +  +    SI      
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS--DLIKDCINSDPQQKSI-KKSSR 180

Query: 201 ISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNEL---------EELFLGKNRLNG 251
           I+ K   +   SN +   + +   R+  LR  Y+G +           E       +   
Sbjct: 181 ITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239

Query: 252 TINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQ 311
           T +     +  L  + +        +       L  ++ +++  N              +
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGIS------GEQLK 292

Query: 312 LIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISD-TVPDWFWDLSHTIADFNLSNNH 370
                L                 +I+++ I    +    V      +   +       N 
Sbjct: 293 DDWQALAD----------APVGEKIQIIYIGYNNLKTFPVETSLQKMKK-LGMLECLYNQ 341

Query: 371 IKGKLPNL----SLRFDPFSSSIDISSNYFEGLIPPLPSNAS---VLNLSRNKFSESISF 423
           ++GKLP       L       S++++ N    +             L+ + NK     + 
Sbjct: 342 LEGKLPAFGSEIKLA------SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395

Query: 424 LCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTL 483
             + +   +  +D S N +                  +    F   +  +     ++ ++
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGS----------------VDGKNFDP-LDPTPFKGINVSSI 438

Query: 484 SLYNNSLIGELPSFFKSCSQLILMDLGKNGLSG-------EIPTWIGEGLPKLVVLSLKS 536
           +L NN +       F + S L  ++L  N L+        +           L  + L+ 
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK-NTYLLTSIDLRF 497

Query: 537 NKFHGNIP-FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFER 595
           NK       F+   L Y+  +DLS N+ S   P    N        SS L          
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLN--------SSTL---------- 538

Query: 596 QGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNL 655
                                       G+    D   N+     PE I     L  L +
Sbjct: 539 -------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 656 SRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709
             N++   +  KI    ++  LD+  N  +    S +C      +  L Y+   
Sbjct: 574 GSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  180 bits (459), Expect = 3e-48
 Identities = 81/745 (10%), Positives = 184/745 (24%), Gaps = 188/745 (25%)

Query: 2   EEEREALLEFKQSLVDEYGILSSWGREDD-------------------KRDCCYWR---G 39
           +      L      + +Y  L       +                    ++   W    G
Sbjct: 15  DAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPG 74

Query: 40  VRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLD------------------ 81
           V  ++  G V  L L+         G +  ++ +L  L  L                   
Sbjct: 75  VSLNSN-GRVTGLSLE----GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129

Query: 82  ----------LSENDFSGSRIPEFIG-SLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLD 130
                          +  + +        + L    ++S   +  I        +   + 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 131 LSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSL 190
               N+      +    +L  LR   + +         +                     
Sbjct: 190 QLSNNITFVSKAVM---RLTKLRQFYMGNSPFVAENICEAWEN---------ENSEYAQQ 237

Query: 191 SSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLN 250
             +      N+   L  +++ +      L      +  ++ + +  N        + + +
Sbjct: 238 YKTEDLKWDNLKD-LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG--EQLKDD 294

Query: 251 GTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPF 310
                      K+  + +  N+L     E+   ++  L  L    N              
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG---------- 344

Query: 311 QLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNH 370
              +   GS               ++  L+++   I+  +P  F   +  + + + ++N 
Sbjct: 345 --KLPAFGSEI-------------KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388

Query: 371 IKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGH 430
           +K        +     S+ID S N    +                 F           G 
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG-------------KNFDPLDPTPF--KGI 433

Query: 431 KLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSG-------KIPKSMGFLHSIQTL 483
            +  ++LSNN +S    + +     L+ ++L  N  +           ++    + + ++
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493

Query: 484 SLYNNSLIGELPSF-FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSL------KS 536
            L  N L      F   +   L+ +DL  N  S   PT        L    +      + 
Sbjct: 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN-SSTLKGFGIRNQRDAQG 551

Query: 537 NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQ 596
           N+     P  +     +  L +  N+I  +  K   N +                     
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNIS--------------------- 590

Query: 597 GIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLS 656
                                          +LD   N         +   +      L 
Sbjct: 591 -------------------------------VLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

Query: 657 RNNLTGQITPKIDQLKSLDFLDLSQ 681
            +            ++  D LD+ +
Sbjct: 620 YDKTQ--------DIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  152 bits (385), Expect = 1e-38
 Identities = 65/481 (13%), Positives = 145/481 (30%), Gaps = 80/481 (16%)

Query: 256 WLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIII 315
            L+   ++  LSL G   +G V ++   +L+ L+ L L  +   +               
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNER------------ 122

Query: 316 LLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHT-IADFNLSNNHIKGK 374
                      PK +      E           T  D+      + +    ++++  +  
Sbjct: 123 --------LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

Query: 375 LPNLSLRFDPFSSSIDISSNYFEGLIPPLP--SNASVLNLSRNKFSESISFLCSINGHKL 432
           +     R     + I   SN    +   +   +      +  + F               
Sbjct: 175 IKKS-SRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICE------AW 227

Query: 433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLI- 491
           E  +             W     L  + + N     K+P  +  L  +Q +++  N  I 
Sbjct: 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 492 -------GELPSFFKSCSQLILMDLGKNGL-SGEIPTWIGEGLPKLVVLSLKSNKFHGNI 543
                   +  +      ++ ++ +G N L +  + T +   + KL +L    N+  G +
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKL 346

Query: 544 PFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLES 603
           P        +  L+L+ N I+ I          +      NL+   N          L+ 
Sbjct: 347 P-AFGSEIKLASLNLAYNQITEIPANFCGFTEQV-----ENLSFAHNK---------LKY 391

Query: 604 YVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSG-------TIPEEIMDLVGLVALNLS 656
             +               ++ ++  +DFS N++          +       + + ++NLS
Sbjct: 392 IPNIFDA----------KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441

Query: 657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVG-------GIPSSLCQLSRLSVMNLSYNNLS 709
            N ++            L  ++L  N               +      L+ ++L +N L+
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501

Query: 710 G 710
            
Sbjct: 502 K 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  130 bits (330), Expect = 8e-32
 Identities = 47/342 (13%), Positives = 99/342 (28%), Gaps = 35/342 (10%)

Query: 388 SIDISSNYFEGLIPPLPSNAS---VLNLSRNKFS--ESISFLCSI-NGHKLEFLDLSNNI 441
            + +      G +P      +   VL L  +     E +     I      E        
Sbjct: 85  GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144

Query: 442 LSGRLPD--CWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFK 499
                 D      F  L    + ++     I KS         +   +N++   +     
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVM 203

Query: 500 SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLS 559
             ++L    +G +    E      E        + +  + +     +   L  +  +++ 
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWE------NENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 560 LNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEY 619
                  +P  L     M       + +  N     +GI   +   D   L       + 
Sbjct: 258 NCPNLTKLPTFLKALPEM-----QLINVACN-----RGISGEQLKDDWQALADAPVGEK- 306

Query: 620 RSTLGLVKILDFSMNKL-SGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLD 678
                 ++I+    N L +  +   +  +  L  L    N L G++ P       L  L+
Sbjct: 307 ------IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLN 359

Query: 679 LSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQS 720
           L+ NQ      +      ++  ++ ++N L   IP     +S
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKS 400

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (270), Expect = 2e-24
 Identities = 32/288 (11%), Positives = 84/288 (29%), Gaps = 49/288 (17%)

Query: 455 RLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIG----ELPSFFKSCSQLILMDLG 510
           R+  LSL     SG++P ++G L  ++ L+L ++          P    +          
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 511 KNGLSGEIPTWIG-EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPK 569
           +         +   E    L+   + S+    +I            +    NNI+ +  K
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SK 200

Query: 570 CLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKIL 629
            +   T +         + ++                              +     +  
Sbjct: 201 AVMRLTKL-----RQFYMGNS-------------------------PFVAENICEAWENE 230

Query: 630 DFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGG-- 687
           +    +   T   +  +L  L  + +       ++   +  L  +  ++++ N+ + G  
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 688 ------IPSSLCQLSRLSVMNLSYNNL-SGKIPLG----TQLQSFNAS 724
                   +      ++ ++ + YNNL +  +        +L      
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 5e-11
 Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 6/122 (4%)

Query: 621 STLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDF 676
           ++ G V  L       SG +P+ I  L  L  L L  +             I    S + 
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 677 LDLSQNQFVGGIPSSL--CQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCG 734
               +  +             S L    ++ +     I   +++   +  +   +  +  
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 735 LP 736
           + 
Sbjct: 198 VS 199

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 12/61 (19%), Positives = 22/61 (36%)

Query: 654 NLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP 713
           N   +    Q    ++    +  L L      G +P ++ QL+ L V+ L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 714 L 714
           L
Sbjct: 123 L 123

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  217 bits (556), Expect = 9e-65
 Identities = 85/343 (24%), Positives = 129/343 (37%), Gaps = 61/343 (17%)

Query: 401 PPLPSNASVLNLSRNKFSESISFLCSINGH--KLEFLDLSNNILSGR--LPDCWMQFDRL 456
             L S     +     +   +   C  +    ++  LDLS   L     +P        L
Sbjct: 22  TTLSSWLPTTDCCNRTWLGVL---CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78

Query: 457 AVLSLAN-NFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLS 515
             L +   N   G IP ++  L  +  L + + ++ G +P F      L+ +D   N LS
Sbjct: 79  NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 516 GEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSY-IQILDLSLNNISGIIPKCLNNF 574
           G +P  I   LP LV ++   N+  G IP      S     + +S N ++G IP    N 
Sbjct: 139 GTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 575 TGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMN 634
                                                              +  +D S N
Sbjct: 198 N--------------------------------------------------LAFVDLSRN 207

Query: 635 KLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQ 694
            L G              ++L++N+L   +  K+   K+L+ LDL  N+  G +P  L Q
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 695 LSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPL 737
           L  L  +N+S+NNL G+IP G  LQ F+ S YA N  LCG PL
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  159 bits (405), Expect = 1e-43
 Identities = 74/327 (22%), Positives = 119/327 (36%), Gaps = 60/327 (18%)

Query: 2   EEEREALLEFKQSLVDEYGILSSWGREDDKRDCCY--WRGVRCSNTT--GHVIVLDLQ-- 55
            ++++ALL+ K+ L +    LSSW       DCC   W GV C   T    V  LDL   
Sbjct: 5   PQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 56  ---------------------VLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPE 94
                                 +     L G I P++ KL  L +L ++  + SG+ IP+
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPD 119

Query: 95  FIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRI---IDKLPS 151
           F+  +  L  L  S     G +P  + +L  L  +      ++ +     I         
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-----IPDSYGSFSK 174

Query: 152 LRT-LNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDL 210
           L T + +    L   IP    +LN     L  + L  N L         +  +    + L
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLN-----LAFVDLSRNMLEGDASVLFGSDKN-TQKIHL 228

Query: 211 DSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSG 270
             N L   L         +         L  L L  NR+ GT+ Q L+++  L +L++S 
Sbjct: 229 AKNSLAFDL--G-----KVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 271 NSLTGVVTESVFSELSNLKALHLDDNS 297
           N+L G + +     L         +N 
Sbjct: 278 NNLCGEIPQG--GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  139 bits (352), Expect = 1e-36
 Identities = 61/257 (23%), Positives = 112/257 (43%), Gaps = 27/257 (10%)

Query: 334 NQIEVLDISDAGIS--DTVPDWFWDLSHTIADFNLSN-NHIKGKLP----NLS-LRFDPF 385
            ++  LD+S   +     +P    +L +      +   N++ G +P     L+ L +   
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNF-LYIGGINNLVGPIPPAIAKLTQLHY--- 105

Query: 386 SSSIDISSNYFEGLIPPLPSNAS---VLNLSRNKFSESI-SFLCSINGHKLEFLDLSNNI 441
              + I+     G IP   S       L+ S N  S ++   + S+    L  +    N 
Sbjct: 106 ---LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL--PNLVGITFDGNR 160

Query: 442 LSGRLPDCWMQFDRLA-VLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKS 500
           +SG +PD +  F +L   ++++ N  +GKIP +   L ++  + L  N L G+    F S
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGS 219

Query: 501 CSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSL 560
                 + L KN L+ ++          L  L L++N+ +G +P  + QL ++  L++S 
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 561 NNISGIIPK--CLNNFT 575
           NN+ G IP+   L  F 
Sbjct: 278 NNLCGEIPQGGNLQRFD 294

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (324), Expect = 8e-33
 Identities = 70/308 (22%), Positives = 114/308 (37%), Gaps = 37/308 (12%)

Query: 247 NRLNGTINQWLSRMYKLDALSLSGNSLTGVVT-ESVFSELSNLKALHL-DDNSFTLKFSH 304
               G +    ++ Y+++ L LSG +L       S  + L  L  L++   N+       
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----- 90

Query: 305 DWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADF 364
             IPP       +                 Q+  L I+   +S  +PD+   +   +   
Sbjct: 91  GPIPPA------IAKLT-------------QLHYLYITHTNVSGAIPDFLSQIKT-LVTL 130

Query: 365 NLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPP----LPSNASVLNLSRNKFSES 420
           + S N + G LP  S+   P    I    N   G IP          + + +SRN+ +  
Sbjct: 131 DFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 421 ISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSI 480
           I    +     L F+DLS N+L G     +        + LA N  +  +   +G   ++
Sbjct: 190 IPP--TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNL 246

Query: 481 QTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH 540
             L L NN + G LP        L  +++  N L GEIP   G  L +  V +  +NK  
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCL 304

Query: 541 GNIPFQVC 548
              P   C
Sbjct: 305 CGSPLPAC 312

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  204 bits (521), Expect = 6e-57
 Identities = 124/610 (20%), Positives = 195/610 (31%), Gaps = 89/610 (14%)

Query: 127 KYLDLSYINLNKSRDWLRIIDKLP-SLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYL 185
           K  +   + LN       I   LP S   L      LP I  +    L     +L  L L
Sbjct: 15  KTYNCENLGLN------EIPGTLPNSTECLEFSFNVLPTIQNTTFSRL----INLTFLDL 64

Query: 186 FENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN-------- 237
               +   I+   F    +L  L L +N L            +L+ L+            
Sbjct: 65  TRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 238 ------ELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKAL 291
                  LE L+LG N ++           KL  L    N++  + ++   S L     L
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNL 182

Query: 292 HLDDNSFTLK-FSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQN--QIEVLDISDAGISD 348
            L+ N   +               +  G  Q      K L+      + +    D    D
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 349 TVPDWFWDLSH-TIADFNLSNNHIKGKLPNLSLRFDPFSS--SIDISSNYFEGLIPPLP- 404
             P  F  L   ++   NL  ++      N    F  FS    +D+++ +   L   L  
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNT---FHCFSGLQELDLTATHLSELPSGLVG 299

Query: 405 -SNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQ-FDRLAVLSLA 462
            S    L LS NKF        S N   L  L +  N     L    ++  + L  L L+
Sbjct: 300 LSTLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 463 NNFFSGKIPKSMGF--LHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPT 520
           ++        ++    L  +Q+L+L  N  +      FK C QL L+DL    L  +   
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 521 WIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQK 580
              + L  L VL+L  +    +       L  +Q L+L  N+      +  N+   +   
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL--- 475

Query: 581 SSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTI 640
               L                                         +IL  S   LS   
Sbjct: 476 --GRL-----------------------------------------EILVLSFCDLSSID 492

Query: 641 PEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSV 700
                 L  +  ++LS N LT      +  LK + +L+L+ N     +PS L  LS+   
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551

Query: 701 MNLSYNNLSG 710
           +NL  N L  
Sbjct: 552 INLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  175 bits (446), Expect = 7e-47
 Identities = 91/523 (17%), Positives = 162/523 (30%), Gaps = 42/523 (8%)

Query: 78  RHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLN 137
           +  +      +   IP  +   N    L  S         +    L  L +LDL+   + 
Sbjct: 15  KTYNCENLGLN--EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 138 KSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPW 197
              +          L TL L    L  +  + L        +L  L+  +  +SS I   
Sbjct: 71  WIHE--DTFQSQHRLDTLVLTANPLIFMAETALSGP----KALKHLFFIQTGISS-IDFI 123

Query: 198 LFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELE----------------E 241
             +    L  L L SN +    L        L+ L    N +                  
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 242 LFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTES-VFSELSNLKALHLDDNSFT- 299
           L L  N +   I           +L+  G     V+ +    S + +L     +D     
Sbjct: 184 LNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 300 -LKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLS 358
                 + +    +  I L                + ++ LD++   +S  +P     LS
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS 301

Query: 359 HTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLP----SNASVLNLSR 414
             +    LS N  +  L  +S    P  + + I  N     +         N   L+LS 
Sbjct: 302 T-LKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 415 NKFSESISFLCSING-HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKS 473
           +    S      +     L+ L+LS N       + + +  +L +L LA      K  +S
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 474 -MGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIG--EGLPKLV 530
               LH ++ L+L ++ L       F     L  ++L  N             + L +L 
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 531 VLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNN 573
           +L L               L  +  +DLS N ++    + L++
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  170 bits (434), Expect = 4e-45
 Identities = 87/529 (16%), Positives = 166/529 (31%), Gaps = 62/529 (11%)

Query: 63  LKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGN 122
           +      +    + L  L L+ N          +     L++L              L N
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182
              L+ L L   +++  +  L        L+ L+ ++  +  +   D+  L    ++  +
Sbjct: 128 QKTLESLYLGSNHISSIK--LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL--QQATNLS 183

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLE--PFDRMVSLRTLYLGFNE-- 238
           L L  N ++  I P  F+ S+    L+         + +      + SL        +  
Sbjct: 184 LNLNGNDIAG-IEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 239 --------------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSE 284
                         +E + L K+      +        L  L L+   L+ +   S    
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL--PSGLVG 299

Query: 285 LSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDA 344
           LS LK L L  N F        +                            +  L I   
Sbjct: 300 LSTLKKLVLSANKFEN------LCQISA------------------SNFPSLTHLSIKGN 335

Query: 345 GISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS--SIDISSNYFEGLIPP 402
                +     +    + + +LS++ I+      +L+    S   S+++S N    L   
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 403 LPSNAS---VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVL 459
                    +L+L+  +     +     N H L+ L+LS+++L       +     L  L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454

Query: 460 SLANNFFSGKIPKSMGF---LHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSG 516
           +L  N F     +       L  ++ L L    L       F S   +  +DL  N L+ 
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

Query: 517 EIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISG 565
                    L  +  L+L SN     +P  +  LS  + ++L  N +  
Sbjct: 515 -SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  162 bits (413), Expect = 2e-42
 Identities = 92/525 (17%), Positives = 162/525 (30%), Gaps = 54/525 (10%)

Query: 62  PLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLG 121
           PL      +L     L+HL   +   S       + +   L  L L S         +  
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSI-DFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 122 NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR--TLNLEHCHLPPIIPSDLLHLNFSTSS 179
              +LK LD     ++        +  L      +LNL    +  I P       F ++ 
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKED--MSSLQQATNLSLNLNGNDIAGIEPG-----AFDSAV 203

Query: 180 LGALYLFENSLSSSIYPWLFNIS-SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE 238
             +L          I+  L N +   L +   +    +      F+ +  +         
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS-------- 255

Query: 239 LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSF 298
           +E + L K+      +        L  L L+   L+ +   S    LS LK L L  N F
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL--PSGLVGLSTLKKLVLSANKF 313

Query: 299 TLKFSHDWIPPFQL-------IIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGI--SDT 349
                   +             + + G+ +        L+    +  LD+S   I  SD 
Sbjct: 314 EN------LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 350 VPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPP----LPS 405
                 +LSH +   NLS N     L   + +  P    +D++    +            
Sbjct: 368 CNLQLRNLSH-LQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 406 NASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQF---DRLAVLSLA 462
              VLNLS +    S   L       L+ L+L  N                 RL +L L+
Sbjct: 426 LLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 463 NNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWI 522
               S     +   L  +  + L +N L             + L +L  N +S  +P+ +
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLL 543

Query: 523 GEGLPKLVVLSLKSNKFHGNIPFQVCQLSY-IQILDLSLNNISGI 566
              L +   ++L+ N          C   Y ++    ++  +   
Sbjct: 544 P-ILSQQRTINLRQNPLDCT-----CSNIYFLEWYKENMQKLEDT 582

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  153 bits (388), Expect = 3e-39
 Identities = 94/573 (16%), Positives = 160/573 (27%), Gaps = 131/573 (22%)

Query: 153 RTLNLEHCHL---PPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLD 209
           +T N E+  L   P  +P+    L FS           N L + I    F+    L  LD
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECLEFS----------FNVLPT-IQNTTFSRLINLTFLD 63

Query: 210 LDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLS 269
           L    +     + F     L TL L  N L  +              LS    L  L   
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM----------AETALSGPKALKHLFFI 113

Query: 270 GNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKW 329
              ++ +           L++L+L  N  +               I L            
Sbjct: 114 QTGISSI-DFIPLHNQKTLESLYLGSNHISS--------------IKLPKGFPTEK---- 154

Query: 330 LQTQNQIEVLDISDAGISDTVPDWFWDLSH-TIADFNLSNNHIKGKLPNLSLRFDPFSSS 388
                 ++VLD  +  I     +    L   T    NL+ N I G +   +        S
Sbjct: 155 ------LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDS-AVFQS 206

Query: 389 IDISSNYFEGLIPPLPSNASVLNLSRNKFSE------SISFLCSINGHKLEFLDLSNNIL 442
           ++        +I     N+++ +L    F +      S +    +    +E ++L  +  
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 443 SGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCS 502
                + +  F  L  L L     S ++P  +  L +++ L L  N           +  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 503 QLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNN 562
            L  + +  N    E+ T   E L  L                        + LDLS ++
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENL------------------------RELDLSHDD 361

Query: 563 ISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRST 622
           I      C      ++                                            
Sbjct: 362 IETS-DCCNLQLRNLSH------------------------------------------- 377

Query: 623 LGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQ 681
              ++ L+ S N+      E   +   L  L+L+   L  +        L  L  L+LS 
Sbjct: 378 ---LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 682 NQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714
           +            L  L  +NL  N+       
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  136 bits (345), Expect = 8e-34
 Identities = 59/345 (17%), Positives = 119/345 (34%), Gaps = 21/345 (6%)

Query: 383 DPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSE----SISFLCSINGHKLEFLDLS 438
              + + +  +     +   LP++   L  S N        + S L       L FLDL+
Sbjct: 11  KEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRL-----INLTFLDLT 65

Query: 439 NNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFF 498
              +     D +    RL  L L  N        ++    +++ L      +        
Sbjct: 66  RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL 125

Query: 499 KSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIP--FQVCQLSYIQIL 556
            +   L  + LG N +S  I    G    KL VL  ++N  H          Q +    L
Sbjct: 126 HNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 557 DLSLNNISGIIPKCLNNFTGMAQK-SSSNLAITSNYTFERQGIEFLE----SYVDNVVLT 611
           +L+ N+I+GI P   ++    +     +   +      +   I+ L       +D+  ++
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 612 WKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQL 671
               +     ++   + ++   +              GL  L+L+  +L+ ++   +  L
Sbjct: 245 PAVFEGLCEMSV---ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300

Query: 672 KSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT 716
            +L  L LS N+F      S      L+ +++  N    ++  G 
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 1e-11
 Identities = 40/254 (15%), Positives = 70/254 (27%), Gaps = 61/254 (24%)

Query: 481 QTLSLYNNSLI---GELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537
           +T +  N  L    G LP+          ++   N L   I       L  L  L L   
Sbjct: 15  KTYNCENLGLNEIPGTLPNS------TECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRC 67

Query: 538 KFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQG 597
           + +            +  L L+ N +  +    L+            L            
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK--------AL------------ 107

Query: 598 IEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSR 657
                                        K L F    +S      + +   L +L L  
Sbjct: 108 -----------------------------KHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138

Query: 658 NNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVM--NLSYNNLSGKIPLG 715
           N+++    PK    + L  LD   N         +  L + + +  NL+ N+++G  P  
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 716 TQLQSFNASVYAGN 729
                F +  + G 
Sbjct: 199 FDSAVFQSLNFGGT 212

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  195 bits (498), Expect = 9e-54
 Identities = 119/634 (18%), Positives = 200/634 (31%), Gaps = 108/634 (17%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN 135
             +++DLS N            + ++L++L LS  E E         L  L  L L+   
Sbjct: 33  STKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 136 LNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIY 195
           +            L SL  L      L  +    +  L     +L  L +  N + S   
Sbjct: 92  IQSFSP--GSFSGLTSLENLVAVETKLASLESFPIGQL----ITLKKLNVAHNFIHSCKL 145

Query: 196 PWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQ 255
           P  F+  + LV +DL  N +Q   +     +     +         L +  N ++  I  
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV------NLSLDMSLNPID-FIQD 198

Query: 256 WLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIII 315
              +  KL  L+L GN  +  + ++    L+ L    L    F  + + +   P     I
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS----I 254

Query: 316 LLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKL 375
           + G C +             I+   ++           F  L++ ++  +L+   IK  L
Sbjct: 255 MEGLCDV------------TIDEFRLTYTNDFSDDIVKFHCLAN-VSAMSLAGVSIK-YL 300

Query: 376 PNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFL 435
            ++         S+ I     +            L L+ NK S S   +       L +L
Sbjct: 301 EDVP--KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL---PSLSYL 355

Query: 436 DLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELP 495
           DLS N LS                      FSG    S    +S++ L L  N  I  + 
Sbjct: 356 DLSRNALS----------------------FSGCCSYSDLGTNSLRHLDLSFNGAI-IMS 392

Query: 496 SFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQI 555
           + F    +L  +D   + L           L KL+ L +       +       L+ +  
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 556 LDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGS 615
           L ++ N+        +  F        +NL                              
Sbjct: 453 LKMAGNSFKDNTLSNV--FANT-----TNL------------------------------ 475

Query: 616 QHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLD 675
                        LD S  +L          L  L  LN+S NNL    +   +QL SL 
Sbjct: 476 -----------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 676 FLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709
            LD S N+              L+  NL+ N+++
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  180 bits (459), Expect = 2e-48
 Identities = 87/508 (17%), Positives = 174/508 (34%), Gaps = 23/508 (4%)

Query: 63  LKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGN 122
           ++     +   L+HL +L L+ N       P     L  L  L     +        +G 
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182
           L  LK L++++  ++ S         L +L  ++L + ++  I  +DL  L  +     +
Sbjct: 127 LITLKKLNVAHNFIH-SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP-FDRMVSLRTLYLGFNELEE 241
           L +  N +   I    F    KL  L L  N    ++++     +  L    L   E ++
Sbjct: 186 LDMSLNPIDF-IQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 242 LFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLK 301
               +     +I + L  +   +   L+  +         F  L+N+ A+ L   S  +K
Sbjct: 244 ERNLE-IFEPSIMEGLCDVTIDE-FRLTYTNDFSD-DIVKFHCLANVSAMSLAGVS--IK 298

Query: 302 FSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTI 361
           +  D    F+   + +  CQ+       L     ++ L ++    S         L   +
Sbjct: 299 YLEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKGSI--SFKKVALPS-L 352

Query: 362 ADFNLSNNHIKGKLPNLSLRFDPFSS--SIDISSNYFEGLIPPLPSNAS--VLNLSRNKF 417
           +  +LS N +       S      +S   +D+S N    +            L+   +  
Sbjct: 353 SYLDLSRNALS-FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL 411

Query: 418 SESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSM-GF 476
                F   ++  KL +LD+S           ++    L  L +A N F      ++   
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 477 LHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS 536
             ++  L L    L       F +  +L L+++  N L     +     L  L  L    
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-QLYSLSTLDCSF 530

Query: 537 NKFHGNIPFQVCQLSYIQILDLSLNNIS 564
           N+   +          +   +L+ N+++
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  177 bits (450), Expect = 2e-47
 Identities = 99/640 (15%), Positives = 174/640 (27%), Gaps = 108/640 (16%)

Query: 114 GPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLP-SLRTLNLEHCHLPPIIPSDLLH 172
           G +   +  +  +         L+      ++ D +P S + ++L    L  +      +
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS------KVPDDIPSSTKNIDLSFNPLKILKSYSFSN 54

Query: 173 LNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTL 232
                S L  L L    + + I    ++    L  L L  N +Q      F  + SL  L
Sbjct: 55  F----SELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109

Query: 233 YLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALH 292
                +L  L           +  + ++  L  L+++ N +      + FS L+NL  + 
Sbjct: 110 VAVETKLASL----------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

Query: 293 LDDNSFT----LKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISD 348
           L  N                P   + + +    +            ++  L +     S 
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSS 218

Query: 349 TVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS-------SIDISSNYFEGLIP 401
            +          +    L     K +                       ++         
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 402 PL---PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAV 458
                 +N S ++L+                 K + L +    L    P   +    L  
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYLEDV---PKHFKWQSLSIIRCQLKQ-FPT--LDLPFLKS 332

Query: 459 LSLANNFFSGKIPKSMGFLHSIQTLSLYNNSL--IGELPSFFKSCSQLILMDLGKNGLSG 516
           L+L  N   G I      L S+  L L  N+L   G         + L  +DL  NG   
Sbjct: 333 LTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390

Query: 517 EIPTWIGEGLPKLVVLSLKSNKFHGNIPFQV-CQLSYIQILDLSLNNISGIIPKCLNNFT 575
               +   GL +L  L  + +       F     L  +  LD+S  N            T
Sbjct: 391 MSANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 576 GMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNK 635
                   +L                                           L  + N 
Sbjct: 449 --------SL-----------------------------------------NTLKMAGNS 459

Query: 636 LSGTIPEEIM-DLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQ 694
                   +  +   L  L+LS+  L        D L  L  L++S N  +    S   Q
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 695 LSRLSVMNLSYNNLSGKIP----LGTQLQSFNASVYAGNP 730
           L  LS ++ S+N +             L  FN +    N 
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT---NNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (395), Expect = 4e-40
 Identities = 81/481 (16%), Positives = 154/481 (32%), Gaps = 46/481 (9%)

Query: 62  PLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEG-PIPSQL 120
           P++     S   L  L +L   E   +       IG L  L+ L+++        +P+  
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 121 GNLSRLKYLDLSYINLNK-SRDWLRIIDKLP-SLRTLNLEHCHLPPIIPSDLLHLNFSTS 178
            NL+ L ++DLSY  +   + + L+ + + P    +L++    +  I       +     
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE- 208

Query: 179 SLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSL------LEPFDRMVSLRTL 232
               L L  N  SS+I        + L V  L     +             + +  +   
Sbjct: 209 ----LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 233 YL----------------GFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGV 276
                                 +  + L    +    +  + + +K  +LS+    L   
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQF 322

Query: 277 VTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMG--PHFPKWLQTQN 334
                  +L  LK+L L  N  ++ F    +P   L  + L    +             N
Sbjct: 323 P----TLDLPFLKSLTLTMNKGSISFKKVALP--SLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 335 QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSN 394
            +  LD+S  G    +   F  L   +   +  ++ +K      +         +DIS  
Sbjct: 377 SLRHLDLSFNGAI-IMSANFMGLEE-LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 395 YFEGLIPPLPSNAS---VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWM 451
             +     +    +    L ++ N F ++       N   L FLDLS   L       + 
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 452 QFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGK 511
              RL +L++++N            L+S+ TL    N +             L   +L  
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

Query: 512 N 512
           N
Sbjct: 555 N 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.0 bits (229), Expect = 2e-19
 Identities = 42/186 (22%), Positives = 62/186 (33%), Gaps = 6/186 (3%)

Query: 54  LQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFE 113
           L+ L  S      +S + + L  L+HLD   +            SL KL YL +S    +
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 114 GPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHL 173
                    L+ L  L ++  N  K      +     +L  L+L  C L  I       L
Sbjct: 438 IDFDGIFLGLTSLNTLKMAG-NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 174 NFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLY 233
                 L  L +  N+L        +N    L  LD   N ++ S         SL    
Sbjct: 497 ----HRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

Query: 234 LGFNEL 239
           L  N +
Sbjct: 552 LTNNSV 557

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  191 bits (486), Expect = 6e-51
 Identities = 84/653 (12%), Positives = 178/653 (27%), Gaps = 120/653 (18%)

Query: 83  SENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDW 142
            E D  G +    + +  ++  LSL+    +G +P  +G L+ LK L     +   S   
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 143 LRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIY-PWLFNI 201
               D+  +          +        L  +   +    L    N             I
Sbjct: 366 --FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 202 SSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEEL---------FLGKNRLNGT 252
           S K   +   +N +   + +   R+  L+ +Y   +                   +    
Sbjct: 424 SLKDTQIGNLTNRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

Query: 253 INQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQL 312
                S +  L  + L        + +    +L  L++L++  N                
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGI------------- 528

Query: 313 IIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISD-TVPDWFWDLSHTIADFNLSNNHI 371
                              T  +I++  +    + +         +   +   +  +N +
Sbjct: 529 --SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK-LGLLDCVHNKV 585

Query: 372 K-----GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNAS---VLNLSRNKFSESISF 423
           +     G    L+         + +  N  E +     +       L  S NK     + 
Sbjct: 586 RHLEAFGTNVKLT--------DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637

Query: 424 LCSINGHKLEFLDLSNNILSGRLPDC-----WMQFDRLAVLSLANNFFSGKIPKSMGFLH 478
             + + + +  +D S N +     +        +    + ++L+ N       +      
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 479 SIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNK 538
            I T+ L NN +   +P                                 L  + L+ NK
Sbjct: 698 PISTIILSNNLM-TSIPE----------------NSLKPKDGNYK-NTYLLTTIDLRFNK 739

Query: 539 FHGNIP--FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQ 596
               +   F+   L Y+  +D+S N  S   P    N + +                   
Sbjct: 740 LTS-LSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQL------------------- 778

Query: 597 GIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLS 656
                                      G+    D   N++    P  I     L+ L + 
Sbjct: 779 ------------------------KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709
            N++   +  K+     L  LD++ N  +    +S+C      +  L Y+   
Sbjct: 815 SNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  183 bits (467), Expect = 2e-48
 Identities = 82/623 (13%), Positives = 173/623 (27%), Gaps = 115/623 (18%)

Query: 3   EEREALLEFKQSL-----------VDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIV 51
           ++ +AL    ++L           ++      +W    +        GV   N  G V  
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTG 327

Query: 52  LDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAE 111
           L L         KG +  ++ +L  L+ L    +  + S        L            
Sbjct: 328 LSLA----GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 112 FEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPI------ 165
                   L    RL   DL    +N++ +    +  +     ++L+   +  +      
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPE----MKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 166 IPSDLLHLNFSTSSLGALYLFENSLSS------------------SIYPWLFNISSKLVV 207
           I   +  L    + L  +Y   +  +                         ++    L  
Sbjct: 440 ISKAIQRL----TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 208 LDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALS 267
           ++L +      L +    +  L++L +  N        K      +        K+    
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFY 554

Query: 268 LSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFP 327
           +  N+L      +   ++  L  L    N          +  F       G+        
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH------LEAF-------GTNV------ 595

Query: 328 KWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS 387
                  ++  L +    I   +P+ F   +  +     S+N +K      + +      
Sbjct: 596 -------KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647

Query: 388 SIDISSNYFEGLIPPLPS--------NASVLNLSRNKFSESISFLCSINGHKLEFLDLSN 439
           S+D S N        +          NAS + LS N+  +  + L +  G  +  + LSN
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA-TGSPISTIILSN 706

Query: 440 NILS-------GRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGF--LHSIQTLSLYNNSL 490
           N+++             +     L  + L  N  +  +        L  +  + +  N  
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCF 765

Query: 491 IGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQL 550
               P+   + SQL    +                         + N+     P  +   
Sbjct: 766 -SSFPTQPLNSSQLKAFGIRHQ-------------------RDAEGNRILRQWPTGITTC 805

Query: 551 SYIQILDLSLNNISGIIPKCLNN 573
             +  L +  N+I  +  K    
Sbjct: 806 PSLIQLQIGSNDIRKVDEKLTPQ 828

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  166 bits (421), Expect = 1e-42
 Identities = 75/522 (14%), Positives = 149/522 (28%), Gaps = 87/522 (16%)

Query: 52  LDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAE 111
           L    + +       IS ++ +L  L+ +  + + F+       +   +     +   A+
Sbjct: 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY--DNIAVDWED----ANSDYAK 478

Query: 112 FEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLL 171
                     NL  L  ++L              +  LP L++LN+              
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLP--DFLYDLPELQSLNIACNRGISAAQLKAD 536

Query: 172 HLNFSTS-----SLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRM 226
               +        +   Y+  N+L             KL +LD   N +    LE F   
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTN 594

Query: 227 VSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELS 286
           V L  L L +N++EE+             + +   +++ L  S N L  +        + 
Sbjct: 595 VKLTDLKLDYNQIEEI----------PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644

Query: 287 NLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGI 346
            + ++    N                  +                       + +S   I
Sbjct: 645 VMGSVDFSYNKIGS------EGRNISCSMDDYKGI-------------NASTVTLSYNEI 685

Query: 347 SDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSN 406
                + F   S  I+   LSNN +                   I  N  +       + 
Sbjct: 686 QKFPTELFATGSP-ISTIILSNNLMT-----------------SIPENSLKPKDGNYKNT 727

Query: 407 AS--VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANN 464
                ++L  NK +       +     L  +D+S N  S   P   +   +L    + + 
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786

Query: 465 FFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGE 524
                                  N ++ + P+   +C  LI + +G N +  ++   +  
Sbjct: 787 ------------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL-- 825

Query: 525 GLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI 566
             P+L +L +  N         VC      +  L  +    I
Sbjct: 826 -TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  153 bits (388), Expect = 1e-38
 Identities = 75/562 (13%), Positives = 156/562 (27%), Gaps = 102/562 (18%)

Query: 199 FNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLS 258
            + + ++  L L     +G + +   ++  L+ L  G +                     
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE-------- 370

Query: 259 RMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLG 318
                D      + +     +        L    L  ++     + +  P  +   I L 
Sbjct: 371 --LTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLK 426

Query: 319 SCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNL 378
             Q+G          N+I             +      L+  +     +N+        +
Sbjct: 427 DTQIGNLT-------NRIT-----------FISKAIQRLTK-LQIIYFANSPFTYDNIAV 467

Query: 379 SLRFDPFSSSIDISSNYFEGLIPPLPSNAS---VLNLSRNKFSESI-SFLCSINGHKLEF 434
                      +              SN      + L        +  FL  +   +L+ 
Sbjct: 468 DWE------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL--PELQS 519

Query: 435 LDLSNNILSG---------RLPDCWMQFDRLAVLSLANNFFSGKIPKSMGF--LHSIQTL 483
           L+++ N             RL D      ++ +  +  N      P S     +  +  L
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLL 578

Query: 484 SLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNI 543
              +N +   L +F     +L  + L  N +  EIP        ++  L    NK    I
Sbjct: 579 DCVHNKV-RHLEAFGT-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-I 634

Query: 544 P--FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFL 601
           P  F    +  +  +D S N I         +       ++S + ++ N          +
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE---------I 685

Query: 602 ESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLS-------GTIPEEIMDLVGLVALN 654
           + +   +            +T   +  +  S N ++               +   L  ++
Sbjct: 686 QKFPTELF-----------ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 655 LSRNNLTGQITPKI--DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY------N 706
           L  N LT  ++       L  L  +D+S N F    P+     S+L    + +      N
Sbjct: 735 LRFNKLTS-LSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGN 792

Query: 707 NLSGKIPLG----TQLQSFNAS 724
            +  + P G      L      
Sbjct: 793 RILRQWPTGITTCPSLIQLQIG 814

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 25/206 (12%), Positives = 63/206 (30%), Gaps = 25/206 (12%)

Query: 532 LSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQK---SSSNLAIT 588
            + + + +       +     +  L L+     G +P  +   T + +     + +  ++
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTEL-KVLSFGTHSETVS 362

Query: 589 SNYTFERQ-GIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDL 647
                + +   +  E     + + +K    +Y   L L  +L  ++N+     P +    
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 648 VGLVALNLSR-NNLTGQITPKIDQLKSLDFLDLSQNQFVG-------------------G 687
           + L    +    N    I+  I +L  L  +  + + F                      
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

Query: 688 IPSSLCQLSRLSVMNLSYNNLSGKIP 713
              S   L  L+ + L       ++P
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLP 508

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 5e-06
 Identities = 14/115 (12%), Positives = 32/115 (27%), Gaps = 7/115 (6%)

Query: 629 LDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGI 688
            +  ++        ++ +   +  L+L+     G++   I QL  L  L    +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 689 PSSLCQ-------LSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP 736
                +         R   + + Y  +         L          NPE+  + 
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  165 bits (419), Expect = 2e-42
 Identities = 120/628 (19%), Positives = 216/628 (34%), Gaps = 59/628 (9%)

Query: 127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLF 186
           +     + NL +      +   L +   L L   ++  +  S    L      L  L L 
Sbjct: 7   RIAFYRFCNLTQ------VPQVLNTTERLLLSFNYIRTVTASSFPFL----EQLQLLELG 56

Query: 187 ENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGK 246
                 +I    F     L +LDL S+ +     + F  +  L  L L F  L +  L  
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 247 NRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHD- 305
                    +   +  L  L LS N +  +     F +L++LK++    N   L   H+ 
Sbjct: 117 G--------YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168

Query: 306 -WIPPFQLIIILLGSCQMGPHFPKWLQTQNQ------IEVLDISDAGISDTVPDWFWDLS 358
             +    L    L +  +                   +E+LD+S  G +  +   F +  
Sbjct: 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228

Query: 359 HTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFS 418
                F+L   H    +      F       D   N F GL     S+   L+LS     
Sbjct: 229 SKSQAFSLILAH---HIMGAGFGFHNIK---DPDQNTFAGLAR---SSVRHLDLSHGFVF 279

Query: 419 ESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLH 478
            S++         L+ L+L+ N ++    + +   D L VL+L+ N        +   L 
Sbjct: 280 -SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 479 SIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNK 538
            +  + L  N +       FK   +L  +DL  N L+          +P +  + L  NK
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI------HFIPSIPDIFLSGNK 392

Query: 539 FHGNIPFQVCQLSYIQILDLSLNNIS-GIIPKCLNNFTGMAQKSSSNLAITSNYTFERQG 597
               +P      + I + +  L N+        + +   +    +   + + + T     
Sbjct: 393 LV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP--SE 449

Query: 598 IEFLES-YVDNVVLTWKGSQHEYRST---LGLVKILDFSMNKLSGTIPEEIMDLVGLVAL 653
              LE  ++   +L               L  +++L  + N L+   P     L  L  L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 654 NLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP 713
           +L+ N LT       D   +L+ LD+S+NQ +   P        LSV+++++N    +  
Sbjct: 510 SLNSNRLTV--LSHNDLPANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICEC- 563

Query: 714 LGTQLQSFNASVYAGNPELCGLPLRNKC 741
              +L +F   +   N  + G P    C
Sbjct: 564 ---ELSTFINWLNHTNVTIAGPPADIYC 588

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  151 bits (384), Expect = 4e-38
 Identities = 99/528 (18%), Positives = 185/528 (35%), Gaps = 37/528 (7%)

Query: 66  TISPSLLK-LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLS 124
           T++ S    L  L+ L+L       +   E   +L  LR L L S++     P     L 
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97

Query: 125 RLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALY 184
            L  L L +  L+ +         L +L  L+L    +  +            +SL ++ 
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG---KLNSLKSID 154

Query: 185 LFENSLSSSIYPWLFNISSK-LVVLDLDSNLLQGSLLEPFD------RMVSLRTLYLGFN 237
              N +       L  +  K L    L +N L   +   +       R + L  L +  N
Sbjct: 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214

Query: 238 ELEELFLG--KNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSEL--SNLKALHL 293
                  G   N ++ +    L   + +       +++     ++ F+ L  S+++ L L
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDL 273

Query: 294 DDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDW 353
                    S  +     L ++ L   ++     +     + ++VL++S   + +     
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333

Query: 354 FWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLS 413
           F+ L   +A  +L  NHI   + + + +F     ++D+  N    +      +   + LS
Sbjct: 334 FYGL-PKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI--HFIPSIPDIFLS 389

Query: 414 RNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQ-FDRLAVLSLANNFFSGKIPK 472
            NK         +        + LS N L       ++     L +L L  N FS     
Sbjct: 390 GNKLVTLPKINLT-----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS-SCSG 443

Query: 473 SMGF--LHSIQTLSLYNNSLIGE-----LPSFFKSCSQLILMDLGKNGLSGEIPTWIGEG 525
                   S++ L L  N L            F+  S L ++ L  N L+  +P  +   
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSH 502

Query: 526 LPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNN 573
           L  L  LSL SN+    +       + ++ILD+S N +    P    +
Sbjct: 503 LTALRGLSLNSNRLT-VLSHNDLPAN-LEILDISRNQLLAPNPDVFVS 548

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  110 bits (277), Expect = 4e-25
 Identities = 80/419 (19%), Positives = 152/419 (36%), Gaps = 52/419 (12%)

Query: 57  LVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNK-----------LRYL 105
           L     +      +  +   L  LD+S N ++      F  +++K           +   
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 106 SLSSAEFEGPIPSQLGNLSR--LKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLP 163
                  + P  +    L+R  +++LDLS+  +       R+ + L  L+ LNL +  + 
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS--RVFETLKDLKVLNLAYNKIN 303

Query: 164 PIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPF 223
            I       L     +L  L L  N L   +Y   F    K+  +DL  N +     + F
Sbjct: 304 KIADEAFYGL----DNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 224 DRMVSLRTLYLGFNE---------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLT 274
             +  L+TL L  N          + ++FL  N+L       L+     + + LS N L 
Sbjct: 359 KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLE 414

Query: 275 GVVTESVFSELSNLKALHLDDNSFT-LKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQ 333
            +        + +L+ L L+ N F+             L  + LG   +   +   L   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 334 N-----QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSS 388
                  ++VL ++   ++   P  F  L+  +   +L++N +        L  +   ++
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA-LRGLSLNSNRLT------VLSHNDLPAN 527

Query: 389 ---IDISSNYFEGLIPPLPSNASVLNLSRNKFSESIS---FLCSINGHKLEFLDLSNNI 441
              +DIS N      P +  + SVL+++ NKF        F+  +N   +       +I
Sbjct: 528 LEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADI 586

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  156 bits (396), Expect = 2e-40
 Identities = 118/609 (19%), Positives = 199/609 (32%), Gaps = 107/609 (17%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN 135
             ++LDLS N         F  S  +L+ L LS  E +        +LS L  L L+   
Sbjct: 29  STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 136 LNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIY 195
           +            L SL+ L     +L  +    + HL     +L  L +  N + S   
Sbjct: 88  IQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHL----KTLKELNVAHNLIQSFKL 141

Query: 196 PWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQ 255
           P  F+  + L  LDL SN +Q         +  +  L L       L L  N +N  I  
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL------SLDLSLNPMN-FIQP 194

Query: 256 WLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIII 315
              +  +L  L+L  N  +  V ++    L+ L+   L    F  + + +      L   
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL--- 251

Query: 316 LLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKL 375
                            + ++  LD     I D     F  L++ ++ F+L +  I+ ++
Sbjct: 252 --------EGLCNLTIEEFRLAYLDYYLDDIIDL----FNCLTN-VSSFSLVSVTIE-RV 297

Query: 376 PNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFL 435
            + S  ++     +++ +  F         +   L  + NK   + S    ++   LEFL
Sbjct: 298 KDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFL 352

Query: 436 DLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELP 495
           DLS N               L+     +    G          S++ L L  N +I  + 
Sbjct: 353 DLSRN--------------GLSFKGCCSQSDFG--------TTSLKYLDLSFNGVI-TMS 389

Query: 496 SFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQI 555
           S F    QL  +D   + L       +   L  L+ L +               LS +++
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 556 LDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGS 615
           L ++ N+         + FT +      NL                              
Sbjct: 450 LKMAGNSFQENFLP--DIFTEL-----RNL------------------------------ 472

Query: 616 QHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLD 675
                        LD S  +L    P     L  L  LN++ N L        D+L SL 
Sbjct: 473 -----------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521

Query: 676 FLDLSQNQF 684
            + L  N +
Sbjct: 522 KIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  143 bits (362), Expect = 4e-36
 Identities = 92/480 (19%), Positives = 173/480 (36%), Gaps = 20/480 (4%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYL 129
           +   L HL  L L+ N    S        L+ L+ L              +G+L  LK L
Sbjct: 71  AYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 130 DLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENS 189
           ++++ NL +S         L +L  L+L    +  I  +DL  L+       +L L  N 
Sbjct: 130 NVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 190 LSSSIYPWLFNISSKLVVLDLDSNLLQGSLLE-PFDRMVSLRTLYLGFNELEELFLGKNR 248
           ++  I P  F    +L  L L +N    ++++     +  L    L   E       +  
Sbjct: 189 MNF-IQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 249 LNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIP 308
               + + L  +   +   L+           +F+ L+N+ +  L   +  ++   D+  
Sbjct: 247 DKSAL-EGLCNLTIEE-FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT--IERVKDFSY 302

Query: 309 PFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSN 368
            F    + L +C+ G      L++   ++ L  +     +       DL   +   +LS 
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFS--EVDLPS-LEFLDLSR 356

Query: 369 NHIKGK-LPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNAS--VLNLSRNKFSESISFLC 425
           N +  K   + S         +D+S N    +            L+   +   +   F  
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 426 SINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSM-GFLHSIQTLS 484
            ++   L +LD+S+          +     L VL +A N F       +   L ++  L 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 485 LYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIP 544
           L    L    P+ F S S L ++++  N L   +P  I + L  L  + L +N +  + P
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (361), Expect = 5e-36
 Identities = 101/585 (17%), Positives = 182/585 (31%), Gaps = 110/585 (18%)

Query: 161 HLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLL 220
            +P  +P    +L+ S           N L   +  + F    +L VLDL    +Q    
Sbjct: 21  KIPDNLPFSTKNLDLS----------FNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 221 EPFDRMVSLRTLYLGFNE--------------LEELFLGKNRLNGTINQWLSRMYKLDAL 266
             +  +  L TL L  N               L++L   +  L    N  +  +  L  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 267 SLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIIL----LGSCQM 322
           +++ N +        FS L+NL+ L L  N     +  D     Q+ ++     L    M
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 323 GPHFPKWLQTQNQIEVLDISDAGISDTVPD-WFWDLSHT-----IADFNLSNNHIK---- 372
                     + ++  L + +   S  V       L+       +     +  +++    
Sbjct: 190 N-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 373 ---GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSING 429
                L NL++  +   + +D   +    L   L  N S  +L          F  +   
Sbjct: 249 SALEGLCNLTIE-EFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIERVKDFSYNFGW 306

Query: 430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNS 489
             LE ++              ++   L  L+  +N       +    L S++ L L  N 
Sbjct: 307 QHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNG 358

Query: 490 L--IGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQV 547
           L   G         + L  +DL  NG+   + +    GL +L  L  + +       F V
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 548 -CQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVD 606
              L  +  LD+S  +         N  +        +L                     
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLS--------SL--------------------- 447

Query: 607 NVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMD-LVGLVALNLSRNNLTGQIT 665
                               ++L  + N        +I   L  L  L+LS+  L  Q++
Sbjct: 448 --------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLS 486

Query: 666 PKI-DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709
           P   + L SL  L+++ NQ          +L+ L  + L  N   
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (252), Expect = 3e-22
 Identities = 55/284 (19%), Positives = 100/284 (35%), Gaps = 45/284 (15%)

Query: 69  PSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKY 128
                 +  +HL+L    F   + P     L  L+ L+ +S +          +L  L++
Sbjct: 298 KDFSYNFGWQHLELVNCKFG--QFPTL--KLKSLKRLTFTSNKGGNAFSEV--DLPSLEF 351

Query: 129 LDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFEN 188
           LDLS   L+      +      SL+ L+L    +   + S+ L L      L  L    +
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL----EQLEHLDFQHS 406

Query: 189 SLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN----------- 237
           +L       +F     L+ LD+     + +    F+ + SL  L +  N           
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 238 ----ELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHL 293
                L  L L + +L        + +  L  L+++ N L   V + +F  L++L+ + L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWL 525

Query: 294 DDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIE 337
             N +                    SC    +  +WL   +Q E
Sbjct: 526 HTNPWD------------------CSCPRIDYLSRWLNKNSQKE 551

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.0 bits (234), Expect = 4e-20
 Identities = 54/295 (18%), Positives = 82/295 (27%), Gaps = 63/295 (21%)

Query: 66  TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEG----------- 114
            I P   K   L  L L  N  S + +   I  L  L    L   EF             
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 115 ----------------------PIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSL 152
                                  I      L+ +    L  + + + +D          L
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHL 309

Query: 153 RTLNLEHCHLPPIIPSDLLHLNFST------------SSLGALYLFENSLSS-SIYPWLF 199
             +N +    P +    L  L F++             SL  L L  N LS         
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 200 NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN---------------ELEELFL 244
             ++ L  LDL  N +  ++   F  +  L  L    +                L  L +
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 245 GKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
                    N   + +  L+ L ++GNS        +F+EL NL  L L      
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (331), Expect = 3e-32
 Identities = 99/518 (19%), Positives = 177/518 (34%), Gaps = 76/518 (14%)

Query: 102 LRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCH 161
            R  S +S      IPS L   + +K LDLS+  +         +    +L+ L L+   
Sbjct: 12  GRSRSFTS------IPSGL--TAAMKSLDLSFNKITYIGH--GDLRACANLQVLILKSSR 61

Query: 162 LPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG-SLL 220
           +  I       L     SL  L L +N L SS+    F   S L  L+L  N  Q   + 
Sbjct: 62  INTIEGDAFYSL----GSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 221 EPFDRMVSLRTLYLGFNE---------------LEELFLGKNRLNGTINQWLSRMYKLDA 265
             F  + +L+TL +G  E               L EL +    L    +Q L  +  +  
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 266 LSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT----------LKFSHDWIPPFQLIII 315
           L+L  +     + E     LS+++ L L D +               S      F+  ++
Sbjct: 177 LTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 316 LLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSH-------TIADFNLSN 368
              S        +++   +++E  D +  G+ D  P     +S        TI   ++  
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 369 NHIKGKLPNLSLRFDPFSS--SIDISSNYFEGLIPPLPSNAS---VLNLSRNKFSESI-- 421
            ++   L  +   +        I + ++    +      +      L+LS N   E    
Sbjct: 296 FYLFYDLSTV---YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 422 SFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLA---VLSLANNFFSGKIPKSMGFLH 478
           +  C      L+ L LS N L   +         L     L ++ N F   +P S  +  
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410

Query: 479 SIQTLSLYNNSLIGELPSFFKSC-SQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537
            ++ L+L +      +          L ++D+  N L           LP+L  L +  N
Sbjct: 411 KMRFLNLSSTG----IRVVKTCIPQTLEVLDVSNNNLDS-----FSLFLPRLQELYISRN 461

Query: 538 KFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFT 575
           K    +P        + ++ +S N +  +     +  T
Sbjct: 462 KLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLT 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (331), Expect = 3e-32
 Identities = 89/566 (15%), Positives = 167/566 (29%), Gaps = 87/566 (15%)

Query: 149 LPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVL 208
             ++++L+L    +  I   DL       ++L  L L  + +++ I    F     L  L
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRAC----ANLQVLILKSSRINT-IEGDAFYSLGSLEHL 79

Query: 209 DLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSL 268
           DL  N L       F  + SL+ L L  N  + L          +      +  L  L +
Sbjct: 80  DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL---------GVTSLFPNLTNLQTLRI 130

Query: 269 SGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIIL-LGSCQMGPHFP 327
                   +    F+ L++L  L +   S    +    +   + I  L L   +      
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 328 KWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS 387
            +    + +  L++ D  ++         +    +            L + S  F+    
Sbjct: 190 IFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRG-SVLTDES--FNELLK 245

Query: 388 SIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLP 447
            +       E        N   L       S+ +S L  +    +  L +    L   L 
Sbjct: 246 LLRYILELSEVEFDDCTLNG--LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 448 DCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNN---SLIGELPSFFKSCSQL 504
             +   +++  +++ N+            L S++ L L  N       +  +   +   L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 505 ILMDLGKNGLSGEIPTWIG--EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNN 562
             + L +N L   +         L  L  L +  N FH  +P        ++ L+LS   
Sbjct: 364 QTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421

Query: 563 ISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRST 622
           I  +                                                        
Sbjct: 422 IRVVKTCIPQT------------------------------------------------- 432

Query: 623 LGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQN 682
              +++LD S N L  +     + L  L  L +SRN L     P       L  + +S+N
Sbjct: 433 ---LEVLDVSNNNLD-SFS---LFLPRLQELYISRNKLK--TLPDASLFPVLLVMKISRN 483

Query: 683 QFVGGIPSSLCQLSRLSVMNLSYNNL 708
           Q          +L+ L  + L  N  
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (329), Expect = 6e-32
 Identities = 79/462 (17%), Positives = 161/462 (34%), Gaps = 57/462 (12%)

Query: 66  TISPSLL-KLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQ-LGNL 123
           ++S S    L  L++L+L  N +    +     +L  L+ L + + E    I       L
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 124 SRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGAL 183
           + L  L++  ++L   +   + +  +  +  L L       ++      L    SS+  L
Sbjct: 148 TSLNELEIKALSLRNYQS--QSLKSIRDIHHLTLHLSESAFLLEIFADIL----SSVRYL 201

Query: 184 YLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEEL- 242
            L + +L +        +      +   +        E F+ ++ L    L  +E+E   
Sbjct: 202 ELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 243 --FLGKNRLNGTINQWLSRMYKLDALSLSGNSLTG----VVTESVFSELSNLKALHLDDN 296
               G    N + +  +S + K++ +++    +          +V+S L  +K + ++++
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 297 SFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDW--F 354
                                    +   F + L+    +E LD+S+  + +        
Sbjct: 321 KVF---------------------LVPCSFSQHLK---SLEFLDLSENLMVEEYLKNSAC 356

Query: 355 WDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS--SIDISSNYFEGLIPPL--PSNASVL 410
                ++    LS NH++  +           +  S+DIS N F  +      P     L
Sbjct: 357 KGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415

Query: 411 NLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKI 470
           NLS       I  + +     LE LD+SNN     L    +   RL  L ++ N     +
Sbjct: 416 NLSSTG----IRVVKTCIPQTLEVLDVSNN----NLDSFSLFLPRLQELYISRNKLK-TL 466

Query: 471 PKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN 512
           P +      +  + +  N L       F   + L  + L  N
Sbjct: 467 PDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  126 bits (318), Expect = 1e-30
 Identities = 102/588 (17%), Positives = 182/588 (30%), Gaps = 95/588 (16%)

Query: 80  LDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKS 139
            D     F+   IP  +     ++ L LS  +        L   + L+ L L    +N  
Sbjct: 10  CDGRSRSFT--SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65

Query: 140 RDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLF 199
                    L SL  L+L   HL  +  S    L    SSL  L L  N   +     LF
Sbjct: 66  EG--DAFYSLGSLEHLDLSDNHLSSLSSSWFGPL----SSLKYLNLMGNPYQTLGVTSLF 119

Query: 200 NISSKLVVLDLDSNLLQGSLLEP-FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLS 258
              + L  L + +      +    F  + SL  L +    L                 L 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ----------SLK 169

Query: 259 RMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLG 318
            +  +  L+L  +     + E     LS+++ L L D +              L +    
Sbjct: 170 SIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA------RFQFSPLPV---- 218

Query: 319 SCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNL 378
                       +  + ++ L    + ++D   +    L   I    LS           
Sbjct: 219 -----------DEVSSPMKKLAFRGSVLTDESFNELLKLLRYI--LELSEVEFDD-CTLN 264

Query: 379 SLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLS 438
            L     S S  +S       +         L++ +      +S + S    K++ + + 
Sbjct: 265 GLGDFNPSESDVVSELGKVETV-----TIRRLHIPQFYLFYDLSTVYS-LLEKVKRITVE 318

Query: 439 NNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGF---LHSIQTLSLYNNSL--IGE 493
           N+ +             L  L L+ N    +  K+        S+QTL L  N L  + +
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 494 LPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYI 553
                 +   L  +D+ +N     +P    +   K+  L+L S      +    C    +
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH-PMPDSC-QWPEKMRFLNLSSTGIR-VVKT--CIPQTL 433

Query: 554 QILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWK 613
           ++LD+S NN+       L             L I+ N       ++ L            
Sbjct: 434 EVLDVSNNNLDSF-SLFLPRLQ--------ELYISRNK------LKTLPDAS-------- 470

Query: 614 GSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMD-LVGLVALNLSRNNL 660
                      ++ ++  S N+L  ++P+ I D L  L  + L  N  
Sbjct: 471 --------LFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  124 bits (314), Expect = 5e-30
 Identities = 93/497 (18%), Positives = 167/497 (33%), Gaps = 45/497 (9%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPEFI-GSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKY 128
            L    +L+ L L  +    + I      SL  L +L LS         S  G LS LKY
Sbjct: 45  DLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102

Query: 129 LDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFEN 188
           L+L      ++     +   L +L+TL + +      I           +SL  L +   
Sbjct: 103 LNLMGNPY-QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA---GLTSLNELEIKAL 158

Query: 189 SLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNR 248
           SL  +           +  L L  +     L    D + S+R L L    L         
Sbjct: 159 SL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL- 216

Query: 249 LNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT--LKFSHDW 306
               +++  S M KL          +      +   +  L  +  DD +      F+   
Sbjct: 217 ---PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 307 IPPFQLIIIL---------LGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDL 357
                 +  +         +    +            +++ + + ++ +   VP  F   
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQH 332

Query: 358 SHTIADFNLSNNHIKGKLPNLSLRFDPFSS--SIDISSNYFEGLIPPLPSNAS-----VL 410
             ++   +LS N +  +    S     + S  ++ +S N+   +        +      L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 411 NLSRNKFSESISFLCSING-HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGK 469
           ++SRN F        S     K+ FL+LS+  +   +  C      L VL ++NN     
Sbjct: 393 DISRNTFH---PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-S 445

Query: 470 IPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKL 529
                 FL  +Q L +  N L   LP        L++M + +N L   +P  I + L  L
Sbjct: 446 FSL---FLPRLQELYISRNKLK-TLPDASLF-PVLLVMKISRNQLK-SVPDGIFDRLTSL 499

Query: 530 VVLSLKSNKFHGNIPFQ 546
             + L +N +  + P  
Sbjct: 500 QKIWLHTNPWDCSCPRI 516

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  101 bits (254), Expect = 1e-22
 Identities = 62/347 (17%), Positives = 122/347 (35%), Gaps = 29/347 (8%)

Query: 386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSE----SISFLCSINGHKLEFLDLSNNI 441
           S   D  S  F  +   L +    L+LS NK +      +          L+ L L ++ 
Sbjct: 7   SGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC-----ANLQVLILKSSR 61

Query: 442 LSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIG-ELPSFFKS 500
           ++    D +     L  L L++N  S       G L S++ L+L  N      + S F +
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 501 CSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSL 560
            + L  + +G      EI      GL  L  L +K+          +  +  I  L L L
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 561 NNISGIIPKCLNNFTGMAQKSSSNLAITSN---------YTFERQGIEFLESYVDNVVLT 611
           +  + ++    +  + +      +  +             +   + + F  S + +    
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 612 WKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEI--------MDLVGLVALNLSRNNLTGQ 663
                  Y   L  V+  D ++N L    P E         ++ V +  L++ +  L   
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 664 ITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQ-LSRLSVMNLSYNNLS 709
           ++     L+ +  + +  ++    +P S  Q L  L  ++LS N + 
Sbjct: 302 LSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 75/526 (14%), Positives = 156/526 (29%), Gaps = 79/526 (15%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSR 259
            +++ +  LDL  N +            +L+ L L  + +  +                 
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI----------EGDAFYS 72

Query: 260 MYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGS 319
           +  L+ L LS N L+  ++ S F  LS+LK L+L  N +        +    L   L   
Sbjct: 73  LGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQT------LGVTSLFPNL--- 122

Query: 320 CQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDW-FWDLSHTIADFNLSNNHIKGKLPNL 378
                           ++ L I +      +    F  L+  + +  +    ++      
Sbjct: 123 --------------TNLQTLRIGNVETFSEIRRIDFAGLTS-LNELEIKALSLR------ 161

Query: 379 SLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLS 438
                      +  S   + +      +   L L  ++ +  +     I    + +L+L 
Sbjct: 162 -----------NYQSQSLKSI-----RDIHHLTLHLSESAFLLEIFADIL-SSVRYLELR 204

Query: 439 NNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFF 498
           +  L+          +  + +       S    +S   L  +    L  + +       F
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EF 258

Query: 499 KSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDL 558
             C+   L D   +  S  +          +  L +       ++      L  ++ + +
Sbjct: 259 DDCTLNGLGDFNPS-ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 559 SLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLES----YVDNVVLTWKG 614
             + +  +      +   +     S   +   Y           S     +    L    
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 615 SQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSL 674
              E   TL  +  LD S N     +P+       +  LNLS   +   +   I   ++L
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTL 433

Query: 675 DFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQS 720
           + LD+S N         L +L  L    +S N L   +P  +    
Sbjct: 434 EVLDVSNNNL-DSFSLFLPRLQEL---YISRNKLK-TLPDASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.6 bits (220), Expect = 2e-18
 Identities = 55/282 (19%), Positives = 104/282 (36%), Gaps = 44/282 (15%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYL 129
             ++   +R L + +       +      L K++ +++ +++      S   +L  L++L
Sbjct: 281 GKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339

Query: 130 DLSYINL-NKSRDWLRIIDKLPSLRTLNLEHCHLP--PIIPSDLLHLNFSTSSLGALYLF 186
           DLS   +  +           PSL+TL L   HL         LL L     +L +L + 
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL----KNLTSLDIS 395

Query: 187 ENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE-------- 238
            N+      P       K+  L+L S  ++  +        +L  L +  N         
Sbjct: 396 RNTFHPM--PDSCQWPEKMRFLNLSSTGIR-VV--KTCIPQTLEVLDVSNNNLDSFSLFL 450

Query: 239 --LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
             L+EL++ +N+L    +  L     L  + +S N L   V + +F  L++L+ + L  N
Sbjct: 451 PRLQELYISRNKLKTLPDASLFP--VLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507

Query: 297 SFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEV 338
            +                    SC    +  +WL   +Q E 
Sbjct: 508 PWD------------------CSCPRIDYLSRWLNKNSQKEQ 531

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (310), Expect = 6e-30
 Identities = 87/517 (16%), Positives = 165/517 (31%), Gaps = 90/517 (17%)

Query: 69  PSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKY 128
            +   L       L + + +          L+++  L       +      +  L+ L  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQ 72

Query: 129 LDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFEN 188
           ++ S   L      +  +  L  L  + + +  +  I P   L      ++L  L LF N
Sbjct: 73  INFSNNQLTD----ITPLKNLTKLVDILMNNNQIADITPLANL------TNLTGLTLFNN 122

Query: 189 SLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN----------- 237
            ++           + L  L+L SN +    +     + SL+ L  G             
Sbjct: 123 QITDIDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLT 177

Query: 238 ELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNS 297
            LE L +  N+++      L+++  L++L  + N ++ +   +    L+NL  L L+ N 
Sbjct: 178 TLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI---TPLGILTNLDELSLNGNQ 232

Query: 298 FTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDL 357
                    I                        +   +  LD+++  IS+  P     L
Sbjct: 233 LKD------IGTL--------------------ASLTNLTDLDLANNQISNLAP--LSGL 264

Query: 358 SHTIADFNLSNNHIK-----GKLPNLSLRFDPFSSSIDISSNYFEGLIP-PLPSNASVLN 411
           +  + +  L  N I        L  L        ++++++ N  E + P     N + L 
Sbjct: 265 TK-LTELKLGANQISNISPLAGLTAL--------TNLELNENQLEDISPISNLKNLTYLT 315

Query: 412 LSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIP 471
           L  N  S  IS + S+   KL+ L   NN +S            +  LS  +N  S   P
Sbjct: 316 LYFNNIS-DISPVSSLT--KLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

Query: 472 KSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVV 531
             +  L  I  L L + +      ++  + S    +      L    P  I +       
Sbjct: 371 --LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISD-GGSYTE 425

Query: 532 LSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIP 568
             +  N             S    +       SG + 
Sbjct: 426 PDITWNLPSYT-NEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (268), Expect = 1e-24
 Identities = 82/411 (19%), Positives = 145/411 (35%), Gaps = 79/411 (19%)

Query: 66  TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSR 125
           T    L  L +L  L+LS N  S       +  L  L+ LS  + +     P  L NL+ 
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGN-QVTDLKP--LANLTT 178

Query: 126 LKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYL 185
           L+ LD+S   ++     + ++ KL +L +L   +  +  I P  +L      ++L  L L
Sbjct: 179 LERLDISSNKVSD----ISVLAKLTNLESLIATNNQISDITPLGIL------TNLDELSL 228

Query: 186 FENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLG 245
             N L            + L  LDL +N +    L P   +  L  L LG N++  +   
Sbjct: 229 NGNQLKD---IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP- 282

Query: 246 KNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHD 305
                      L+ +  L  L L+ N L  +   S  S L NL  L L  N+ +      
Sbjct: 283 -----------LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNIS------ 322

Query: 306 WIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFN 365
                   I  + S               +++ L   +  +SD       +L++ I   +
Sbjct: 323 -------DISPVSSLT-------------KLQRLFFYNNKVSD--VSSLANLTN-INWLS 359

Query: 366 LSNNHIK-----GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSES 420
             +N I        L  +        + + ++   +        +N S+ N  +N     
Sbjct: 360 AGHNQISDLTPLANLTRI--------TQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

Query: 421 ISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIP 471
           I+     +G      D++ N+ S    +    F +   +      FSG + 
Sbjct: 412 IAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  105 bits (265), Expect = 4e-24
 Identities = 87/534 (16%), Positives = 156/534 (29%), Gaps = 134/534 (25%)

Query: 198 LFNIS--SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE------------LEELF 243
           +F  +  ++ +   L    +          +  + TL                  L ++ 
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQIN 74

Query: 244 LGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFS 303
              N+L       L  + KL  + ++ N +  +   +  + L+NL  L L +N  T    
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQIT---- 125

Query: 304 HDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIAD 363
                     I  L +                +  L++S   ISD        L+  +  
Sbjct: 126 ---------DIDPLKNLT-------------NLNRLELSSNTISDISA--LSGLTS-LQQ 160

Query: 364 FNLSNNHIK----GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNAS--VLNLSRNKF 417
            +  N          L  L          +DISSN     I  L    +   L  + N+ 
Sbjct: 161 LSFGNQVTDLKPLANLTTLE--------RLDISSNKVSD-ISVLAKLTNLESLIATNNQI 211

Query: 418 SESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFL 477
           S  I+ L  +    L+ L L+ N L             L  L LANN  S   P  +  L
Sbjct: 212 S-DITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGL 264

Query: 478 HSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537
             +  L L  N +     S     + L  ++L +N L    P      L  L  L+L  N
Sbjct: 265 TKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPI---SNLKNLTYLTLYFN 319

Query: 538 KFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQG 597
                 P     L+ +Q L    N +S +                               
Sbjct: 320 NISDISPVS--SLTKLQRLFFYNNKVSDV-----------------------------SS 348

Query: 598 IEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSR 657
           +  L +                      +  L    N++S   P  + +L  +  L L+ 
Sbjct: 349 LANLTN----------------------INWLSAGHNQISDLTP--LANLTRITQLGLND 384

Query: 658 NNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGK 711
              T         +   + +       +   P+++      +  ++++N  S  
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  101 bits (255), Expect = 6e-23
 Identities = 93/497 (18%), Positives = 173/497 (34%), Gaps = 100/497 (20%)

Query: 235 GFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLD 294
              E  +  LGK  +  T++   + + ++  L      +  +        L+NL  ++  
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFS 76

Query: 295 DNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWF 354
           +N  T              I  L +               ++  + +++  I+D  P   
Sbjct: 77  NNQLT-------------DITPLKNLT-------------KLVDILMNNNQIADITP--L 108

Query: 355 WDLSHTIADFNLSNNHIK-----GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLP--SNA 407
            +L++ +    L NN I        L NL+         +++SSN     I  L   ++ 
Sbjct: 109 ANLTN-LTGLTLFNNQITDIDPLKNLTNLN--------RLELSSNTISD-ISALSGLTSL 158

Query: 408 SVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFS 467
             L+   N+ ++        N   LE LD+S+N +S        +   L  L   NN  S
Sbjct: 159 QQLSFG-NQVTDLKPL---ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS 212

Query: 468 GKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLP 527
              P  +G L ++  LSL  N L         S + L  +DL  N +S   P     GL 
Sbjct: 213 DITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL---SGLT 265

Query: 528 KLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAI 587
           KL  L L +N+     P     L+ +  L+L+ N +  I P  ++N   +     + L +
Sbjct: 266 KLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNL-----TYLTL 316

Query: 588 TSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDL 647
             N   +   +  L                        ++ L F  NK+S      + +L
Sbjct: 317 YFNNISDISPVSSLTK----------------------LQRLFFYNNKVSD--VSSLANL 352

Query: 648 VGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNN 707
             +  L+   N ++  +TP +  L  +  L L+   +     +    +S  + +      
Sbjct: 353 TNINWLSAGHNQISD-LTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

Query: 708 LSGKIPL--GTQLQSFN 722
           L     +  G      +
Sbjct: 411 LIAPATISDGGSYTEPD 427

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  101 bits (255), Expect = 7e-23
 Identities = 92/543 (16%), Positives = 164/543 (30%), Gaps = 112/543 (20%)

Query: 178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN 237
           +      L + +++ ++         ++  L  D   ++   ++  + + +L  +    N
Sbjct: 24  AEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 78

Query: 238 ELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNS 297
           +L ++              L  + KL  + ++ N +  +   +  + L+NL  L L +N 
Sbjct: 79  QLTDI------------TPLKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQ 123

Query: 298 FTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDL 357
            T              I  L +                +  L++S   ISD        L
Sbjct: 124 IT-------------DIDPLKNLT-------------NLNRLELSSNTISD--ISALSGL 155

Query: 358 SHTIADFNLSNNHIK----GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNAS--VLN 411
           +  +   +  N          L  L          +DISSN     I  L    +   L 
Sbjct: 156 TS-LQQLSFGNQVTDLKPLANLTTL--------ERLDISSNKVSD-ISVLAKLTNLESLI 205

Query: 412 LSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIP 471
            + N+ S  I+ L  +    L+ L L+ N L             L  L LANN  S   P
Sbjct: 206 ATNNQIS-DITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 260

Query: 472 KSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVV 531
             +  L  +  L L  N +     S     + L  ++L +N L    P      L  L  
Sbjct: 261 --LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPI---SNLKNLTY 313

Query: 532 LSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNY 591
           L+L  N      P     L+ +Q L    N +S +    L N T +     + L+   N 
Sbjct: 314 LTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS--LANLTNI-----NWLSAGHNQ 364

Query: 592 TFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLV 651
             +   +  L                        +  L  +    +            + 
Sbjct: 365 ISDLTPLANLTR----------------------ITQLGLNDQAWTNAPVNY---KANVS 399

Query: 652 ALNLSRNNLTGQITPK-IDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSG 710
             N  +N     I P  I    S    D++ N             S+   +       SG
Sbjct: 400 IPNTVKNVTGALIAPATISDGGSYTEPDITWNL-PSYTNEVSYTFSQPVTIGKGTTTFSG 458

Query: 711 KIP 713
            + 
Sbjct: 459 TVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 99.3 bits (248), Expect = 5e-22
 Identities = 88/483 (18%), Positives = 158/483 (32%), Gaps = 98/483 (20%)

Query: 257 LSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIIL 316
            + + +     L   ++T  V+    ++L  +  L  D            I   + +   
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKS------IDGVEYL--- 67

Query: 317 LGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK---- 372
                            N +  ++ S+  ++D  P    +L+  + D  ++NN I     
Sbjct: 68  -----------------NNLTQINFSNNQLTDITP--LKNLTK-LVDILMNNNQIADITP 107

Query: 373 -GKLPNLSLRFDPFSSSIDISSNYFEGLIP-PLPSNASVLNLSRNKFSESISFLCSINGH 430
              L NL+         + + +N    + P    +N + L LS N  S  IS L  +   
Sbjct: 108 LANLTNLT--------GLTLFNNQITDIDPLKNLTNLNRLELSSNTIS-DISALSGLT-- 156

Query: 431 KLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSL 490
            L+ L   N +              L  L +++N  S      +  L ++++L   NN +
Sbjct: 157 SLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQI 211

Query: 491 IGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQL 550
                +     + L  + L  N L  +I T     L  L  L L +N+     P     L
Sbjct: 212 SD--ITPLGILTNLDELSLNGNQLK-DIGTL--ASLTNLTDLDLANNQISNLAPLS--GL 264

Query: 551 SYIQILDLSLNNISGIIP-KCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVV 609
           + +  L L  N IS I P   L   T        NL +  N   +   I  L++      
Sbjct: 265 TKLTELKLGANQISNISPLAGLTALT--------NLELNENQLEDISPISNLKN------ 310

Query: 610 LTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID 669
                           +  L    N +S   P  +  L  L  L    N ++      + 
Sbjct: 311 ----------------LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLA 350

Query: 670 QLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGN 729
            L ++++L    NQ     P  L  L+R++ + L+    +          S   +V    
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408

Query: 730 PEL 732
             L
Sbjct: 409 GAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 6e-10
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 31/200 (15%)

Query: 69  PSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKY 128
             L  L  L +L+L+EN          I +L  L YL+L         P  + +L++L+ 
Sbjct: 281 SPLAGLTALTNLELNENQLED---ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335

Query: 129 LDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFEN 188
           L      ++     +  +  L ++  L+  H  +  + P   L      + +  L L + 
Sbjct: 336 LFFYNNKVSD----VSSLANLTNINWLSAGHNQISDLTPLANL------TRITQLGLNDQ 385

Query: 189 SLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLG------------- 235
           + +++   +  N+S    V ++   L+            S     +              
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALI---APATISDGGSYTEPDITWNLPSYTNEVSYT 442

Query: 236 FNELEELFLGKNRLNGTINQ 255
           F++   +  G    +GT+ Q
Sbjct: 443 FSQPVTIGKGTTTFSGTVTQ 462

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  114 bits (287), Expect = 4e-27
 Identities = 90/519 (17%), Positives = 164/519 (31%), Gaps = 89/519 (17%)

Query: 67  ISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRL 126
           I+P  +    L+      ++ +   +P    ++        + +E+E   P   G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 127 KYLDLSYI------NLNKSRDWLRII-DKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSS 179
               L          L  +   L  + +  P L +L      L   +P     L     S
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSL-TELPELPQSL----KS 115

Query: 180 LGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE- 238
           L        +LS         +   L  L + +N L+   L        L+ + +  N  
Sbjct: 116 LLVDNNNLKALSD--------LPPLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSL 165

Query: 239 ---------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLK 289
                    LE +  G N+L       L  +  L A+    NSL       +     +L+
Sbjct: 166 KKLPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLK-----KLPDLPLSLE 218

Query: 290 ALHLDDNSFTLKFSHDWIPPF----QLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAG 345
           ++   +N          +P       L  I   +  +    P        +E L++ D  
Sbjct: 219 SIVAGNNILEE------LPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNY 268

Query: 346 ISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPS 405
           ++  +P+    L+  +       + +    PNL          ++ SSN    L   LP 
Sbjct: 269 LT-DLPELPQSLTF-LDVSENIFSGLSELPPNL--------YYLNASSNEIRSL-CDLPP 317

Query: 406 NASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF 465
           +   LN+S NK  E  +        +LE L  S N L+  +P+       L  L +  N 
Sbjct: 318 SLEELNVSNNKLIELPALPP-----RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNP 368

Query: 466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEG 525
              + P     +       L  NS + E+P   ++  QL    +  N L  E P      
Sbjct: 369 LR-EFPDIPESVE-----DLRMNSHLAEVPELPQNLKQL---HVETNPLR-EFPDIPE-- 416

Query: 526 LPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNIS 564
              +  L + S +      F       ++      ++  
Sbjct: 417 --SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.8 bits (231), Expect = 5e-20
 Identities = 91/526 (17%), Positives = 174/526 (33%), Gaps = 102/526 (19%)

Query: 203 SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELF---LGKNRLNGTINQWLSR 259
           + L      S+ L   +    + + S    Y  ++E E       G+ R           
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 260 MYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGS 319
             +   L L+   L+     S+     +L++L    NS  L    +     + +++   +
Sbjct: 70  DRQAHELELNNLGLS-----SLPELPPHLESLVASCNS--LTELPELPQSLKSLLVDNNN 122

Query: 320 CQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNL- 378
            +     P  L+       L +S+  +   +P+   + S  +   ++ NN +K KLP+L 
Sbjct: 123 LKALSDLPPLLEY------LGVSNNQLE-KLPE-LQNSSF-LKIIDVDNNSLK-KLPDLP 172

Query: 379 -SLRFDPFSSSIDISSNYFEGLIPPLP--SNASVLNLSRNKFSESISFLCSINGHKLEFL 435
            SL        I   +N  E L P L      + +    N   +      S     LE +
Sbjct: 173 PSLE------FIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKKLPDLPLS-----LESI 220

Query: 436 DLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELP 495
              NNIL   LP+       L  +   NN     +P     L   + L++ +N L  +LP
Sbjct: 221 VAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLT-DLP 273

Query: 496 SFFKSCSQLILMDLGKNGLSGEIP------------TWIGEGLPKLVVLSLKSNKFHGNI 543
              +S + L + +   +GLS   P              + +  P L  L++ +NK    +
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-EL 332

Query: 544 PFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLES 603
           P    +L   + L  S N+++ + P+   N           L +  N       +     
Sbjct: 333 PALPPRL---ERLIASFNHLAEV-PELPQNLK--------QLHVEYNP------LREFPD 374

Query: 604 YVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ 663
                                   + D  MN     +PE       L  L++  N L  +
Sbjct: 375 --------------------IPESVEDLRMNSHLAEVPELPQ---NLKQLHVETNPLR-E 410

Query: 664 ITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709
                + ++ L    ++  + V     +     +L      +++  
Sbjct: 411 FPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.7 bits (218), Expect = 2e-18
 Identities = 85/452 (18%), Positives = 152/452 (33%), Gaps = 105/452 (23%)

Query: 66  TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSR 125
            +      L  L   + +    S             L YL +S+ + E  +P  L N S 
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALS--------DLPPLLEYLGVSNNQLEK-LPE-LQNSSF 154

Query: 126 LKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYL 185
           LK +D+   +L       ++ D  PSL  +   +  L  +   +L +L      L A+Y 
Sbjct: 155 LKIIDVDNNSLK------KLPDLPPSLEFIAAGNNQLEEL--PELQNL----PFLTAIYA 202

Query: 186 FENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLG 245
             NSL       L ++   L  +   +N+L    L     +  L T+Y   N L+     
Sbjct: 203 DNNSLKK-----LPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK----- 250

Query: 246 KNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHD 305
                 T+         L+AL++  N LT      +     +L  L + +N F+      
Sbjct: 251 ------TLPDLPP---SLEALNVRDNYLT-----DLPELPQSLTFLDVSENIFS------ 290

Query: 306 WIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFN 365
                 L              P        +  L+ S   I  ++ D    L       N
Sbjct: 291 -----GL-----------SELPP------NLYYLNASSNEIR-SLCDLPPSLEE----LN 323

Query: 366 LSNNHIKGKLPNL--SLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISF 423
           +SNN +  +LP L   L        +  S N+   + P LP N   L++  N   E    
Sbjct: 324 VSNNKLI-ELPALPPRLE------RLIASFNHLAEV-PELPQNLKQLHVEYNPLREFPDI 375

Query: 424 LCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTL 483
             S     +E L +++++    +P+       L  L +  N    + P       S++ L
Sbjct: 376 PES-----VEDLRMNSHLAE--VPEL---PQNLKQLHVETNPLR-EFPDIPE---SVEDL 421

Query: 484 SLYNNSLIGELPSFFKSCSQLILMDLGKNGLS 515
            + +  ++       ++  +L       +   
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.9 bits (164), Expect = 8e-12
 Identities = 51/325 (15%), Positives = 102/325 (31%), Gaps = 66/325 (20%)

Query: 389 IDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPD 448
              + + +E   PP       + +SR         L      +   L+L+N  LS  LP+
Sbjct: 39  YYNAWSEWERNAPPGNGEQREMAVSR---------LRDCLDRQAHELELNNLGLS-SLPE 88

Query: 449 CWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMD 508
                  L  L  + N  + ++P+    L S+   +    +L    P        L  + 
Sbjct: 89  L---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLG 137

Query: 509 LGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIP 568
           +  N L  ++P    +    L ++ + +N     +P     L   + +    N +  +  
Sbjct: 138 VSNNQLE-KLPEL--QNSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQLEELPE 190

Query: 569 KCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKI 628
             L N   +     + +   +N       ++ L                        ++ 
Sbjct: 191 --LQNLPFL-----TAIYADNNS------LKKLPD------------------LPLSLES 219

Query: 629 LDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGI 688
           +    N L      E+ +L  L  +    N L   +      L++L+  D         +
Sbjct: 220 IVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD----L 272

Query: 689 PSSLCQLSRLSVMNLSYNNLSGKIP 713
           P     L+ L V    ++ LS   P
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 9e-09
 Identities = 49/297 (16%), Positives = 90/297 (30%), Gaps = 48/297 (16%)

Query: 432 LEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLI 491
           L+     ++ L+  +P              A + +    P   G    +    L +    
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-- 69

Query: 492 GELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLS 551
                      Q   ++L   GLS  +P    E  P L  L    N     +P     L 
Sbjct: 70  ---------DRQAHELELNNLGLS-SLP----ELPPHLESLVASCNSLT-ELPELPQSLK 114

Query: 552 YIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLES----YVDN 607
            + + + +L  +S + P                L +++N   +   ++         VDN
Sbjct: 115 SLLVDNNNLKALSDLPP------------LLEYLGVSNNQLEKLPELQNSSFLKIIDVDN 162

Query: 608 VVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPK 667
             L       +       ++ +    N+L   +PE + +L  L A+    N     +   
Sbjct: 163 NSLK------KLPDLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNN----SLKKL 210

Query: 668 IDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNAS 724
            D   SL+ +    N         L  L  L+ +    N L     L   L++ N  
Sbjct: 211 PDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVR 265

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 38/250 (15%)

Query: 477 LHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS 536
              +Q    ++++L  E+P   ++           +      P   GE   ++ V  L+ 
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRLRD 67

Query: 537 NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQ 596
                      C       L+L+   +S  +P+   +          +L  + N      
Sbjct: 68  -----------CLDRQAHELELNNLGLS-SLPELPPHLE--------SLVASCNS----- 102

Query: 597 GIEFLESYVDN-VVLTWKGSQHEYRSTL-GLVKILDFSMNKLSGTIPEEIMDLVGLVALN 654
            +  L     +   L    +  +  S L  L++ L  S N+L   +PE + +   L  ++
Sbjct: 103 -LTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIID 159

Query: 655 LSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714
           +  N+L     P  D   SL+F+    NQ        L  L  L+ +    N+L     L
Sbjct: 160 VDNNSLK--KLP--DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDL 213

Query: 715 GTQLQSFNAS 724
              L+S  A 
Sbjct: 214 PLSLESIVAG 223

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  114 bits (286), Expect = 5e-27
 Identities = 72/402 (17%), Positives = 134/402 (33%), Gaps = 34/402 (8%)

Query: 150 PSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLD 209
             +  ++L    +  +  +    L      L  L + + +    I    F   S L++L 
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRL----QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85

Query: 210 LDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLS 269
           LD N         F+ + +L  L L    L+   L  N        +   +  L+ L L 
Sbjct: 86  LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN--------FFKPLTSLEMLVLR 137

Query: 270 GNSLTGVVTESVFSELSNLKALHLDDNSFT----------LKFSHDWIPPFQLIIILLGS 319
            N++  +   S F  +     L L  N                    +    + +  +  
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 320 CQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLS 379
             +G            I  LD+S  G  +++   F+D        +L  ++      +  
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF- 256

Query: 380 LRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSN 439
                 ++  D  +  F+GL     S     +LS++K   ++      +   LE L L+ 
Sbjct: 257 ----GHTNFKDPDNFTFKGLEA---SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQ 308

Query: 440 NILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPS-FF 498
           N ++    + +     L  L+L+ NF      +    L  ++ L L  N  I  L    F
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSF 367

Query: 499 KSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH 540
                L  + L  N L   +P  I + L  L  + L +N + 
Sbjct: 368 LGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 86/421 (20%), Positives = 140/421 (33%), Gaps = 50/421 (11%)

Query: 76  HLRHLDLSENDFSGSRIPE-FIGSLNKLRYLSLSSAEFEGPIPSQL-GNLSRLKYLDLSY 133
           H+ ++DLS N  +   + E     L  L++L +        I +     LS L  L L Y
Sbjct: 31  HVNYVDLSLNSIA--ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 134 INLNKSRDWLRIIDKLPSLRTLNLEHCHLP-PIIPSDLLHLNFSTSSLGALYLFENSLSS 192
               +        + L +L  L L  C+L   ++  +        +SL  L L +N++  
Sbjct: 89  NQFLQLET--GAFNGLANLEVLTLTQCNLDGAVLSGNFFK---PLTSLEMLVLRDNNIKK 143

Query: 193 SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGT 252
                 F    +  VLDL  N ++    E            L  + +    + +  L   
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203

Query: 253 INQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQL 312
                 +   +  L LSGN     + +  F  ++  K   L  ++     S      F+ 
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 313 IIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK 372
                       +F       + ++  D+S + I   +   F   +       L+ N I 
Sbjct: 264 P----------DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL-EQLTLAQNEIN 312

Query: 373 GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKL 432
                             I  N F GL     ++   LNLS+N      S +   N  KL
Sbjct: 313 -----------------KIDDNAFWGL-----THLLKLNLSQNFLGSIDSRMFE-NLDKL 349

Query: 433 EFLDLSNNILSGRLPDCWMQFD---RLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNS 489
           E LDLS N +   L D    F     L  L+L  N            L S+Q + L+ N 
Sbjct: 350 EVLDLSYNHIR-ALGDQ--SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

Query: 490 L 490
            
Sbjct: 407 W 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 90.2 bits (224), Expect = 3e-19
 Identities = 76/373 (20%), Positives = 135/373 (36%), Gaps = 50/373 (13%)

Query: 400 IPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLA-- 457
           +P LP++ + ++LS N  +  ++         L+FL +        + +    F  L+  
Sbjct: 25  VPELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRN--NTFRGLSSL 81

Query: 458 -VLSLANNFFSGKIPKSM-GFLHSIQTLSLYNNSLIGEL--PSFFKSCSQLILMDLGKNG 513
            +L L  N F  ++       L +++ L+L   +L G +   +FFK  + L ++ L  N 
Sbjct: 82  IILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 514 LSGEIPTWIGEGLPKLVVLSLKSNKFH----------GNIPFQVCQLSYIQILDLSLNNI 563
           +    P      + +  VL L  NK                F + +LS I + D++   +
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 564 SGIIPKCLNNFTGMAQKSSSNLAITS----NYTFERQGIEFLESYVDNVVLTWKGSQHEY 619
                      T +     S           +     G +     + N         H  
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 620 RSTL------GL----VKILDFSMNKLSGTIPEEIMD-LVGLVALNLSRNNLTGQITPKI 668
                     GL    VK  D S +K+   + + +      L  L L++N +  +I    
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNA 318

Query: 669 -DQLKSLDFLDLSQNQFVGGIPSSLCQ-LSRLSVMNLSYNNLSGKIPLGTQLQSFNASVY 726
              L  L  L+LSQN   G I S + + L +L V++LSYN           +++     +
Sbjct: 319 FWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYN----------HIRALGDQSF 367

Query: 727 AGNPELCGLPLRN 739
            G P L  L L  
Sbjct: 368 LGLPNLKELALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 47/242 (19%), Positives = 83/242 (34%), Gaps = 21/242 (8%)

Query: 73  KLYHLRHLDLSENDFSGSRIPEFI-GSLNKLRYLSLSSAEFEGPI--PSQLGNLSRLKYL 129
            L  L  L L  N F   ++       L  L  L+L+    +G +   +    L+ L+ L
Sbjct: 77  GLSSLIILKLDYNQF--LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134

Query: 130 DLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENS 189
            L   N+ K          +     L+L    +   I  + L LNF       L L   +
Sbjct: 135 VLRDNNI-KKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDL-LNFQGKHFTLLRLSSIT 191

Query: 190 LSS-------SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVS---LRTLYLGFNEL 239
           L                  ++ +  LDL  N  + S+ + F   ++   +++L L  +  
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 240 EELFLGKNRLNGTINQWLSRMY--KLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNS 297
                G        N     +    +    LS + +   + +SVFS  ++L+ L L  N 
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE 310

Query: 298 FT 299
             
Sbjct: 311 IN 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 87/514 (16%), Positives = 154/514 (29%), Gaps = 138/514 (26%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSR 259
            + + +  +DL  N +       F R+  L+ L +       L +  N   G  +     
Sbjct: 27  ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-LVIRNNTFRGLSS----- 80

Query: 260 MYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGS 319
              L  L L  N     +    F+ L+NL+ L L                          
Sbjct: 81  ---LIILKLDYNQFL-QLETGAFNGLANLEVLTLT------------------------- 111

Query: 320 CQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLS 379
                        Q  ++   +S         ++F  L+  +    L +N+IK       
Sbjct: 112 -------------QCNLDGAVLS--------GNFFKPLTS-LEMLVLRDNNIK------K 143

Query: 380 LRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKF-SESISFLCSINGHKLEFLDLS 438
           ++   F          F  +         VL+L+ NK  S     L +  G     L LS
Sbjct: 144 IQPASF----------FLNM-----RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188

Query: 439 NNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPS-F 497
           +  L                  +   +   +   +     SI TL L  N     +   F
Sbjct: 189 SITL----------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232

Query: 498 FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILD 557
           F + +   +  L  +         +G            +  F G       + S ++  D
Sbjct: 233 FDAIAGTKIQSLILS-----NSYNMGSSFGHTNFKDPDNFTFKG------LEASGVKTCD 281

Query: 558 LSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYV-DNVVLTWKGSQ 616
           LS + I  ++    ++FT + Q     L +  N       I  ++               
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQ-----LTLAQN------EINKIDDNAFWG--------- 321

Query: 617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMD-LVGLVALNLSRNNLTGQITPKI-DQLKSL 674
                 L  +  L+ S N L  +I   + + L  L  L+LS N++   +  +    L +L
Sbjct: 322 ------LTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNL 373

Query: 675 DFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNL 708
             L L  NQ          +L+ L  + L  N  
Sbjct: 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (278), Expect = 2e-26
 Identities = 76/395 (19%), Positives = 145/395 (36%), Gaps = 67/395 (16%)

Query: 339 LDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK-----GKLPNLSLRFDPFSSSIDISS 393
           L    A I+   PD   DL+  I    L    +       +L +++         + ++ 
Sbjct: 5   LATLPAPINQIFPDA--DLAEGI-RAVLQKASVTDVVTQEELESIT--------KLVVAG 53

Query: 394 NYFEGLIPPL--PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWM 451
                 I  +   +N   LNL+ N+ ++        N  KL  L +  N ++        
Sbjct: 54  EKVAS-IQGIEYLTNLEYLNLNGNQITDISPLS---NLVKLTNLYIGTNKITD--ISALQ 107

Query: 452 QFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGK 511
               L  L L  +  S   P  +  L  + +L+L  N  +    S   + + L  + + +
Sbjct: 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTE 164

Query: 512 NGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCL 571
           + +    P      L  L  LSL  N+     P     L+ +      +N I+ I P  +
Sbjct: 165 SKVKDVTPI---ANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--V 217

Query: 572 NNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDF 631
            N T +     ++L I +N       +  L +                   L  +  L+ 
Sbjct: 218 ANMTRL-----NSLKIGNNKI---TDLSPLAN-------------------LSQLTWLEI 250

Query: 632 SMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSS 691
             N++S      + DL  L  LN+  N ++  I+  ++ L  L+ L L+ NQ        
Sbjct: 251 GTNQISD--INAVKDLTKLKMLNVGSNQISD-ISV-LNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 692 LCQLSRLSVMNLSYNNLSGKIPLG--TQLQSFNAS 724
           +  L+ L+ + LS N+++   PL   +++ S + +
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (268), Expect = 4e-25
 Identities = 64/334 (19%), Positives = 127/334 (38%), Gaps = 54/334 (16%)

Query: 66  TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSR 125
           T   +  +L  +  L ++    +     + I  L  L YL+L+  +     P  L NL +
Sbjct: 35  TDVVTQEELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQITDISP--LSNLVK 89

Query: 126 LKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYL 185
           L  L +    +      +  +  L +LR L L   ++  I P   L      + + +L L
Sbjct: 90  LTNLYIGTNKITD----ISALQNLTNLRELYLNEDNISDISPLANL------TKMYSLNL 139

Query: 186 FENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE------- 238
             N   S +   L N+ + L  L +  + ++   + P   +  L +L L +N+       
Sbjct: 140 GANHNLSDL-SPLSNM-TGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISPL 195

Query: 239 -----LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHL 293
                L       N++       ++ M +L++L +  N +T +   S  + LS L  L +
Sbjct: 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL---SPLANLSQLTWLEI 250

Query: 294 DDNSFTLKFSHDWIPPF----QLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDT 349
             N  +       I       +L ++ +GS Q+       L   +Q+  L +++  + + 
Sbjct: 251 GTNQISD------INAVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNE 302

Query: 350 VPDWFWDLSHTIADFNLSNNHIK-----GKLPNL 378
             +    L++ +    LS NHI        L  +
Sbjct: 303 DMEVIGGLTN-LTTLFLSQNHITDIRPLASLSKM 335

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (255), Expect = 2e-23
 Identities = 72/429 (16%), Positives = 138/429 (32%), Gaps = 100/429 (23%)

Query: 77  LRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINL 136
              L       +          L +     L  A     +      L  +  L ++   +
Sbjct: 2   AATLATLPAPINQI---FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 137 NKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYP 196
                 ++ I+ L +L  LNL    +  I P   L        L  LY+  N ++     
Sbjct: 57  AS----IQGIEYLTNLEYLNLNGNQITDISPLSNL------VKLTNLYIGTNKITD--IS 104

Query: 197 WLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE-------------LEELF 243
            L N+++ L  L L+ + +    + P   +  + +L LG N              L  L 
Sbjct: 105 ALQNLTN-LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT 161

Query: 244 LGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFS 303
           + ++++       ++ +  L +LSL+ N +  +   S  + L++L       N  T    
Sbjct: 162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQIT---- 212

Query: 304 HDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIAD 363
                     I  + +               ++  L I +  I+D  P            
Sbjct: 213 ---------DITPVANMT-------------RLNSLKIGNNKITDLSPL----------- 239

Query: 364 FNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNAS--VLNLSRNKFSESI 421
                      L  L        + ++I +N     I  +       +LN+  N+ S  I
Sbjct: 240 ---------ANLSQL--------TWLEIGTNQISD-INAVKDLTKLKMLNVGSNQIS-DI 280

Query: 422 SFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQ 481
           S L +++  +L  L L+NN L     +       L  L L+ N  +   P  +  L  + 
Sbjct: 281 SVLNNLS--QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336

Query: 482 TLSLYNNSL 490
           +    N  +
Sbjct: 337 SADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.0 bits (245), Expect = 3e-22
 Identities = 72/406 (17%), Positives = 141/406 (34%), Gaps = 82/406 (20%)

Query: 180 LGALYLFENSLSSSIYPWLFNIS--SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN 237
              L      ++      +F  +  ++ +   L    +    +   + + S+  L +   
Sbjct: 2   AATLATLPAPINQ-----IFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGE 54

Query: 238 E------------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSEL 285
           +            LE L L  N++       LS + KL  L +  N +T +   S    L
Sbjct: 55  KVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI---SALQNL 109

Query: 286 SNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAG 345
           +NL+ L+L++++ +       I P                    L    ++  L++    
Sbjct: 110 TNLRELYLNEDNISD------ISP--------------------LANLTKMYSLNLGANH 143

Query: 346 ISDTVPDWFWDLSHTIADFNLSNNHIK-----GKLPNLSLRFDPFSSSIDISSNYFEGLI 400
              +      +++  +    ++ + +K       L +L         S+ ++ N  E  I
Sbjct: 144 NL-SDLSPLSNMTG-LNYLTVTESKVKDVTPIANLTDLY--------SLSLNYNQIED-I 192

Query: 401 PPLPSNAS--VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAV 458
            PL S  S        N+ +  I+ + ++   +L  L + NN ++           +L  
Sbjct: 193 SPLASLTSLHYFTAYVNQIT-DITPVANMT--RLNSLKIGNNKITD--LSPLANLSQLTW 247

Query: 459 LSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEI 518
           L +  N  S     ++  L  ++ L++ +N +     S   + SQL  + L  N L  E 
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 519 PTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNIS 564
              IG GL  L  L L  N      P     LS +   D +   I 
Sbjct: 304 MEVIG-GLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.8 bits (234), Expect = 8e-21
 Identities = 60/310 (19%), Positives = 113/310 (36%), Gaps = 51/310 (16%)

Query: 69  PSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKY 128
             L  L  L +L +  N  +       + +L  LR L L+        P  L NL+++  
Sbjct: 82  SPLSNLVKLTNLYIGTNKIT---DISALQNLTNLRELYLNEDNISDISP--LANLTKMYS 136

Query: 129 LDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFEN 188
           L+L     N +   L  +  +  L  L +    +  + P   L      + L +L L  N
Sbjct: 137 LNLGA---NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANL------TDLYSLSLNYN 187

Query: 189 SLSSSIYPWLFNIS--SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGK 246
            +          ++  + L       N +    + P   M  L +L +G N++ +L    
Sbjct: 188 QIEDIS-----PLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDL---- 236

Query: 247 NRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDW 306
                     L+ + +L  L +  N ++ +   +   +L+ LK L++  N  +       
Sbjct: 237 --------SPLANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQIS------D 279

Query: 307 IPPF----QLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIA 362
           I       QL  + L + Q+G    + +     +  L +S   I+D  P     LS  + 
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK-MD 336

Query: 363 DFNLSNNHIK 372
             + +N  IK
Sbjct: 337 SADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 87.2 bits (217), Expect = 1e-18
 Identities = 59/348 (16%), Positives = 121/348 (34%), Gaps = 63/348 (18%)

Query: 235 GFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLD 294
              E     L K  +   +      +  +  L ++G  +  +        L+NL+ L+L+
Sbjct: 20  DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI---QGIEYLTNLEYLNLN 74

Query: 295 DNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWF 354
            N  T       I P   +                     ++  L I    I+D      
Sbjct: 75  GNQITD------ISPLSNL--------------------VKLTNLYIGTNKITD--ISAL 106

Query: 355 WDLSHTIADFNLSNNHIK-----GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNAS- 408
            +L++ + +  L+ ++I        L  +         S+++ +N+    + PL +    
Sbjct: 107 QNLTN-LRELYLNEDNISDISPLANLTKMY--------SLNLGANHNLSDLSPLSNMTGL 157

Query: 409 -VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFS 467
             L ++ +K  +        N   L  L L+ N +   +         L   +   N  +
Sbjct: 158 NYLTVTESKVKDVTPI---ANLTDLYSLSLNYNQIED-ISPLA-SLTSLHYFTAYVNQIT 212

Query: 468 GKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLP 527
              P  +  +  + +L + NN +     S   + SQL  +++G N +S  I     + L 
Sbjct: 213 DITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD-INAV--KDLT 265

Query: 528 KLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFT 575
           KL +L++ SN+           LS +  L L+ N +     + +   T
Sbjct: 266 KLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLT 311

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.2 bits (204), Expect = 5e-17
 Identities = 42/341 (12%), Positives = 105/341 (30%), Gaps = 73/341 (21%)

Query: 387 SSIDISSNYFEGLIP-PLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGR 445
           +++         + P    +      L +   ++ ++         +  L ++   ++  
Sbjct: 3   ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKVASI 59

Query: 446 LPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLI 505
                     L  L+L  N  +   P  +  L  +  L +  N +     S  ++ + L 
Sbjct: 60  QGIE--YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLR 113

Query: 506 LMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISG 565
            + L ++ +S   P      L K+  L+L +N    ++   +  ++ +  L ++ + +  
Sbjct: 114 ELYLNEDNISDISPL---ANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD 169

Query: 566 IIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGL 625
           +          +     ++L                                        
Sbjct: 170 VT-----PIANL-----TDL---------------------------------------- 179

Query: 626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFV 685
              L  + N++       +  L  L       N +T      +  +  L+ L +  N+  
Sbjct: 180 -YSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKIT 234

Query: 686 GGIPSSLCQLSRLSVMNLSYNNLSGKIPLG--TQLQSFNAS 724
               S L  LS+L+ + +  N +S    +   T+L+  N  
Sbjct: 235 D--LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG 273

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.2 bits (178), Expect = 1e-13
 Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 69  PSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKY 128
             L  L  L +     N  +       + ++ +L  L + + +     P  L NLS+L +
Sbjct: 193 SPLASLTSLHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKITDLSP--LANLSQLTW 247

Query: 129 LDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFEN 188
           L++    ++     +  +  L  L+ LN+    +  I  S L +L    S L +L+L  N
Sbjct: 248 LEIGTNQISD----INAVKDLTKLKMLNVGSNQISDI--SVLNNL----SQLNSLFLNNN 297

Query: 189 SLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEE 241
            L +     +  ++  L  L L  N +    + P   +  + +       +++
Sbjct: 298 QLGNEDMEVIGGLT-NLTTLFLSQNHITD--IRPLASLSKMDSADFANQVIKK 347

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  109 bits (273), Expect = 5e-25
 Identities = 87/539 (16%), Positives = 166/539 (30%), Gaps = 93/539 (17%)

Query: 166 IPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDR 225
           +P DL      +     L + +N +S  ++       SKL +L +  N +Q   +  F  
Sbjct: 15  VPKDL------SQKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKF 67

Query: 226 MVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSEL 285
              L  L L  N+L ++                    L  L LS N+   +     F  +
Sbjct: 68  NQELEYLDLSHNKLVKISCHP-------------TVNLKHLDLSFNAFDALPICKEFGNM 114

Query: 286 SNLKALHLDDNSFT-LKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQ-----TQNQIEVL 339
           S LK L L                    ++++LG        P+ LQ     + + +   
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 340 DISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLR------FDPFSSSIDISS 393
           +     I D       +L  +     L +N     L  L+         +   ++I+ + 
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 394 NYFEGLIPPL-PSNASVLNLSRNKFSESISFLCSINGH----KLEFLDLSNNILSGRLPD 448
           N F  ++  +  +     ++S  K    + F            L    + +++       
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 449 CWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMD 508
            +  F  + + +   +            +     L   NN L   +       ++L  + 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 509 LGKNGLSGEIPTWIG--EGLPKLVVLSLKSNKFHGNIPFQVC-QLSYIQILDLSLNNISG 565
           L  N L  E+         +  L  L +  N    +     C     +  L++S N ++ 
Sbjct: 355 LQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 566 IIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGL 625
            I +CL                                                      
Sbjct: 414 TIFRCL---------------------------------------------------PPR 422

Query: 626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQF 684
           +K+LD   NK+  +IP++++ L  L  LN++ N L        D+L SL  + L  N +
Sbjct: 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  102 bits (256), Expect = 6e-23
 Identities = 77/446 (17%), Positives = 140/446 (31%), Gaps = 33/446 (7%)

Query: 124 SRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGAL 183
            +   L++S   +++       I  L  LR L + H  +  +  S           L  L
Sbjct: 21  QKTTILNISQNYISELWT--SDILSLSKLRILIISHNRIQYLDISVFKFN----QELEYL 74

Query: 184 YLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG-SLLEPFDRMVSLRTLYLGFNELEEL 242
            L  N L              L  LDL  N      + + F  M  L+ L L    LE+ 
Sbjct: 75  DLSHNKLVKISCHPT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 243 FLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKF 302
            +            L               L    TES+       K  H   +  ++K 
Sbjct: 131 SVLPIAHLNISKVLLVLGETY-GEKEDPEGLQDFNTESLHIVFPTNKEFHFILD-VSVKT 188

Query: 303 SHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIA 362
             +        ++    C         LQT  ++  L +++   +      F  +   + 
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS---FIRILQLVW 245

Query: 363 DFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESIS 422
              +    I     N+ L+        D S    + L        S+  +  + F    S
Sbjct: 246 HTTVWYFSIS----NVKLQGQLDFRDFDYSGTSLKAL--------SIHQVVSDVFGFPQS 293

Query: 423 FLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQT 482
           ++       +   + + +        C  +      L  +NN  +  + ++ G L  ++T
Sbjct: 294 YIYE-IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 483 LSLYNNSL--IGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH 540
           L L  N L  + ++         L  +D+ +N +S +           L+ L++ SN   
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 541 GNIPFQVCQLSYIQILDLSLNNISGI 566
             I    C    I++LDL  N I  I
Sbjct: 413 DTIFR--CLPPRIKVLDLHSNKIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 99.6 bits (248), Expect = 5e-22
 Identities = 73/429 (17%), Positives = 152/429 (35%), Gaps = 47/429 (10%)

Query: 73  KLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLS 132
              +L+HLDLS N F    I +  G++++L++L LS+   E      + +L+  K L + 
Sbjct: 88  PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147

Query: 133 YINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS 192
                +  D     + L    T +L            +L ++  T +   L   +  L  
Sbjct: 148 GETYGEKED----PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 193 SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLY----LGFNELEELFLGKNR 248
           +   +  +I +KL      SNL   ++   ++  + +  L     + +  +  + L    
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263

Query: 249 LNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIP 308
                +   + +  L    +  +         ++   SN+   +   +   +        
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 309 PFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSN 368
                                         LD S+  ++DTV +    L+       L  
Sbjct: 323 ISPF------------------------LHLDFSNNLLTDTVFENCGHLTEL-ETLILQM 357

Query: 369 NHIKGKLPNLSLRFDPFSS--SIDISSNYFEGLIPP----LPSNASVLNLSRNKFSESIS 422
           N +K +L  ++       S   +DIS N               +   LN+S N  +++I 
Sbjct: 358 NQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

Query: 423 FLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSM-GFLHSIQ 481
                   +++ LDL +N +   +P   ++ + L  L++A+N     +P  +   L S+Q
Sbjct: 417 RCLP---PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471

Query: 482 TLSLYNNSL 490
            + L+ N  
Sbjct: 472 KIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.4 bits (232), Expect = 5e-20
 Identities = 94/504 (18%), Positives = 171/504 (33%), Gaps = 61/504 (12%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN 135
               L++S+N  S       I SL+KLR L +S    +    S       L+YLDLS+  
Sbjct: 22  KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 136 LNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIY 195
           L K            +L+ L+L       +          + S L  L L    L  S  
Sbjct: 81  LVKI-----SCHPTVNLKHLDLSFNAFDALPICKEFG---NMSQLKFLGLSTTHLEKSSV 132

Query: 196 PWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQ 255
             + +++   V+L L     +    E                 L  +F      +  ++ 
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQD--------FNTESLHIVFPTNKEFHFILDV 184

Query: 256 WLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIII 315
            +  +  L+  ++    L         S L+ L+      N         W    +++ +
Sbjct: 185 SVKTVANLELSNIKCV-LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

Query: 316 LLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKL 375
           +  +                +    IS+  +   +            DF+ S   +K  L
Sbjct: 244 VWHT---------------TVWYFSISNVKLQGQLD---------FRDFDYSGTSLK-AL 278

Query: 376 PNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFL 435
               +  D F          F        SN ++ N + +  +  +  LC         L
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIF--------SNMNIKNFTVSG-TRMVHMLCPSKISPFLHL 329

Query: 436 DLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGF---LHSIQTLSLYNNSLIG 492
           D SNN+L+  + +       L  L L  N    ++ K       + S+Q L +  NS+  
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 493 ELPS-FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLS 551
           +           L+ +++  N L+  I   +    P++ VL L SNK   +IP QV +L 
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK-SIPKQVVKLE 444

Query: 552 YIQILDLSLNNISGIIPKCLNNFT 575
            +Q L+++ N +  +     +  T
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLT 468

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 79/528 (14%), Positives = 159/528 (30%), Gaps = 106/528 (20%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSR 259
           ++S K  +L++  N +          +  LR L +  N ++ L +               
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS----------VFKF 67

Query: 260 MYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGS 319
             +L+ L LS N L  +          NLK L L  N+F                    +
Sbjct: 68  NQELEYLDLSHNKLVKIS----CHPTVNLKHLDLSFNAFD-------------------A 104

Query: 320 CQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLS 379
             +   F       +Q++ L +S   +  +       L+ +     L   + +       
Sbjct: 105 LPICKEFGNM----SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK----ED 156

Query: 380 LRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSN 439
                  ++  +   +          + SV  ++  + S  I  +   N        L+ 
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN-IKCVLEDNKCSYFLSILAK 215

Query: 440 NILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFK 499
                   +  +    L  +    N F       + +  ++   S+ N  L G+L     
Sbjct: 216 L-----QTNPKLSNLTLNNIETTWNSFIR--ILQLVWHTTVWYFSISNVKLQGQLDF--- 265

Query: 500 SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLS 559
                                + G  L  L +  + S+ F     +     S + I + +
Sbjct: 266 -----------------RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 560 LNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEY 619
           ++    +   C +  +       SN  +T                       ++   H  
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTD--------------------TVFENCGH-- 346

Query: 620 RSTLGLVKILDFSMNKLSGTIPEEI---MDLVGLVALNLSRNNLTGQITPKI-DQLKSLD 675
              L  ++ L   MN+L   + +       +  L  L++S+N+++           KSL 
Sbjct: 347 ---LTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402

Query: 676 FLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG----TQLQ 719
            L++S N     I   L    R+ V++L  N +   IP        LQ
Sbjct: 403 SLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQ 447

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 49/353 (13%), Positives = 129/353 (36%), Gaps = 30/353 (8%)

Query: 57  LVHSEPLKGTISPSLLKLYHLRHLDL--SENDFSGSRIPEFIGSLNKLRYLSLSSAEFEG 114
           LV  E       P  L+ ++   L +    N      +   + ++  L   ++     + 
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

Query: 115 PIPSQLGNLSRLKY----LDLSYINLNKSRDWLRIIDKLP---SLRTLNLEHCHLPPIIP 167
                L  L++L+      +L+  N+  + +    I +L    ++   ++ +  L   + 
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264

Query: 168 SDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMV 227
                 + ++    +++   + +      +++ I S + + +   +  +   +    ++ 
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324

Query: 228 SLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGV-VTESVFSELS 286
               L    N L +                  + +L+ L L  N L  +     + +++ 
Sbjct: 325 PFLHLDFSNNLLTDTVFEN----------CGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 287 NLKALHLDDNSFTLKFSHD-WIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAG 345
           +L+ L +  NS +             L+ + + S  +     + L    +I+VLD+    
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNK 432

Query: 346 ISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS--SIDISSNYF 396
           I  ++P     L   + + N+++N +K  +P+    FD  +S   I + +N +
Sbjct: 433 IK-SIPKQVVKLEA-LQELNVASNQLK-SVPDGI--FDRLTSLQKIWLHTNPW 480

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (264), Expect = 5e-24
 Identities = 70/383 (18%), Positives = 139/383 (36%), Gaps = 77/383 (20%)

Query: 161 HLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLL 220
            +P  IP++   L+          L +N + + +    F     L  L+L+ N++  S +
Sbjct: 25  AVPEGIPTETRLLD----------LGKNRIKT-LNQDEFASFPHLEELELNENIV--SAV 71

Query: 221 EP--FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVT 278
           EP  F+ + +LRTL L  N L+ + LG            + +  L  L +S N +  ++ 
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGV----------FTGLSNLTKLDISENKIV-ILL 120

Query: 279 ESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEV 338
           + +F +L NLK+L + DN         +I                    +     N +E 
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV------YISH------------------RAFSGLNSLEQ 156

Query: 339 LDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEG 398
           L +    ++    +    L   +    L + +I                   I    F+ 
Sbjct: 157 LTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNIN-----------------AIRDYSFKR 198

Query: 399 LIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAV 458
           L         VL +S   + ++++    + G  L  L +++  L+            L  
Sbjct: 199 L-----YRLKVLEISHWPYLDTMTP-NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252

Query: 459 LSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF-FKSCSQLILMDLGKNGLSGE 517
           L+L+ N  S      +  L  +Q + L     +  +  + F+  + L ++++  N L+  
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLT-T 310

Query: 518 IPTWIGEGLPKLVVLSLKSNKFH 540
           +   +   +  L  L L SN   
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.8 bits (249), Expect = 4e-22
 Identities = 76/375 (20%), Positives = 134/375 (35%), Gaps = 73/375 (19%)

Query: 383 DPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNIL 442
                ++      F  +   +P+   +L+L +N+   +++     +   LE L+L+ NI+
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV 68

Query: 443 SGRLPDCWMQFDRLAVLSLANNFFSGKIPKSM-GFLHSIQTLSLYNNSLIGELPSFFKSC 501
           S   P  +     L  L L +N     IP  +   L ++  L +  N ++  L   F+  
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 502 SQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQV-CQLSYIQILDLSL 560
             L  +++G N L   I      GL  L  L+L+      +IP +    L  + +L L  
Sbjct: 128 YNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

Query: 561 NNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYR 620
            NI+ I                       +Y+F+R                         
Sbjct: 186 LNINAI----------------------RDYSFKR------------------------- 198

Query: 621 STLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPK-IDQLKSLDFLDL 679
             L  +K+L+ S      T+    +  + L +L+++  NLT  +    +  L  L FL+L
Sbjct: 199 --LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNL 255

Query: 680 SQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT---------------QLQSFNAS 724
           S N       S L +L RL  + L    L+  +                   QL +   S
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEES 314

Query: 725 VYAGNPELCGLPLRN 739
           V+     L  L L +
Sbjct: 315 VFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.0 bits (247), Expect = 6e-22
 Identities = 68/368 (18%), Positives = 125/368 (33%), Gaps = 73/368 (19%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN 135
             R LDL +N          I +LN                  +  +   L+ L+L+   
Sbjct: 33  ETRLLDLGKN---------RIKTLN----------------QDEFASFPHLEELELNENI 67

Query: 136 LNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIY 195
           ++         + L +LRTL L    L  +IP  +       S+L  L + EN +   + 
Sbjct: 68  VSAVEP--GAFNNLFNLRTLGLRSNRL-KLIPLGVFT---GLSNLTKLDISENKI-VILL 120

Query: 196 PWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGKNRLNGTI 253
            ++F     L  L++  N L    +    F  + SL  L L    L  +           
Sbjct: 121 DYMFQDLYNLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKCNLTSI----------P 168

Query: 254 NQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLI 313
            + LS ++ L  L L   ++   + +  F  L  LK L +    +    + + +    L 
Sbjct: 169 TEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 314 IILLGSCQMGPHFPKW-LQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK 372
            + +  C +    P   ++    +  L++S   IS        +L   + +  L    + 
Sbjct: 228 SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR-LQEIQLVGGQLA 285

Query: 373 GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKL 432
                             +    F GL     +   VLN+S N+ + ++      +   L
Sbjct: 286 -----------------VVEPYAFRGL-----NYLRVLNVSGNQLT-TLEESVFHSVGNL 322

Query: 433 EFLDLSNN 440
           E L L +N
Sbjct: 323 ETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 53/246 (21%), Positives = 85/246 (34%), Gaps = 27/246 (10%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPEFI-GSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKY 128
                 HL  L+L+EN    S +      +L  LR L L S   +         LS L  
Sbjct: 51  EFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108

Query: 129 LDLSYINLNK-SRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFE 187
           LD+S   +        +    L +L++L +    L  I       L    +SL  L L +
Sbjct: 109 LDISENKIVILLDYMFQ---DLYNLKSLEVGDNDLVYISHRAFSGL----NSLEQLTLEK 161

Query: 188 NSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE--------- 238
            +L +SI     +    L+VL L    +       F R+  L+ L +             
Sbjct: 162 CNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 239 -----LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHL 293
                L  L +    L       +  +  L  L+LS N ++  +  S+  EL  L+ + L
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQL 279

Query: 294 DDNSFT 299
                 
Sbjct: 280 VGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.0 bits (221), Expect = 9e-19
 Identities = 57/356 (16%), Positives = 109/356 (30%), Gaps = 62/356 (17%)

Query: 336 IEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNY 395
             +LD+    I     D F    H + +  L+ N +                   +    
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPH-LEELELNENIVS-----------------AVEPGA 75

Query: 396 FEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDR 455
           F  L      N   L L  N+    I          L  LD+S N +   L   +     
Sbjct: 76  FNNL-----FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 456 LAVLSLANNFFSGKIPKSMGF--LHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNG 513
           L  L + +N     I     F  L+S++ L+L   +L             LI++ L    
Sbjct: 130 LKSLEVGDNDLV-YISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 514 LSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNN 573
           ++  I  +  + L +L VL +    +   +         +  L ++  N++ +    + +
Sbjct: 188 IN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 574 FTGMAQKSSSNLAITS--NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDF 631
              +   + S   I++          +  L+                          +  
Sbjct: 247 LVYLRFLNLSYNPISTIEGSML--HELLRLQE-------------------------IQL 279

Query: 632 SMNKLSGTIPEEIM-DLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQFV 685
              +L+  +       L  L  LN+S N LT  +   +   + +L+ L L  N   
Sbjct: 280 VGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 48/313 (15%), Positives = 91/313 (29%), Gaps = 56/313 (17%)

Query: 266 LSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPH 325
           L L  N +   + +  F+   +L+ L L++N  +       + P                
Sbjct: 37  LDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA------VEP---------------- 73

Query: 326 FPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPF 385
                     +  L +    +       F  LS+ +   ++S N I              
Sbjct: 74  --GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN-LTKLDISENKIV------------- 117

Query: 386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGR 445
                +    F+ L      N   L +  N     IS       + LE L L    L+  
Sbjct: 118 ----ILLDYMFQDL-----YNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSI 167

Query: 446 LPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLI 505
             +       L VL L +   +     S   L+ ++ L + +   +  +         L 
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 506 LMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIP---FQVCQLSYIQILDLSLNN 562
            + +    L+  +P      L  L  L+L  N     I        +L  +Q + L    
Sbjct: 228 SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLH--ELLRLQEIQLVGGQ 283

Query: 563 ISGIIPKCLNNFT 575
           ++ + P       
Sbjct: 284 LAVVEPYAFRGLN 296

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.3 bits (149), Expect = 6e-10
 Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 18/152 (11%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYL 129
           S  +LY L+ L++S   +  +  P  +  LN L  LS++           + +L  L++L
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 130 DLSYINLNKSRDWLRIIDK-----LPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALY 184
           +LSY   N     +  I+      L  L+ + L    L  + P     L    + L  L 
Sbjct: 254 NLSY---NP----ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL----NYLRVLN 302

Query: 185 LFENSLSSSIYPWLFNISSKLVVLDLDSNLLQ 216
           +  N L +++   +F+    L  L LDSN L 
Sbjct: 303 VSGNQL-TTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 19/136 (13%)

Query: 62  PLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEF-IGSLNKLRYLSLSSAEFEGPIPSQL 120
           P   T++P+ L   +L  L ++  +   + +P   +  L  LR+L+LS         S L
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 121 GNLSRLKYLDLSYINLNKSRDWLRIIDK-----LPSLRTLNLEHCHLPPIIPSDLLHLNF 175
             L RL+ + L      +    L +++      L  LR LN+    L   +   + H   
Sbjct: 269 HELLRLQEIQLVG---GQ----LAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFH--- 317

Query: 176 STSSLGALYLFENSLS 191
           S  +L  L L  N L+
Sbjct: 318 SVGNLETLILDSNPLA 333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (261), Expect = 1e-23
 Identities = 81/506 (16%), Positives = 154/506 (30%), Gaps = 91/506 (17%)

Query: 66  TISPSLLK-LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLS 124
               SL +  ++++ LDLS N  S       +    KL  L+LSS      +   L +LS
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLS 80

Query: 125 RLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALY 184
            L+ LDL+    N     ++ +   PS+ TL+  + ++  +  S              +Y
Sbjct: 81  TLRTLDLNN---NY----VQELLVGPSIETLHAANNNISRVSCSRG-------QGKKNIY 126

Query: 185 LFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG-SLLEPFDRMVSLRTLYLGFNELEELF 243
           L  N + + +        S++  LDL  N +   +  E      +L  L L +N + ++ 
Sbjct: 127 LANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184

Query: 244 LGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFS 303
                      +      KL  L LS N L  +     F   + +  + L +N       
Sbjct: 185 -----------KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLV---- 227

Query: 304 HDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGIS-DTVPDWFWDLSHTIA 362
                                   K L+    +E  D+   G    T+ D+F        
Sbjct: 228 ---------------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV-- 264

Query: 363 DFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESIS 422
              ++   +K  L   +       +     +   E L  P       L    +       
Sbjct: 265 -QTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA------ 316

Query: 423 FLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQT 482
                       L    +    RL        R   +      +   I +      +  T
Sbjct: 317 -----------LLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364

Query: 483 LSLYNNSLIGELPSFFK---SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKF 539
           L     +L  ++ +  +        +   +G+  L         E    L +L     ++
Sbjct: 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH-----ATEEQSPLQLLRAIVKRY 419

Query: 540 -HGNIPFQVCQLSYIQILDLSLNNIS 564
               +  Q  Q + I+  D+  +  +
Sbjct: 420 EEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  100 bits (251), Expect = 2e-22
 Identities = 64/493 (12%), Positives = 139/493 (28%), Gaps = 71/493 (14%)

Query: 228 SLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSN 287
           ++  +    N  +   +  + L   +       + +  L LSGN L+  ++ +  +  + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTK 59

Query: 288 LKALHLDDNSFTLKFSHDWIPPF----QLIIILLGSCQMGPHFPKWLQTQNQIEVLDISD 343
           L+ L+L  N                   L  + L +  +     + L     IE L  ++
Sbjct: 60  LELLNLSSNVLYE------TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 344 AGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPL 403
             IS           +      L+NN I                   +            
Sbjct: 109 NNISRVSCSRGQGKKN----IYLANNKIT-----------------MLRDLDEGCR---- 143

Query: 404 PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLAN 463
            S    L+L  N+         + +   LE L+L  N +   +    + F +L  L L++
Sbjct: 144 -SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSS 200

Query: 464 NFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIG 523
           N  +  +         +  +SL NN L+  +    +    L   DL  NG          
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 524 EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS 583
               ++  ++ ++ K       + C +    +          +     +    + +K  +
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316

Query: 584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEE 643
            L+   +   E + +E                           + +D    +    I + 
Sbjct: 317 LLSGQGS---ETERLECERENQAR------------------QREIDALKEQYRTVIDQV 355

Query: 644 IMDLVGLVALNLSRNNLTGQITPKIDQLKSLD--FLDLSQNQFVGGIPSSLCQLSRLSVM 701
            +     + L   +  L  Q++        LD           +         L  L  +
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415

Query: 702 NLSYNNLSGKIPL 714
              Y  +  +   
Sbjct: 416 VKRYEEMYVEQQS 428

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.8 bits (228), Expect = 1e-19
 Identities = 63/392 (16%), Positives = 131/392 (33%), Gaps = 26/392 (6%)

Query: 334 NQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS--SIDI 391
           N+ ++  ++D+ +   +        + + + +LS N +            PF+    +++
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAAD---LAPFTKLELLNL 65

Query: 392 SSNYFEGLIPPLPSNAS--VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDC 449
           SSN        L S ++   L+L+ N   E +       G  +E L  +NN +S R+   
Sbjct: 66  SSNVLYE-TLDLESLSTLRTLDLNNNYVQE-LL-----VGPSIETLHAANNNIS-RVSC- 116

Query: 450 WMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIG-ELPSFFKSCSQLILMD 508
             +      + LANN  +       G    +Q L L  N +          S   L  ++
Sbjct: 117 -SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 509 LGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIP 568
           L  N +  ++   +     KL  L L SNK    +  +    + +  + L  N +  +I 
Sbjct: 176 LQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 569 KCLNNFTGMAQKS-SSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVK 627
           K L     +       N              + +++     V    G   E  +   L  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 628 ILDFSMNKLSGTIPEEIMDL-VGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVG 686
              +    L     + ++ L     AL   + + T ++  + +       +D  + Q+  
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 687 GIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQL 718
            I     +      +      L  ++  G + 
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 33/255 (12%), Positives = 68/255 (26%), Gaps = 31/255 (12%)

Query: 63  LKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGN 122
           +             +++LDL  N+       E   S + L +L+L        +  Q+  
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-V 189

Query: 123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182
            ++LK LDLS    NK             +  ++L +  L  +I   L        +L  
Sbjct: 190 FAKLKTLDLSS---NKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFS----QNLEH 241

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN----- 237
             L  N          F+ + ++    +    ++    +  +        + G       
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 238 ------ELEELFLGKNRLN-------GTINQWLSRMYKLDALSLSGNSLTGVVTESVFSE 284
                  L  L   ++ L          +        +   +          V + V   
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLR 358

Query: 285 LSNLKALHLDDNSFT 299
                 L     +  
Sbjct: 359 KQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.0 bits (148), Expect = 9e-10
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDF 676
           HE +      KI   + + L   +         +  L+LS N L+      +     L+ 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 677 LDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNAS 724
           L+LS N         L  LS L  ++L+ N +  ++ +G  +++ +A+
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAA 107

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 640 IPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLS 699
           I E   +        ++ ++L   +        ++  LDLS N       + L   ++L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 700 VMNLSYNNLSGKIPLG--TQLQSFNAS 724
           ++NLS N L   + L   + L++ + +
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLDLN 88

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (257), Expect = 1e-23
 Identities = 61/389 (15%), Positives = 127/389 (32%), Gaps = 56/389 (14%)

Query: 155 LNLEHCHLPPIIPSDLLHLNFST-SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSN 213
                 H+              T ++   +    +++   +   L +   ++ +L+L+  
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDL 79

Query: 214 LLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSL 273
            ++      F    +++ LY+GFN +  L                 +  L  L L  N L
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLP----------PHVFQNVPLLTVLVLERNDL 129

Query: 274 TGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQ 333
           +  +   +F     L  L + +N+         I                       Q  
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLE------RIED------------------DTFQAT 164

Query: 334 NQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISS 393
             ++ L +S   ++         L H     N+S N +       +L        +D S 
Sbjct: 165 TSLQNLQLSSNRLTHVDLSLIPSLFH----ANVSYNLLS------TLAIPIAVEELDASH 214

Query: 394 NYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQF 453
           N    +  P+    ++L L  N  +++      +N   L  +DLS N L   +   +++ 
Sbjct: 215 NSINVVRGPVNVELTILKLQHNNLTDTAWL---LNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 454 DRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNG 513
            RL  L ++NN     +      + +++ L L +N  +  +        +L  + L  N 
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 329

Query: 514 LSGEIPTWIGEGLPKLVVLSLKSNKFHGN 542
           +   +          L  L+L  N +  N
Sbjct: 330 IV-TLKL---STHHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.1 bits (237), Expect = 6e-21
 Identities = 76/455 (16%), Positives = 136/455 (29%), Gaps = 87/455 (19%)

Query: 92  IPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPS 151
           I   +        + +     +     +   L+  K +      + K      ++D    
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA--LLDSFRQ 70

Query: 152 LRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLD 211
           +  LNL    +  I      +      ++  LY+  N++   + P +F     L VL L+
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLE 125

Query: 212 SNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGN 271
            N L       F     L TL +  N LE +           +        L  L LS N
Sbjct: 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERI----------EDDTFQATTSLQNLQLSSN 175

Query: 272 SLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQ 331
            LT V      S + +L   ++  N  +                              L 
Sbjct: 176 RLTHV----DLSLIPSLFHANVSYNLLST-----------------------------LA 202

Query: 332 TQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDI 391
               +E LD S   I+        +L+       L +N++                    
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVELTI----LKLQHNNL-------------------T 239

Query: 392 SSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWM 451
            + +              ++LS N+    I +   +   +LE L +SNN L   L     
Sbjct: 240 DTAWLLNY-----PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 452 QFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGK 511
               L VL L++N     + ++      ++ L L +NS I  L     +   L  + L  
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSH 348

Query: 512 NGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQ 546
           N         +      +   ++     H  I +Q
Sbjct: 349 NDWD---CNSLRALFRNVARPAVDDADQHCKIDYQ 380

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 5e-20
 Identities = 56/377 (14%), Positives = 130/377 (34%), Gaps = 49/377 (12%)

Query: 197 WLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQW 256
              N+    V  D+  ++    +   F+         +  N  + +    + +       
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFED--------ITLNNQKIVTFKNSTMRKLPAAL 64

Query: 257 LSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIIL 316
           L    +++ L+L+   +   +    F+    ++ L++  N+         +PP       
Sbjct: 65  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY------LPP------- 110

Query: 317 LGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLP 376
                         Q    + VL +    +S      F +    +   ++SNN+++ ++ 
Sbjct: 111 -----------HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK-LTTLSMSNNNLE-RIE 157

Query: 377 NLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLD 436
           + + +      ++ +SSN    +   L  +    N+S N  S +++         +E LD
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-TLAIP-----IAVEELD 211

Query: 437 LSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPS 496
            S+N ++  +         L +L L +N  +      +     +  + L  N L   +  
Sbjct: 212 ASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 497 FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQIL 556
            F    +L  + +  N L   +  +    +P L VL L  N    ++     Q   ++ L
Sbjct: 267 PFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323

Query: 557 DLSLNNISGIIPKCLNN 573
            L  N+I  +     + 
Sbjct: 324 YLDHNSIVTLKLSTHHT 340

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.7 bits (223), Expect = 3e-19
 Identities = 65/360 (18%), Positives = 124/360 (34%), Gaps = 54/360 (15%)

Query: 366 LSNNHIKGKLPNLSLRFDPFS----SSIDISSNYFEGLIPPLPSNAS---VLNLSRNKFS 418
             + HI  +  ++   F+  +      +   ++    L   L  +     +LNL+  +  
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 419 ESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSM-GFL 477
           E I        H ++ L +  N +    P  +     L VL L  N  S  +P+ +    
Sbjct: 83  E-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 140

Query: 478 HSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537
             + TLS+ NN+L       F++ + L  + L  N L+  +       +P L   ++  N
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYN 196

Query: 538 KFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQG 597
                    +     ++ LD S N+I+ +        T +      +  +T         
Sbjct: 197 LLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLTDTAWL---- 244

Query: 598 IEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEI-MDLVGLVALNLS 656
                                       +  +D S N+L   I     + +  L  L +S
Sbjct: 245 -----------------------LNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYIS 280

Query: 657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT 716
            N L   +      + +L  LDLS N  +  +  +  Q  RL  + L +N++   + L T
Sbjct: 281 NNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 61/369 (16%), Positives = 113/369 (30%), Gaps = 68/369 (18%)

Query: 66  TISPSLLKLYHLRHLDLSENDFSGSRIPEFI-GSLNKLRYLSLSSAEFEGPIPSQLGNLS 124
                 + L + + +    +     ++P  +  S  ++  L+L+  + E           
Sbjct: 36  YFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH 93

Query: 125 RLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALY 184
            ++ L + +  +        +   +P L  L LE   L   +P  + H   +T  L  L 
Sbjct: 94  TIQKLYMGFNAIRYLPP--HVFQNVPLLTVLVLERNDL-SSLPRGIFH---NTPKLTTLS 147

Query: 185 LFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE------ 238
           +  N+L   I    F  ++ L  L L SN L          + SL    + +N       
Sbjct: 148 MSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAI 203

Query: 239 ---LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDD 295
              +EEL    N +N           +L  L L  N+LT     +       L  + L  
Sbjct: 204 PIAVEELDASHNSINVVRGPVNV---ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSY 257

Query: 296 NSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFW 355
           N          I                           ++E L IS+  +   +  +  
Sbjct: 258 NELEK------IM------------------YHPFVKMQRLERLYISNNRLVA-LNLYGQ 292

Query: 356 DLSHTIADFNLSNNHIK------GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASV 409
            +   +   +LS+NH+        +   L         ++ +  N    L          
Sbjct: 293 PIPT-LKVLDLSHNHLLHVERNQPQFDRL--------ENLYLDHNSIVTLKLSTHHTLKN 343

Query: 410 LNLSRNKFS 418
           L LS N + 
Sbjct: 344 LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 77/447 (17%), Positives = 139/447 (31%), Gaps = 95/447 (21%)

Query: 291 LHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKW-LQTQNQIEVLDISDAGISDT 349
           +H+D  +  + F  + I      I+   +  M    P   L +  Q+E+L+++D  I + 
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEI 84

Query: 350 VPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASV 409
               F      I    +  N I+                  +  + F+ +        +V
Sbjct: 85  DTYAFAYAHT-IQKLYMGFNAIR-----------------YLPPHVFQNV-----PLLTV 121

Query: 410 LNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGK 469
           L L RN  S S+      N  KL  L +SNN L     D +     L  L L++N  +  
Sbjct: 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-H 179

Query: 470 IPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKL 529
           +   +  + S+   ++  N L     S       +  +D   N ++  +    G    +L
Sbjct: 180 VD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVR---GPVNVEL 228

Query: 530 VVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589
            +L L+ N               +  +DLS N +  I+         +            
Sbjct: 229 TILKLQHNNLTDTAWLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRL------------ 274

Query: 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVG 649
                                                + L  S N+L   +      +  
Sbjct: 275 -------------------------------------ERLYISNNRLV-ALNLYGQPIPT 296

Query: 650 LVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709
           L  L+LS N+L   +     Q   L+ L L  N  V  +  S      L  + LS+N+  
Sbjct: 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

Query: 710 GKIPLGTQLQSFNASVYAGNPELCGLP 736
               L    ++          + C + 
Sbjct: 353 C-NSLRALFRNVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 52/309 (16%), Positives = 102/309 (33%), Gaps = 66/309 (21%)

Query: 403 LPSNASVLNLSRNKFSESISF-LCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSL 461
           L  +    ++  +  ++ + F    I  +  + +   N+ +          F ++ +L+L
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 462 ANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTW 521
            +         +  + H+IQ L +  N++    P  F++   L ++ L +N LS  +P  
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRG 135

Query: 522 IGEGLPKLVVLSLKSNKFHGNIPFQVCQ-LSYIQILDLSLNNISGIIPKCLNNFTGMAQK 580
           I    PKL  LS+ +N     I     Q  + +Q L LS N ++ +    + +       
Sbjct: 136 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS------- 187

Query: 581 SSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTI 640
                                                        +   + S N LS   
Sbjct: 188 ---------------------------------------------LFHANVSYNLLS--- 199

Query: 641 PEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSV 700
              +   + +  L+ S N++   +         L  L L  N       + L     L  
Sbjct: 200 --TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVE 252

Query: 701 MNLSYNNLS 709
           ++LSYN L 
Sbjct: 253 VDLSYNELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 43/258 (16%), Positives = 84/258 (32%), Gaps = 60/258 (23%)

Query: 470 IPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKL 529
           I  ++ +      + +   +          + +   ++    + +  ++P  + +   ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 530 VVLSLKSNKFHGNIPFQV-CQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAIT 588
            +L+L   +    I          IQ L +  N I  + P    N               
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN--------------- 115

Query: 589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEI-MDL 647
                                             + L+ +L    N LS ++P  I  + 
Sbjct: 116 ----------------------------------VPLLTVLVLERNDLS-SLPRGIFHNT 140

Query: 648 VGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN 706
             L  L++S NNL  +I         SL  L LS N+    +  SL  +  L   N+SYN
Sbjct: 141 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYN 196

Query: 707 NLSGKIPLGTQLQSFNAS 724
            LS  + +   ++  +AS
Sbjct: 197 LLS-TLAIPIAVEELDAS 213

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 17/166 (10%)

Query: 74  LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSY 133
              L  L L  N+ +       +     L  + LS  E E  +      + RL+ L +S 
Sbjct: 225 NVELTILKLQHNNLT--DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 134 INLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSS 193
              N+          +P+L+ L+L H HL   +  +          L  LYL  NS+  +
Sbjct: 282 ---NRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQF----DRLENLYLDHNSI-VT 332

Query: 194 IYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNEL 239
           +          L  L L  N    + L    R  ++    +   + 
Sbjct: 333 LKLSTH---HTLKNLTLSHNDWDCNSLRALFR--NVARPAVDDADQ 373

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (251), Expect = 3e-23
 Identities = 48/290 (16%), Positives = 98/290 (33%), Gaps = 36/290 (12%)

Query: 78  RHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLN 137
             +  +    +   +P  I   +    L L S + +         L++L  L LS   L+
Sbjct: 10  TEIRCNSKGLT--SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 138 KSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPW 197
                 +      SL+ L+L    +   + S+ L L      L  L    ++L       
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGL----EQLEHLDFQHSNLKQMSEFS 120

Query: 198 LFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN---------------ELEEL 242
           +F     L+ LD+     + +    F+ + SL  L +  N                L  L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 243 FLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKF 302
            L + +L        + +  L  L++S N+    +    +  L++L+ L    N      
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TS 238

Query: 303 SHDWIPPF--QLIIILLG------SCQMGPHFPKWLQTQNQIEVLDISDA 344
               +  F   L  + L       +C+    F +W++   +  ++++   
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDFACTCEHQS-FLQWIK-DQRQLLVEVERM 286

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.2 bits (245), Expect = 1e-22
 Identities = 55/230 (23%), Positives = 82/230 (35%), Gaps = 17/230 (7%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPEFIGS-LNKLRYLSLSSAEFEGPIPSQLGNLSRLKY 128
              KL  L  L LS N  S              L+YL LS       + S    L +L++
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 105

Query: 129 LDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFEN 188
           LD  + NL +  ++  +   L +L  L++ H H           L    SSL  L +  N
Sbjct: 106 LDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGL----SSLEVLKMAGN 160

Query: 189 SLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNR 248
           S   +  P +F     L  LDL    L+      F+ + SL+ L +  N    L      
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--- 217

Query: 249 LNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSF 298
                      +  L  L  S N +     + +    S+L  L+L  N F
Sbjct: 218 -------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.2 bits (201), Expect = 7e-17
 Identities = 47/242 (19%), Positives = 75/242 (30%), Gaps = 33/242 (13%)

Query: 150 PSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS-SIYPWLFNISSKLVVL 208
            S   L LE   L  +       L    + L  L L  N LS           ++ L  L
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKL----TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 209 DLDSNLLQGSLLEPFDRMVSLRTLYLGFNE---------------LEELFLGKNRLNGTI 253
           DL  N +  ++   F  +  L  L    +                L  L +         
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 254 NQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPP---- 309
           N   + +  L+ L ++GNS        +F+EL NL  L L             + P    
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------LSPTAFN 196

Query: 310 --FQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLS 367
               L ++ +             +  N ++VLD S   I  +          ++A  NL+
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

Query: 368 NN 369
            N
Sbjct: 257 QN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 62/307 (20%), Positives = 102/307 (33%), Gaps = 63/307 (20%)

Query: 386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGR 445
            + I  +S     +   +PS+A+ L L  NK   S+         +L  L LS+N LS  
Sbjct: 9   GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS-F 66

Query: 446 LPDCWMQFD---RLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELP--SFFKS 500
              C         L  L L+ N     +  +   L  ++ L   +++ + ++   S F S
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLS 124

Query: 501 CSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQV-CQLSYIQILDLS 559
              LI +D+            I  GL  L VL +  N F  N    +  +L  +  LDLS
Sbjct: 125 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 560 LNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEY 619
              +  + P   N+ + +                                          
Sbjct: 184 QCQLEQLSPTAFNSLSSL------------------------------------------ 201

Query: 620 RSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI--DQLKSLDFL 677
                  ++L+ S N            L  L  L+ S N++      +       SL FL
Sbjct: 202 -------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFL 253

Query: 678 DLSQNQF 684
           +L+QN F
Sbjct: 254 NLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 62/347 (17%), Positives = 101/347 (29%), Gaps = 101/347 (29%)

Query: 151 SLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDL 210
           S   +      L   +P+ +       SS   L L  N L S +   +F+  ++L  L L
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIP------SSATRLELESNKLQS-LPHGVFDKLTQLTKLSL 59

Query: 211 DSNLLQGSLLEP--FDRMVSLRTLYLGFNELEEL---FLGKNRLNGTINQWLSRMYKLDA 265
            SN L              SL+ L L FN +  +   FLG              + +L+ 
Sbjct: 60  SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG--------------LEQLEH 105

Query: 266 LSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPH 325
           L    ++L  +   SVF  L NL  L +                                
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHT----------------------------- 136

Query: 326 FPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPF 385
                       V               F  LS  +    ++ N  +             
Sbjct: 137 ---------HTRVAF----------NGIFNGLSS-LEVLKMAGNSFQENFL--------- 167

Query: 386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGR 445
                   + F  L      N + L+LS+ +    +S     +   L+ L++S+N     
Sbjct: 168 -------PDIFTEL-----RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 446 LPDCWMQFDRLAVLSLANNFFSGKIPKSM--GFLHSIQTLSLYNNSL 490
               +   + L VL  + N       K     F  S+  L+L  N  
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 55/273 (20%), Positives = 90/273 (32%), Gaps = 49/273 (17%)

Query: 475 GFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLS-GEIPTWIGEGLPKLVVLS 533
           G   S   L L +N L       F   +QL  + L  NGLS     +    G   L  L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 534 LKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQ-----KSSSNLAIT 588
           L  N     +      L  ++ LD   +N+  +    +  F  +        S ++  + 
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVA 141

Query: 589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEI-MDL 647
            N  F                             L  +++L  + N        +I  +L
Sbjct: 142 FNGIFNG---------------------------LSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 648 VGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN 706
             L  L+LS+  L  Q++P   + L SL  L++S N F          L+ L V++ S N
Sbjct: 175 RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 707 NLSGKIP------LGTQLQSFNASVYAGNPELC 733
           ++             + L   N +    N   C
Sbjct: 234 HIM-TSKKQELQHFPSSLAFLNLT---QNDFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 31/215 (14%)

Query: 365 NLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSE-SISF 423
           +LS+N +               S     S    G      ++   L+LS N     S +F
Sbjct: 58  SLSSNGL---------------SFKGCCSQSDFGT-----TSLKYLDLSFNGVITMSSNF 97

Query: 424 LCSINGHKLEFLDLSNNILSGRLPDC--WMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQ 481
           L      +LE LD  ++ L  ++ +   ++    L  L +++             L S++
Sbjct: 98  LGL---EQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 482 TLSLYNNSLIGELPS-FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH 540
            L +  NS         F     L  +DL +  L  ++       L  L VL++  N F 
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 541 GNIPFQVCQ-LSYIQILDLSLNNISGIIPKCLNNF 574
            ++     + L+ +Q+LD SLN+I     + L +F
Sbjct: 213 -SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 36/214 (16%), Positives = 71/214 (33%), Gaps = 27/214 (12%)

Query: 356 DLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRN 415
            +  +     L +N ++                  +    F+ L     +  + L+LS N
Sbjct: 25  GIPSSATRLELESNKLQ-----------------SLPHGVFDKL-----TQLTKLSLSSN 62

Query: 416 KFSE-SISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSM 474
             S              L++LDLS N +   +   ++  ++L  L   ++        S+
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 475 -GFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLS 533
              L ++  L + +          F   S L ++ +  N         I   L  L  L 
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 534 LKSNKFHGNIPFQV-CQLSYIQILDLSLNNISGI 566
           L   +    +       LS +Q+L++S NN   +
Sbjct: 182 LSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSL 214

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 66  TISPSLLK-LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLS 124
                +   L  L  L ++ N F  + +P+    L  L +L LS  + E   P+   +LS
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199

Query: 125 RLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALY 184
            L+ L++S+ N             L SL+ L+    H+      +L H     SSL  L 
Sbjct: 200 SLQVLNMSHNNFFSLDT--FPYKCLNSLQVLDYSLNHIMTSKKQELQHFP---SSLAFLN 254

Query: 185 LFENSLS 191
           L +N  +
Sbjct: 255 LTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 35/214 (16%)

Query: 500 SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLS 559
           SCS   +      GL+  +PT I         L L+SNK          +L+ +  L LS
Sbjct: 6   SCSGTEI-RCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60

Query: 560 LNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEY 619
            N +S     C  +  G    S   L ++ N      G+  + S                
Sbjct: 61  SNGLS-FKGCCSQSDFGT--TSLKYLDLSFN------GVITMSSNFLG------------ 99

Query: 620 RSTLGLVKILDFSMNKLSGTIPEEIM--DLVGLVALNLSRNNLTGQITPKI-DQLKSLDF 676
              L  ++ LDF  + L   + E  +   L  L+ L++S  +        I + L SL+ 
Sbjct: 100 ---LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEV 154

Query: 677 LDLSQNQFVGGIPS-SLCQLSRLSVMNLSYNNLS 709
           L ++ N F          +L  L+ ++LS   L 
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (259), Expect = 3e-23
 Identities = 60/391 (15%), Positives = 129/391 (32%), Gaps = 57/391 (14%)

Query: 152 LRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLD 211
               ++        +      +  +  +   +    +++   +   L +   ++ +L+L+
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLN--NQKIVTFKNSTMRK-LPAALLDSFRQVELLNLN 83

Query: 212 SNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGN 271
              ++      F    +++ LY+GFN +  L                 +  L  L L  N
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP----------PHVFQNVPLLTVLVLERN 133

Query: 272 SLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQ 331
            L+  +   +F     L  L + +N+         I                       Q
Sbjct: 134 DLS-SLPRGIFHNTPKLTTLSMSNNNLER------IED------------------DTFQ 168

Query: 332 TQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDI 391
               ++ L +S   ++         L H     N+S N +       +L        +D 
Sbjct: 169 ATTSLQNLQLSSNRLTHVDLSLIPSLFH----ANVSYNLLS------TLAIPIAVEELDA 218

Query: 392 SSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWM 451
           S N    +  P+    ++L L  N  +++      +N   L  +DLS N L   +   ++
Sbjct: 219 SHNSINVVRGPVNVELTILKLQHNNLTDTAWL---LNYPGLVEVDLSYNELEKIMYHPFV 275

Query: 452 QFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGK 511
           +  RL  L ++NN     +      + +++ L L +N L+  +        +L  + L  
Sbjct: 276 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333

Query: 512 NGLSGEIPTWIGEGLPKLVVLSLKSNKFHGN 542
           N +   +          L  L+L  N +  N
Sbjct: 334 NSIV-TLKL---STHHTLKNLTLSHNDWDCN 360

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 92.3 bits (229), Expect = 1e-19
 Identities = 74/446 (16%), Positives = 132/446 (29%), Gaps = 84/446 (18%)

Query: 92  IPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPS 151
           I   +        + +     +     +   L+  K +      + K      ++D    
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA--ALLDSFRQ 76

Query: 152 LRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLD 211
           +  LNL    +  I      +      ++  LY+  N++   + P +F     L VL L+
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLE 131

Query: 212 SNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGN 271
            N L       F     L TL +  N LE +                    L  L LS N
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD----------TFQATTSLQNLQLSSN 181

Query: 272 SLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQ 331
            LT V      S + +L   ++  N  +                              L 
Sbjct: 182 RLTHV----DLSLIPSLFHANVSYNLLST-----------------------------LA 208

Query: 332 TQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDI 391
               +E LD S   I+        +L+       L +N++                    
Sbjct: 209 IPIAVEELDASHNSINVVRGPVNVELTI----LKLQHNNL-------------------T 245

Query: 392 SSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWM 451
            + +              ++LS N+    I +   +   +LE L +SNN L   L     
Sbjct: 246 DTAWLLNY-----PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 452 QFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGK 511
               L VL L++N     + ++      ++ L L +NS I  L     +   L  + L  
Sbjct: 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSH 354

Query: 512 NGLSGEIPTWIGEGLPKLVVLSLKSN 537
           N         +   + +  V     +
Sbjct: 355 NDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.2 bits (221), Expect = 1e-18
 Identities = 65/360 (18%), Positives = 124/360 (34%), Gaps = 54/360 (15%)

Query: 366 LSNNHIKGKLPNLSLRFDPFSSS----IDISSNYFEGLIPPLPSNAS---VLNLSRNKFS 418
             + HI  +  ++   F+  + +    +   ++    L   L  +     +LNL+  +  
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 419 ESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSM-GFL 477
           E I        H ++ L +  N +    P  +     L VL L  N  S  +P+ +    
Sbjct: 89  E-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 146

Query: 478 HSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537
             + TLS+ NN+L       F++ + L  + L  N L+  +       +P L   ++  N
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYN 202

Query: 538 KFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQG 597
                    +     ++ LD S N+I+ +        T +      +  +T         
Sbjct: 203 LLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLTDTAWL---- 250

Query: 598 IEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMD-LVGLVALNLS 656
                                       +  +D S N+L   I       +  L  L +S
Sbjct: 251 -----------------------LNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYIS 286

Query: 657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT 716
            N L   +      + +L  LDLS N  +  +  +  Q  RL  + L +N++   + L T
Sbjct: 287 NNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLKLST 343

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.9 bits (215), Expect = 7e-18
 Identities = 60/334 (17%), Positives = 111/334 (33%), Gaps = 46/334 (13%)

Query: 66  TISPSLLKLYHLRHLDLSENDFSGSRIPEFI-GSLNKLRYLSLSSAEFEGPIPSQLGNLS 124
                 + L + + +    +     ++P  +  S  ++  L+L+  + E           
Sbjct: 42  YFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH 99

Query: 125 RLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALY 184
            ++ L + +  +        +   +P L  L LE   L   +P  + H   +T  L  L 
Sbjct: 100 TIQKLYMGFNAIRYLPP--HVFQNVPLLTVLVLERNDL-SSLPRGIFH---NTPKLTTLS 153

Query: 185 LFENSLSSSIYPWLFNISSKLVVLDLDSNL----------------LQGSLLEPFDRMVS 228
           +  N+L   I    F  ++ L  L L SN                 +  +LL      ++
Sbjct: 154 MSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 212

Query: 229 LRTLYLGFN-----------ELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVV 277
           +  L    N           EL  L L  N L  T   WL     L  + LS N L   +
Sbjct: 213 VEELDASHNSINVVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KI 269

Query: 278 TESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIE 337
               F ++  L+ L++ +N      +    P   L ++ L    +  H  +     +++E
Sbjct: 270 MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327

Query: 338 VLDISDAGISDTVPDWFWDLSHTIADFNLSNNHI 371
            L +    I          L +      LS+N  
Sbjct: 328 NLYLDHNSIVTLKLSTHHTLKN----LTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.4 bits (211), Expect = 2e-17
 Identities = 60/311 (19%), Positives = 123/311 (39%), Gaps = 23/311 (7%)

Query: 403 LPSNASVLNLSRNKFSESISF-LCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSL 461
           L  +    ++  +  ++ + F    I  +  + +   N+ +          F ++ +L+L
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 462 ANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTW 521
            +         +  + H+IQ L +  N++    P  F++   L ++ L +N LS  +P  
Sbjct: 83  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRG 141

Query: 522 IGEGLPKLVVLSLKSNKFHGNIPFQVCQ-LSYIQILDLSLNNISGIIPKCLNNFTGMAQK 580
           I    PKL  LS+ +N     I     Q  + +Q L LS N ++ +    + +       
Sbjct: 142 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF----- 195

Query: 581 SSSNLAITSNYTFERQGIEFLES-YVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGT 639
              +  ++ N          +E     +  +               + IL    N L  T
Sbjct: 196 ---HANVSYNLLSTLAIPIAVEELDASHNSIN-----VVRGPVNVELTILKLQHNNL--T 245

Query: 640 IPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQFVGGIPSSLCQLSRL 698
               +++  GLV ++LS N L  +I      +++ L+ L +S N+ V  +      +  L
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 303

Query: 699 SVMNLSYNNLS 709
            V++LS+N+L 
Sbjct: 304 KVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.3 bits (203), Expect = 2e-16
 Identities = 83/483 (17%), Positives = 150/483 (31%), Gaps = 70/483 (14%)

Query: 66  TISPSLLK-LYHLRHLDLSENDFSGSRIPEFI-GSLNKLRYLSLSSAEFEGPIPSQLGNL 123
            + P + + +  L  L L  ND S   +P  I  +  KL  LS+S+   E          
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170

Query: 124 SRLKYLDLSY--------------INLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSD 169
           + L+ L LS                + N S + L  +    ++  L+  H  +  ++   
Sbjct: 171 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI-NVVRGP 229

Query: 170 LLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSL 229
           +         L  L L  N+L+ +   WL N    LV +DL  N L+  +  PF +M  L
Sbjct: 230 VN------VELTILKLQHNNLTDT--AWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRL 280

Query: 230 RTLYLGFNE-------------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGV 276
             LY+  N              L+ L L  N L   + +   +  +L+ L L  NS+  +
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339

Query: 277 VTESVFSELSNLKALHLDDNSFT----------------LKFSHDWIPPFQLIIILLGSC 320
                 S    LK L L  N +                           +QL   L    
Sbjct: 340 ----KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKE 395

Query: 321 QMGPHFPKWLQTQNQIEVLDISDAGISD--------TVPDWFWDLSHTIADFNLSNNHIK 372
              P+  + LQ      V++                +V      ++         N  ++
Sbjct: 396 SDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLE 455

Query: 373 GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKL 432
            ++  L       ++         +GL   + +N     L ++  + S   L  +  H  
Sbjct: 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLK 515

Query: 433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIG 492
           E           R  +   +      L   N     ++         ++  +      + 
Sbjct: 516 ERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575

Query: 493 ELP 495
           +L 
Sbjct: 576 QLE 578

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 66/354 (18%), Positives = 119/354 (33%), Gaps = 69/354 (19%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN 135
           HLR +  S+       +P+ I        L L + +           L  L  L L    
Sbjct: 34  HLRVVQCSDLGLK--AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 136 LNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIY 195
           ++K  +  +    L  L+ L +   HL   IP +L       SSL  L + +N +   + 
Sbjct: 90  ISKIHE--KAFSPLRKLQKLYISKNHL-VEIPPNLP------SSLVELRIHDNRI-RKVP 139

Query: 196 PWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNE-----------LEEL 242
             +F+    +  +++  N L+ S  EP  FD +  L  L +   +           L EL
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNEL 198

Query: 243 FLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKF 302
            L  N++     + L R  KL  L L  N +  ++     S L  L+ LHLD+N  +   
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS--- 254

Query: 303 SHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIA 362
                                   P  L     ++V+ +    I+    + F  +   + 
Sbjct: 255 ----------------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292

Query: 363 DFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNK 416
               +          +SL  +P     ++    F  +     ++   +     K
Sbjct: 293 RAYYN---------GISLFNNPVPYW-EVQPATFRCV-----TDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 62/325 (19%), Positives = 104/325 (32%), Gaps = 62/325 (19%)

Query: 228 SLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSN 287
               L L  N++ EL                 +  L AL L  N ++  + E  FS L  
Sbjct: 55  DTTLLDLQNNDISELRKDD----------FKGLQHLYALVLVNNKIS-KIHEKAFSPLRK 103

Query: 288 LKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGIS 347
           L+ L++  N          IPP                        + +  L I D  I 
Sbjct: 104 LQKLYISKNHLVE------IPPNLP---------------------SSLVELRIHDNRIR 136

Query: 348 DTVPDWFWDLSHTIADFNLSNNHIK------GKLPNLSLRFDPFSSSIDISSNYFEGLIP 401
                 F  L + +    +  N ++      G    L L +      + IS     G+  
Sbjct: 137 KVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGLKLNY------LRISEAKLTGIPK 189

Query: 402 PLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSL 461
            LP   + L+L  NK   +I     +   KL  L L +N +             L  L L
Sbjct: 190 DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 462 ANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPS-------FFKSCSQLILMDLGKNGL 514
            NN  S ++P  +  L  +Q + L+ N+ I ++         F    +    + L  N +
Sbjct: 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 515 S-GEIPTWIGEGLPKLVVLSLKSNK 538
              E+       +   + +   + K
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 39/250 (15%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYL 129
           +   L  L+ L +S+N      IP      + L  L +               L  +  +
Sbjct: 97  AFSPLRKLQKLYISKNHL--VEIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 130 DLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENS 189
           ++    L  S       D L  L  L +    L   IP DL        +L  L+L  N 
Sbjct: 153 EMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL-TGIPKDLP------ETLNELHLDHNK 204

Query: 190 LSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNE--------- 238
           +  +I        SKL  L L  N +   ++E      + +LR L+L  N+         
Sbjct: 205 I-QAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSRVPAGLP 261

Query: 239 ----LEELFLGKNRLNGTIN-------QWLSRMYKLDALSLSGNSLTGV-VTESVFSELS 286
               L+ ++L  N +   +         +  +    + +SL  N +    V  + F  ++
Sbjct: 262 DLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 287 NLKALHLDDN 296
           +  A+   + 
Sbjct: 321 DRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 54/319 (16%), Positives = 98/319 (30%), Gaps = 68/319 (21%)

Query: 400 IPP-LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAV 458
           +P  +  + ++L+L  N  S  +          L  L L NN +S      +    +L  
Sbjct: 48  VPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106

Query: 459 LSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGL-SGE 517
           L ++ N    +IP       S+  L +++N +       F     +  +++G N L +  
Sbjct: 107 LYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 518 IPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGM 577
                 +GL KL  L +   K    IP  +     +  L L  N I  I           
Sbjct: 164 FEPGAFDGL-KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAI----------- 208

Query: 578 AQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLS 637
                            R                              +  L    N++ 
Sbjct: 209 -----------ELEDLLR---------------------------YSKLYRLGLGHNQIR 230

Query: 638 GTIPEEIMD-LVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLC--- 693
             I    +  L  L  L+L  N L+ ++   +  LK L  + L  N       +  C   
Sbjct: 231 -MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288

Query: 694 ---QLSRLSVMNLSYNNLS 709
              + +  + ++L  N + 
Sbjct: 289 FGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 25/240 (10%)

Query: 336 IEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK-------GKLPNLSLRFDPFSSS 388
             +LD+ +  IS+   D F  L H +    L NN I          L  L          
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQH-LYALVLVNNKISKIHEKAFSPLRKLQ--------K 106

Query: 389 IDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNN-ILSGRLP 447
           + IS N+   + P LPS+   L +  N+    +          +  +++  N + +    
Sbjct: 107 LYISKNHLVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 448 DCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF-FKSCSQLIL 506
                  +L  L ++    +  IPK      ++  L L +N  I  +        S+L  
Sbjct: 166 PGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNK-IQAIELEDLLRYSKLYR 221

Query: 507 MDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI 566
           + LG N +   I       LP L  L L +NK    +P  +  L  +Q++ L  NNI+ +
Sbjct: 222 LGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 59/366 (16%), Positives = 101/366 (27%), Gaps = 97/366 (26%)

Query: 151 SLRTLNLEHCHL---PPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVV 207
            LR +      L   P  I  D   L           L  N +S  +    F     L  
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLL----------DLQNNDISE-LRKDDFKGLQHLYA 82

Query: 208 LDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNE-----------LEELFLGKNRLNGTIN 254
           L L +N +  S +    F  +  L+ LY+  N            L EL +  NR+     
Sbjct: 83  LVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPK 140

Query: 255 QWLSRMYKLDALSLSGNSLTGV-VTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLI 313
              S +  ++ + + GN L         F  L  L  L + +   T              
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-------------- 185

Query: 314 IILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKG 373
                   +    P+ L        L +    I     +     S  +    L +N I+ 
Sbjct: 186 -------GIPKDLPETLNE------LHLDHNKIQAIELEDLLRYSK-LYRLGLGHNQIR- 230

Query: 374 KLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSE-SISFLCSINGHKL 432
                            I +     L          L+L  NK S          +   L
Sbjct: 231 ----------------MIENGSLSFL-----PTLRELHLDNNKLSRVPAGLP---DLKLL 266

Query: 433 EFLDLSNNILSGRLPD-------CWMQFDRLAVLSLANNFFS-GKIPKSMGF--LHSIQT 482
           + + L  N ++ ++           ++      +SL NN     ++  +  F  +     
Sbjct: 267 QVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT-FRCVTDRLA 324

Query: 483 LSLYNN 488
           +   N 
Sbjct: 325 IQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQF 684
             +LD   N +S    ++   L  L AL L  N ++ +I  K    L+ L  L +S+N  
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL 114

Query: 685 VGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT 716
           V  IP +L   S L  + +  N +  K+P G 
Sbjct: 115 V-EIPPNL--PSSLVELRIHDNRIR-KVPKGV 142

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQF- 684
           + L  S N L   IP  +     LV L +  N +  ++   +   L++++ +++  N   
Sbjct: 105 QKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 685 VGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT 716
             G         +L+ + +S   L+  IP   
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL 191

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.2 bits (247), Expect = 8e-22
 Identities = 91/538 (16%), Positives = 164/538 (30%), Gaps = 93/538 (17%)

Query: 166 IPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDR 225
           +P DL           AL L +NS+S  +     +  S+L VL L  N ++      F  
Sbjct: 46  VPKDL------PPRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98

Query: 226 MVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSEL 285
              L  L +  N L+ +                 M  L  L LS N    +     F  L
Sbjct: 99  NQDLEYLDVSHNRLQNISCCP-------------MASLRHLDLSFNDFDVLPVCKEFGNL 145

Query: 286 SNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAG 345
           + L  L L    F                      +                +LD+    
Sbjct: 146 TKLTFLGLSAAKF----------------------RQLD-LLPVAHLHLSCILLDLVSYH 182

Query: 346 ISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSN-----YFEGLI 400
           I     +     + T+       N +     N+S+         +I  N          +
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 401 PPLPSNASVLNLSRNKFSES----ISFLCSINGHKLEFLDLSNNILSGRLPDCWMQF--- 453
             L    ++LN++      +    +          +E+L++ N  ++ R+      +   
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 454 --DRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGK 511
               L +  + N  F             +    L  +           S S    ++  +
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 512 NGLSGEIPTWIGEGLPKLVVLSLKSNKFH--GNIPFQVCQLSYIQILDLSLNNISGIIPK 569
           N  + +        L +L  L L+ N       +      +S ++ LD+SLN+++     
Sbjct: 363 NVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421

Query: 570 CLNNFTGMAQK---SSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLV 626
               +         SS+ L  +    F                L  K            V
Sbjct: 422 RTCAWAESILVLNLSSNMLTGSV---FRC--------------LPPK------------V 452

Query: 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQF 684
           K+LD   N++  +IP+++  L  L  LN++ N L        D+L SL ++ L  N +
Sbjct: 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.2 bits (216), Expect = 6e-18
 Identities = 86/477 (18%), Positives = 160/477 (33%), Gaps = 56/477 (11%)

Query: 124 SRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGAL 183
            R K L LS  ++++ R     I  L  LR L L H  +  +     L        L  L
Sbjct: 52  PRTKALSLSQNSISELRM--PDISFLSELRVLRLSHNRIRSLDFHVFLFN----QDLEYL 105

Query: 184 YLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG-SLLEPFDRMVSLRTLYLGFNELEEL 242
            +  N L +     +    + L  LDL  N      + + F  +  L  L L   +  +L
Sbjct: 106 DVSHNRLQNISCCPM----ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161

Query: 243 FLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLK- 301
            L         +  LS +     L L    + G  TES+   + N   LHL  +  +L  
Sbjct: 162 DLLPVA-----HLHLSCIL----LDLVSYHIKGGETESLQ--IPNTTVLHLVFHPNSLFS 210

Query: 302 ------FSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTV----- 350
                  +         I +   +CQ    F   L     +  + +     +        
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270

Query: 351 -PDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSI----DISSNYFEGLIP---P 402
              W   + +     N+ N  I  ++      +   +        + +  F         
Sbjct: 271 QFFWPRPVEY----LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

Query: 403 LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLA 462
           + +  ++  LS +  +  I  +C  +     FL+ + N+ +  +        RL  L L 
Sbjct: 327 VFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385

Query: 463 NNFFSGKIPKSMGFLHSIQTLSLYNNSL----IGELPSFFKSCSQLILMDLGKNGLSGEI 518
            N       K      ++ +L   + SL                 +++++L  N L+G +
Sbjct: 386 RNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 519 PTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFT 575
              +    PK+ VL L +N+   +IP  V  L  +Q L+++ N +  +     +  T
Sbjct: 445 FRCL---PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.8 bits (215), Expect = 6e-18
 Identities = 85/428 (19%), Positives = 158/428 (36%), Gaps = 51/428 (11%)

Query: 73  KLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLS 132
            +  LRHLDLS NDF    + +  G+L KL +L LS+A+F      +  +L  + +L LS
Sbjct: 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF------RQLDLLPVAHLHLS 172

Query: 133 YINLNKSRDWLRIIDKLPSLRTLNLEHCHLP-PIIPSDLLHLNFSTSSLGALYLFENSLS 191
            I L+     ++  +   SL+  N    HL         + +N S ++LG L L    L+
Sbjct: 173 CILLDLVSYHIKGGE-TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231

Query: 192 ----SSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKN 247
                 +  +L  ++    +L++    ++ +               + +  +  L + + 
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291

Query: 248 RLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWI 307
                     + +  L    +          E+++S  + +    L  +           
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTP-------- 342

Query: 308 PPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLS 367
                   +   C   P         +    L+ +    +D+V      L        L 
Sbjct: 343 -------FIHMVCPPSP---------SSFTFLNFTQNVFTDSVFQGCSTLKRLQT-LILQ 385

Query: 368 NNHIKGKLPNLSLRFDPFSS--SIDISSNYFEGLIPP----LPSNASVLNLSRNKFSESI 421
            N +K     ++L     SS  ++D+S N               +  VLNLS N  + S+
Sbjct: 386 RNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 422 SFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSM-GFLHSI 480
            F C     K++ LDL NN +   +P        L  L++A+N     +P  +   L S+
Sbjct: 445 -FRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL 499

Query: 481 QTLSLYNN 488
           Q + L++N
Sbjct: 500 QYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.0 bits (166), Expect = 5e-12
 Identities = 63/318 (19%), Positives = 110/318 (34%), Gaps = 24/318 (7%)

Query: 409 VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSG 468
           VL LS N+   S+ F   +    LE+LD+S+N L   +  C      L  L L+ N F  
Sbjct: 80  VLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-ISCCP--MASLRHLDLSFNDFD- 134

Query: 469 KIPKSMGF--LHSIQTLSLYNNSLI-GELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEG 525
            +P    F  L  +  L L        +L          IL+DL    + G     +   
Sbjct: 135 VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194

Query: 526 LPKLVVLSLKSNKFHGNIPFQ-VCQLSYIQILDLSLNNISGIIPK----------CLNNF 574
              ++ L    N          V  L ++Q+ ++ LN+ +                L N 
Sbjct: 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254

Query: 575 TGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVK---ILDF 631
           T    +++   ++     F  + +E+L   + N+ +T +  + E+  +   +K   I   
Sbjct: 255 TLQHIETTWKCSVKLFQFFWPRPVEYLN--IYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 632 SMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSS 691
                  +          +    LS ++             S  FL+ +QN F   +   
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 692 LCQLSRLSVMNLSYNNLS 709
              L RL  + L  N L 
Sbjct: 373 CSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 49/344 (14%), Positives = 116/344 (33%), Gaps = 31/344 (9%)

Query: 63  LKGTISPSLLKLYH-LRHLDLSENDFSGSRIPEFIGSLN--KLRYLSLSSAEFEGPIPSQ 119
           +KG  + SL      + HL    N     ++   + +L   +L  + L+    +  +   
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 120 LGNLSRLKYLDLSYINLNKSRDWLRII---DKLPSLRTLNLEHCHLPPIIPSDLLHLNFS 176
                    L+++  ++  +      +        +  LN+ +  +   I  +    + +
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 177 TSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGF 236
                 +   +N +       L+++ +++ +  L  +      +       S   L    
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 237 NELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
           N   +                S + +L  L L  N L       V     N+ +L   D 
Sbjct: 363 NVFTDSVFQ----------GCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDV 410

Query: 297 SFT----LKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPD 352
           S        +         ++++ L S  +     + L    +++VLD+ +  I  ++P 
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPK 467

Query: 353 WFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS--SIDISSN 394
               L   + + N+++N +K  +P+    FD  +S   I +  N
Sbjct: 468 DVTHLQA-LQELNVASNQLK-SVPDGV--FDRLTSLQYIWLHDN 507

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.0 bits (237), Expect = 2e-21
 Identities = 47/313 (15%), Positives = 98/313 (31%), Gaps = 62/313 (19%)

Query: 405 SNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANN 464
           +N  +   +      +   L          L+L +  L  + PD   +   L  +++   
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 465 FFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIG- 523
               ++P +M     ++TL+L  N L   LP+   S ++L  + +       E+P  +  
Sbjct: 115 GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 524 -------EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTG 576
                  +GL  L  L L+      ++P  +  L  ++ L +  + +S +    +++   
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLP- 229

Query: 577 MAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKL 636
                   L                                         + LD      
Sbjct: 230 -------KL-----------------------------------------EELDLRGCTA 241

Query: 637 SGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS 696
               P        L  L L   +    +   I +L  L+ LDL     +  +PS + QL 
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 697 RLSVMNLSYNNLS 709
              ++ +  +  +
Sbjct: 302 ANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.1 bits (219), Expect = 5e-19
 Identities = 50/313 (15%), Positives = 93/313 (29%), Gaps = 62/313 (19%)

Query: 431 KLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSI--QTLSLYNN 488
           +    D +    + R  +     +   + +             +          L L + 
Sbjct: 37  RHYNADRNRWHSAWRQAN----SNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSV 91

Query: 489 SLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVC 548
            L  + P      S L  M +   GL  E+P  + +    L  L+L  N     +P  + 
Sbjct: 92  PLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIA 147

Query: 549 QLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSS-SNLAITSNYTFERQGIEFLESYVDN 607
            L+ ++ L +        +P+ L +     +     NL                      
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL---------------------- 185

Query: 608 VVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPK 667
                              + L      +  ++P  I +L  L +L +  + L+  + P 
Sbjct: 186 -------------------QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 668 IDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG----TQLQSFNA 723
           I  L  L+ LDL     +   P      + L  + L   +    +PL     TQL+  + 
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 724 SVYAGNPELCGLP 736
               G   L  LP
Sbjct: 285 R---GCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 49/329 (14%), Positives = 102/329 (31%), Gaps = 42/329 (12%)

Query: 263 LDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQM 322
            + L   G++            LS  +  +  D +                 I   + + 
Sbjct: 14  RENLYFQGSTAL----RPYHDVLSQWQRHYNADRNRWHSAWR--QANSNNPQIETRTGRA 67

Query: 323 GPHFPKWLQ--TQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK------GK 374
                  L+  TQ     L++    +    PD  + LSH +    +    +        +
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAGLMELPDTMQQ 125

Query: 375 LPNLSLRFDPFSSSIDISSNYFEGL---IPPLPSNASVLNLSRN----KFSESISFLCSI 427
              L         ++ ++ N    L   I  L +    L++       +  E ++   + 
Sbjct: 126 FAGLE--------TLTLARNPLRALPASIASL-NRLRELSIRACPELTELPEPLASTDAS 176

Query: 428 NG----HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTL 483
                   L+ L L    +   LP        L  L + N+  S  +  ++  L  ++ L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234

Query: 484 SLYNNSLIGELPSFFKSCSQLILMDL-GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGN 542
            L   + +   P  F   + L  + L   + L   +P  I   L +L  L L+       
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHR-LTQLEKLDLRGCVNLSR 292

Query: 543 IPFQVCQLSYIQILDLSLNNISGIIPKCL 571
           +P  + QL    I+ +   ++   + +  
Sbjct: 293 LPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.7 bits (205), Expect = 3e-17
 Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 30/239 (12%)

Query: 66  TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSR 125
                  +L HL+H+ +         +P+ +     L  L+L+       +P+ + +L+R
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNR 151

Query: 126 LKYLDLSYINLNKS-------RDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTS 178
           L+ L +                D       L +L++L LE   +   +P+ + +L     
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANL----Q 206

Query: 179 SLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYL-GFN 237
           +L +L +  + L S++ P + ++   L  LDL       +    F     L+ L L   +
Sbjct: 207 NLKSLKIRNSPL-SALGPAIHHLPK-LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 238 ELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
            L  L              + R+ +L+ L L G      +     ++L     + +  +
Sbjct: 265 NLLTL-----------PLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.6 bits (197), Expect = 4e-16
 Identities = 55/360 (15%), Positives = 101/360 (28%), Gaps = 75/360 (20%)

Query: 337 EVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYF 396
           E L    +       D          + + +  H   +  N +       +   + +   
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQR-HYNADRNRWHSAWRQANSNNPQIETRTGRALKA--T 71

Query: 397 EGLIPPLPS-NASVLNLSRNKFS---ESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQ 452
             L+          L L         +    L       L+ + +    L   LPD   Q
Sbjct: 72  ADLLEDATQPGRVALELRSVPLPQFPDQAFRL-----SHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 453 FDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCS---------Q 503
           F  L  L+LA N     +P S+  L+ ++ LS+     + ELP    S            
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 504 LILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNI 563
           L  + L   G+   +P  I   L  L  L ++++     +   +  L  ++ LDL     
Sbjct: 185 LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTA 241

Query: 564 SGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTL 623
               P                                                       
Sbjct: 242 LRNYPPIFGGRA------------------------------------------------ 253

Query: 624 GLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQ 683
            L +++    + L  T+P +I  L  L  L+L       ++   I QL +   + +  + 
Sbjct: 254 PLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 9e-16
 Identities = 55/394 (13%), Positives = 100/394 (25%), Gaps = 98/394 (24%)

Query: 149 LPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVL 208
                 L  +           L       S     Y  + +   S   W    S+   + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVL-------SQWQRHYNADRNRWHS--AWRQANSNNPQIE 61

Query: 209 DLDSNLLQGSLLEPFDR--MVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDAL 266
                 L+ +  +  +         L L    L +                 R+  L  +
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLPQF-----------PDQAFRLSHLQHM 109

Query: 267 SLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHF 326
           ++    L  +       + + L+ L L  N          +P        + S       
Sbjct: 110 TIDAAGLMELPDT--MQQFAGLETLTLARNPLRA------LPAS------IASLN----- 150

Query: 327 PKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFS 386
                   ++  L I        +P+            +   +     L NL        
Sbjct: 151 --------RLRELSIRACPELTELPEPLA---------STDASGEHQGLVNLQ------- 186

Query: 387 SSIDISSNYFEGLIPPLPSNASVLNLSRNKFSE---SISFLCSINGHKLEFLDLSNNILS 443
                                  L L          SI+ L +     L+ L + N+ LS
Sbjct: 187 ----------------------SLRLEWTGIRSLPASIANLQN-----LKSLKIRNSPLS 219

Query: 444 GRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQ 503
             L        +L  L L         P   G    ++ L L + S +  LP      +Q
Sbjct: 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 504 LILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537
           L  +DL        +P+ I + LP   ++ +  +
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 57/405 (14%), Positives = 107/405 (26%), Gaps = 107/405 (26%)

Query: 120 LGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSS 179
             + S  + L          R +  ++ +       +    H       +  +    T +
Sbjct: 8   HHHSSGRENLYFQ--GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-NSNNPQIETRT 64

Query: 180 LGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNEL 239
             AL    + L  +            V L+L S  L     +   R+  L+ + +    L
Sbjct: 65  GRALKATADLLEDAT-------QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 240 EELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
            EL              + +   L+ L+L+ N L      ++ + +++L  L        
Sbjct: 117 MEL-----------PDTMQQFAGLETLTLARNPLR-----ALPASIASLNRL-------- 152

Query: 300 LKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSH 359
                                                  L I        +P+       
Sbjct: 153 -------------------------------------RELSIRACPELTELPEPLASTDA 175

Query: 360 TIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPS------NASVLNLS 413
           +     L N      L +L L +    S               LP+      N   L + 
Sbjct: 176 SGEHQGLVN------LQSLRLEWTGIRS---------------LPASIANLQNLKSLKIR 214

Query: 414 RNKFS---ESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKI 470
            +  S    +I  L       LE LDL         P  +     L  L L +      +
Sbjct: 215 NSPLSALGPAIHHLPK-----LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269

Query: 471 PKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLS 515
           P  +  L  ++ L L     +  LPS         ++ +  +  +
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 1e-12
 Identities = 37/295 (12%), Positives = 72/295 (24%), Gaps = 76/295 (25%)

Query: 456 LAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLS 515
              L    +         +                     +     +   +       L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGRALK 69

Query: 516 GEIPTWIGEG-LPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNF 574
                 + +   P  V L L+S       P Q  +LS++Q + +    +   +P  +  F
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 575 TGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMN 634
                     L                                         + L  + N
Sbjct: 127 A--------GL-----------------------------------------ETLTLARN 137

Query: 635 KLSGTIPEEIMDLVGLVALNLSRNNL---------TGQITPKIDQLKSLDFLDLSQNQFV 685
            L   +P  I  L  L  L++              +   + +   L +L  L L      
Sbjct: 138 PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

Query: 686 GGIPSSLCQLSRLSVMNLSYNNLSGKIPLG----TQLQSFNASVYAGNPELCGLP 736
             +P+S+  L  L  + +  + LS  +        +L+  +     G   L   P
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR---GCTALRNYP 246

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 55/340 (16%), Positives = 102/340 (30%), Gaps = 49/340 (14%)

Query: 93  PEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSY-----------------IN 135
                  +    L    +    P    L    R    D +                    
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 136 LNKSRDWLRIIDKL--PSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSS 193
               +    +++    P    L L    L P  P     L    S L  + +    L   
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRL----SHLQHMTIDAAGL-ME 118

Query: 194 IYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYL-GFNELEEL--FLGKNRLN 250
           +   +   +  L  L L  N L+ +L      +  LR L +    EL EL   L     +
Sbjct: 119 LPDTMQQFAG-LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 251 GTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPP- 309
           G     ++    L +L L    +  +      + L NLK+L + ++  +       + P 
Sbjct: 177 GEHQGLVN----LQSLRLEWTGIRSLPAS--IANLQNLKSLKIRNSPLSA------LGPA 224

Query: 310 ----FQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFN 365
                +L  + L  C    ++P     +  ++ L + D     T+P     L+  +   +
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ-LEKLD 283

Query: 366 LSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPS 405
           L       +LP+  +   P +  I +  +    L    P 
Sbjct: 284 LRGCVNLSRLPS-LIAQLPANCIILVPPHLQAQLDQHRPV 322

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 56/265 (21%), Positives = 96/265 (36%), Gaps = 35/265 (13%)

Query: 66  TISPSLLK-LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLS 124
               SL +  ++++ LDLS N  S       +    KL  L+LSS      +   L +LS
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLS 80

Query: 125 RLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALY 184
            L+ LDL+   + +       +   PS+ TL+  + ++  +  S              +Y
Sbjct: 81  TLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRVSCSRG-------QGKKNIY 126

Query: 185 LFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG-SLLEPFDRMVSLRTLYLGFNE----- 238
           L  N + + +        S++  LDL  N +   +  E      +L  L L +N      
Sbjct: 127 LANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185

Query: 239 -------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKAL 291
                  L+ L L  N+L   +         +  +SL  N L  +  E       NL+  
Sbjct: 186 GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHF 242

Query: 292 HLDDNSFTLKFSHDWIPPFQLIIIL 316
            L  N F      D+    Q +  +
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTV 267

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 47/282 (16%), Positives = 98/282 (34%), Gaps = 39/282 (13%)

Query: 428 NGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYN 487
           NG++ +   ++++ L   L         +  L L+ N  S      +     ++ L+L +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 488 NSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQV 547
           N  + E     +S S L  +DL  N +  E+        P +  L   +N     +    
Sbjct: 68  NV-LYETLD-LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS-RVSCSR 118

Query: 548 CQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDN 607
            Q    + + L+ N I+ +        + +       L +  N       I+ +      
Sbjct: 119 GQG--KKNIYLANNKITMLRDLDEGCRSRV-----QYLDLKLN------EIDTVNF---- 161

Query: 608 VVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPK 667
                     E  ++   ++ L+   N +   +  +++    L  L+LS N L   + P+
Sbjct: 162 ---------AELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPE 209

Query: 668 IDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709
                 + ++ L  N+ V  I  +L     L   +L  N   
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 51/364 (14%), Positives = 114/364 (31%), Gaps = 68/364 (18%)

Query: 228 SLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSN 287
           ++  +    N  +   +  + L   +       + +  L LSGN L+  ++ +  +  + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTK 59

Query: 288 LKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGIS 347
           L+ L+L  N              + +  L           + L                 
Sbjct: 60  LELLNLSSNVLYE------TLDLESLSTL-----------RTL----------------- 85

Query: 348 DTVPDWFWDLSHTIADFNLSNNHIKGKLPNL-SLRFDPFSSSIDISSNYFEGLIPPLPSN 406
                            +L+NN+++ +L    S+       ++  ++N    +       
Sbjct: 86  -----------------DLNNNYVQ-ELLVGPSIE------TLHAANNNISRVSCSRGQG 121

Query: 407 ASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSG-RLPDCWMQFDRLAVLSLANNF 465
              + L+ NK +  +  L      ++++LDL  N +      +     D L  L+L  NF
Sbjct: 122 KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEG 525
               +   +     ++TL L +N L   +   F+S + +  + L  N L   I   +   
Sbjct: 181 IY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-F 235

Query: 526 LPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNL 585
              L    L+ N FH     +       ++  ++   +  +  +     T          
Sbjct: 236 SQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 586 AITS 589
               
Sbjct: 295 CCED 298

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.0 bits (211), Expect = 4e-18
 Identities = 47/326 (14%), Positives = 101/326 (30%), Gaps = 34/326 (10%)

Query: 92  IPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPS 151
           I E   + N+ +   ++ +  +  + S   +   +K LDLS   L++       +     
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA--ADLAPFTK 59

Query: 152 LRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLD 211
           L  LNL    L   +  + L      S+L  L L  N +          +   +  L   
Sbjct: 60  LELLNLSSNVLYETLDLESL------STLRTLDLNNNYVQE------LLVGPSIETLHAA 107

Query: 212 SNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGN 271
           +N +           VS           + ++L  N++    +       ++  L L  N
Sbjct: 108 NNNI---------SRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 272 SLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQ 331
            +  V    + +    L+ L+L  N   +      +   +L  + L S ++        Q
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNF--IYDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQ 211

Query: 332 TQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDI 391
           +   +  + + +  +   +        + +  F+L  N        L   F        +
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQN-LEHFDLRGNGF--HCGTLRDFFSKNQRVQTV 267

Query: 392 SSNYFEGLIPPLPSNASVLNLSRNKF 417
           +    + L        +V  L     
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDF 676
           HE +      KI   + + L   +         +  L+LS N L+      +     L+ 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 677 LDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNAS 724
           L+LS N         L  LS L  ++L+ N +  ++ +G  +++ +A+
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAA 107

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 10/144 (6%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYL 129
                  +++LDL  N+       E   S + L +L+L        +  Q+   ++LK L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTL 196

Query: 130 DLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENS 189
           DLS    NK             +  ++L +  L  +I   L        +L    L  N 
Sbjct: 197 DLSS---NKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFS----QNLEHFDLRGNG 248

Query: 190 LSSSIYPWLFNISSKLVVLDLDSN 213
                    F+ + ++  +   + 
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 23/216 (10%), Positives = 65/216 (30%), Gaps = 60/216 (27%)

Query: 494 LPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYI 553
           +    ++ ++  +  +  + L  +    + +    +  L L  N         +   + +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 554 QILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWK 613
           ++L+LS N +         +   +     S L                            
Sbjct: 61  ELLNLSSNVLYE-----TLDLESL-----STL---------------------------- 82

Query: 614 GSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKS 673
                        + LD + N +      E++    +  L+ + NN++ +++      + 
Sbjct: 83  -------------RTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--GQG 121

Query: 674 LDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709
              + L+ N+            SR+  ++L  N + 
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 640 IPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLS 699
           I E   +        ++ ++L   +        ++  LDLS N       + L   ++L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 700 VMNLSYNNLSGKIPLG--TQLQSFNAS 724
           ++NLS N L   + L   + L++ + +
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLDLN 88

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 59/276 (21%), Positives = 100/276 (36%), Gaps = 32/276 (11%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN 135
               +     +     +P+ I +    R L+L   + +    +   +L  L+ L LS  +
Sbjct: 44  QFSKVICVRKNLR--EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 136 LNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIY 195
           +          + L +L TL L    L  I     ++L    S L  L+L  N +  SI 
Sbjct: 100 IRTIEI--GAFNGLANLNTLELFDNRLTTIPNGAFVYL----SKLKELWLRNNPI-ESIP 152

Query: 196 PWLFNISSKLVVLDL-DSNLLQGSLLEPFDRMVSLRTLYLGFN------------ELEEL 242
            + FN    L  LDL +   L       F+ + +LR L L               +L+EL
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212

Query: 243 FLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKF 302
            L  N L+         +  L  L +  + +  V+  + F  L +L  ++L  N+ TL  
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLP 271

Query: 303 SHDWIPPFQLIIILLGS------CQMGPHFPKWLQT 332
              + P   L  I L        C +      W++ 
Sbjct: 272 HDLFTPLHHLERIHLHHNPWNCNCDILW-LSWWIKD 306

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 63/294 (21%), Positives = 101/294 (34%), Gaps = 71/294 (24%)

Query: 150 PSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLD 209
            + R LNL    +  I  +   HL      L  L L  N + + I    FN  + L  L+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHL----RHLEILQLSRNHIRT-IEIGAFNGLANLNTLE 118

Query: 210 LDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALS 267
           L  N L  + +    F  +  L+ L+L  N +E +               +R+  L  L 
Sbjct: 119 LFDNRL--TTIPNGAFVYLSKLKELWLRNNPIESIPSY----------AFNRIPSLRRLD 166

Query: 268 LSG-NSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHF 326
           L     L+  ++E  F  LSNL+ L+L   +         IP    +I L          
Sbjct: 167 LGELKRLS-YISEGAFEGLSNLRYLNLAMCNLRE------IPNLTPLIKL---------- 209

Query: 327 PKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFS 386
                     + LD+S   +S   P  F  L H +    +  + I+              
Sbjct: 210 ----------DELDLSGNHLSAIRPGSFQGLMH-LQKLWMIQSQIQ-------------- 244

Query: 387 SSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNN 440
               I  N F+ L      +   +NL+ N  +  +        H LE + L +N
Sbjct: 245 ---VIERNAFDNL-----QSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 64/287 (22%), Positives = 99/287 (34%), Gaps = 59/287 (20%)

Query: 400 IPP-LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAV 458
           +P  + +N  +LNL  N+    I      +   LE L LS N +       +     L  
Sbjct: 58  VPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116

Query: 459 LSLANNFFSGKIPKSM-GFLHSIQTLSLYNNSLIGELPSF-FKSCSQLILMDLGKNGLSG 516
           L L +N  +  IP     +L  ++ L L NN  I  +PS+ F     L  +DLG+     
Sbjct: 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 517 EIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTG 576
            I     EGL  L  L+L               L  +  LDLS N++S I P    +F G
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIPNLT--PLIKLDELDLSGNHLSAIRP---GSFQG 229

Query: 577 MAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKL 636
           +                                                ++ L    +++
Sbjct: 230 LMH----------------------------------------------LQKLWMIQSQI 243

Query: 637 SGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQN 682
                    +L  LV +NL+ NNLT  +   +   L  L+ + L  N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.5 bits (191), Expect = 5e-15
 Identities = 50/227 (22%), Positives = 88/227 (38%), Gaps = 48/227 (21%)

Query: 74  LYHLRHLDLSENDFSGSRIPE--FIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDL 131
           L +L  L+L +N  +   IP   F+  L+KL+ L L +   E         +  L+ LDL
Sbjct: 111 LANLNTLELFDNRLT--TIPNGAFVY-LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167

Query: 132 SYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLS 191
             +            + L +LR LNL  C+L  I   +L  L                  
Sbjct: 168 GELKRLSYISE-GAFEGLSNLRYLNLAMCNLREI--PNLTPL------------------ 206

Query: 192 SSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNG 251
                       KL  LDL  N L       F  ++ L+ L++  ++++ +         
Sbjct: 207 -----------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA----- 250

Query: 252 TINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSF 298
                   +  L  ++L+ N+LT ++   +F+ L +L+ +HL  N +
Sbjct: 251 -----FDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 54/254 (21%), Positives = 94/254 (37%), Gaps = 27/254 (10%)

Query: 333 QNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDIS 392
            NQ   +      +   VPD    +S      NL  N I+  +   S +       + +S
Sbjct: 42  SNQFSKVICVRKNLR-EVPD---GISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLS 96

Query: 393 SNY--------FEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSG 444
            N+        F GL     +N + L L  N+ + +I     +   KL+ L L NN +  
Sbjct: 97  RNHIRTIEIGAFNGL-----ANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIES 150

Query: 445 RLPDCWMQFDRLAVLSLANNFFSGKIPKSMGF--LHSIQTLSLYNNSLIGELPSFFKSCS 502
                + +   L  L L        I +   F  L +++ L+L   +L  E+P+      
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLR-EIPNL-TPLI 207

Query: 503 QLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQV-CQLSYIQILDLSLN 561
           +L  +DL  N LS  I     +GL  L  L +  ++    I       L  +  ++L+ N
Sbjct: 208 KLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHN 265

Query: 562 NISGIIPKCLNNFT 575
           N++ +         
Sbjct: 266 NLTLLPHDLFTPLH 279

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 59/288 (20%), Positives = 89/288 (30%), Gaps = 75/288 (26%)

Query: 470 IPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKL 529
           +P   G   + + L+L+ N +     + FK    L ++ L +N +   I      GL  L
Sbjct: 58  VPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANL 114

Query: 530 VVLSLKSNKFHGNIPFQV-CQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAIT 588
             L L  N+    IP      LS ++ L L  N I  I                      
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESI---------------------- 151

Query: 589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFS-MNKLSGTIPEEI-MD 646
            +Y F R                           +  ++ LD   + +LS  I E     
Sbjct: 152 PSYAFNR---------------------------IPSLRRLDLGELKRLS-YISEGAFEG 183

Query: 647 LVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN 706
           L  L  LNL+  NL     P +  L  LD LDLS N      P S   L  L  + +  +
Sbjct: 184 LSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 707 NLSGKIPLGT---------------QLQSFNASVYAGNPELCGLPLRN 739
            +   I                    L      ++     L  + L +
Sbjct: 242 QIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 52/303 (17%), Positives = 90/303 (29%), Gaps = 83/303 (27%)

Query: 263 LDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQM 322
              L+L  N +  ++  + F  L +L+ L L  N                          
Sbjct: 66  TRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRN-------------------------- 98

Query: 323 GPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRF 382
                        I  ++             F  L++ +    L +N +           
Sbjct: 99  ------------HIRTIE----------IGAFNGLAN-LNTLELFDNRLT---------- 125

Query: 383 DPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNIL 442
                   I +  F  L     S    L L  N    SI          L  LDL     
Sbjct: 126 -------TIPNGAFVYL-----SKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKR 172

Query: 443 SGRLPDCWMQFD---RLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFK 499
              + +    F+    L  L+LA      +IP ++  L  +  L L  N L    P  F+
Sbjct: 173 LSYISE--GAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 500 SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQ-LSYIQILDL 558
               L  + + ++ +   I     + L  LV ++L  N     +P  +   L +++ + L
Sbjct: 229 GLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHL 286

Query: 559 SLN 561
             N
Sbjct: 287 HHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 69  PSLLKLYHLRHLDLSENDFSGSRIPE--FIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRL 126
           P+L  L  L  LDLS N    S I    F G L  L+ L +  ++ +    +   NL  L
Sbjct: 201 PNLTPLIKLDELDLSGNHL--SAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEH 159
             ++L++ NL        +   L  L  ++L H
Sbjct: 258 VEINLAHNNLTLLPH--DLFTPLHHLERIHLHH 288

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 43/245 (17%), Positives = 82/245 (33%), Gaps = 28/245 (11%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYL 129
           +   L  L  L LS+N      +PE       L+ L +   E      S    L+++  +
Sbjct: 95  AFAPLVKLERLYLSKNQL--KELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 150

Query: 130 DLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHL---PPIIPSDLLHLNFS---------- 176
           +L    L  S         +  L  + +   ++   P  +P  L  L+            
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 210

Query: 177 ----TSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTL 232
                ++L  L L  NS+ S++       +  L  L L++N L   +         ++ +
Sbjct: 211 SLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 233 YLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGV-VTESVFSELSNLKAL 291
           YL  N +  +        G      ++      +SL  N +    +  S F  +    A+
Sbjct: 269 YLHNNNISAIGSNDFCPPGY----NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

Query: 292 HLDDN 296
            L + 
Sbjct: 325 QLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 77/402 (19%), Positives = 119/402 (29%), Gaps = 117/402 (29%)

Query: 151 SLRTLNLEHCHL---PPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVV 207
            LR +      L   P  +P D   L           L  N ++  I    F     L  
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALL----------DLQNNKITE-IKDGDFKNLKNLHT 80

Query: 208 LDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLG--KNRLNGTINQWLSRMYKL 263
           L L +N +  S + P  F  +V L  LYL  N+L+EL     K                L
Sbjct: 81  LILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---------------L 123

Query: 264 DALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMG 323
             L +  N +T  V +SVF+ L+ +  + L  N          I                
Sbjct: 124 QELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS----SGIE--------------- 163

Query: 324 PHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFD 383
                  Q   ++  + I+D  I+         L+      +L  N I            
Sbjct: 164 ---NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE----LHLDGNKIT----------- 205

Query: 384 PFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILS 443
                  + +   +GL                              + L  L LS N +S
Sbjct: 206 ------KVDAASLKGL------------------------------NNLAKLGLSFNSIS 229

Query: 444 GRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSL--IGE----LPSF 497
                       L  L L NN    K+P  +     IQ + L+NN++  IG      P +
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 498 FKSCSQLILMDLGKNGLS-GEIPTWIGEGLPKLVVLSLKSNK 538
               +    + L  N +   EI       +     + L + K
Sbjct: 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 62/318 (19%), Positives = 108/318 (33%), Gaps = 65/318 (20%)

Query: 400 IPP-LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAV 458
           +P  LP + ++L+L  NK +  I      N   L  L L NN +S   P  +    +L  
Sbjct: 46  VPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104

Query: 459 LSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGL-SGE 517
           L L+ N    ++P+      ++Q L ++ N +     S F   +Q+I+++LG N L S  
Sbjct: 105 LYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 518 IPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGM 577
           I     +G+ KL  + +        IP  +     +  L L  N I+ +    L      
Sbjct: 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLN-- 216

Query: 578 AQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLS 637
                 NL                                           L  S N +S
Sbjct: 217 ------NL-----------------------------------------AKLGLSFNSIS 229

Query: 638 GTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQF------VGGIPSS 691
                 + +   L  L+L+ N L  ++   +   K +  + L  N            P  
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 692 LCQLSRLSVMNLSYNNLS 709
             + +  S ++L  N + 
Sbjct: 289 NTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 57/298 (19%), Positives = 102/298 (34%), Gaps = 72/298 (24%)

Query: 149 LPSLRTLNLEHCHLPPIIP------SDLLHLNFST-----------SSLGALYLFENSLS 191
           L +L TL L +  +  I P        L  L  S             +L  L + EN + 
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI- 133

Query: 192 SSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNE----------- 238
           + +   +FN  ++++V++L +N L+ S +E   F  M  L  + +               
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193

Query: 239 LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSF 298
           L EL L  N++       L  +  L  L LS NS++  V     +   +L+ LHL++N  
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKL 252

Query: 299 TLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLS 358
                                       P  L     I+V+ + +  IS    + F    
Sbjct: 253 V-------------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDF---C 284

Query: 359 HTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNK 416
               +   ++         +SL  +P     +I  + F  +        + + L   K
Sbjct: 285 PPGYNTKKAS------YSGVSLFSNPVQYW-EIQPSTFRCV-----YVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 76.2 bits (188), Expect = 5e-15
 Identities = 79/389 (20%), Positives = 122/389 (31%), Gaps = 104/389 (26%)

Query: 333 QNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDIS 392
           Q  + V+  SD G+   VP    DL    A  +L NN I                  +I 
Sbjct: 30  QCHLRVVQCSDLGLE-KVPK---DLPPDTALLDLQNNKIT-----------------EIK 68

Query: 393 SNYFEGLIPPLPSNASVLNLSRNKFS--ESISFLCSINGHKLEFLDLSNNILSGRLPDCW 450
              F+ L      N   L L  NK S     +F       KLE L LS N L   LP+  
Sbjct: 69  DGDFKNL-----KNLHTLILINNKISKISPGAFA---PLVKLERLYLSKNQLK-ELPE-- 117

Query: 451 MQFDRLAVLSLANNFFSGKIPKSMGF--LHSIQTLSLYNNSLIGEL--PSFFKSCSQLIL 506
                L  L +  N  + K+ KS+ F  L+ +  + L  N L         F+   +L  
Sbjct: 118 KMPKTLQELRVHENEIT-KVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 507 MDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQ-LSYIQILDLSLNNISG 565
           + +    ++  IP  +    P L  L L  NK    +     + L+ +  L LS N+IS 
Sbjct: 176 IRIADTNIT-TIPQGL---PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA 230

Query: 566 IIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGL 625
           +    L N   +                                                
Sbjct: 231 VDNGSLANTPHL------------------------------------------------ 242

Query: 626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTG------QITPKIDQLKSLDFLDL 679
            + L  + NKL   +P  + D   +  + L  NN++              +  S   + L
Sbjct: 243 -RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

Query: 680 SQNQF-VGGIPSSLCQ-LSRLSVMNLSYN 706
             N      I  S  + +   + + L   
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 47/240 (19%), Positives = 82/240 (34%), Gaps = 59/240 (24%)

Query: 479 SIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNK 538
               L L NN +       FK+   L  + L  N +S +I       L KL  L L  N+
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 539 FHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGI 598
               +P ++     +Q L +  N I+ +     + F G+ Q                   
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEITKVRK---SVFNGLNQ------------------- 146

Query: 599 EFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKL-SGTIPEEI-MDLVGLVALNLS 656
                                      + +++   N L S  I       +  L  + ++
Sbjct: 147 ---------------------------MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT 716
             N+T  I   +    SL  L L  N+      +SL  L+ L+ + LS+N++S  +  G+
Sbjct: 180 DTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGS 235

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 64/221 (28%)

Query: 500 SCSQLILMDLGKNGLSGEIPTWIGEGLPK-LVVLSLKSNKFHGNIPFQVCQLSYIQILDL 558
            C   ++      GL  ++P    + LP    +L L++NK           L  +  L L
Sbjct: 30  QCHLRVV-QCSDLGLE-KVP----KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 83

Query: 559 SLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHE 618
             N IS I P                                                  
Sbjct: 84  INNKISKISPGAFAP--------------------------------------------- 98

Query: 619 YRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFL 677
               L  ++ L  S N+L   +PE++     L  L +  N +T ++   + + L  +  +
Sbjct: 99  ----LVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVV 150

Query: 678 DLSQNQF-VGGIPS-SLCQLSRLSVMNLSYNNLSGKIPLGT 716
           +L  N     GI + +   + +LS + ++  N++  IP G 
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL 190

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.2 bits (224), Expect = 3e-19
 Identities = 51/242 (21%), Positives = 85/242 (35%), Gaps = 34/242 (14%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN 135
           + R+L+L EN+    +   F   L+ L  L L               L+ L  L+L    
Sbjct: 76  NTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-- 132

Query: 136 LNKSRDWLRIIDK-----LPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSL 190
            N     L +I       L  LR L L +  +  I       +     SL  L L E   
Sbjct: 133 -NW----LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV----PSLMRLDLGELKK 183

Query: 191 SSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE------------ 238
              I    F     L  L+L    +    +     +V L  L +  N             
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 239 --LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
             L++L++  ++++         +  L  L+L+ N+L+  +   +F+ L  L  LHL  N
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

Query: 297 SF 298
            +
Sbjct: 301 PW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.7 bits (189), Expect = 7e-15
 Identities = 67/291 (23%), Positives = 101/291 (34%), Gaps = 61/291 (20%)

Query: 400 IPP-LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAV 458
           +P  +PSN   LNL  N     I      + H LE L L  N +       +     L  
Sbjct: 69  VPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127

Query: 459 LSLANNFFSGKIPKSMGF--LHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSG 516
           L L +N+ +  IP    F  L  ++ L L NN +       F     L+ +DLG+     
Sbjct: 128 LELFDNWLT-VIPSGA-FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 517 EIPTWIGEGLPKLVVLSLKSNKFHGNIP-FQVCQLSYIQILDLSLNNISGIIPKCLNNFT 575
            I     EGL  L  L+L       ++P      L  ++ L++S N+   I P    +F 
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIK-DMPNLT--PLVGLEELEMSGNHFPEIRP---GSFH 239

Query: 576 GMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNK 635
           G+     S+L                                         K L    ++
Sbjct: 240 GL-----SSL-----------------------------------------KKLWVMNSQ 253

Query: 636 LSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQFV 685
           +S         L  LV LNL+ NNL+  +   +   L+ L  L L  N + 
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 65/294 (22%), Positives = 101/294 (34%), Gaps = 71/294 (24%)

Query: 150 PSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLD 209
            + R LNL   ++  I      HL      L  L L  NS+   I    FN  + L  L+
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHL----HHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLE 129

Query: 210 LDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALS 267
           L  N L  +++    F+ +  LR L+L  N +E +               +R+  L  L 
Sbjct: 130 LFDNWL--TVIPSGAFEYLSKLRELWLRNNPIESIPSY----------AFNRVPSLMRLD 177

Query: 268 LSG-NSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHF 326
           L     L   ++E  F  L NLK L+L   +         +P    ++ L          
Sbjct: 178 LGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKD------MPNLTPLVGL---------- 220

Query: 327 PKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFS 386
                     E L++S     +  P  F  LS  +    + N+ +               
Sbjct: 221 ----------EELEMSGNHFPEIRPGSFHGLSS-LKKLWVMNSQVS-------------- 255

Query: 387 SSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNN 440
               I  N F+GL     ++   LNL+ N  S S+          L  L L +N
Sbjct: 256 ---LIERNAFDGL-----ASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 46/175 (26%), Positives = 65/175 (37%), Gaps = 14/175 (8%)

Query: 66  TISPSLLK-LYHLRHLDLSENDFSGSRIPEFI-GSLNKLRYLSLSSAEFEGPIPSQ-LGN 122
            I     + L  LR L L  N      IP +    +  L  L L   +    I       
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182
           L  LKYL+L   N+      +  +  L  L  L +   H P I P     L    SSL  
Sbjct: 195 LFNLKYLNLGMCNIKD----MPNLTPLVGLEELEMSGNHFPEIRPGSFHGL----SSLKK 246

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN 237
           L++  + + S I    F+  + LV L+L  N L     + F  +  L  L+L  N
Sbjct: 247 LWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 63/348 (18%), Positives = 99/348 (28%), Gaps = 106/348 (30%)

Query: 150 PSLRTLNLEHCHL---PPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLV 206
                +      L   P  IPS+  +L           L EN++   I    F     L 
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSNTRYL----------NLMENNIQM-IQADTFRHLHHLE 102

Query: 207 VLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLD 264
           VL L  N +    +E   F+ + SL TL L  N L  +  G              + KL 
Sbjct: 103 VLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIPSG----------AFEYLSKLR 150

Query: 265 ALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGP 324
            L L  N +   +    F+ + +L  L L +                             
Sbjct: 151 ELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL---------------------------- 181

Query: 325 HFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDP 384
                     ++E +              F  L + +   NL   +I             
Sbjct: 182 ---------KKLEYIS----------EGAFEGLFN-LKYLNLGMCNI------------- 208

Query: 385 FSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSE--SISFLCSINGHKLEFLDLSNNIL 442
               +         L          L +S N F E    SF        L+ L + N+ +
Sbjct: 209 --KDMP----NLTPL-----VGLEELEMSGNHFPEIRPGSFH---GLSSLKKLWVMNSQV 254

Query: 443 SGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSL 490
           S    + +     L  L+LA+N  S         L  +  L L++N  
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 48/253 (18%), Positives = 88/253 (34%), Gaps = 25/253 (9%)

Query: 333 QNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDIS 392
            NQ   +  +  G+S  VP     +       NL  N+I+  +   + R       + + 
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLG 107

Query: 393 SNY--------FEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSG 444
            N         F GL     ++ + L L  N  +  I         KL  L L NN +  
Sbjct: 108 RNSIRQIEVGAFNGL-----ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIES 161

Query: 445 RLPDCWMQFDRLAVLSLANNFFSGKIPKSM-GFLHSIQTLSLYNNSLIGELPSFFKSCSQ 503
                + +   L  L L        I +     L +++ L+L   ++  ++P+       
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNL-TPLVG 219

Query: 504 LILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQV-CQLSYIQILDLSLNN 562
           L  +++  N    EI      GL  L  L + +++    I       L+ +  L+L+ NN
Sbjct: 220 LEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNN 277

Query: 563 ISGIIPKCLNNFT 575
           +S +         
Sbjct: 278 LSSLPHDLFTPLR 290

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 60/312 (19%), Positives = 96/312 (30%), Gaps = 90/312 (28%)

Query: 453 FDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN 512
            ++ + +       S ++P+  G   + + L+L  N++       F+    L ++ LG+N
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 513 GLSGEIPTWIGEGLPKLVVLSLKSNK--------FHGNIPFQVCQLSYIQILDLSLNNIS 564
            +  +I      GL  L  L L  N         F          LS ++ L L  N I 
Sbjct: 110 SIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY--------LSKLRELWLRNNPIE 160

Query: 565 GIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLG 624
            I                       +Y F R                           + 
Sbjct: 161 SI----------------------PSYAFNR---------------------------VP 171

Query: 625 LVKILDFS-MNKLSGTIPEEI-MDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQN 682
            +  LD   + KL   I E     L  L  LNL   N+     P +  L  L+ L++S N
Sbjct: 172 SLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGN 228

Query: 683 QFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT---------------QLQSFNASVYA 727
            F    P S   LS L  + +  + +S  I                    L S    ++ 
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

Query: 728 GNPELCGLPLRN 739
               L  L L +
Sbjct: 288 PLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 18/156 (11%)

Query: 66  TISPSLLK-LYHLRHLDLSE-NDFSGSRIPE--FIGSLNKLRYLSLSSAEFEGPIPSQLG 121
           +I       +  L  LDL E        I E  F G L  L+YL+L     +  +P+ L 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLE--YISEGAFEG-LFNLKYLNLGMCNIKD-MPN-LT 215

Query: 122 NLSRLKYLDLSYINLNK-SRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSL 180
            L  L+ L++S  +  +           L SL+ L + +  +  I  +    L    +SL
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFH---GLSSLKKLWVMNSQVSLIERNAFDGL----ASL 268

Query: 181 GALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQ 216
             L L  N+LSS +   LF     LV L L  N   
Sbjct: 269 VELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPWN 303

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 55/238 (23%), Positives = 86/238 (36%), Gaps = 34/238 (14%)

Query: 116 IPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNF 175
           +P  +   +  + + L    ++             +L  L L    L  I  +    L  
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPA--ASFRACRNLTILWLHSNVLARIDAAAFTGL-- 79

Query: 176 STSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLY 233
             + L  L L +N+   S+ P  F+   +L  L LD   LQ   L P  F  + +L+ LY
Sbjct: 80  --ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLY 135

Query: 234 LGFNE--------------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTE 279
           L  N               L  LFL  NR++    +    ++ LD L L  N +   V  
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP 194

Query: 280 SVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLG------SCQMGPHFPKWLQ 331
             F +L  L  L+L  N+ +   +    P   L  + L        C+  P    WLQ
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQ 251

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.6 bits (184), Expect = 8e-15
 Identities = 51/225 (22%), Positives = 79/225 (35%), Gaps = 42/225 (18%)

Query: 74  LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSY 133
             +L  L L  N  +                  + +A F G        L+ L+ LDLS 
Sbjct: 55  CRNLTILWLHSNVLA-----------------RIDAAAFTG--------LALLEQLDLSD 89

Query: 134 INLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSS 193
            N             L  L TL+L+ C L  + P     L    ++L  LYL +N+L  +
Sbjct: 90  -NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL----AALQYLYLQDNAL-QA 143

Query: 194 IYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTI 253
           +    F     L  L L  N +       F  + SL  L L  N +  +           
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA------- 196

Query: 254 NQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSF 298
                 + +L  L L  N+L+  +     + L  L+ L L+DN +
Sbjct: 197 ---FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 54/291 (18%), Positives = 97/291 (33%), Gaps = 83/291 (28%)

Query: 400 IPP-LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAV 458
           +P  +P+ +  + L  N+ S  +          L  L L +N+L+               
Sbjct: 26  VPVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA--------------- 69

Query: 459 LSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPS-FFKSCSQLILMDLGKNGLSGE 517
             +    F+G        L  ++ L L +N+ +  +    F    +L  + L + GL  E
Sbjct: 70  -RIDAAAFTG--------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-E 119

Query: 518 IPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQ-LSYIQILDLSLNNISGIIPKCLNNFTG 576
           +   +  GL  L  L L+ N     +P    + L  +  L L  N IS +       F G
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPE---RAFRG 175

Query: 577 MAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKL 636
           +      +L                                           L    N++
Sbjct: 176 L-----HSL-----------------------------------------DRLLLHQNRV 189

Query: 637 SGTIPEEI-MDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQFV 685
           +  +      DL  L+ L L  NNL+  +  +    L++L +L L+ N +V
Sbjct: 190 A-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 48/265 (18%), Positives = 77/265 (29%), Gaps = 58/265 (21%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSR 259
            I +    + L  N +       F    +L  L+L  N L  +               + 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA----------AFTG 78

Query: 260 MYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGS 319
           +  L+ L LS N+    V  + F  L  L  LHLD            +            
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE------LG----------- 121

Query: 320 CQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLS 379
                  P   +    ++ L + D  +     D F DL + +    L  N I        
Sbjct: 122 -------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRIS------- 166

Query: 380 LRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSN 439
                      +    F GL      +   L L +N+ +  +      +  +L  L L  
Sbjct: 167 ----------SVPERAFRGL-----HSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFA 210

Query: 440 NILSGRLPDCWMQFDRLAVLSLANN 464
           N LS    +       L  L L +N
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 44/173 (25%), Positives = 64/173 (36%), Gaps = 8/173 (4%)

Query: 66  TISPSLLK-LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLS 124
            I  +    L  L  LDLS+N    S  P     L +L  L L     +   P     L+
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 125 RLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALY 184
            L+YL L    L    D       L +L  L L    +  +       L     SL  L 
Sbjct: 130 ALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISSVPERAFRGL----HSLDRLL 183

Query: 185 LFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN 237
           L +N + + ++P  F    +L+ L L +N L     E    + +L+ L L  N
Sbjct: 184 LHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 46/224 (20%), Positives = 75/224 (33%), Gaps = 31/224 (13%)

Query: 356 DLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRN 415
            +        L  N I                   + +  F         N ++L L  N
Sbjct: 29  GIPAASQRIFLHGNRIS-----------------HVPAASFRAC-----RNLTILWLHSN 66

Query: 416 KFSESISFLCSINGHKLEFLDLSNNILSGRLP-DCWMQFDRLAVLSLANNFFSGKIPKSM 474
             +  I          LE LDLS+N     +    +    RL  L L       ++   +
Sbjct: 67  VLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124

Query: 475 -GFLHSIQTLSLYNNSLIGELPS-FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVL 532
              L ++Q L L +N+ +  LP   F+    L  + L  N +S  +P     GL  L  L
Sbjct: 125 FRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRL 182

Query: 533 SLKSNKFHGNIPFQVCQ-LSYIQILDLSLNNISGIIPKCLNNFT 575
            L  N+   ++     + L  +  L L  NN+S +  + L    
Sbjct: 183 LLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 60/278 (21%), Positives = 91/278 (32%), Gaps = 71/278 (25%)

Query: 475 GFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSL 534
           G   + Q + L+ N +     + F++C  L ++ L  N L+  I      GL  L  L L
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 535 KSNKFHGNIP---FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNY 591
             N    ++    F    L  +  L L    +  + P     F G+     + L      
Sbjct: 88  SDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGL---FRGL-----AAL------ 131

Query: 592 TFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEI-MDLVGL 650
                                              + L    N L   +P++   DL  L
Sbjct: 132 -----------------------------------QYLYLQDNALQ-ALPDDTFRDLGNL 155

Query: 651 VALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709
             L L  N ++  +  +    L SLD L L QN+     P +   L RL  + L  NNLS
Sbjct: 156 THLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 710 GKIPLG-----TQLQSFNASVYAGNPELCG---LPLRN 739
             +P         LQ    +    NP +C     PL  
Sbjct: 215 -ALPTEALAPLRALQYLRLN---DNPWVCDCRARPLWA 248

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 42/261 (16%), Positives = 66/261 (25%), Gaps = 56/261 (21%)

Query: 500 SCSQLILMDLGKNGLSGEIPTWIGEGLPK-LVVLSLKSNKFHGNIPFQVCQLSYIQILDL 558
                +     + GL   +P     G+P     + L  N+              + IL L
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPV----GIPAASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 559 SLNNISGIIPKCLNNFTGMAQKS-SSNLAITS--NYTFERQGIEFLESYVDNVVLTWKGS 615
             N ++ I          + Q   S N  + S    TF                      
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-------------------- 103

Query: 616 QHEYRSTLGLVKILDFSMNKLSGTIPEEI-MDLVGLVALNLSRNNLTGQITPKI-DQLKS 673
                  LG +  L      L   +   +   L  L  L L  N L   +       L +
Sbjct: 104 -------LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGN 154

Query: 674 LDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT---------------QL 718
           L  L L  N+       +   L  L  + L  N ++  +                    L
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNL 213

Query: 719 QSFNASVYAGNPELCGLPLRN 739
            +      A    L  L L +
Sbjct: 214 SALPTEALAPLRALQYLRLND 234

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.7 bits (212), Expect = 2e-18
 Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 16/228 (7%)

Query: 79  HLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQ---LGNLSRLKYLDLSYIN 135
            L   + +    +  + I SL  L+ L++ +A     I      +  +S L+ L L  + 
Sbjct: 48  LLKRVDTEADLGQFTDIIKSL-SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 136 LNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIY 195
           +  +     +    P L  LNL +               +    L  L +   + S +  
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI-AQAHSLNFS 165

Query: 196 PWLFNISSKLVVLDLDSNLLQGSLLEP----FDRMVSLRTLYLGFNELEELFLGKNRLNG 251
                +   L  LDL  N   G           +  +L+ L L    +          +G
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-------ETPSG 218

Query: 252 TINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
             +   +   +L  L LS NSL            S L +L+L      
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 40/226 (17%), Positives = 78/226 (34%), Gaps = 20/226 (8%)

Query: 358 SHTIADFNLSNNHIKGKLPNLSLRFDPFS--SSIDISSNYFEGLIPPLPSNAS-----VL 410
           S ++    +    I  ++   +LR    S    + + +    G  PP    A+     +L
Sbjct: 67  SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 411 NLSRNKFSESISFLCSINGHK---LEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFS 467
           NL    ++   ++L  +       L+ L ++         +    F  L+ L L++N   
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 468 GKIPKS----MGFLHSIQTLSLYNN---SLIGELPSFFKSCSQLILMDLGKNGLSGEIPT 520
           G+             ++Q L+L N    +  G   +   +  QL  +DL  N L      
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 521 WIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI 566
              +   +L  L+L                + + +LDLS N +   
Sbjct: 247 PSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 4e-14
 Identities = 60/337 (17%), Positives = 97/337 (28%), Gaps = 58/337 (17%)

Query: 384 PFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILS 443
           P  SS        +  +     +   L    +  ++   F   I    L+ L +    + 
Sbjct: 22  PDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIP 81

Query: 444 GRLPDCWMQFD---RLAVLSLANNFFSGKIPKSMGFLH--SIQTLSLYNNSLIGELPSFF 498
            R+    ++      L  L+L N   +G  P  +       +  L+L N S      ++ 
Sbjct: 82  SRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWL 140

Query: 499 KSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDL 558
               Q +                     P L VLS+           QV     +  LDL
Sbjct: 141 AELQQWL--------------------KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180

Query: 559 SLNNISGIIP----KCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKG 614
           S N   G        C   F  +   +  N  + +                         
Sbjct: 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ----------- 229

Query: 615 SQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVG-LVALNLSRNNLTGQITPKIDQLKS 673
                      ++ LD S N L         D    L +LNLS   L  Q+   +     
Sbjct: 230 -----------LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--K 275

Query: 674 LDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSG 710
           L  LDLS N+     PS   +L ++  ++L  N    
Sbjct: 276 LSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 61/354 (17%), Positives = 105/354 (29%), Gaps = 75/354 (21%)

Query: 347 SDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSN 406
           SD  PDW    +   A           +L       +     +D  ++  +        +
Sbjct: 18  SDPKPDWSSAFNCLGA--------ADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS 69

Query: 407 ASVLNLSRNKFSESI--SFLCSINGHKLEFLDLSNNILSGRLPDCWMQFD--RLAVLSLA 462
              L +   +    I    L  +    L+ L L N  ++G  P   ++     L +L+L 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 463 NNFFSG---KIPKSMGFLH-SIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEI 518
           N  ++     + +   +L   ++ LS+     +       +    L  +DL  N   GE 
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 519 P---TWIGEGLPKLVVLSLKSNKFH---GNIPFQVCQLSYIQILDLSLNNISGIIPKCLN 572
                      P L VL+L++       G           +Q LDLS N++         
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG---- 245

Query: 573 NFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFS 632
                +    S L                                           L+ S
Sbjct: 246 ---APSCDWPSQL-----------------------------------------NSLNLS 261

Query: 633 MNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVG 686
              L   +P+ +     L  L+LS N L     P  D+L  +  L L  N F+ 
Sbjct: 262 FTGLK-QVPKGL--PAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 55/308 (17%), Positives = 94/308 (30%), Gaps = 42/308 (13%)

Query: 120 LGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSS 179
            G    L+YL L  ++          I K  SL+ L +    +P  I    L +    S 
Sbjct: 39  YGGGRSLEYL-LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV-LGISG 96

Query: 180 LGALYLFENSLSSSIYPWLFNIS-SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE 238
           L  L L    ++ +  P L   +   L +L+L +           +    L+        
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG------ 150

Query: 239 LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTG---VVTESVFSELSNLKALHLDD 295
           L+ L + +        + +     L  L LS N   G   +++     +   L+ L L +
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 296 NSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFW 355
                                                + Q++ LD+S   + D       
Sbjct: 211 AGME---------------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 356 DLSHTIADFNLSNNHIKGKLPNL--SLRFDPFSSSIDISSNYFEGLIPPLP-SNASVLNL 412
           D    +   NLS   +K     L   L        +D+S N  +    P        L+L
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKGLPAKLS------VLDLSYNRLDRNPSPDELPQVGNLSL 303

Query: 413 SRNKFSES 420
             N F +S
Sbjct: 304 KGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 629 LDFSMNKLSGTIPEEIMDLVG--LVALNLSRNNLTGQITPKID----QLKSLDFLDLSQN 682
           L     +++GT P  +++  G  L  LNL   +   +     +        L  L ++Q 
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 683 QFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQL 718
             +      +     LS ++LS N   G+  L + L
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 64/309 (20%), Positives = 110/309 (35%), Gaps = 51/309 (16%)

Query: 403 LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLA 462
           L +  +VLN+  +     ++ L       +  L + +N L+  LP        L  L ++
Sbjct: 38  LNNGNAVLNVGESG----LTTLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVS 89

Query: 463 NNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWI 522
            N  +  +P     L  +   S     L             L  + +  N L+  +P   
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLP--- 137

Query: 523 GEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSS 582
               P L  LS+  N+   ++P    +L     L    N ++  +P   +          
Sbjct: 138 -VLPPGLQELSVSDNQL-ASLPALPSEL---CKLWAYNNQLTS-LPMLPSGLQ------- 184

Query: 583 SNLAITSNY-TFERQGIEFLES-YVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTI 640
             L+++ N           L   +  N  LT         +    +K L  S N+L+ ++
Sbjct: 185 -ELSVSDNQLASLPTLPSELYKLWAYNNRLT------SLPALPSGLKELIVSGNRLT-SL 236

Query: 641 PEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSV 700
           P    +   L  L +S N LT  +      L S   L + +NQ    +P SL  LS  + 
Sbjct: 237 PVLPSE---LKELMVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETT 288

Query: 701 MNLSYNNLS 709
           +NL  N LS
Sbjct: 289 VNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 72/419 (17%), Positives = 125/419 (29%), Gaps = 101/419 (24%)

Query: 151 SLRTLNLEHCHL---PPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVV 207
               LN+    L   P  +P+ +  L    ++L        SL +           +L  
Sbjct: 41  GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNL-------TSLPALP--------PELRT 85

Query: 208 LDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALS 267
           L++  N L  SL      ++ L         L  L  G                 L  L 
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-----------------LCKLW 127

Query: 268 LSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFP 327
           + GN LT     S+      L+ L + DN                              P
Sbjct: 128 IFGNQLT-----SLPVLPPGLQELSVSDNQLA-------------------------SLP 157

Query: 328 KWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNL--SLRFDPF 385
                  ++  L   +  ++ ++P     L       ++S+N +   LP L   L     
Sbjct: 158 ALPS---ELCKLWAYNNQLT-SLPMLPSGLQE----LSVSDNQLA-SLPTLPSELY---- 204

Query: 386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGR 445
              +   +N    L P LPS    L +S N+ +             L+ L +S N L+  
Sbjct: 205 --KLWAYNNRLTSL-PALPSGLKELIVSGNRLTSLPVLPSE-----LKELMVSGNRLT-S 255

Query: 446 LPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLI 505
           LP        L  LS+  N  + ++P+S+  L S  T++L  N L  E     ++  ++ 
Sbjct: 256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERT--LQALREIT 308

Query: 506 LMDLGKNGLSGEIPTWIGEGLPKLVVL--SLKSNKFHGNIPFQVCQLSYIQILDLSLNN 562
                   +        G   P+         ++        +        +     N 
Sbjct: 309 SAPGYSGPII--RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.3 bits (198), Expect = 1e-15
 Identities = 77/397 (19%), Positives = 136/397 (34%), Gaps = 82/397 (20%)

Query: 334 NQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNL--SLRFDPFSSSIDI 391
           N   VL++ ++G++ T+PD    L   I    + +N++   LP L   LR      ++++
Sbjct: 40  NGNAVLNVGESGLT-TLPD---CLPAHITTLVIPDNNLT-SLPALPPELR------TLEV 88

Query: 392 SSNYFEGLIPPLPSNAS---VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPD 448
           S N    L P LP       + +          S LC         L +  N L+  LP 
Sbjct: 89  SGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCK--------LWIFGNQLT-SLPV 138

Query: 449 CWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMD 508
                  L  LS+++N  +  +P     L     L  YNN L   LP      S L  + 
Sbjct: 139 ---LPPGLQELSVSDNQLA-SLPALPSEL---CKLWAYNNQLT-SLP---MLPSGLQELS 187

Query: 509 LGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIP 568
           +  N L+  +PT       +L  L   +N+   ++P     L   + L +S N ++ + P
Sbjct: 188 VSDNQLA-SLPTLPS----ELYKLWAYNNRLT-SLPALPSGL---KELIVSGNRLTSL-P 237

Query: 569 KCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKI 628
              +            L ++ N                   LT              +  
Sbjct: 238 VLPSELK--------ELMVSGNR------------------LT------SLPMLPSGLLS 265

Query: 629 LDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGI 688
           L    N+L+  +PE ++ L     +NL  N L+ +    + ++ S         +F    
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 689 PS--SLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNA 723
            S     +   L+  +       G+     +   F  
Sbjct: 325 ASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 54/255 (21%), Positives = 84/255 (32%), Gaps = 55/255 (21%)

Query: 66  TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKL--RYLSLSSAEFEGPIPSQLGNL 123
           T+   L    H+  L + +N+ +   +P     L  L      L+S      +P     L
Sbjct: 54  TLPDCLPA--HITTLVIPDNNLT--SLPALPPELRTLEVSGNQLTS------LPVLPPGL 103

Query: 124 SRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHL---PPIIPS----DLLHLNFS 176
             L        +L               L  L +    L   P + P      +     +
Sbjct: 104 LELSIFSNPLTHLPAL---------PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA 154

Query: 177 T-----SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRT 231
           +     S L  L+ + N L+S     L  + S L  L +  N L  SL      +  L  
Sbjct: 155 SLPALPSELCKLWAYNNQLTS-----LPMLPSGLQELSVSDNQLA-SLPTLPSELYKLWA 208

Query: 232 LYLGFNE-------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSE 284
                         L+EL +  NRL  ++    S   +L  L +SGN LT     S+   
Sbjct: 209 YNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPS---ELKELMVSGNRLT-----SLPML 259

Query: 285 LSNLKALHLDDNSFT 299
            S L +L +  N  T
Sbjct: 260 PSGLLSLSVYRNQLT 274

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.4 bits (193), Expect = 4e-15
 Identities = 61/329 (18%), Positives = 112/329 (34%), Gaps = 76/329 (23%)

Query: 262 KLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQ 321
               L++  + LT +         +++  L + DN+ T                      
Sbjct: 41  GNAVLNVGESGLTTLPDCL----PAHITTLVIPDNNLT---------------------- 74

Query: 322 MGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLR 381
                P       ++  L++S   ++ ++P     L   ++ F+    H+      L   
Sbjct: 75  ---SLPALP---PELRTLEVSGNQLT-SLPVLPPGLLE-LSIFSNPLTHLPALPSGLC-- 124

Query: 382 FDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSE---SISFLCSINGH-------- 430
                  + I  N    L P LP     L++S N+ +      S LC +  +        
Sbjct: 125 ------KLWIFGNQLTSL-PVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP 177

Query: 431 ----KLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLY 486
                L+ L +S+N L+  LP        L  L   NN  +  +P        ++ L + 
Sbjct: 178 MLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPALPS---GLKELIVS 229

Query: 487 NNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQ 546
            N L   LP      S+L  + +  N L+  +P         L+ LS+  N+    +P  
Sbjct: 230 GNRL-TSLPV---LPSELKELMVSGNRLT-SLPMLPS----GLLSLSVYRNQLT-RLPES 279

Query: 547 VCQLSYIQILDLSLNNISGIIPKCLNNFT 575
           +  LS    ++L  N +S    + L   T
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREIT 308

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.2 bits (169), Expect = 3e-12
 Identities = 50/294 (17%), Positives = 88/294 (29%), Gaps = 85/294 (28%)

Query: 431 KLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSL 490
               L++  + L+  LPDC      +  L + +N  +  +P     L   +TL +  N L
Sbjct: 41  GNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQL 93

Query: 491 IGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQL 550
              LP       +L +       L              L  L +  N+   ++P     L
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLT-SLPVLPPGL 143

Query: 551 SYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVL 610
              Q L +S +N    +P   +                                      
Sbjct: 144 ---QELSVS-DNQLASLPALPSE------------------------------------- 162

Query: 611 TWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQ 670
                          +  L    N+L+ ++P       GL  L++S N L   +     +
Sbjct: 163 ---------------LCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPSE 202

Query: 671 LKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNAS 724
           L  L       N+    +P+    L  L    +S N L+    L ++L+    S
Sbjct: 203 LYKLW---AYNNRLTS-LPALPSGLKEL---IVSGNRLTSLPVLPSELKELMVS 249

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.4 bits (149), Expect = 8e-10
 Identities = 42/250 (16%), Positives = 79/250 (31%), Gaps = 59/250 (23%)

Query: 476 FLHSIQTLSLYNNSLIGELP-SFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSL 534
             +    L++  + L   LP       + L    +  N L+  +P       P+L  L +
Sbjct: 38  LNNGNAVLNVGESGL-TTLPDCLPAHITTL---VIPDNNLT-SLP----ALPPELRTLEV 88

Query: 535 KSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFE 594
             N+   ++P     L  + I    L ++  +                            
Sbjct: 89  SGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------------------------- 121

Query: 595 RQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALN 654
             G+  L  ++    LT              ++ L  S N+L+ ++P    +L     L 
Sbjct: 122 --GLCKL--WIFGNQLT------SLPVLPPGLQELSVSDNQLA-SLPALPSELC---KLW 167

Query: 655 LSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL 714
              N LT  +      L+ L    +S NQ    +P+   +L +L   N    +L      
Sbjct: 168 AYNNQLT-SLPMLPSGLQELS---VSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALP-- 220

Query: 715 GTQLQSFNAS 724
            + L+    S
Sbjct: 221 -SGLKELIVS 229

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 6e-16
 Identities = 48/238 (20%), Positives = 80/238 (33%), Gaps = 17/238 (7%)

Query: 66  TISPSLL-KLYHLRHLDLSENDFSGSRIPE--FIGSLNKLRYLSLSSAEFEGPIPSQL-G 121
            IS S L +  +L+ L L+ N    + I E  F   L  L +L LS       + S    
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSS-LGSLEHLDLSYNYLSN-LSSSWFK 121

Query: 122 NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLG 181
            LS L +L+L         +   +   L  L+ L + +      I           + L 
Sbjct: 122 PLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFA---GLTFLE 177

Query: 182 ALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEE 241
            L +  + L  S  P        +  L L        L    D   S+  L L   +L+ 
Sbjct: 178 ELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 242 LFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
                + L+      L + +    + ++  SL  V    + +++S L  L    N   
Sbjct: 237 FHF--SELSTGETNSLIKKFTFRNVKITDESLFQV--MKLLNQISGLLELEFSRNQLK 290

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 21/243 (8%)

Query: 73  KLYHLRHLDLSENDFSGSRIPE--FIGSLNKLRYLSLSSAEFEG-PIPSQLGNLSRLKYL 129
            L  L HLDLS N  S   +    F   L+ L +L+L    ++     S   +L++L+ L
Sbjct: 98  SLGSLEHLDLSYNYLS--NLSSSWFKP-LSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 130 DLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENS 189
            +  ++        +    L  L  L ++   L    P  L  +     ++  L L    
Sbjct: 155 RVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSI----QNVSHLILHMKQ 209

Query: 190 LSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRL 249
               +     +++S +  L+L    L            +   +         + +    L
Sbjct: 210 H-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK--FTFRNVKITDESL 266

Query: 250 NGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT-----LKFSH 304
              + + L+++  L  L  S N L   V + +F  L++L+ + L  N +      + +  
Sbjct: 267 F-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 324

Query: 305 DWI 307
            W+
Sbjct: 325 RWL 327

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 8e-15
 Identities = 55/303 (18%), Positives = 105/303 (34%), Gaps = 26/303 (8%)

Query: 384 PFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILS 443
             +     SS     +   L      L+LS N+ +  IS         L+ L L++N ++
Sbjct: 31  DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN 89

Query: 444 GRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGF--LHSIQTLSLYNNSLIGELP-SFFKS 500
               D +     L  L L+ N+ S  +  S  F  L S+  L+L  N        S F  
Sbjct: 90  TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSW-FKPLSSLTFLNLLGNPYKTLGETSLFSH 147

Query: 501 CSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSL 560
            ++L ++ +G      +I      GL  L  L + ++      P  +  +  +  L L +
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 561 NNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYR 620
                ++   ++  + +      +  + + +  E    E                     
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS-----------------L 250

Query: 621 STLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDL 679
                 + +  +   L   + + +  + GL+ L  SRN L   +   I D+L SL  + L
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWL 308

Query: 680 SQN 682
             N
Sbjct: 309 HTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 58/303 (19%), Positives = 104/303 (34%), Gaps = 41/303 (13%)

Query: 166 IPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--F 223
           IPS L      T ++ +L L  N ++  I          L  L L SN +    +E   F
Sbjct: 46  IPSGL------TEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGIN--TIEEDSF 96

Query: 224 DRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFS 283
             + SL  L L +N L  L             W   +  L  L+L GN    +   S+FS
Sbjct: 97  SSLGSLEHLDLSYNYLSNLSSS----------WFKPLSSLTFLNLLGNPYKTLGETSLFS 146

Query: 284 ELSNLKALHLDDNSFTLKFSHDWIPPF-QLIIILLGSCQMGPHFPKWLQTQNQIEVLDIS 342
            L+ L+ L + +     K           L  + + +  +  + PK L++   +  L + 
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 343 DAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPP 402
                  + + F D++ ++    L +  +     +            ++S+     LI  
Sbjct: 207 MKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFS------------ELSTGETNSLIKK 253

Query: 403 LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQ-FDRLAVLSL 461
                  + ++     + +  L       L  L+ S N L   +PD        L  + L
Sbjct: 254 F--TFRNVKITDESLFQVMKLL--NQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWL 308

Query: 462 ANN 464
             N
Sbjct: 309 HTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 59/290 (20%), Positives = 101/290 (34%), Gaps = 49/290 (16%)

Query: 124 SRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGAL 183
             +K LDLS   +    +    + +  +L+ L L    +  I       L     SL  L
Sbjct: 52  EAVKSLDLSNNRITYISN--SDLQRCVNLQALVLTSNGINTIEEDSFSSL----GSLEHL 105

Query: 184 YLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNE--- 238
            L  N L S++    F   S L  L+L  N  + +L E   F  +  L+ L +G  +   
Sbjct: 106 DLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 239 ------------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELS 286
                       LEEL +  + L     + L  +  +  L L       ++ E      S
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS 222

Query: 287 NLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGI 346
           +++ L L D           +  F    +  G         K    +N    + I+D  +
Sbjct: 223 SVECLELRDT---------DLDTFHFSELSTGETNS---LIKKFTFRN----VKITDESL 266

Query: 347 SDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS--SIDISSN 394
              V      +S  + +   S N +K  +P+    FD  +S   I + +N
Sbjct: 267 F-QVMKLLNQISG-LLELEFSRNQLKS-VPDGI--FDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 52/341 (15%), Positives = 105/341 (30%), Gaps = 75/341 (21%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSR 259
            ++  +  LDL +N +         R V+L+ L L  N +  +               S 
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED----------SFSS 98

Query: 260 MYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGS 319
           +  L+ L LS N L+  ++ S F  LS+L  L+L  N +        +    L   L   
Sbjct: 99  LGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT------LGETSLFSHLTKL 151

Query: 320 CQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLS 379
             +       +   +    +              F  L+       +  + ++       
Sbjct: 152 QIL------RVGNMDTFTKIQ----------RKDFAGLTFLEE-LEIDASDLQ------- 187

Query: 380 LRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSN 439
                            + +      N S L L   +    +  +       +E L+L +
Sbjct: 188 ----------SYEPKSLKSI-----QNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRD 231

Query: 440 NILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFK 499
             L          F  L+               S+    + + + + + SL  ++     
Sbjct: 232 TDLD------TFHFSELSTGETN----------SLIKKFTFRNVKITDESLF-QVMKLLN 274

Query: 500 SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH 540
             S L+ ++  +N L   +P  I + L  L  + L +N + 
Sbjct: 275 QISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 52/314 (16%), Positives = 98/314 (31%), Gaps = 85/314 (27%)

Query: 263 LDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQM 322
           + +L LS N +T  ++ S      NL+AL L  N                          
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSN-------------------------- 86

Query: 323 GPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRF 382
                        I  ++           D F  L   +   +LS N++           
Sbjct: 87  ------------GINTIE----------EDSFSSLGS-LEHLDLSYNYLS---------- 113

Query: 383 DPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNIL 442
                  ++SS++F+ L     S+ + LNL  N +          +  KL+ L + N   
Sbjct: 114 -------NLSSSWFKPL-----SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 443 SGRLPDCWMQFDRLA---VLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFK 499
             ++      F  L     L +  +      PKS+  + ++  L L+    I  L  F  
Sbjct: 162 FTKIQR--KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219

Query: 500 SCSQLILMDLGKNGLSGEIPTWIGEG-------LPKLVVLSLKSNKFHGNIPFQVCQLSY 552
             S +  ++L    L     + +  G             + +        +   + Q+S 
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISG 278

Query: 553 IQILDLSLNNISGI 566
           +  L+ S N +  +
Sbjct: 279 LLELEFSRNQLKSV 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPE-FIGSLNKLRYLSLSSAEFEGPIPSQL-----GNL 123
           SL  + ++ HL L         + E F+   + +  L L   + +    S+L      +L
Sbjct: 193 SLKSIQNVSHLILHMKQHI--LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 124 SRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGAL 183
            +        I        +++++++  L  L      L   +P  +       +SL  +
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPDGIFD---RLTSLQKI 306

Query: 184 YLFENSL 190
           +L  N  
Sbjct: 307 WLHTNPW 313

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 56/308 (18%), Positives = 106/308 (34%), Gaps = 54/308 (17%)

Query: 384 PFSSSIDISSNYFEGLIPPLPSNASV-------LNLSRNKFSESISFLCSINGHKLEFLD 436
           P +++  +S N F   I    ++            L     +E++S L     ++   L 
Sbjct: 6   PINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQ 65

Query: 437 LSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPS 496
           L+   LS  LPD      ++ VL +  N     +P+    L   + L   +N L   LP 
Sbjct: 66  LNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASL---EYLDACDNRLS-TLPE 117

Query: 497 FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQIL 556
              S   L   D+  N L     T + E    L  ++  +N+    +P     L   ++L
Sbjct: 118 LPASLKHL---DVDNNQL-----TMLPELPALLEYINADNNQLT-MLPELPTSL---EVL 165

Query: 557 DLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQ 616
            +  N ++ + P+   +           L +++N       +E L +             
Sbjct: 166 SVRNNQLTFL-PELPESLE--------ALDVSTN------LLESLPAVPVRNH------- 203

Query: 617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDF 676
                +           N+++  IPE I+ L     + L  N L+ +I   + Q  +   
Sbjct: 204 ----HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 677 LDLSQNQF 684
               +  F
Sbjct: 259 YHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.9 bits (189), Expect = 8e-15
 Identities = 38/231 (16%), Positives = 76/231 (32%), Gaps = 40/231 (17%)

Query: 69  PSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKY 128
                +     L L+  + S   +P+ +    ++  L ++       +P    +L   +Y
Sbjct: 53  LKECLINQFSELQLNRLNLS--SLPDNLPP--QITVLEITQNALI-SLPELPASL---EY 104

Query: 129 LDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFEN 188
           LD     L+       + +   SL+ L++++  L  ++P          + L  +    N
Sbjct: 105 LDACDNRLS------TLPELPASLKHLDVDNNQLT-MLPELP-------ALLEYINADNN 150

Query: 189 SLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNR 248
            L+      L  + + L VL + +N L        +   SL  L +  N LE        
Sbjct: 151 QLTM-----LPELPTSLEVLSVRNNQLT----FLPELPESLEALDVSTNLLES------- 194

Query: 249 LNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
           L     +               N +T +        L     + L+DN  +
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRITHIPEN--ILSLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.4 bits (185), Expect = 3e-14
 Identities = 51/325 (15%), Positives = 104/325 (32%), Gaps = 60/325 (18%)

Query: 421 ISFLCSINGHKLEFLDLSNNILSG---RLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFL 477
           +S +  IN +     +   N +SG        W ++++ A+     N     + +    +
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC--LI 58

Query: 478 HSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537
           +    L L   +L   LP       Q+ ++++ +N L   +P         L  L    N
Sbjct: 59  NQFSELQLNRLNL-SSLPDNL--PPQITVLEITQNALI-SLPELPA----SLEYLDACDN 110

Query: 538 KFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQG 597
           +    +P     L   + LD+  N ++ ++P+               +   +N       
Sbjct: 111 RLS-TLPELPASL---KHLDVDNNQLT-MLPELPALLE--------YINADNNQ------ 151

Query: 598 IEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSR 657
           +  L                        +++L    N+L+  +PE       L AL++S 
Sbjct: 152 LTMLP------------------ELPTSLEVLSVRNNQLT-FLPEL---PESLEALDVST 189

Query: 658 NNLTGQITPKIDQLKSL----DFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP 713
           N L   +     +         F    +N+    IP ++  L     + L  N LS +I 
Sbjct: 190 NLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247

Query: 714 LGTQLQSFNASVYAGNPELCGLPLR 738
                Q+     +           +
Sbjct: 248 ESLSQQTAQPDYHGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.8 bits (173), Expect = 9e-13
 Identities = 71/480 (14%), Positives = 137/480 (28%), Gaps = 93/480 (19%)

Query: 231 TLYLGFNELEEL--FLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNL 288
           ++ L  N    L      N ++GT   + S   K +  +L G +    V+      ++  
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 289 KALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISD 348
             L L+  + +                           P  L    QI VL+I+   +  
Sbjct: 62  SELQLNRLNLS-------------------------SLPDNLPP--QITVLEITQNALI- 93

Query: 349 TVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNAS 408
           ++P+    L +     +  +N +                            +P LP++  
Sbjct: 94  SLPELPASLEY----LDACDNRLST--------------------------LPELPASLK 123

Query: 409 VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSG 468
            L++  N+ +             LE+++  NN L+  LP+       L VLS+ NN  + 
Sbjct: 124 HLDVDNNQLTMLPELPAL-----LEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLT- 173

Query: 469 KIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQL----ILMDLGKNGLSGEIPTWIGE 524
            +P+    L   + L +  N L   LP+            I     +N ++  IP  I  
Sbjct: 174 FLPELPESL---EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS 228

Query: 525 GLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSN 584
            L     + L+ N    +   +       Q           +     N        + + 
Sbjct: 229 -LDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

Query: 585 LAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEI 644
               +  +   Q     E        +          T+       F        +   +
Sbjct: 287 WFPENKQSDVSQIWHAFEHEEHANTFSAF--LDRLSDTVSARNTSGFREQ-----VAAWL 339

Query: 645 MDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFV-----GGIPSSLCQLSRLS 699
             L     L      +    T   +   +L + +L +   V     G   +    L  L 
Sbjct: 340 EKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.0 bits (190), Expect = 7e-15
 Identities = 76/461 (16%), Positives = 137/461 (29%), Gaps = 86/461 (18%)

Query: 63  LKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGN 122
           ++ T + S  +L  L  LD   +  +   +   I  L  L  L  +S      +   L  
Sbjct: 30  MQATDTISEEQLATLTSLDCHNSSITD--MTG-IEKLTGLTKLICTSNNITT-LD--LSQ 83

Query: 123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182
            + L YL      L         +  L  L  LN +   L  +  S           L  
Sbjct: 84  NTNLTYLACDSNKLTNL-----DVTPLTKLTYLNCDTNKLTKLDVSQN-------PLLTY 131

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEEL 242
           L    N+L+        ++S    + +LD +L +            L TL   FN++ EL
Sbjct: 132 LNCARNTLTE------IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185

Query: 243 FLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKF 302
            + +N+              L+ L+   N++T +      ++   L  L    N  T   
Sbjct: 186 DVSQNK-------------LLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLT--- 225

Query: 303 SHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIA 362
             D  P  QL         +         +  ++  L      +                
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLT-ELDVSTLS--KLTTLHCIQTDLL--------------- 267

Query: 363 DFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSE-SI 421
           + +L++N    +L             +D++ N          +   +L+      +E  +
Sbjct: 268 EIDLTHN---TQLIYFQAEGCRKIKELDVTHN----------TQLYLLDCQAAGITELDL 314

Query: 422 SFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQ 481
           S        KL +L L+N  L+  L        +L  LS  N         S+G + ++ 
Sbjct: 315 SQN-----PKLVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAHIQ-DFS-SVGKIPALN 364

Query: 482 TLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWI 522
                    I        + S  I +        G      
Sbjct: 365 NNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 75/534 (14%), Positives = 148/534 (27%), Gaps = 121/534 (22%)

Query: 102 LRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCH 161
                 ++ E +         L+ L  LD    ++      +  I+KL  L  L     +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD----MTGIEKLTGLTKLICTSNN 75

Query: 162 LPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLE 221
           +  +  S   +L +       L    N L++          +KL  L+ D+N L      
Sbjct: 76  ITTLDLSQNTNLTY-------LACDSNKLTNLD----VTPLTKLTYLNCDTNKLTKL--- 121

Query: 222 PFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESV 281
              +   L  L    N L E+ +  N              +L  L    N      T+  
Sbjct: 122 DVSQNPLLTYLNCARNTLTEIDVSHNT-------------QLTELDCHLNKKI---TKLD 165

Query: 282 FSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDI 341
            +  + L  L    N              ++  + +   +              +  L+ 
Sbjct: 166 VTPQTQLTTLDCSFN--------------KITELDVSQNK-------------LLNRLNC 198

Query: 342 SDAGISDTVPDWFWDLSHTIA--DFNLSNNHIK----GKLPNLSLRFDPFSSSIDISSNY 395
               I+        DL+  I     + S+N +       L  L        +  D S N 
Sbjct: 199 DTNNITK------LDLNQNIQLTFLDCSSNKLTEIDVTPLTQL--------TYFDCSVNP 244

Query: 396 FEGLIPPLPSNASVLNLSRNKFSE-------SISFLCSINGHKLEFLDLSNNILSGRLPD 448
              L     S  + L+  +    E        + +  +    K++ LD+++N        
Sbjct: 245 LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT------- 297

Query: 449 CWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMD 508
                 +L +L       + ++   +     +  L L N  L  EL       ++L  + 
Sbjct: 298 ------QLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLS 345

Query: 509 LGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIP 568
                +  +  +     +P L                   Q   +    L+ N+++  + 
Sbjct: 346 CVNAHIQ-DFSSV--GKIPALNNNFEAEG-----------QTITMPKETLTNNSLTIAVS 391

Query: 569 KCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRST 622
             L +  G             +        E L +    V  T+         T
Sbjct: 392 PDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGT 445

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 59/429 (13%), Positives = 126/429 (29%), Gaps = 74/429 (17%)

Query: 305 DWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADF 364
           DW P       +  + +M        +    +  LD  ++ I+D        L+  +   
Sbjct: 13  DWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTG-LTKL 69

Query: 365 NLSNNHIK----GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSES 420
             ++N+I      +  NL+         +   SN    L     +  + LN   NK ++ 
Sbjct: 70  ICTSNNITTLDLSQNTNLT--------YLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL 121

Query: 421 ISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSI 480
                      L +L+ + N L+  +        +L  L    N    K+   +     +
Sbjct: 122 DVSQNP----LLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKITKLD--VTPQTQL 172

Query: 481 QTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH 540
            TL    N +  EL         L  ++   N ++ ++         +L  L   SNK  
Sbjct: 173 TTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLDL---NQNIQLTFLDCSSNKLT 225

Query: 541 GNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEF 600
             I      L+ +   D S+N ++ +    L+  T         L               
Sbjct: 226 -EIDVT--PLTQLTYFDCSVNPLTELDVSTLSKLT--------TLHCIQT---------- 264

Query: 601 LESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNL 660
                                     +++ F           ++     L  L+     +
Sbjct: 265 ---------------DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309

Query: 661 TGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQS 720
           T      + Q   L +L L+  +    +   +   ++L  ++    ++        ++ +
Sbjct: 310 T---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIPA 362

Query: 721 FNASVYAGN 729
            N +  A  
Sbjct: 363 LNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 73/517 (14%), Positives = 137/517 (26%), Gaps = 120/517 (23%)

Query: 239 LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSF 298
                     +  T      ++  L +L    +S+T +   +   +L+ L  L    N+ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNI 76

Query: 299 T-LKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDL 357
           T L  S        L  +   S              N++  LD++               
Sbjct: 77  TTLDLSQ----NTNLTYLACDS--------------NKLTNLDVT--------------- 103

Query: 358 SHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKF 417
                            L  L        + ++  +N    L        + LN +RN  
Sbjct: 104 ----------------PLTKL--------TYLNCDTNKLTKLDVSQNPLLTYLNCARNTL 139

Query: 418 SE-SISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGF 476
           +E  +S        +L  LD   N    +L        +L  L  + N  + ++  S   
Sbjct: 140 TEIDVSHN-----TQLTELDCHLNKKITKLDVTPQT--QLTTLDCSFNKIT-ELDVS--Q 189

Query: 477 LHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS 536
              +  L+   N++  +L        QL  +D   N L+ EI       L +L       
Sbjct: 190 NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EIDV---TPLTQLTYFDCSV 242

Query: 537 NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQ 596
           N     +      LS +  L     ++  I    L + T +    +              
Sbjct: 243 NPLT-ELDV--STLSKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRKIKELDV--- 293

Query: 597 GIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLS 656
                                   +    + +LD     ++  +   +     LV L L+
Sbjct: 294 ------------------------THNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLN 326

Query: 657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT 716
              LT      +     L  L            SS+ ++  L+    +            
Sbjct: 327 NTELT---ELDVSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPKETL 381

Query: 717 QLQSFNASVYAGNPELCGLPLRNKCPDEDSAASPERD 753
              S   +V     +  G P+  +  D          
Sbjct: 382 TNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNT 418

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 55/234 (23%), Positives = 83/234 (35%), Gaps = 50/234 (21%)

Query: 90  SRIPEFIGSL----NKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRI 145
             +P    +L    N LR+L                +   L+ LDLS   +    D    
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLG----------SYSFFSFPELQVLDLSRCEIQTIED--GA 71

Query: 146 IDKLPSLRTLNLEH---CHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNIS 202
              L  L TL L       L     S L       SSL  L   E +L+S +  +     
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGL-------SSLQKLVAVETNLAS-LENFPIGHL 123

Query: 203 SKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELE------------------EL 242
             L  L++  NL+Q S   P  F  + +L  L L  N+++                   L
Sbjct: 124 KTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 243 FLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
            L  N +N  I     +  +L  L+L  N L   V + +F  L++L+ + L  N
Sbjct: 183 DLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFN--- 237
           L L  N L   +  + F    +L VLDL    +Q   +E   +  +  L TL L  N   
Sbjct: 33  LDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQ 89

Query: 238 -----------ELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELS 286
                       L++L   +  L    N  +  +  L  L+++ N +        FS L+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 287 NLKALHLDDNSFT 299
           NL+ L L  N   
Sbjct: 150 NLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 8/167 (4%)

Query: 73  KLYHLRHLDLSENDFSGSRIPEFI-GSLNKLRYLSLSSAEFEGPIPSQL-GNLSRLKYLD 130
            L HL  L L+ N      +       L+ L+ L          + +   G+L  LK L+
Sbjct: 74  SLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELN 130

Query: 131 LSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSL 190
           +++ NL +S         L +L  L+L    +  I  +DL  L+       +L L  N +
Sbjct: 131 VAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 191 SSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN 237
            + I P  F    +L  L LD+N L+      FDR+ SL+ ++L  N
Sbjct: 190 -NFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 55/288 (19%), Positives = 86/288 (29%), Gaps = 80/288 (27%)

Query: 400 IPP-LPSNASVLNLSRNKFS--ESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRL 456
           IP  LP +   L+LS N      S SF    +  +L+ LDLS   +              
Sbjct: 22  IPDNLPFSTKNLDLSFNPLRHLGSYSFF---SFPELQVLDLSRCEIQ------------- 65

Query: 457 AVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSG 516
              ++ +  +          L  + TL L  N +       F   S L  +   +  L+ 
Sbjct: 66  ---TIEDGAYQS--------LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA- 113

Query: 517 EIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVC-QLSYIQILDLSLNNISGIIPKCLNNFT 575
            +  +    L  L  L++  N        +    L+ ++ LDLS N I  I    L    
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 576 GMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNK 635
                                             +                  LD S+N 
Sbjct: 174 Q---------------------------------MPLLNLS------------LDLSLNP 188

Query: 636 LSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQN 682
           ++  I       + L  L L  N L   +   I D+L SL  + L  N
Sbjct: 189 MN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 627 KILDFSMNKLSGTIPEEIMD-LVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQ- 683
           K LD S N L   +          L  L+LSR  +   I       L  L  L L+ N  
Sbjct: 31  KNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 684 --FVGGIPSSLCQLSRLSVMNLSYNNLS 709
                G  S L  L +L        NL+
Sbjct: 89  QSLALGAFSGLSSLQKL---VAVETNLA 113

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 44/248 (17%), Positives = 85/248 (34%), Gaps = 42/248 (16%)

Query: 67  ISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRL 126
           I P    L +   +   +++ +          L+ +  LS             +  L+ L
Sbjct: 12  IFP-DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNL 65

Query: 127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLF 186
             L+L    +      L  +  L  +  L L    L  +     L       S+  L L 
Sbjct: 66  IGLELKDNQITD----LAPLKNLTKITELELSGNPLKNVSAIAGL------QSIKTLDLT 115

Query: 187 ENSLSSSIYPWLFNIS--SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE------ 238
              ++      +  ++  S L VL LD N +  + + P   + +L+ L +G  +      
Sbjct: 116 STQITD-----VTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP 168

Query: 239 ------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALH 292
                 L  L    N+++      L+ +  L  + L  N ++ V   S  +  SNL  + 
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV---SPLANTSNLFIVT 223

Query: 293 LDDNSFTL 300
           L + + T 
Sbjct: 224 LTNQTITN 231

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 56/358 (15%), Positives = 116/358 (32%), Gaps = 77/358 (21%)

Query: 120 LGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSS 179
              L+    +     N+            L  + TL+     +     + +  + +  + 
Sbjct: 15  DPALANAIKIAAGKSNVTD----TVTQADLDGITTLSAFGTGV-----TTIEGVQYLNN- 64

Query: 180 LGALYLFENSLSSSIYPWLFNIS--SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN 237
           L  L L +N ++      L  +   +K+  L+L  N L    +     + S++TL L   
Sbjct: 65  LIGLELKDNQITD-----LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTST 117

Query: 238 ELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNS 297
           ++ ++              L+ +  L  L L  N +T +   S  + L+NL+ L + +  
Sbjct: 118 QITDV------------TPLAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQ 162

Query: 298 FTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDL 357
            +       + P                    L   +++  L   D  ISD  P     L
Sbjct: 163 VSD------LTP--------------------LANLSKLTTLKADDNKISDISP--LASL 194

Query: 358 SHTIADFNLSNNHIK-----GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNL 412
            + + + +L NN I          NL          + +++           +N  V N+
Sbjct: 195 PN-LIEVHLKNNQISDVSPLANTSNLF--------IVTLTNQTITNQPVFYNNNLVVPNV 245

Query: 413 SRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKI 470
            +      I+     +       +L+ N+ S      +  F++          FSG +
Sbjct: 246 VKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSY-TFNQSVTFKNTTVPFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 43/250 (17%), Positives = 85/250 (34%), Gaps = 44/250 (17%)

Query: 477 LHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS 536
           L +   ++   +++             +  +     G++  I     + L  L+ L LK 
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELKD 72

Query: 537 NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQ 596
           N+     P +   L+ I  L+LS N +  +    +     +       L +TS       
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPLKNVSA--IAGLQSI-----KTLDLTSTQI---T 120

Query: 597 GIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLS 656
            +  L                     L  +++L   +N+++   P  +  L  L  L++ 
Sbjct: 121 DVTPLAG-------------------LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG 159

Query: 657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG- 715
              ++  +TP +  L  L  L    N+      S L  L  L  ++L  N +S   PL  
Sbjct: 160 NAQVS-DLTP-LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSPLAN 215

Query: 716 -TQLQSFNAS 724
            + L     +
Sbjct: 216 TSNLFIVTLT 225

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 47/256 (18%), Positives = 91/256 (35%), Gaps = 44/256 (17%)

Query: 459 LSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEI 518
           ++   +  +  + ++   L  I TLS +    +  +    +  + LI ++L  N ++   
Sbjct: 24  IAAGKSNVTDTVTQAD--LDGITTLSAFGT-GVTTI-EGVQYLNNLIGLELKDNQITDLA 79

Query: 519 PTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMA 578
           P    + L K+  L L  N            L  I+ LDL+   I+ + P  L   + + 
Sbjct: 80  PL---KNLTKITELELSGNPLKNVSAIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQ 132

Query: 579 QKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSG 638
                   IT+        I  L                   + L  ++ L     ++S 
Sbjct: 133 VLYLDLNQITN--------ISPL-------------------AGLTNLQYLSIGNAQVSD 165

Query: 639 TIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRL 698
             P  + +L  L  L    N ++  I+P +  L +L  + L  NQ      S L   S L
Sbjct: 166 LTP--LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISD--VSPLANTSNL 219

Query: 699 SVMNLSYNNLSGKIPL 714
            ++ L+   ++ +   
Sbjct: 220 FIVTLTNQTITNQPVF 235

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 23/206 (11%)

Query: 524 EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS 583
             L   + ++   +     +      L  I  L      ++ I    +     +      
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71

Query: 584 NLAITSNYTFERQGIEFLESYVDNVVLTWKG---SQHEYRSTLGLVKILDFSMNKLSGTI 640
           +  IT         +  L++      L   G         + L  +K LD +  +++   
Sbjct: 72  DNQITD--------LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 641 PEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSV 700
           P  +  L  L  L L  N +T  I+P +  L +L +L +   Q      + L  LS+L+ 
Sbjct: 124 P--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTT 177

Query: 701 MNLSYNNLSGKIPLG--TQLQSFNAS 724
           +    N +S   PL     L   +  
Sbjct: 178 LKADDNKISDISPLASLPNLIEVHLK 203

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 410 LNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGK 469
           L+      + +I  +  +N   L  L+L +N ++  L        ++  L L+ N    K
Sbjct: 46  LSAFGTGVT-TIEGVQYLN--NLIGLELKDNQIT-DLAPL-KNLTKITELELSGNPL--K 98

Query: 470 IPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKL 529
              ++  L SI+TL L +  +     +     S L ++ L  N ++   P     GL  L
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISPL---AGLTNL 153

Query: 530 VVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIP 568
             LS+ + +     P     LS +  L    N IS I P
Sbjct: 154 QYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKISDISP 190

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 3e-13
 Identities = 54/284 (19%), Positives = 97/284 (34%), Gaps = 43/284 (15%)

Query: 69  PSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSS---AEFEGPIPSQLGNLSR 125
            +  +L  +  +  + +D     + + I  L  +  L L+     + +      L NL  
Sbjct: 37  VTQNELNSIDQIIANNSDI--KSV-QGIQYLPNVTKLFLNGNKLTDIKP-----LTNLKN 88

Query: 126 LKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYL 185
           L +L L     NK +D L  +  L  L++L+LEH  +     SD+  L      L +LYL
Sbjct: 89  LGWLFLDE---NKIKD-LSSLKDLKKLKSLSLEHNGI-----SDINGLVHLP-QLESLYL 138

Query: 186 FENSLSSSIYPWLFNIS--SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE----- 238
             N ++      +  +S  +KL  L L+ N +  S + P   +  L+ LYL  N      
Sbjct: 139 GNNKITD-----ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISDLR 191

Query: 239 -------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKAL 291
                  L+ L L             S +   + +  +  SL      S   +       
Sbjct: 192 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251

Query: 292 -HLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQN 334
            HL + +  + F                     P    +  + +
Sbjct: 252 WHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYD 295

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.5 bits (146), Expect = 1e-09
 Identities = 56/271 (20%), Positives = 97/271 (35%), Gaps = 35/271 (12%)

Query: 335 QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK-----GKLPNLSLRFDPFSSSI 389
           +    ++    ++D V     +L+  I     +N+ IK       LPN++         +
Sbjct: 22  ETIKDNLKKKSVTDAVT--QNELNS-IDQIIANNSDIKSVQGIQYLPNVT--------KL 70

Query: 390 DISSNYFEGLIPPLPS--NASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLP 447
            ++ N     I PL +  N   L L  NK    +S L  +   KL+ L L +N +S  + 
Sbjct: 71  FLNGNKLTD-IKPLTNLKNLGWLFLDENKIK-DLSSLKDLK--KLKSLSLEHNGIS-DIN 125

Query: 448 DCWMQFDRLAVLSLANNFFSGKIPK--SMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLI 505
                  +L  L L NN    KI     +  L  + TLSL +N  I ++       ++L 
Sbjct: 126 GLV-HLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQ-ISDI-VPLAGLTKLQ 178

Query: 506 LMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISG 565
            + L KN +S ++      GL  L VL L S +           L     +  +  ++  
Sbjct: 179 NLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

Query: 566 IIPKCLNNFTGMAQKSSSNLAITSNYTFERQ 596
                 +               T+  +F   
Sbjct: 236 PEIISDDGDYEKPNVKWHLPEFTNEVSFIFY 266

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 7e-09
 Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 41/226 (18%)

Query: 484 SLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNI 543
           ++  ++ I ++     + ++ I  +L K  ++  +       L  +  +   ++    ++
Sbjct: 4   TITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIK-SV 58

Query: 544 PFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLES 603
              +  L  +  L L+ N ++ I P  L N   +         I          +  L+ 
Sbjct: 59  QG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--------LSSLKD 107

Query: 604 YVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ 663
                              L  +K L    N +S  I   ++ L  L +L L  N +T  
Sbjct: 108 -------------------LKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-D 145

Query: 664 ITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709
           IT  + +L  LD L L  NQ +  I   L  L++L  + LS N++S
Sbjct: 146 ITV-LSRLTKLDTLSLEDNQ-ISDI-VPLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 7e-09
 Identities = 47/283 (16%), Positives = 98/283 (34%), Gaps = 65/283 (22%)

Query: 203 SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE------------LEELFLGKNRLN 250
           + +  +  +++ +    ++    + ++  L+L  N+            L  LFL +N++ 
Sbjct: 43  NSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK 100

Query: 251 GTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPF 310
              +  L  + KL +LSL  N ++ +   +    L  L++L+L +N  T       I   
Sbjct: 101 DLSS--LKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITD------ITV- 148

Query: 311 QLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSH--TIADFNLSN 368
                              L    +++ L + D  ISD VP     L+    + +  LS 
Sbjct: 149 -------------------LSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSK 184

Query: 369 NHIK-----GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISF 423
           NHI        L NL          +++ S           SN  V N  +N     ++ 
Sbjct: 185 NHISDLRALAGLKNL--------DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

Query: 424 LCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFF 466
               +    E  ++  ++        ++ +  + +      F 
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 279

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 36/203 (17%), Positives = 77/203 (37%), Gaps = 39/203 (19%)

Query: 524 EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS 583
           +   + +  +LK       +     +L+ I  +  + ++I  +  + +     + +   +
Sbjct: 18  DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLN 73

Query: 584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEE 643
              +T         I+ L +                   L  +  L    NK+   +   
Sbjct: 74  GNKLTD--------IKPLTN-------------------LKNLGWLFLDENKIK-DL-SS 104

Query: 644 IMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNL 703
           + DL  L +L+L  N ++  I   +  L  L+ L L  N+      + L +L++L  ++L
Sbjct: 105 LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSL 160

Query: 704 SYNNLSGKIPLG--TQLQSFNAS 724
             N +S  +PL   T+LQ+   S
Sbjct: 161 EDNQISDIVPLAGLTKLQNLYLS 183

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.9 bits (134), Expect = 4e-08
 Identities = 44/275 (16%), Positives = 89/275 (32%), Gaps = 61/275 (22%)

Query: 239 LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSF 298
           + E       +            +    +L   S+T  VT    +EL+++  +  +++  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDI 55

Query: 299 TLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLS 358
                   +   Q             + P        +  L ++   ++D  P    +L 
Sbjct: 56  K------SVQGIQ-------------YLPN-------VTKLFLNGNKLTDIKP--LTNLK 87

Query: 359 HTIADFNLSNNHIK-----GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLP--SNASVLN 411
           + +    L  N IK       L  L         S+ +  N     I  L        L 
Sbjct: 88  N-LGWLFLDENKIKDLSSLKDLKKL--------KSLSLEHNGIS-DINGLVHLPQLESLY 137

Query: 412 LSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIP 471
           L  NK +  I+ L  +   KL+ L L +N +S  +        +L  L L+ N     I 
Sbjct: 138 LGNNKIT-DITVLSRLT--KLDTLSLEDNQIS-DIVPL-AGLTKLQNLYLSKN----HIS 188

Query: 472 --KSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQL 504
             +++  L ++  L L++   + +  +   +    
Sbjct: 189 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 16/149 (10%)

Query: 66  TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSR 125
            +S  L  L  L+ L L  N  S   I   +  L +L  L L + +        L  L++
Sbjct: 101 DLSS-LKDLKKLKSLSLEHNGIS--DI-NGLVHLPQLESLYLGNNKITDITV--LSRLTK 154

Query: 126 LKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYL 185
           L  L L    ++     +  +  L  L+ L L   H+  +    L  L     +L  L L
Sbjct: 155 LDTLSLEDNQISD----IVPLAGLTKLQNLYLSKNHISDL--RALAGLK----NLDVLEL 204

Query: 186 FENSLSSSIYPWLFNISSKLVVLDLDSNL 214
           F     +       N+     V + D +L
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 4e-07
 Identities = 47/302 (15%), Positives = 84/302 (27%), Gaps = 72/302 (23%)

Query: 220 LEPFDRMVSLRTLYLGFNE------------LEELFLGKNRLNGTINQWLSRMYKLDALS 267
           + P D         L                ++++    + +       +  +  +  L 
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 71

Query: 268 LSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFP 327
           L+GN LT +      + L NL  L LD+N          +                    
Sbjct: 72  LNGNKLTDI---KPLTNLKNLGWLFLDENKIKD------LSS------------------ 104

Query: 328 KWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK-----GKLPNLSLRF 382
             L+   +++ L +   GISD        L   +    L NN I       +L  L    
Sbjct: 105 --LKDLKKLKSLSLEHNGISDING--LVHLPQ-LESLYLGNNKITDITVLSRLTKL---- 155

Query: 383 DPFSSSIDISSNYFEGLIPPLPSNAS--VLNLSRNKFSESISFLCSINGHKLEFLDLSNN 440
                ++ +  N     I PL        L LS+N  S  +  L  +    L+ L+L + 
Sbjct: 156 ----DTLSLEDNQISD-IVPLAGLTKLQNLYLSKNHIS-DLRALAGLK--NLDVLELFSQ 207

Query: 441 ILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKS 500
               +  +          +   +         S               ++   LP F   
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS-------DDGDYEKPNVKWHLPEFTNE 260

Query: 501 CS 502
            S
Sbjct: 261 VS 262

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 51/176 (28%), Positives = 66/176 (37%), Gaps = 25/176 (14%)

Query: 126 LKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYL 185
              L LS   L         +     L  LNL+   L  +     L        LG L L
Sbjct: 33  TTILHLSENLLYTFSL--ATLMPYTRLTQLNLDRAELTKLQVDGTL------PVLGTLDL 84

Query: 186 FENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELF 243
             N L S   P L      L VLD+  N L    L       +  L+ LYL  NEL+ L 
Sbjct: 85  SHNQLQS--LPLLGQTLPALTVLDVSFNRLTS--LPLGALRGLGELQELYLKGNELKTLP 140

Query: 244 LGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
            G           L+   KL+ LSL+ N+LT  +   + + L NL  L L +NS  
Sbjct: 141 PGL----------LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 53/197 (26%), Positives = 70/197 (35%), Gaps = 26/197 (13%)

Query: 102 LRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCH 161
              L LS         + L   +RL  L+L    L K    L++   LP L TL+L H  
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPVLGTLDLSHNQ 88

Query: 162 LPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLE 221
           L   +P     L     +L  L +  N L+S +         +L  L L  N L+   L 
Sbjct: 89  LQ-SLPLLGQTL----PALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT--LP 140

Query: 222 P--FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTE 279
           P        L  L L  N L EL  G           L+ +  LD L L  NSL   + +
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGL----------LNGLENLDTLLLQENSLYT-IPK 189

Query: 280 SVFSELSNLKALHLDDN 296
             F     L    L  N
Sbjct: 190 GFFG-SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 15/187 (8%)

Query: 53  DLQVLVHSEPLKGTISPSLL-KLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAE 111
           D  +L  SE L  T S + L     L  L+L   + +  ++    G+L  L  L LS  +
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVD-GTLPVLGTLDLSHNQ 88

Query: 112 FEGPIPSQLGNLSRLKYLDLSYINLNK-SRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDL 170
            +  +P     L  L  LD+S+  L          +  L  L+ L L+   L   +P  L
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNEL-KTLPPGL 143

Query: 171 LHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLR 230
           L     T  L  L L  N+L + +   L N    L  L L  N L       F     L 
Sbjct: 144 LT---PTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLP 198

Query: 231 TLYLGFN 237
             +L  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 14/112 (12%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN------------ELEELFLGKN 247
           ++     +L L  NLL    L        L  L L                L  L L  N
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87

Query: 248 RLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
           +L  ++      +  L  L +S N LT  +       L  L+ L+L  N   
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 58/230 (25%)

Query: 479 SIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNK 538
               L L  N L     +     ++L  ++L +  L+ ++       LP L  L L  N+
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQ 88

Query: 539 FHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGI 598
              ++P     L  + +LD+S N ++ +         G+ +                   
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSLPL---GALRGLGE------------------- 125

Query: 599 EFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMD-LVGLVALNLSR 657
                      L                  L    N+L  T+P  ++     L  L+L+ 
Sbjct: 126 -----------LQE----------------LYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157

Query: 658 NNLTGQITPKI-DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN 706
           NNLT ++   + + L++LD L L +N     IP        L    L  N
Sbjct: 158 NNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 432 LEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLI 491
              L LS N+L        M + RL  L+L     + K+      L  + TL L +N L 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQL- 89

Query: 492 GELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQ-L 550
             LP   ++   L ++D+  N L+  +P     GL +L  L LK N+    +P  +    
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147

Query: 551 SYIQILDLSLNNISGI 566
             ++ L L+ NN++ +
Sbjct: 148 PKLEKLSLANNNLTEL 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 19/128 (14%)

Query: 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVG 686
            IL  S N L       +M    L  LNL R  LT         L  L  LDLS NQ   
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ- 90

Query: 687 GIPSSLCQLSRLSVMNLSYNNLSGKIPLGT---------------QLQSFNASVYAGNPE 731
            +P     L  L+V+++S+N L+  +PLG                +L++    +    P+
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 732 LCGLPLRN 739
           L  L L N
Sbjct: 150 LEKLSLAN 157

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 38/173 (21%)

Query: 554 QILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWK 613
            IL LS N +       L  +T + Q +     +T                         
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT------------------ 75

Query: 614 GSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLK 672
                    L ++  LD S N+L  ++P     L  L  L++S N LT  +       L 
Sbjct: 76  ---------LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG 124

Query: 673 SLDFLDLSQNQFVGGIPSSLCQ-LSRLSVMNLSYNNLSGKIPLG-----TQLQ 719
            L  L L  N+    +P  L     +L  ++L+ NNL+ ++P G       L 
Sbjct: 125 ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 43/237 (18%), Positives = 82/237 (34%), Gaps = 40/237 (16%)

Query: 67  ISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRL 126
           I             +L +   +          LN +  +  ++++ +      +  L  +
Sbjct: 17  IFS-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIK--SVQGIQYLPNV 70

Query: 127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLF 186
             L L+   L      ++ +  L +L  L L+   +  +  S L  L      L +L L 
Sbjct: 71  TKLFLNGNKLTD----IKPLANLKNLGWLFLDENKVKDL--SSLKDL----KKLKSLSLE 120

Query: 187 ENSLSSSIYPWLFNIS--SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFL 244
            N +S      +  +    +L  L L +N +    +    R+  L TL L  N++ ++  
Sbjct: 121 HNGISD-----INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-- 171

Query: 245 GKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLK 301
                       L+ + KL  L LS N ++ +      + L NL  L L       K
Sbjct: 172 ----------VPLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLNK 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 51/287 (17%), Positives = 101/287 (35%), Gaps = 66/287 (22%)

Query: 203 SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE------------LEELFLGKNRLN 250
           + +  +  +++ +    ++    + ++  L+L  N+            L  LFL +N++ 
Sbjct: 46  NSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103

Query: 251 GTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPF 310
              +  L  + KL +LSL  N ++ +   +    L  L++L+L +N  T       I   
Sbjct: 104 DLSS--LKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITD------ITV- 151

Query: 311 QLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSH--TIADFNLSN 368
                              L    +++ L + D  ISD VP     L+    + +  LS 
Sbjct: 152 -------------------LSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSK 187

Query: 369 NHIK-----GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISF 423
           NHI        L NL          +++ S           SN  V N  +N     ++ 
Sbjct: 188 NHISDLRALAGLKNL--------DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

Query: 424 LCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKI 470
               +    E  ++  + L     +    F +   +  A   F G++
Sbjct: 240 EIISDDGDYEKPNVKWH-LPEFTNEVSFIFYQPVTIGKAKARFHGRV 285

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 36/203 (17%), Positives = 76/203 (37%), Gaps = 39/203 (19%)

Query: 524 EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS 583
           +   + +  +LK       +     +L+ I  +  + ++I  +  + +     + +   +
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLN 76

Query: 584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEE 643
              +T         I+ L                   + L  +  L    NK+       
Sbjct: 77  GNKLTD--------IKPL-------------------ANLKNLGWLFLDENKVKDL--SS 107

Query: 644 IMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNL 703
           + DL  L +L+L  N ++  I   +  L  L+ L L  N+      + L +L++L  ++L
Sbjct: 108 LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSL 163

Query: 704 SYNNLSGKIPLG--TQLQSFNAS 724
             N +S  +PL   T+LQ+   S
Sbjct: 164 EDNQISDIVPLAGLTKLQNLYLS 186

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 42/214 (19%), Positives = 74/214 (34%), Gaps = 40/214 (18%)

Query: 496 SFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQI 555
               + ++ I  +L K  ++  +       L  +  +   ++        Q   L  +  
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQ--YLPNVTK 72

Query: 556 LDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGS 615
           L L+ N ++ I P  L N   +         +          +  L+             
Sbjct: 73  LFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--------LSSLKD------------ 110

Query: 616 QHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLD 675
                  L  +K L    N +S  I   ++ L  L +L L  N +T  IT  + +L  LD
Sbjct: 111 -------LKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLD 159

Query: 676 FLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709
            L L  NQ        L  L++L  + LS N++S
Sbjct: 160 TLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 56/269 (20%), Positives = 98/269 (36%), Gaps = 35/269 (13%)

Query: 335 QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK-----GKLPNLSLRFDPFSSSI 389
           +    ++    ++D V     +L+  I     +N+ IK       LPN++         +
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNS-IDQIIANNSDIKSVQGIQYLPNVT--------KL 73

Query: 390 DISSNYFEGLIPPLPS--NASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLP 447
            ++ N     I PL +  N   L L  NK    +S L  +   KL+ L L +N +S  + 
Sbjct: 74  FLNGNKLTD-IKPLANLKNLGWLFLDENKVK-DLSSLKDLK--KLKSLSLEHNGIS-DIN 128

Query: 448 DCWMQFDRLAVLSLANNFFSGKIPK--SMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLI 505
              +   +L  L L NN    KI     +  L  + TLSL +N  I ++       ++L 
Sbjct: 129 GL-VHLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQ-ISDI-VPLAGLTKLQ 181

Query: 506 LMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISG 565
            + L KN +S ++      GL  L VL L S +           L     +  +  ++  
Sbjct: 182 NLYLSKNHIS-DLRAL--AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

Query: 566 IIPKCLNNFTGMAQKSSSNLAITSNYTFE 594
                 +               T+  +F 
Sbjct: 239 PEIISDDGDYEKPNVKWHLPEFTNEVSFI 267

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 33/146 (22%), Positives = 53/146 (36%), Gaps = 15/146 (10%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYL 129
           SL  L  L+ L L  N  S   I   +  L +L  L L + +        L  L++L  L
Sbjct: 107 SLKDLKKLKSLSLEHNGIS--DI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTL 161

Query: 130 DLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENS 189
            L    ++     +  +  L  L+ L L   H+  +    L  L     +L  L LF   
Sbjct: 162 SLEDNQISD----IVPLAGLTKLQNLYLSKNHISDL--RALAGL----KNLDVLELFSQE 211

Query: 190 LSSSIYPWLFNISSKLVVLDLDSNLL 215
             +       N+     V + D +L+
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 39/246 (15%)

Query: 257 LSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQ----L 312
                +    +L   S+T  VT    +EL+++  +  +++          +   Q    +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKS------VQGIQYLPNV 70

Query: 313 IIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK 372
             + L   ++    P  L     +  L + +  + D       DL   +   +L +N I 
Sbjct: 71  TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKK-LKSLSLEHNGIS 125

Query: 373 -----GKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNAS--VLNLSRNKFSESISFLC 425
                  LP L         S+ + +N     I  L        L+L  N+ S  I  L 
Sbjct: 126 DINGLVHLPQL--------ESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQIS-DIVPLA 175

Query: 426 SINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSL 485
            +   KL+ L LS N +S       ++   L VL L +     K       L    T+  
Sbjct: 176 GLT--KLQNLYLSKNHISDLRALAGLK--NLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 486 YNNSLI 491
            + SL+
Sbjct: 232 TDGSLV 237

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.3 bits (165), Expect = 7e-12
 Identities = 89/420 (21%), Positives = 135/420 (32%), Gaps = 70/420 (16%)

Query: 67  ISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSL----NKLRYLSLSSAEF--EG--PIPS 118
           IS +L     L  L+L  N+     +   +  L     K++ LSL +      G   + S
Sbjct: 48  ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107

Query: 119 QLGNLSRLKYLDLSYINLNKSRDWLRIIDKL----PSLRTLNLEHCHLPPIIPSDLLHLN 174
            L  L  L+ L LS   L  +     + + L      L  L LE+C L       L  + 
Sbjct: 108 TLRTLPTLQELHLSDNLLGDA-GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166

Query: 175 FSTSSLGALYLFENSLSSS----IYPWLFNISSKLVVLDLDSNLLQ----GSLLEPFDRM 226
            +      L +  N ++ +    +   L +   +L  L L+S  +       L       
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226

Query: 227 VSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSEL- 285
            SLR L LG N+     LG   +       L    +L  L +    +T      +   L 
Sbjct: 227 ASLRELALGSNK-----LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 286 --SNLKALHLDDNSFT----------LKFSHDWIPPFQLIIILLGSCQMGP----HFPKW 329
              +LK L L  N             L          QL  + + SC        HF   
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPG-----CQLESLWVKSCSFTAACCSHFSSV 336

Query: 330 LQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSI 389
           L     +  L IS+  + D            +             L  L L      +  
Sbjct: 337 LAQNRFLLELQISNNRLEDAG-------VRELCQGLGQPGS---VLRVLWL------ADC 380

Query: 390 DISSNYFEGLIPPLPSNAS--VLNLSRNKFSES-ISFLC---SINGHKLEFLDLSNNILS 443
           D+S +    L   L +N S   L+LS N   ++ I  L       G  LE L L +   S
Sbjct: 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 79/416 (18%), Positives = 149/416 (35%), Gaps = 58/416 (13%)

Query: 77  LRHLDLSENDFSGSRIPEFIGSLNKLRYLSLS----SAEFEGPIPSQLGNLSRLKYLDLS 132
           ++ LD+   + S +R  E +  L + + + L     +      I S L     L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 133 YINLNKSRDWLRIIDKL----PSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFEN 188
              L        ++  L      ++ L+L++C L       L     +  +L  L+L +N
Sbjct: 65  SNELG-DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 189 SLSSS----IYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE-LEELF 243
            L  +    +   L +   +L  L L+   L  +  EP   +       L      +EL 
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-------LRAKPDFKELT 176

Query: 244 LGKNRLNGTINQWLSRM-----YKLDALSLSGNSLTGVVTESVFSELS---NLKALHLDD 295
           +  N +N    + L +       +L+AL L    +T      +   ++   +L+ L L  
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 296 NSFT----LKFSHDWIPP-FQLIIILLGSCQMGP----HFPKWLQTQNQIEVLDISDAGI 346
           N        +     + P  +L  + +  C +         + L+ +  ++ L ++   +
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

Query: 347 SDT----VPDWFWDLSHTIADFNLSNNHIKGK-LPNLS--LRFDPFSSSIDISSNYF--- 396
            D     + +   +    +    + +         + S  L  + F   + IS+N     
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

Query: 397 ------EGLIPPLPSNASVLNLSRNKFS-ESISFLCS--INGHKLEFLDLSNNILS 443
                 +GL  P  S   VL L+    S  S S L +  +  H L  LDLSNN L 
Sbjct: 357 GVRELCQGLGQPG-SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 73/510 (14%), Positives = 145/510 (28%), Gaps = 140/510 (27%)

Query: 238 ELEELFLGKNRLNGT-INQWLSRMYKLDALSLSGNSLTGVVTE---SVFSELSNLKALHL 293
           +++ L +    L+     + L  + +   + L    LT    +   S       L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 294 DDNSFT----------LKFSHDWIPPFQLIIILLGSCQMGP----HFPKWLQTQNQIEVL 339
             N             L+         ++  + L +C +           L+T   ++ L
Sbjct: 64  RSNELGDVGVHCVLQGLQTPS-----CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 340 DISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGL 399
            +SD  + D            + +  L       +L  L L          +S+   E L
Sbjct: 119 HLSDNLLGDAG-------LQLLCEGLLDPQC---RLEKLQL------EYCSLSAASCEPL 162

Query: 400 IPPLPSNAS--VLNLSRNKFSES-ISFLCSI---NGHKLEFLDLSNNILSGRLPDCWMQF 453
              L +      L +S N  +E+ +  LC     +  +LE L L +  ++    D     
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT---SDNCRDL 219

Query: 454 DRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGE-----LPSFFKSCSQLILMD 508
             +    +A+               S++ L+L +N L         P      S+L  + 
Sbjct: 220 CGI----VASK-------------ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 509 LGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIP 568
           + + G++ +    +   L        ++ +              ++ L L+ N +     
Sbjct: 263 IWECGITAKGCGDLCRVL--------RAKES-------------LKELSLAGNELG---D 298

Query: 569 KCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQH-----EYRSTL 623
           +          +    L                  +V +   T     H          L
Sbjct: 299 EGARLLCETLLEPGCQL---------------ESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 624 GLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQ 683
                L  S N+L           V  +   L +                L  L L+   
Sbjct: 344 ---LELQISNNRLEDAG-------VRELCQGLGQPG------------SVLRVLWLADCD 381

Query: 684 F----VGGIPSSLCQLSRLSVMNLSYNNLS 709
                   + ++L     L  ++LS N L 
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 6e-07
 Identities = 82/444 (18%), Positives = 142/444 (31%), Gaps = 92/444 (20%)

Query: 178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN 237
             + +L +    LS + +  L  +  +  V+ LD   L  +  +            L  N
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-------LRVN 55

Query: 238 E-LEELFLGKNRLNGTINQWLSRM-----YKLDALSLSGNSLTGVVTE---SVFSELSNL 288
             L EL L  N L       + +       K+  LSL    LTG       S    L  L
Sbjct: 56  PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 115

Query: 289 KALHLDDNSFT----------LKFSHDWIPPFQLIIILLGSCQMGP----HFPKWLQTQN 334
           + LHL DN             L          +L  + L  C +           L+ + 
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQ-----CRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 335 QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSN 394
             + L +S+  I++            +    L ++    +L  L L       S  ++S+
Sbjct: 171 DFKELTVSNNDINEAG-------VRVLCQG-LKDSPC--QLEALKL------ESCGVTSD 214

Query: 395 YFEGLIPPLPSNASV--LNLSRNKFS-ESISFLCSINGH---KLEFLDLSNNILSGRLPD 448
               L   + S AS+  L L  NK     ++ LC    H   +L  L +    ++     
Sbjct: 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT---AK 271

Query: 449 CWMQF-------DRLAVLSLANNFFSGK----IPKSMGFLH-SIQTLSLYNNSL----IG 492
                       + L  LSLA N    +    + +++      +++L + + S       
Sbjct: 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331

Query: 493 ELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGL----PKLVVLSLKSNKFHGNIPFQVC 548
              S       L+ + +  N L       + +GL      L VL L       ++    C
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC----DVSDSSC 387

Query: 549 Q--------LSYIQILDLSLNNIS 564
                       ++ LDLS N + 
Sbjct: 388 SSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 68/400 (17%), Positives = 121/400 (30%), Gaps = 86/400 (21%)

Query: 377 NLSLRFDPFSSSIDISSNYF--EGLIPPLPSNASV--LNLSRNKFSE-SISFLCSI--NG 429
           +L ++      S+DI             LP       + L     +E     + S     
Sbjct: 2   SLDIQ------SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN 55

Query: 430 HKLEFLDLSNNILSG----------RLPDCWMQFDRLAVLSLANNFFSGK----IPKSMG 475
             L  L+L +N L            + P C     ++  LSL N   +G     +  ++ 
Sbjct: 56  PALAELNLRSNELGDVGVHCVLQGLQTPSC-----KIQKLSLQNCCLTGAGCGVLSSTLR 110

Query: 476 FLHSIQTLSLYNNSLIGE-----LPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGL---P 527
            L ++Q L L +N L                 +L  + L    LS      +   L   P
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 528 KLVVLSLKSNKFHGN--------IPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQ 579
               L++ +N  +          +    CQL   + L L    ++        +  G+  
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQL---EALKLESCGVT---SDNCRDLCGIVA 224

Query: 580 KSSS--NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLS 637
             +S   LA+ SN      G+  L   + +                  ++ L      ++
Sbjct: 225 SKASLRELALGSNK-LGDVGMAELCPGLLHPSSR--------------LRTLWIWECGIT 269

Query: 638 ----GTIPEEIMDLVGLVALNLSRNNLTGQITPKI-----DQLKSLDFLDLSQNQF---- 684
               G +   +     L  L+L+ N L  +    +     +    L+ L +    F    
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329

Query: 685 VGGIPSSLCQLSRLSVMNLSYNNL--SGKIPLGTQLQSFN 722
                S L Q   L  + +S N L  +G   L   L    
Sbjct: 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 9e-12
 Identities = 40/245 (16%), Positives = 73/245 (29%), Gaps = 31/245 (12%)

Query: 57  LVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPI 116
            V  +               L   +LS      + +   + S  +L+ L   +      I
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVE--KSTVLQSELESCKELQELEPENKWCLLTI 388

Query: 117 PSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFS 176
              +  L  L Y   +    +     L+ +D + +    +L    L       + + +  
Sbjct: 389 ILLMRALDPLLYEKETLQYFST----LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR 444

Query: 177 TSSLGALYLFENSLSSSIYPWLFNIS--SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYL 234
                 L+L    L+      L ++     +  LDL  N L+ +L      +  L  L  
Sbjct: 445 V-----LHLAHKDLTV-----LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQA 493

Query: 235 GFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLD 294
             N LE +              ++ + +L  L L  N L              L  L+L 
Sbjct: 494 SDNALENV------------DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 295 DNSFT 299
            NS  
Sbjct: 542 GNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 8e-10
 Identities = 63/355 (17%), Positives = 115/355 (32%), Gaps = 28/355 (7%)

Query: 380 LRFDPFSSSIDISSNYFEGLI--PPLPSNASVLNLSRNKFSESISFLCSINGHK-----L 432
              DP   S   +  Y   L+           +++SR +   S+ F   +         L
Sbjct: 219 FFTDPNDQS---AWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLL 275

Query: 433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSL-- 490
             +D +   +  R PD   +   + +  L     + ++P+    +    + S     L  
Sbjct: 276 LMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLK 335

Query: 491 --IGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVC 548
                      +  QL   +L     +  + + + E   +L  L  ++      I   + 
Sbjct: 336 DRPECWCRDSATDEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIILLMR 393

Query: 549 QLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNV 608
            L  +     +L   S +          +    S  L   S    E   +  L  ++ + 
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL--HLAHK 451

Query: 609 VLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI 668
            LT       +   L LV  LD S N+L   +P  +  L  L  L  S N L       +
Sbjct: 452 DLT----VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDGV 504

Query: 669 DQLKSLDFLDLSQNQFVGGIPS--SLCQLSRLSVMNLSYNNLSGKIPLGTQLQSF 721
             L  L  L L  N+ +    +   L    RL ++NL  N+L  +  +  +L   
Sbjct: 505 ANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 18/176 (10%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYL 129
            +L +  L  L   +         + +  +       L S              + ++ L
Sbjct: 388 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL-KMEYADVRVL 446

Query: 130 DLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENS 189
            L++ +L      L  +++L  +  L+L H  L   +P  L  L      L  L   +N+
Sbjct: 447 HLAHKDLTV----LCHLEQLLLVTHLDLSHNRLR-ALPPALAAL----RCLEVLQASDNA 497

Query: 190 LSSSIYPWLFNISS--KLVVLDLDSNLLQG-SLLEPFDRMVSLRTLYLGFNELEEL 242
           L +     +  +++  +L  L L +N LQ  + ++P      L  L L  N L + 
Sbjct: 498 LEN-----VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 27/179 (15%), Positives = 70/179 (39%), Gaps = 25/179 (13%)

Query: 121 GNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSL 180
             ++ L Y+ L+ IN+      L  I+   +++ L + + H      ++   ++   S+L
Sbjct: 41  AQMNSLTYITLANINVTD----LTGIEYAHNIKDLTINNIHA-----TNYNPIS-GLSNL 90

Query: 181 GALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELE 240
             L +    ++S   P L  ++  L +LD+  +    S+L   + +  + ++ L +N   
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN--- 146

Query: 241 ELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
                   +   +   L  + +L +L++  + +          +   L  L+    +  
Sbjct: 147 ------GAITDIMP--LKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 30/181 (16%), Positives = 66/181 (36%), Gaps = 24/181 (13%)

Query: 96  IGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTL 155
              +N L Y++L++          +     +K L ++ I+          I  L +L  L
Sbjct: 40  EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN----YNPISGLSNLERL 93

Query: 156 NLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLL 215
            +    +      +L  L    +SL  L +  ++   SI   +  +  K+  +DL  N  
Sbjct: 94  RIMGKDVTSDKIPNLSGL----TSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYN-G 147

Query: 216 QGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTG 275
             + + P   +  L++L + F+ + +             + +    KL+ L     ++ G
Sbjct: 148 AITDIMPLKTLPELKSLNIQFDGVHDY------------RGIEDFPKLNQLYAFSQTIGG 195

Query: 276 V 276
            
Sbjct: 196 K 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 28/203 (13%), Positives = 65/203 (32%), Gaps = 35/203 (17%)

Query: 524 EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS 583
                 +   L  +           Q++ +  + L+  N++ +    +     +   + +
Sbjct: 20  STFKAYLNGLLGQSS---TANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTIN 74

Query: 584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEE 643
           N+  T+           +                   S L  ++ L      ++      
Sbjct: 75  NIHATN--------YNPI-------------------SGLSNLERLRIMGKDVTSDKIPN 107

Query: 644 IMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNL 703
           +  L  L  L++S +     I  KI+ L  ++ +DLS N  +  I   L  L  L  +N+
Sbjct: 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNI 166

Query: 704 SYNNLSGKIPLG--TQLQSFNAS 724
            ++ +     +    +L    A 
Sbjct: 167 QFDGVHDYRGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 11/126 (8%)

Query: 67  ISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRL 126
            +P +  L +L  L +   D +  +IP  +  L  L  L +S +  +  I +++  L ++
Sbjct: 81  YNP-ISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLF 186
             +DLSY         +  +  LP L++LN++   +      D   +      L  LY F
Sbjct: 139 NSIDLSYNGAITD---IMPLKTLPELKSLNIQFDGV-----HDYRGIEDFP-KLNQLYAF 189

Query: 187 ENSLSS 192
             ++  
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 23/164 (14%)

Query: 410 LNLSRNKFS--ESISFLCSINGHKLEFLDLSNNILS-----GRLPDCWMQFDRLAVLSLA 462
           + L+    +    I +      H ++ L ++N   +       L         L  L + 
Sbjct: 49  ITLANINVTDLTGIEYA-----HNIKDLTINNIHATNYNPISGLS-------NLERLRIM 96

Query: 463 NNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWI 522
               +     ++  L S+  L + +++    + +   +  ++  +DL  NG   +I    
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL- 155

Query: 523 GEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI 566
            + LP+L  L+++ +  H     +      +  L      I G 
Sbjct: 156 -KTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 30/208 (14%), Positives = 69/208 (33%), Gaps = 36/208 (17%)

Query: 503 QLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNN 562
             +   LG++  +          +  L  ++L +         +      I+ L ++  +
Sbjct: 24  AYLNGLLGQSSTANITE----AQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIH 77

Query: 563 ISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRST 622
            +   P  ++  + + +       +TS+       I  L                   S 
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSD------KIPNL-------------------SG 110

Query: 623 LGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQN 682
           L  + +LD S +    +I  +I  L  + +++LS N     I P +  L  L  L++  +
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFD 169

Query: 683 QFVGGIPSSLCQLSRLSVMNLSYNNLSG 710
             V      +    +L+ +      + G
Sbjct: 170 G-VHDY-RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 57/207 (27%)

Query: 477 LHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS 536
           ++S+  ++L N + + +L +  +    +  + +     +   P     GL  L  L +  
Sbjct: 43  MNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNPI---SGLSNLERLRIMG 97

Query: 537 NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQ 596
                +    +  L+ + +LD+S +     I   +N            +           
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP--------KV----------- 138

Query: 597 GIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLS 656
                                           +D S N     I   +  L  L +LN+ 
Sbjct: 139 ------------------------------NSIDLSYNGAITDI-MPLKTLPELKSLNIQ 167

Query: 657 RNNLTGQITPKIDQLKSLDFLDLSQNQ 683
            + +       I+    L+ L      
Sbjct: 168 FDGVHD-YRG-IEDFPKLNQLYAFSQT 192

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 58/206 (28%), Positives = 85/206 (41%), Gaps = 40/206 (19%)

Query: 102 LRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRII-----DKLPSLRTLN 156
            + L L S +           L++L+ L L+    NK    L+ +      +L +L TL 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND---NK----LQTLPAGIFKELKNLETLW 91

Query: 157 LEHCHL---PPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSN 213
           +    L   P  +   L        +L  L L  N L S + P +F+  +KL  L L  N
Sbjct: 92  VTDNKLQALPIGVFDQL-------VNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYN 143

Query: 214 LLQGSLLEP---FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSG 270
            LQ SL  P   FD++ SL+ L L  N+L+ +  G             ++ +L  L L  
Sbjct: 144 ELQ-SL--PKGVFDKLTSLKELRLYNNQLKRVPEGA----------FDKLTELKTLKLDN 190

Query: 271 NSLTGVVTESVFSELSNLKALHLDDN 296
           N L  V  E  F  L  LK L L +N
Sbjct: 191 NQLKRV-PEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 73  KLYHLRHLDLSENDFSGSRIPE--FIGSLNKLRYLSLSSAEFEGPIPSQL-GNLSRLKYL 129
           +L  LR L L++N      +P   F   L  L  L ++  + +  +P  +   L  L  L
Sbjct: 59  RLTKLRLLYLNDNKLQT--LPAGIFKE-LKNLETLWVTDNKLQA-LPIGVFDQLVNLAEL 114

Query: 130 DLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENS 189
            L    L       R+ D L  L  L+L +  L   +P  +       +SL  L L+ N 
Sbjct: 115 RLDRNQLKSLPP--RVFDSLTKLTYLSLGYNELQ-SLPKGVFD---KLTSLKELRLYNNQ 168

Query: 190 LSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN 237
           L   +    F+  ++L  L LD+N L+      FD +  L+ L L  N
Sbjct: 169 LKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)

Query: 77  LRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQL-GNLSRLKYLDLSYIN 135
            + LDL  N  S      F   L KLR L L+  + +  +P+ +   L  L+ L ++   
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHR-LTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK 96

Query: 136 LNKSRDWLRIIDKLPSLRTLNLEHCH---LPPIIPSDLLHLNFSTSSLGALYLFENSLSS 192
           L ++   + + D+L +L  L L+      LPP +   L       + L  L L  N L S
Sbjct: 97  L-QALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSL-------TKLTYLSLGYNELQS 147

Query: 193 SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEEL 242
            +   +F+  + L  L L +N L+      FD++  L+TL L  N+L+ +
Sbjct: 148 -LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 13/182 (7%)

Query: 400 IPP-LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLA- 457
           IP  +P++   L+L  NK S S+         KL  L L++N L   LP     F  L  
Sbjct: 31  IPSNIPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT-LPA--GIFKELKN 86

Query: 458 --VLSLANNFFSGKIPKSM-GFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGL 514
              L + +N     +P  +   L ++  L L  N L    P  F S ++L  + LG N L
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 515 SGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVC-QLSYIQILDLSLNNISGIIPKCLNN 573
              +P  + + L  L  L L +N+    +P     +L+ ++ L L  N +  +     ++
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 574 FT 575
             
Sbjct: 204 LE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 19/116 (16%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFN--------------ELEELF 243
           NI +    LDL SN L    L    F R+  LR LYL  N               LE L+
Sbjct: 34  NIPADTKKLDLQSNKLSS--LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91

Query: 244 LGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
           +  N+L         ++  L  L L  N L   +   VF  L+ L  L L  N   
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ 146

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 50/230 (21%), Positives = 76/230 (33%), Gaps = 54/230 (23%)

Query: 479 SIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNK 538
             + L L +N L       F   ++L L+ L  N L   +P  I + L  L  L +  NK
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 539 FHGNIPFQV-CQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQG 597
               +P  V  QL  +  L L  N +  + P+    F  + +                  
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRV---FDSLTK------------------ 134

Query: 598 IEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMD-LVGLVALNLS 656
                       LT+                L    N+L  ++P+ + D L  L  L L 
Sbjct: 135 ------------LTY----------------LSLGYNELQ-SLPKGVFDKLTSLKELRLY 165

Query: 657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN 706
            N L        D+L  L  L L  NQ       +   L +L ++ L  N
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 20/122 (16%)

Query: 623 LGLVKILDFSMNKLSGTIPEEIMD-LVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLS 680
           L  +++L  + NKL  T+P  I   L  L  L ++ N L   +   + DQL +L  L L 
Sbjct: 60  LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 681 QNQFV---GGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPL 737
           +NQ       +  SL +L+ L   +L YN          +LQS    V+     L  L L
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYL---SLGYN----------ELQSLPKGVFDKLTSLKELRL 164

Query: 738 RN 739
            N
Sbjct: 165 YN 166

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 20/132 (15%)

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNE-- 238
           + L +N++   I P  F+   KL  +DL +N +    L P  F  + SL +L L  N+  
Sbjct: 37  IRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISE--LAPDAFQGLRSLNSLVLYGNKIT 93

Query: 239 ------------LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELS 286
                       L+ L L  N++N         ++ L+ LSL  N L  +  +  FS L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLR 152

Query: 287 NLKALHLDDNSF 298
            ++ +HL  N F
Sbjct: 153 AIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 17/121 (14%)

Query: 122 NLSRLKYLDLSYINLNKSRDWLRII-----DKLPSLRTLNLEHCHLPPIIPSDLLHLNFS 176
              +L+ +DLS    N+    +  +       L SL +L L    +  +  S    L   
Sbjct: 54  PYKKLRRIDLSN---NQ----ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL--- 103

Query: 177 TSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGF 236
             SL  L L  N ++  +    F     L +L L  N LQ      F  + +++T++L  
Sbjct: 104 -FSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

Query: 237 N 237
           N
Sbjct: 162 N 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 15/125 (12%)

Query: 147 DKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLV 206
                LR ++L +  +  + P     L     SL +L L+ N ++  +   LF     L 
Sbjct: 53  SPYKKLRRIDLSNNQISELAPDAFQGL----RSLNSLVLYGNKITE-LPKSLFEGLFSLQ 107

Query: 207 VLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDAL 266
           +L L++N +    ++ F  + +L  L L  N+L+ +  G            S +  +  +
Sbjct: 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT----------FSPLRAIQTM 157

Query: 267 SLSGN 271
            L+ N
Sbjct: 158 HLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 45/166 (27%), Positives = 64/166 (38%), Gaps = 33/166 (19%)

Query: 400 IPP-LPSNASVLNLSRNKFS--ESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRL 456
           IP  LP   + + L +N        +F       KL  +DLSNN +S             
Sbjct: 26  IPTNLPETITEIRLEQNTIKVIPPGAF---SPYKKLRRIDLSNNQIS------------- 69

Query: 457 AVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPS-FFKSCSQLILMDLGKNGLS 515
               LA + F G        L S+ +L LY N +  ELP   F+    L L+ L  N ++
Sbjct: 70  ---ELAPDAFQG--------LRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN 117

Query: 516 GEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLN 561
             +     + L  L +LSL  NK           L  IQ + L+ N
Sbjct: 118 -CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 626 VKILDFSMNKLSGTIPEEIMD-LVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQ 683
           +  +    N +   IP         L  ++LS N ++ ++ P     L+SL+ L L  N+
Sbjct: 34  ITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 684 FVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT 716
                 S    L  L ++ L+ N ++  + +  
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKIN-CLRVDA 123

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 40/209 (19%), Positives = 71/209 (33%), Gaps = 35/209 (16%)

Query: 94  EFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR 153
                L      +L        +      LS ++  +    N+      L  +    +L+
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS----LAGMQFFTNLK 66

Query: 154 TLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISS-KLVVLDLDS 212
            L+L H  +  +  S L  L    + L  L +  N L +     L  I S  L  L LD+
Sbjct: 67  ELHLSHNQISDL--SPLKDL----TKLEELSVNRNRLKN-----LNGIPSACLSRLFLDN 115

Query: 213 NLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNS 272
           N L+    +    + +L  L +  N+L+ +              L  + KL+ L L GN 
Sbjct: 116 NELRD--TDSLIHLKNLEILSIRNNKLKSI------------VMLGFLSKLEVLDLHGNE 161

Query: 273 LTGVVTESVFSELSNLKALHLDDNSFTLK 301
           +T        + L  +  + L       +
Sbjct: 162 ITNT---GGLTRLKKVNWIDLTGQKCVNE 187

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 34/234 (14%), Positives = 72/234 (30%), Gaps = 66/234 (28%)

Query: 69  PSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSS---AEFEGPIPSQLGNLSR 125
            S  +L  +++ +   ++     +   +     L+ L LS    ++        L +L++
Sbjct: 35  VSQKELSGVQNFNGDNSNI--QSL-AGMQFFTNLKELHLSHNQISDLSP-----LKDLTK 86

Query: 126 LKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYL 185
           L+ L ++    N+       +  L  + +  L                         L+L
Sbjct: 87  LEELSVNR---NR-------LKNLNGIPSACLSR-----------------------LFL 113

Query: 186 FENSLSSSIYPWLFNISS--KLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELF 243
             N L         ++     L +L + +N L    +     +  L  L L  NE+    
Sbjct: 114 DNNELRD-----TDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNT- 165

Query: 244 LGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNS 297
                        L+R+ K++ + L+G             EL     +   D  
Sbjct: 166 -----------GGLTRLKKVNWIDLTGQKCVN-EPVKYQPELYITNTVKDPDGR 207

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 42/214 (19%)

Query: 71  LLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSS---AEFEG------------- 114
           +    +L+ L LS N    S +   +  L KL  LS++        G             
Sbjct: 59  MQFFTNLKELHLSHNQI--SDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115

Query: 115 ---PIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLL 171
                   L +L  L+ L +    L      + ++  L  L  L+L    +       L 
Sbjct: 116 NELRDTDSLIHLKNLEILSIRNNKLKS----IVMLGFLSKLEVLDLHGNEITNT--GGLT 169

Query: 172 HLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQ-------GSLLEP-- 222
            L      +  + L      +    +   +     V D D   +        GS ++   
Sbjct: 170 RL----KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCV 225

Query: 223 -FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQ 255
            ++  V    +   F+E   +   +   +GT+ Q
Sbjct: 226 LWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQ 259

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 38/268 (14%), Positives = 80/268 (29%), Gaps = 39/268 (14%)

Query: 220 LEPFDRMVSLRTLYLGFNE------------LEELFLGKNRLNGTINQWLSRMYKLDALS 267
           + P   + +     LG               ++      + +       +     L  L 
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELH 69

Query: 268 LSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFP 327
           LS N ++ +   S   +L+ L+ L ++ N      + + IP   L  + L + ++     
Sbjct: 70  LSHNQISDL---SPLKDLTKLEELSVNRNRLK---NLNGIPSACLSRLFLDNNEL--RDT 121

Query: 328 KWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK-----GKLPNLSLRF 382
             L     +E+L I +  +   V      LS  +   +L  N I       +L  +    
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIVM--LGFLSK-LEVLDLHGNEITNTGGLTRLKKV---- 174

Query: 383 DPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNIL 442
               + ID++                + N  ++     IS     NG       +   + 
Sbjct: 175 ----NWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELP 230

Query: 443 SGRLPDCWMQFDRLAVLSLANNFFSGKI 470
                +   +F     +      F G +
Sbjct: 231 VY-TDEVSYKFSEYINVGETEAIFDGTV 257

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 36/203 (17%), Positives = 70/203 (34%), Gaps = 40/203 (19%)

Query: 524 EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS 583
            GL   V  +L        +  +  +LS +Q  +   +NI  +    +  FT + +   S
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLS 71

Query: 584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEE 643
           +  I+         +  L+                    L  ++ L  + N+L       
Sbjct: 72  HNQISD--------LSPLKD-------------------LTKLEELSVNRNRLKNL---N 101

Query: 644 IMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNL 703
            +    L  L L  N L       +  LK+L+ L +  N+        L  LS+L V++L
Sbjct: 102 GIPSACLSRLFLDNNELR-DTDS-LIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDL 157

Query: 704 SYNNLSGKIPLG--TQLQSFNAS 724
             N ++    L    ++   + +
Sbjct: 158 HGNEITNTGGLTRLKKVNWIDLT 180

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 40/226 (17%), Positives = 73/226 (32%), Gaps = 23/226 (10%)

Query: 74  LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQ-LGNLSRLKYLDLS 132
              L  +++S+ND       +   +L KL  + +  A     I  +   NL  L+YL +S
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 133 YINLNKSRDWLRIIDKLPSLRTLNLEH-CHLPPIIPSDLLHLNFSTSSLGALYLFENSLS 191
              +    D             L+++   ++  I  +  + L   +     L+L +N + 
Sbjct: 113 NTGIKHLPD--VHKIHSLQKVLLDIQDNINIHTIERNSFVGL---SFESVILWLNKNGI- 166

Query: 192 SSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNG 251
             I+   FN +    +   D+N L+    + F        L +    +  L         
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY------ 220

Query: 252 TINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNS 297
                L  + KL A S                +L  L    L   S
Sbjct: 221 ----GLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 44/213 (20%), Positives = 71/213 (33%), Gaps = 16/213 (7%)

Query: 378 LSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDL 437
           L            I    F G       +   + +S+N   E I      N  KL  + +
Sbjct: 35  LRFVLTKLRV---IQKGAFSGF-----GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 438 SN-NILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGF-LHSIQTLSLYNNSLIGELP 495
              N L    P+ +     L  L ++N      +P            L + +N  I  + 
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 496 --SFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQ-LSY 552
             SF     + +++ L KNG+  EI      G     +    +N     +P  V    S 
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASG 203

Query: 553 IQILDLSLNNISGIIPKCLNNFTGMAQKSSSNL 585
             ILD+S   I  +    L N   +  +S+ NL
Sbjct: 204 PVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 37/205 (18%), Positives = 63/205 (30%), Gaps = 34/205 (16%)

Query: 116 IPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDK-----LPSLRTLNLEHCHLPPIIPSDL 170
           IPS L        L        K    LR+I K        L  + +    +  +I +D+
Sbjct: 24  IPSDL--PRNAIELRFVL---TK----LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 171 LHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLR 230
                +   L  + + + +    I P  F     L  L + +  ++          +   
Sbjct: 75  FS---NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131

Query: 231 TLYLGFN----------------ELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLT 274
            L +  N                E   L+L KN +   I+       +LD L+LS N+  
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNL 190

Query: 275 GVVTESVFSELSNLKALHLDDNSFT 299
             +   VF   S    L +      
Sbjct: 191 EELPNDVFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 46/279 (16%), Positives = 81/279 (29%), Gaps = 59/279 (21%)

Query: 236 FNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDD 295
                EL     +L        S    L+ + +S N +  V+   VFS L  L  + ++ 
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 296 NSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFW 355
                                                 N +  ++          P+ F 
Sbjct: 89  A-------------------------------------NNLLYIN----------PEAFQ 101

Query: 356 DLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPP-----LPSNASVL 410
           +L + +    +SN  IK  LP++          +DI  N     I       L   + +L
Sbjct: 102 NLPN-LQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159

Query: 411 NLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKI 470
            L++N     I           E     NN L     D +       +L ++        
Sbjct: 160 WLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218

Query: 471 PKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL 509
              +  L  ++  S YN     +LP+  +    L+   L
Sbjct: 219 SYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 39/255 (15%), Positives = 73/255 (28%), Gaps = 55/255 (21%)

Query: 456 LAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF-FKSCSQLILMDLGK-NG 513
              L             +      ++ + +  N ++  + +  F +  +L  + + K N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 514 LSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNN 573
           L   I     + LP L  L + +                  +LD+  N     I +  N+
Sbjct: 92  LL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--NS 148

Query: 574 FTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSM 633
           F G++ +S                                              IL  + 
Sbjct: 149 FVGLSFES---------------------------------------------VILWLNK 163

Query: 634 NKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQFV---GGIP 689
           N +   I     +   L  LNLS NN   ++   +         LD+S+ +         
Sbjct: 164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222

Query: 690 SSLCQLSRLSVMNLS 704
            +L +L   S  NL 
Sbjct: 223 ENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 42/238 (17%), Positives = 83/238 (34%), Gaps = 25/238 (10%)

Query: 336 IEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK--------GKLPNL-SLRFDPFS 386
              L      +       F      +    +S N +           LP L  +R +  +
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 387 SSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRL 446
           + + I+   F+ L      N   L +S       +  +  I+  +   LD+ +NI    +
Sbjct: 91  NLLYINPEAFQNL-----PNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 447 PDCWMQ--FDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF-FKSCSQ 503
                        +L L  N    +I  S      +  L+L +N+ + ELP+  F   S 
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203

Query: 504 LILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLN 561
            +++D+ +  +   +P++  E L KL   S  + K       +  +L  +    L+  
Sbjct: 204 PVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLP--TLE--KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 40/224 (17%), Positives = 64/224 (28%), Gaps = 32/224 (14%)

Query: 383 DPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSE--SISFLCSINGHKLEFLDLSNN 440
              +       +    +   LP NA  L     K       +F        LE +++S N
Sbjct: 8   HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAF---SGFGDLEKIEISQN 64

Query: 441 ILSGRLPDCWMQFDRLAVL------------SLANNFFSGKIPKSMGFLHSIQTLSLYNN 488
            +   +      F  L  L             +    F          L ++Q L + N 
Sbjct: 65  DVLEVIEADV--FSNLPKLHEIRIEKANNLLYINPEAFQN--------LPNLQYLLISNT 114

Query: 489 SLIGELPSF-FKSCSQLILMDLGKNGLSGEIPTWIGEGLP-KLVVLSLKSNKFHGNIPFQ 546
             I  LP        Q +L+D+  N     I      GL  + V+L L  N     I   
Sbjct: 115 G-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNS 172

Query: 547 VCQ-LSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589
                   ++     NN+  +     +  +G      S   I S
Sbjct: 173 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 621 STLGLVKILDFSMNKLSGTIPEEI-MDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLD 678
           S  G ++ ++ S N +   I  ++  +L  L  + + + N    I P+    L +L +L 
Sbjct: 51  SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110

Query: 679 LSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT 716
           +S                +  ++++  N     I   +
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 15/119 (12%)

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELE 240
           L L  N  +      +F    +L  ++  +N +    +E   F+    +  + L  N LE
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSNRLE 94

Query: 241 ELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
            +                 +  L  L L  N +T  V    F  LS+++ L L DN  T
Sbjct: 95  NVQHKM----------FKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 19/151 (12%)

Query: 150 PSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLD 209
                L L +     +  + +         L  +    N ++  I    F  +S +  + 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFK---KLPQLRKINFSNNKITD-IEEGAFEGASGVNEIL 87

Query: 210 LDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALS 267
           L SN L+   ++   F  + SL+TL L  N +  +       N +       +  +  LS
Sbjct: 88  LTSNRLEN--VQHKMFKGLESLKTLMLRSNRITCV------GNDS----FIGLSSVRLLS 135

Query: 268 LSGNSLTGVVTESVFSELSNLKALHLDDNSF 298
           L  N +T  V    F  L +L  L+L  N F
Sbjct: 136 LYDNQITT-VAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 31/158 (19%)

Query: 80  LDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKS 139
           L L+ N+F+          L +LR ++ S+ +            S +  + L+  N  ++
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-NRLEN 95

Query: 140 RDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLF 199
               ++   L SL+TL L    +                             + +    F
Sbjct: 96  VQH-KMFKGLESLKTLMLRSNRI-----------------------------TCVGNDSF 125

Query: 200 NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN 237
              S + +L L  N +       FD + SL TL L  N
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 26/142 (18%)

Query: 400 IPP-LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAV 458
           IP  +P   + L L+ N+F+   +        +L  ++ SNN ++               
Sbjct: 26  IPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--------------- 70

Query: 459 LSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEI 518
             +    F G           +  + L +N L       FK    L  + L  N ++  +
Sbjct: 71  -DIEEGAFEG--------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CV 120

Query: 519 PTWIGEGLPKLVVLSLKSNKFH 540
                 GL  + +LSL  N+  
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 15/117 (12%)

Query: 626 VKILDFSMNKLSGTIPEEIMD-LVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQ 683
              L  + N+ +      I   L  L  +N S N +T  I     +    ++ + L+ N+
Sbjct: 34  TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR 92

Query: 684 FVGGIPSSLCQ-LSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRN 739
               +   + + L  L  + L  N          ++       + G   +  L L +
Sbjct: 93  LE-NVQHKMFKGLESLKTLMLRSN----------RITCVGNDSFIGLSSVRLLSLYD 138

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 41/225 (18%)

Query: 80  LDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFE--GPIPSQLGNLSRLKYLDLSYINLN 137
            +L +   +          LN +  +  ++++ +    I      L  ++YL L    L+
Sbjct: 24  ANLKKKSVT--DAVTQNE-LNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLH 76

Query: 138 KSRDWLRIIDKLPSLRTLNLEH---CHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSI 194
                +  + +L +L  L L       LP  +   L       ++L  L L EN L S +
Sbjct: 77  D----ISALKELTNLTYLILTGNQLQSLPNGVFDKL-------TNLKELVLVENQLQS-L 124

Query: 195 YPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGK-NRLNG 251
              +F+  + L  L+L  N LQ   L    FD++ +L  L L +N+L+ L  G  ++L  
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT- 181

Query: 252 TINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
                     +L  L L  N L   V + VF  L++L+ + L DN
Sbjct: 182 ----------QLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 24/148 (16%)

Query: 162 LPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWL----------FNISSKLVVLDLD 211
            P    ++ +  N    S+       N L+S                      +  L L 
Sbjct: 13  FPDDAFAETIKANLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALG 71

Query: 212 SNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGN 271
            N L    +     + +L  L L  N+L+ L  G       +   L+    L  L L  N
Sbjct: 72  GNKLHD--ISALKELTNLTYLILTGNQLQSLPNG-------VFDKLT---NLKELVLVEN 119

Query: 272 SLTGVVTESVFSELSNLKALHLDDNSFT 299
            L   + + VF +L+NL  L+L  N   
Sbjct: 120 QLQ-SLPDGVFDKLTNLTYLNLAHNQLQ 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 4e-10
 Identities = 88/572 (15%), Positives = 165/572 (28%), Gaps = 188/572 (32%)

Query: 1   MEEEREALLEF---------------KQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNT 45
             + R+ALLE                K  +  +  +  S+  +       +W  ++  N+
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALD--VCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 46  TGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSL-NKLRY 104
              V+ +                  L KL +    + +      S I   I S+  +LR 
Sbjct: 195 PETVLEM------------------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 105 LSLSSAEFEGPIPSQL------GNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLE 158
           L L S  +     + L       N       +LS   L  +R   ++ D L +  T +  
Sbjct: 237 L-LKSKPY----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-KQVTDFLSAATTTH-- 288

Query: 159 HCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGS 218
                  I  D   +  +        L           +L +   +    DL   +L  +
Sbjct: 289 -------ISLDHHSMTLTPDE--VKSLLLK--------YL-DCRPQ----DLPREVLTTN 326

Query: 219 LLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALS----LSGNSLT 274
              P    +S+    +     E +   ++ L  T + W  +    D L+     S N L 
Sbjct: 327 ---PR--RLSI----IA----ESI---RDGLA-TWDNW--KHVNCDKLTTIIESSLNVLE 367

Query: 275 GVVTESVFSELSNLKALHLDDNSFTLKFSHD-WIPPFQLIIILLGSCQMGPHFPKWLQTQ 333
                 +F  LS               F     IP   L+ ++            W    
Sbjct: 368 PAEYRKMFDRLS--------------VFPPSAHIPT-ILLSLI------------WFDVI 400

Query: 334 NQIEVLDISDAGISDTVPD-WFWDLSHTIADFNLSNNHIKGKLPN-------------LS 379
              +V+ + +     ++ +    + + +I    L    +K KL N             + 
Sbjct: 401 KS-DVMVVVNKLHKYSLVEKQPKESTISIPSIYLE---LKVKLENEYALHRSIVDHYNIP 456

Query: 380 LRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSN 439
             FD           YF   I          +L   +  E ++    +      FLD   
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHI--------GHHLKNIEHPERMTLFRMV------FLDFR- 501

Query: 440 NILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLY----------NNS 489
                     +++  ++   S A N        S   L+++Q L  Y             
Sbjct: 502 ----------FLE-QKIRHDSTAWN-------ASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 490 LIGELPSFFKSCSQLIL----MDLGKNGLSGE 517
           L+  +  F     + ++     DL +  L  E
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 59/343 (17%), Positives = 122/343 (35%), Gaps = 76/343 (22%)

Query: 405 SNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGR-------LPDCWMQFDRLA 457
               +L++  + F ++  F C       +  D+  +ILS           D      RL 
Sbjct: 17  QYKDILSVFEDAFVDN--FDCK------DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 458 VLSLANN------FFSGKIPKSMGFLHS-IQT--------LSLYN---NSLIGELPSFFK 499
              L+        F    +  +  FL S I+T          +Y    + L  +   F K
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 500 -SCSQLILMDLGKNGLSGEIP-TWIG-EGLP---K--LVVLSLKSNKFHGNIPFQVCQLS 551
            + S+L      +  L    P   +  +G+    K  + +    S K    + F++    
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI---F 185

Query: 552 YIQILDLSLNNISGIIPKCLNNF-TGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVL 610
           ++   +L   N    + + L      +    +S    +SN    +  I  +++ +  ++ 
Sbjct: 186 WL---NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLL- 238

Query: 611 TWKGSQHEYRSTLGLV-------KILD-FSMN-K-LSGTIPEEIMD-LVGLVALNLSRNN 659
                   Y + L LV       K  + F+++ K L  T  +++ D L      ++S ++
Sbjct: 239 ----KSKPYENCL-LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 660 LTGQITPKIDQLKSL--DFLDLSQNQFVGGIPSSLCQLSRLSV 700
            +  +TP  D++KSL   +LD         +P  +   +   +
Sbjct: 294 HSMTLTP--DEVKSLLLKYLDCR----PQDLPREVLTTNPRRL 330

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 6e-06
 Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 60/195 (30%)

Query: 1   MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCC--YWRGVRCSNTTGHVIVLDLQVLV 58
           ++ + E      +S+VD Y I  ++  +D        Y+     S    H+         
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF----YS----HI--------- 477

Query: 59  HSEPLKGTISPSLLKLYHLRHLDLSEN---------DFSGSRIPEFIGSLNKLRYLSLSS 109
                 G         +HL++++  E          DF       F+    K+R+ S ++
Sbjct: 478 ------G---------HHLKNIEHPERMTLFRMVFLDFR------FLE--QKIRHDS-TA 513

Query: 110 AEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSD 169
               G I + L  L    Y    YI  N  +    +   L  L  +  E+        +D
Sbjct: 514 WNASGSILNTLQQLK--FYKP--YICDNDPKYERLVNAILDFLPKIE-ENLICSKY--TD 566

Query: 170 LLHLNFSTSSLGALY 184
           LL +        A++
Sbjct: 567 LLRIALMAED-EAIF 580

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 8/168 (4%)

Query: 400 IPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLP-DCWMQFDRLAV 458
           IP LP +   L L       +I      N   +  + +S ++   +L    +    ++  
Sbjct: 26  IPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84

Query: 459 LSLANNFFSGKIPKSM-GFLHSIQTLSLYNNSLIGELP--SFFKSCSQLILMDLGKNGLS 515
           + + N      I       L  ++ L ++N   +   P  +   S     ++++  N   
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYM 143

Query: 516 GEIPTWIGEGLPK-LVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNN 562
             IP    +GL    + L L +N F  ++       + +  + L+ N 
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 16/176 (9%)

Query: 74  LYHLRHLDLSENDFSGSRIPE--FIGSLNKLRYLSLSSAEFEGPIPSQ-LGNLSRLKYLD 130
           L ++  + +S +  +  ++    F   L+K+ ++ + +      I    L  L  LK+L 
Sbjct: 54  LPNISRIYVSIDV-TLQQLESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111

Query: 131 LSYINLNKSRDWLRIIDKLPSLRTLNLEH-CHLPPIIPSDLLHLNFSTSSLGALYLFENS 189
           +    L    D L  +        L +    ++  I  +    L    +    L L+ N 
Sbjct: 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL---CNETLTLKLYNNG 167

Query: 190 LSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVS-LRTLYLGFNELEEL 242
             +S+  + FN  +KL  + L+ N    ++++   F  + S    L +    +  L
Sbjct: 168 F-TSVQGYAFN-GTKLDAVYLNKN-KYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 24/170 (14%)

Query: 149 LPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVL 208
           LP++  + +        + S   +   + S +  + +      + I P        L  L
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110

Query: 209 DLDSNLLQGSLLEP--FDRMVSLRTLYLGFN----------------ELEELFLGKNRLN 250
            + +  L+    +            L +  N                E   L L  N   
Sbjct: 111 GIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

Query: 251 GTINQWLSRMYKLDALSLSGNSLTGVVTESVFSEL-SNLKALHLDDNSFT 299
            ++  +     KLDA+ L+ N    V+ +  F  + S    L +   S T
Sbjct: 170 -SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 35/273 (12%), Positives = 70/273 (25%), Gaps = 70/273 (25%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL 257
           ++      L L    L    +    F  + ++  +Y+  +           L    +   
Sbjct: 28  SLPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSID---------VTLQQLESHSF 76

Query: 258 SRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILL 317
             + K+  + +        +      EL  LK L + +    +       P    +    
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM------FPDLTKVYSTD 130

Query: 318 GSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPN 377
                   F   +     +  +            + F  L +      L NN        
Sbjct: 131 ------IFFILEITDNPYMTSIP----------VNAFQGLCNETLTLKLYNNGFT----- 169

Query: 378 LSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESIS---F--LCSINGHKL 432
                        +    F G           + L++NK+   I    F  + S      
Sbjct: 170 ------------SVQGYAFNGT------KLDAVYLNKNKYLTVIDKDAFGGVYS----GP 207

Query: 433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF 465
             LD+S   ++  LP      + L  L   N +
Sbjct: 208 SLLDVSQTSVT-ALPS--KGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 32/241 (13%), Positives = 74/241 (30%), Gaps = 56/241 (23%)

Query: 475 GFLHSIQTLSLYNNSLIGELPSF-FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLS 533
               S QTL L     +  +PS  F +   +  + +  +    ++ +     L K+  + 
Sbjct: 28  SLPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 534 LKSNKFHGNIPFQVCQ-LSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYT 592
           +++ +    I     + L  ++ L +    +                             
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF-------------------------- 120

Query: 593 FERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEI-MDLVG-L 650
                +  + S                     +  IL+ + N    +IP      L    
Sbjct: 121 ---PDLTKVYS-------------------TDIFFILEITDNPYMTSIPVNAFQGLCNET 158

Query: 651 VALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQ--LSRLSVMNLSYNNL 708
           + L L  N  T  +         LD + L++N+++  I         S  S++++S  ++
Sbjct: 159 LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

Query: 709 S 709
           +
Sbjct: 218 T 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 39/253 (15%), Positives = 69/253 (27%), Gaps = 54/253 (21%)

Query: 456 LAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF-FKSCSQLILMDLGKNGL 514
              L L           +   L +I  + +  +  + +L S  F + S++  +++     
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 515 SGEIPTWIGEGLPKLVVLSLKSNKFHGNIP--FQVCQLSYIQILDLSLNNISGIIPKCLN 572
              I     + LP L  L + +       P   +V       IL+++ N     IP   N
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV--N 149

Query: 573 NFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFS 632
            F G+                                                   L   
Sbjct: 150 AFQGLC---------------------------------------------NETLTLKLY 164

Query: 633 MNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLKS-LDFLDLSQNQFVGGIPS 690
            N  + ++     +   L A+ L++N     I       + S    LD+SQ         
Sbjct: 165 NNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223

Query: 691 SLCQLSRLSVMNL 703
            L  L  L   N 
Sbjct: 224 GLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 626 VKILDFSMNKLSGTIPEEI-MDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQ 683
            + L      L  TIP     +L  +  + +S +    Q+       L  +  +++   +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 684 FVGGIPSSLCQ-LSRLSVMNLSYNNLSGKIPLGTQLQSFNA 723
            +  I     + L  L  + +    L    P  T++ S + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDI 131

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 19/117 (16%)

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELE 240
           LYL  N  +    P   +    L ++DL +N +    L    F  M  L TL L +N L 
Sbjct: 36  LYLDGNQFTLV--PKELSNYKHLTLIDLSNNRIST--LSNQSFSNMTQLLTLILSYNRLR 91

Query: 241 ELFLGK-NRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
            +     + L             L  LSL GN ++ V  E  F++LS L  L +  N
Sbjct: 92  CIPPRTFDGLK-----------SLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGAN 136

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 9e-09
 Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 21/153 (13%)

Query: 70  SLLKLYHLRHLDLSENDFSGSRIPE--FIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLK 127
           +  +L +L  L LS N  +   I    F+  +  LRYL LSS            +L  L+
Sbjct: 59  TPTRLTNLHSLLLSHNHLN--FISSEAFVP-VPNLRYLDLSSNHLHTLDEFLFSDLQALE 115

Query: 128 YLDLSYINLNKSRDWLRII-----DKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182
            L L     N     + ++     + +  L+ L L    +    P +L+        L  
Sbjct: 116 VLLLYN---NH----IVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLML 167

Query: 183 LYLFENSLSSSIYPWLFNISSKLVV--LDLDSN 213
           L L  N L   +           V   L L +N
Sbjct: 168 LDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 39/197 (19%), Positives = 73/197 (37%), Gaps = 36/197 (18%)

Query: 400 IPP-LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAV 458
           +P  LPS  ++L+LS N  S   +         L  L LS+N L+               
Sbjct: 33  VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--------------- 77

Query: 459 LSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPS-FFKSCSQLILMDLGKNGLSGE 517
             +++  F          + +++ L L +N L   L    F     L ++ L  N +   
Sbjct: 78  -FISSEAFVP--------VPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV-V 126

Query: 518 IPTWIGEGLPKLVVLSLKSNKFHGNIPFQV----CQLSYIQILDLSLNNISGIIPKCLNN 573
           +     E + +L  L L  N+     P ++     +L  + +LDLS N +  +      +
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPL---TD 182

Query: 574 FTGMAQKSSSNLAITSN 590
              +     + L + +N
Sbjct: 183 LQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 15/119 (12%)

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELE 240
           L L  N+LS     W     + L  L L  N L    +    F  + +LR L L  N L 
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 241 ELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
            L               S +  L+ L L  N +  VV  + F +++ L+ L+L  N  +
Sbjct: 102 TL------DEFL----FSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 626 VKILDFSMNKLSGTIPEEIMD-LVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQ 683
             +LD S N LS    E     L  L +L LS N+L   I+ +    + +L +LDLS N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 684 FVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT 716
                      L  L V+ L  N++   +    
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNA 131

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 47/206 (22%), Positives = 66/206 (32%), Gaps = 57/206 (27%)

Query: 266 LSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPP--FQLIIILLGSCQMG 323
           L LS N+L+ +  E   + L+NL +L L  N          I    F  +  L       
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF------ISSEAFVPVPNL------- 90

Query: 324 PHFPKWLQ-TQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRF 382
               ++L  + N +  LD             F DL   +    L NNHI           
Sbjct: 91  ----RYLDLSSNHLHTLD----------EFLFSDLQA-LEVLLLYNNHIV---------- 125

Query: 383 DPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFS--ESISFLCSINGHKLEFLDLSNN 440
                   +  N FE +     +    L LS+N+ S              KL  LDLS+N
Sbjct: 126 -------VVDRNAFEDM-----AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173

Query: 441 ILSGRLPDCWMQFDRLAV--LSLANN 464
            L         +        L L NN
Sbjct: 174 KLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 37/206 (17%), Positives = 65/206 (31%), Gaps = 58/206 (28%)

Query: 508 DLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQV-CQLSYIQILDLSLNNISGI 566
           DL  N LS     W    L  L  L L  N  +  I  +    +  ++ LDLS N++  +
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTL 103

Query: 567 IPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLV 626
                                   + F                             L  +
Sbjct: 104 ----------------------DEFLFSD---------------------------LQAL 114

Query: 627 KILDFSMNKLSGTIPEEIMD-LVGLVALNLSRNNLTGQITPKI----DQLKSLDFLDLSQ 681
           ++L    N +   +     + +  L  L LS+N ++ +   ++    ++L  L  LDLS 
Sbjct: 115 EVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSS 172

Query: 682 NQFVGGIPSSLCQLSRLSVMNLSYNN 707
           N+      + L +L       L  +N
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHN 198

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELE 240
           L L +N L       LF     LV L+L  N L G  +EP  F+    ++ L LG N+++
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--IEPNAFEGASHIQELQLGENKIK 91

Query: 241 ELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSF 298
           E+       N         +++L  L+L  N ++  V    F  L++L +L+L  N F
Sbjct: 92  EI------SNKMFL----GLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPF 138

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 50/176 (28%), Positives = 71/176 (40%), Gaps = 30/176 (17%)

Query: 127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEH---CHLPPIIPSDLLHLNFSTSSLGAL 183
           + LDL    L    D       L  L  LNL++     L   +  DL       + LG L
Sbjct: 38  EKLDLQSTGLATLSD--ATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-------TELGTL 88

Query: 184 YLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEE 241
            L  N L+S +   +F+  ++L  L L  N L+   L    FDR+  L+ L L  N+L+ 
Sbjct: 89  GLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQLQS 145

Query: 242 LFLGK-NRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
           +  G  ++L             L  LSLS N L   V    F  L  L+ + L  N
Sbjct: 146 IPAGAFDKLT-----------NLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 45/139 (32%), Positives = 59/139 (42%), Gaps = 26/139 (18%)

Query: 163 PPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP 222
           P  IP+D       T  L    L    L++ +    F   +KL  L+LD N LQ   L  
Sbjct: 30  PSGIPAD-------TEKL---DLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQT--LSA 76

Query: 223 --FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTES 280
             FD +  L TL L  N+L  L LG       +   L+   +LD L L GN L  +    
Sbjct: 77  GVFDDLTELGTLGLANNQLASLPLG-------VFDHLT---QLDKLYLGGNQLKSL-PSG 125

Query: 281 VFSELSNLKALHLDDNSFT 299
           VF  L+ LK L L+ N   
Sbjct: 126 VFDRLTKLKELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 44/160 (27%), Positives = 61/160 (38%), Gaps = 12/160 (7%)

Query: 80  LDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKS 139
           LDL     +      F G L KL +L+L   + +        +L+ L  L L+   L   
Sbjct: 40  LDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 140 RDWLRIIDKLPSLRTLNLEHCHLPPIIPS--DLLHLNFSTSSLGALYLFENSLSSSIYPW 197
                + D L  L  L L    L  +     D L      + L  L L  N L S I   
Sbjct: 99  PL--GVFDHLTQLDKLYLGGNQLKSLPSGVFDRL------TKLKELRLNTNQLQS-IPAG 149

Query: 198 LFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN 237
            F+  + L  L L +N LQ      FDR+  L+T+ L  N
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 14/102 (13%)

Query: 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQFV 685
           + LD     L+         L  L  LNL  N L   ++  + D L  L  L L+ NQ  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 686 ---GGIPSSLCQLSRLSVMNLSYNNLSGKIPLG-----TQLQ 719
               G+   L QL +L    L  N L   +P G     T+L+
Sbjct: 97  SLPLGVFDHLTQLDKL---YLGGNQLK-SLPSGVFDRLTKLK 134

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 47/256 (18%), Positives = 80/256 (31%), Gaps = 42/256 (16%)

Query: 43  SNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKL 102
            + TG ++   +                    + ++H+DLS +    S +   +   +KL
Sbjct: 61  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120

Query: 103 RYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHL 162
           + LSL       PI + L   S L  L+LS  +         ++     L  LNL  C  
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF- 179

Query: 163 PPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLD---SNLLQGSL 219
                      +F+   +                 + ++S  +  L+L     NL +  L
Sbjct: 180 -----------DFTEKHVQVA--------------VAHVSETITQLNLSGYRKNLQKSDL 214

Query: 220 LEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTE 279
                R  +L  L L  +           L     Q   ++  L  LSLS       +  
Sbjct: 215 STLVRRCPNLVHLDLSDS---------VMLKNDCFQEFFQLNYLQHLSLSRCYD---IIP 262

Query: 280 SVFSELSNLKAL-HLD 294
               EL  +  L  L 
Sbjct: 263 ETLLELGEIPTLKTLQ 278

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 18/169 (10%)

Query: 101 KLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHC 160
           +   L       E  + + L  L   K+L LS  N+ K    +  +  + +LR L+L   
Sbjct: 26  EKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEK----ISSLSGMENLRILSLGRN 80

Query: 161 HLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISS--KLVVLDLDSNLLQG- 217
            +       + +L+    +L  L++  N ++S     L  I     L VL + +N +   
Sbjct: 81  LI-----KKIENLDAVADTLEELWISYNQIAS-----LSGIEKLVNLRVLYMSNNKITNW 130

Query: 218 SLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDAL 266
             ++    +  L  L L  N L   +   N  +    + + R+  L  L
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 17/120 (14%)

Query: 203 SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN-------------ELEELFLGKNRL 249
                L L +N +    +     M +LR L LG N              LEEL++  N++
Sbjct: 48  KACKHLALSTNNI--EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI 105

Query: 250 NGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPP 309
                  + ++  L  L +S N +T        + L  L+ L L  N     +  +    
Sbjct: 106 ASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 11/130 (8%)

Query: 67  ISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRL 126
           +  +L  L   +HL LS N+    +I   +  +  LR LSL     +  I +       L
Sbjct: 40  MDATLSTLKACKHLALSTNNI--EKI-SSLSGMENLRILSLGRNLIKK-IENLDAVADTL 95

Query: 127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLF 186
           + L +SY  +      L  I+KL +LR L + +  +      ++  L      L  L L 
Sbjct: 96  EELWISYNQIAS----LSGIEKLVNLRVLYMSNNKITNW--GEIDKLAALD-KLEDLLLA 148

Query: 187 ENSLSSSIYP 196
            N L +    
Sbjct: 149 GNPLYNDYKE 158

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 31/150 (20%)

Query: 163 PPIIPSD--LLHLNF------------STSSLGALYLFENSLSSSIYPWLFNISSKLVVL 208
           P  IP++  +L+L+             S  +L  LYL  N L + +   +F+  ++L VL
Sbjct: 35  PAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVL 93

Query: 209 DLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDAL 266
           DL +N L    L    FDR+V L+ L++  N+L EL  G  RL             L  L
Sbjct: 94  DLGTNQLTV--LPSAVFDRLVHLKELFMCCNKLTELPRGIERLT-----------HLTHL 140

Query: 267 SLSGNSLTGVVTESVFSELSNLKALHLDDN 296
           +L  N L   +    F  LS+L   +L  N
Sbjct: 141 ALDQNQLKS-IPHGAFDRLSSLTHAYLFGN 169

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 15/124 (12%)

Query: 68  SPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSS---AEFEGPIPSQLGNLS 124
           +         R LDL         I     +L++   +  S     + +G        L 
Sbjct: 12  AAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKLDG-----FPLLR 64

Query: 125 RLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALY 184
           RLK L ++   + +  + L     LP L  L L +  L  +   DL  L     SL  L 
Sbjct: 65  RLKTLLVNNNRICRIGEGL--DQALPDLTELILTNNSLVEL--GDLDPLASLK-SLTYLC 119

Query: 185 LFEN 188
           +  N
Sbjct: 120 ILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 21/130 (16%)

Query: 147 DKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISS--K 204
                 R L+L    +P I      +L  +     A+   +N +       L       +
Sbjct: 16  TNAVRDRELDLRGYKIPVIE-----NLGATLDQFDAIDFSDNEIRK-----LDGFPLLRR 65

Query: 205 LVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLD 264
           L  L +++N +          +  L  L L  N L EL        G ++  L+ +  L 
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL--------GDLDP-LASLKSLT 116

Query: 265 ALSLSGNSLT 274
            L +  N +T
Sbjct: 117 YLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 15/110 (13%)

Query: 203 SKLVVLDLDSNLLQGSLLEPFDR-MVSLRTLYLGFNE------------LEELFLGKNRL 249
            +   LDL    +   ++E     +     +    NE            L+ L +  NR+
Sbjct: 19  VRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRI 76

Query: 250 NGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
                     +  L  L L+ NSL  +      + L +L  L +  N  T
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 7/111 (6%)

Query: 404 PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLAN 463
                 L+L   K    I  L +    + + +D S+N +  +L D +    RL  L + N
Sbjct: 18  AVRDRELDLRGYK-IPVIENLGA-TLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73

Query: 464 NFFSGKIPKSMGFLHSIQTLSLYNNSL--IGELPSFFKSCSQLILMDLGKN 512
           N            L  +  L L NNSL  +G+L     S   L  + + +N
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 15/99 (15%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL 257
            I S    L+L+SN LQ   L    FD++  L  L L  N+++ L  G            
Sbjct: 25  GIPSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSQNQIQSLPDGV----------F 72

Query: 258 SRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
            ++ KL  L L  N L   +   VF +L+ LK L LD N
Sbjct: 73  DKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTN 110

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 39/256 (15%), Positives = 72/256 (28%), Gaps = 45/256 (17%)

Query: 67  ISPSLLKLYHLRHLDLSENDFS---GSRIPEFIGSLNKLRYLSLSS-----AEFEGPIPS 118
           +   LL+   ++ + LS N         + E I S   L     S       + E P   
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 119 Q-----LGNLSRLKYLDLSY--INLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLL 171
           +     L    +L  + LS            +  + K   L  L L +  L         
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL--------- 134

Query: 172 HLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRT 231
                        +   +L           +  L  +    N L+         M     
Sbjct: 135 ------GPQAGAKIAR-ALQELAVNKKAKNAPPLRSIICGRNRLEN------GSMKEWAK 181

Query: 232 LYLGFNELEELFLGKNRLN-----GTINQWLSRMYKLDALSLSGNSLTGVVTE---SVFS 283
            +     L  + + +N +        + + L+   +L  L L  N+ T + +        
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 284 ELSNLKALHLDDNSFT 299
              NL+ L L+D   +
Sbjct: 242 SWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 46/265 (17%), Positives = 79/265 (29%), Gaps = 66/265 (24%)

Query: 67  ISPSLLKLYHLRHLDLSENDFS---GSRIPEFIGSLNKLRYLSLS-------------SA 110
           +  +LLK   L  + LS+N F       + +F+     L +L L               A
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 111 EFEGPIPSQLGNLSRLKYLDLSYINLNKSRD-----WLRIIDKLPSLRTLNLEHCHLPPI 165
             E  +  +  N   L+ +       N+  +     W +       L T+ +    +   
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGR---NRLENGSMKEWAKTFQSHRLLHTVKMVQNGI--- 199

Query: 166 IPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLL--QG--SLLE 221
                          G  +L    L+            +L VLDL  N     G  +L  
Sbjct: 200 ------------RPEGIEHLLLEGLAY---------CQELKVLDLQDNTFTHLGSSALAI 238

Query: 222 PFDRMVSLRTLYLGFNELEE---LFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTG--- 275
                 +LR L L    L       +     +   N        L  L L  N +     
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDA-FSKLENI------GLQTLRLQYNEIELDAV 291

Query: 276 -VVTESVFSELSNLKALHLDDNSFT 299
             +   +  ++ +L  L L+ N F+
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 42/271 (15%), Positives = 75/271 (27%), Gaps = 47/271 (17%)

Query: 330 LQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSI 389
           L   + ++ + +S   I           +  +++   S   ++                 
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEA-------ARWLSENIASKKDLE----IAEFSDIFTGRVK 76

Query: 390 DISSNYFEGLIPPLPSNASV--LNLSRNKFS-ESISFLCSI--NGHKLEFLDLSNN---- 440
           D        L+  L     +  + LS N F   +   L         LE L L NN    
Sbjct: 77  DEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136

Query: 441 ----ILSGRLPDCWMQFD-----RLAVLSLANNFFSGK----IPKSMGFLHSIQTLSLYN 487
                ++  L +  +         L  +    N           K+      + T+ +  
Sbjct: 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196

Query: 488 NSLIGE-----LPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGL---PKLVVLSLKSNKF 539
           N +  E     L      C +L ++DL  N  +    + +   L   P L  L L     
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

Query: 540 --HGNIPF----QVCQLSYIQILDLSLNNIS 564
              G           +   +Q L L  N I 
Sbjct: 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 38/266 (14%), Positives = 81/266 (30%), Gaps = 44/266 (16%)

Query: 479 SIQTLSLYNNSL----IGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGL---PKLVV 531
           SI+  SL  +++       + +       +  + L  N +  E   W+ E +     L +
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 532 LSLKSNKFHGNIPFQV-----------CQLSYIQILDLSLNNISGIIPKCLNNFTGMAQK 580
                  F G +  ++            +   +  + LS N      P           K
Sbjct: 65  AEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---PTAQEPLIDFLSK 120

Query: 581 SSS--NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSG 638
            +   +L + +N     Q    +   +  + +  K         L   + +    N+L  
Sbjct: 121 HTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNA---PPL---RSIICGRNRLEN 173

Query: 639 ----TIPEEIMDLVGLVALNLSRNNLTGQ-ITPKIDQL----KSLDFLDLSQNQF----V 685
                  +       L  + + +N +  + I   + +     + L  LDL  N F     
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 686 GGIPSSLCQLSRLSVMNLSYNNLSGK 711
             +  +L     L  + L+   LS +
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 44/358 (12%), Positives = 96/358 (26%), Gaps = 76/358 (21%)

Query: 120 LGNLSRLKYLDLSYINLNKS--RDWLRIIDKLPSLRTLNLEHCHLPPI----------IP 167
           +   S ++   L    +     +    ++ +  S++ + L    +               
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 168 SDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG----SLLEPF 223
            DL    FS    G +          +   L     KL  + L  N         L++  
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK-CPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 224 DRMVSLRTLYLGFNELEE---LFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTE- 279
            +   L  LYL  N L       + +      +N+       L ++    N L     + 
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178

Query: 280 --SVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIE 337
               F     L  + +  N                    +    +     + L    +++
Sbjct: 179 WAKTFQSHRLLHTVKMVQNG-------------------IRPEGIEHLLLEGLAYCQELK 219

Query: 338 VLD-----ISDAG---ISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSI 389
           VLD      +  G   ++  +  W       + +  L++  +  +             + 
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSW-----PNLRELGLNDCLLSAR------------GAA 262

Query: 390 DISSNYFEGLIPPLPSNASVLNLSRNKFS----ESISFLCSINGHKLEFLDLSNNILS 443
            +     +            L L  N+       ++  +       L FL+L+ N  S
Sbjct: 263 AVV----DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN 135
            ++ L L  +  +  ++        +L +LS  +        + L  L++LK L+LS   
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNR 75

Query: 136 LNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIY 195
           ++   + L   +K P+L  LNL    +  +  S +  L     +L +L LF   +++   
Sbjct: 76  VSGGLEVL--AEKCPNLTHLNLSGNKIKDL--STIEPLK-KLENLKSLDLFNCEVTNLND 130

Query: 196 --PWLFNISSKLVVLD 209
               +F +  +L  LD
Sbjct: 131 YRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 203 SKLVVLDLDSN-LLQGSLLEPFDRMVSLRTLYLGFNE------------LEELFLGKNRL 249
           S +  L LD++   +G L    D    L  L                  L++L L  NR+
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV 76

Query: 250 NGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
           +G +     +   L  L+LSGN +  + T     +L NLK+L L +   T
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 122 NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLG 181
             S +K L L     N+ +    + D+   L  L+  +  L  I  ++L  LN     L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINVGLTSI--ANLPKLN----KLK 67

Query: 182 ALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG-SLLEPFDRMVSLRTLYLGFNELE 240
            L L +N +S      L      L  L+L  N ++  S +EP  ++ +L++L L   E+ 
Sbjct: 68  KLELSDNRVSG-GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

Query: 241 EL 242
            L
Sbjct: 127 NL 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 71  LLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLD 130
             +   L  L         + I   +  LNKL+ L LS     G +         L +L+
Sbjct: 38  TDEFEELEFLSTINVGL--TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 131 LSYINLNKSRDWLRIIDKLPSLRTLNLEHC 160
           LS   +      +  + KL +L++L+L +C
Sbjct: 95  LSGNKIKDLST-IEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 431 KLEFLDLSNN-ILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGF--LHSIQTLSLYN 487
            ++ L L N+    G+L     +F+ L  LS  N      +        L+ ++ L L +
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSIANLPKLNKLKKLELSD 73

Query: 488 NSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537
           N + G L    + C  L  ++L  N +         + L  L  L L + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 409 VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSG 468
            L+      + SI+ L  +N  KL+ L+LS+N +SG L     +   L  L+L+ N    
Sbjct: 46  FLSTINVGLT-SIANLPKLN--KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD 102

Query: 469 -KIPKSMGFLHSIQTLSLYNN 488
               + +  L ++++L L+N 
Sbjct: 103 LSTIEPLKKLENLKSLDLFNC 123

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 71/477 (14%), Positives = 138/477 (28%), Gaps = 56/477 (11%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEF--EGPIPSQLGNLSRLKYLDLSY 133
            L  + L     +   +     S    + L LSS E      + +       LK LDL  
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165

Query: 134 INL-NKSRDWLR-IIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLS 191
            ++ + S  WL    D   SL +LN+       +  S L  L     +L +L L      
Sbjct: 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPL 224

Query: 192 SSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNG 251
             +   L   + +L  L         +     D    L     G  EL  L    + +  
Sbjct: 225 EKLAT-LLQRAPQLEELGTGGY----TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279

Query: 252 TINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPF- 310
            +    S   +L  L+LS  ++       +  +   L+ L + D           +    
Sbjct: 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-----IEDAGLEVLA 334

Query: 311 ----QLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADF-N 365
                L  + +   +     P             +++ G+          L   +     
Sbjct: 335 STCKDLRELRVFPSEPFVMEPNVA----------LTEQGLVSVSMGC-PKLESVLYFCRQ 383

Query: 366 LSNN---HIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESIS 422
           ++N     I    PN++         + I        +   P +     +  +       
Sbjct: 384 MTNAALITIARNRPNMT------RFRLCIIEPKAPDYLTLEPLDIGFGAIVEH------- 430

Query: 423 FLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMG-FLHSIQ 481
                    L  L LS  +             ++ +LS+A    S      +     S++
Sbjct: 431 ------CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR 484

Query: 482 TLSLYNNSLIGE-LPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537
            L + +     + L +       +  + +    +S      +G+ +PKL V  +   
Sbjct: 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 66/488 (13%), Positives = 127/488 (26%), Gaps = 85/488 (17%)

Query: 76  HLRHLDLSE--------------NDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLG 121
            +R ++L                  +    I     S   L  + L            + 
Sbjct: 67  KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA 126

Query: 122 -NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSL 180
            +    K L LS      +     I     +L+ L+L    +  +    L H   + +SL
Sbjct: 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186

Query: 181 GALYL--FENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE 238
            +L +    + +S S    L      L  L L+  +    L     R   L  L  G   
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246

Query: 239 LEELFLGKNRLNGTINQWLSRMYKLDALSLSG-NSLTGVVTESVFSELSNLKALHLDDNS 297
            E      + L+  ++             LSG          +V+S  S L  L+L   +
Sbjct: 247 AEVRPDVYSGLSVALSGCKEL------RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300

Query: 298 FTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDL 357
                          ++ LL  C              +++ L + D  I D         
Sbjct: 301 VQ-----S-----YDLVKLLCQCP-------------KLQRLWVLD-YIEDA-------- 328

Query: 358 SHTIADFNLSNNHIKGKLPNL-SLRFDPFSSSIDISSNYF--EGL--IPPLPSNASVLNL 412
                        +     +L  LR  P    +   +     +GL  +         +  
Sbjct: 329 ---------GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379

Query: 413 SRNKFS-ESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIP 471
              + +  ++  +   N   +    L                D     ++  +       
Sbjct: 380 FCRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEPLDI-GFGAIVEHC------ 431

Query: 472 KSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVV 531
                   ++ LSL                 ++ ++ +   G S      +  G   L  
Sbjct: 432 ------KDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485

Query: 532 LSLKSNKF 539
           L ++   F
Sbjct: 486 LEIRDCPF 493

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 77  LRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINL 136
           +R L L     +  +I         L +LSL +        S L  L +LK L+LS   +
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRI 83

Query: 137 NKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIY- 195
               D L   +KLP+L  LNL    L  I  S L  L      L +L LF   +++    
Sbjct: 84  FGGLDML--AEKLPNLTHLNLSGNKLKDI--STLEPLKKLE-CLKSLDLFNCEVTNLNDY 138

Query: 196 -PWLFNISSKLVVLD 209
              +F +  +L  LD
Sbjct: 139 RESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 9/122 (7%)

Query: 122 NLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLG 181
             + ++ L L     N  +    +  +  +L  L+L +  L  +  S+L  L      L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKLP----KLK 74

Query: 182 ALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG-SLLEPFDRMVSLRTLYLGFNELE 240
            L L EN +       L      L  L+L  N L+  S LEP  ++  L++L L   E+ 
Sbjct: 75  KLELSENRIFG-GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

Query: 241 EL 242
            L
Sbjct: 134 NL 135

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 13/110 (11%)

Query: 203 SKLVVLDLDSNLLQGSLLEPF-DRMVSLRTLYLGFNE------------LEELFLGKNRL 249
           + +  L LD+       +E      V+L  L L                L++L L +NR+
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRI 83

Query: 250 NGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
            G ++    ++  L  L+LSGN L  + T     +L  LK+L L +   T
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 64  KGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNL 123
            G I     +  +L  L L         +   +  L KL+ L LS     G +      L
Sbjct: 38  DGKIEGLTAEFVNLEFLSLINVGL--ISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 124 SRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHC 160
             L +L+LS   L      L  + KL  L++L+L +C
Sbjct: 95  PNLTHLNLSGNKLKDIST-LEPLKKLECLKSLDLFNC 130

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 15/111 (13%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN--------------ELEELFLG 245
            I ++   LDL++N L+      FD + SL  LYLG N               L  L L 
Sbjct: 25  GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84

Query: 246 KNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
            N+L    N    ++ +L  L+L+ N L   + + VF +L+ LK L L  N
Sbjct: 85  TNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQN 134

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 30/150 (20%)

Query: 163 PPIIPSDLLHLNFST--------------SSLGALYLFENSLSSSIYPWLFNISSKLVVL 208
           P  IP+   +L+  T              +SL  LYL  N L S +   +FN  + L  L
Sbjct: 23  PTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYL 81

Query: 209 DLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDAL 266
           +L +N LQ   L    FD++  L+ L L  N+L+ L  G             ++ +L  L
Sbjct: 82  NLSTNQLQS--LPNGVFDKLTQLKELALNTNQLQSLPDGV----------FDKLTQLKDL 129

Query: 267 SLSGNSLTGVVTESVFSELSNLKALHLDDN 296
            L  N L   V + VF  L++L+ + L DN
Sbjct: 130 RLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 34/236 (14%), Positives = 72/236 (30%), Gaps = 17/236 (7%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN 135
            L  + +   DF    +  F  +   L      S   +  +P +  NL   + L    ++
Sbjct: 221 SLVSVKVG--DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 136 LNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIY 195
                +   +      +R L+L +     +   D   L     +L  L    N +     
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYA---LLETEDHCTLIQKCPNLEVLET-RNVIGDRGL 334

Query: 196 PWLFNISSKLVVLDLDSNLLQGSLLEPFDRM--VSLRTLYLGFNELEELFLGKNRLN--- 250
             L     +L  L ++    +  + +    +    L  L  G  ELE + +  + +    
Sbjct: 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394

Query: 251 -GTINQWLSRMYKLDALSLSG-NSLTGVVTESVFSEL----SNLKALHLDDNSFTL 300
             +I  +L  +     + L     +T +  ++    L      L+          L
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGK-NRLNGTINQW 256
            I +    L L++N +    LEP  FD +V+L+ LY   N+L  +  G  ++L       
Sbjct: 30  GIPTDKQRLWLNNNQITK--LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT------ 81

Query: 257 LSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
                +L  L L+ N L   +    F  L +L  ++L +N
Sbjct: 82  -----QLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 56/345 (16%), Positives = 103/345 (29%), Gaps = 57/345 (16%)

Query: 120 LGNLSRLKYLDLSYINLNKSRDWLRIIDKLP----SLRTLNLEHCHLPPIIPSDLLH-LN 174
                 +  LDLS  NL  S   + +I        S+ +LNL    L      +L+  L 
Sbjct: 18  TSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 175 FSTSSLGALYLFENSLS----SSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLR 230
              +++ +L L  N LS      +   L  I   + VLDL  N         F +  S  
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 231 TLYLGFNELEELFLGKNRLNGTINQWLSRMYK-----LDALSLSGNSLTGVVTESVFSEL 285
                   +  L L  N L    +  L ++       +++L+L GN+L       +   L
Sbjct: 137 PAS-----ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL 191

Query: 286 ----SNLKALHLDDNSFTLKFSHDWI-----PPFQLIIILLGSCQMGP----HFPKWLQT 332
               +++ +L L  N   LK   +        P  ++ + L    +      +      +
Sbjct: 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 333 QNQIEVLDISDAGISDTVPDWFWDLSH------TIADFNLSNNHI--------------- 371
              ++ + +    + +   +    L         I   + +   I               
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIREL 311

Query: 372 KGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNK 416
            GK    SL        I    +        +P        +   
Sbjct: 312 SGKADVPSLL---NQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 50/326 (15%), Positives = 107/326 (32%), Gaps = 53/326 (16%)

Query: 150 PSLRTLNLEHCHLPPIIPSDLL-HLNFSTSSLGALYLFENSLSS----SIYPWLFNISSK 204
             + +L+L   +L  I   +L+     + +S+ +L L  NSL       +   L  I + 
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 205 LVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN--ELEELFLGKNRLNGTINQWLSRMYK 262
           +  L+L  N L         +        L      +  L LG N  +   +    + + 
Sbjct: 82  VTSLNLSGNFLS-------YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 263 -----LDALSLSGNSLTGVVTESVFSEL----SNLKALHLDDNSFTLKF-----SHDWIP 308
                + +L+L GN L    ++ +   L    +N+ +L+L  N+   K            
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 309 PFQLIIILLGSCQMGPHFPKWL-----QTQNQIEVLDISDAGISDTVPDWFWDLSHTIAD 363
           P  +  + L +  +G      L        N +  L++    +              +  
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS-------LENLKL 247

Query: 364 FNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASV--LNLSRNKFS-ES 420
              S  H++     + L +D      ++S    + L    P+   +  ++ +  +     
Sbjct: 248 LKDSLKHLQ----TVYLDYDIVK---NMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 421 ISFLCSI---NGHKLEFLDLSNNILS 443
              + ++      K +   L N  L 
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLI 326

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 44/277 (15%), Positives = 83/277 (29%), Gaps = 57/277 (20%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNK----LRYLSLSSAEFEGPIPSQLG-----NLSRL 126
            +  LDLS N+       E I +       +  L+LS          +L        + +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 127 KYLDLSYINLNKSRDWLRIIDKLPS----LRTLNLEHCHLPPIIPSDLLH-LNFSTSSLG 181
             L+LS  N    +    ++  L +    +  L+L          S+     +   +S+ 
Sbjct: 83  TSLNLSG-NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 182 ALYLFENSLS----SSIYPWLFNISSKLVVLDLDSNLLQ-------GSLLEPFDRMVSLR 230
           +L L  N L       +   L  I + +  L+L  N L           L       S+ 
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA--SVT 199

Query: 231 TLYLGFNE-------------------LEELFLGKNRLNGT----INQWLSRMYKLDALS 267
           +L L  N                    +  L L  N L+G     +      +  L  + 
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259

Query: 268 LSGNSLTGVVTE------SVFSELSNLKALHLDDNSF 298
           L  + +  +  E      + F  +  +  +  +    
Sbjct: 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 41/254 (16%), Positives = 91/254 (35%), Gaps = 36/254 (14%)

Query: 76  HLRHLDLSENDFS---GSRIPEFIGSLN-KLRYLSLSSAEFEGPIPSQLGNL-----SRL 126
           ++  L+LS N  S      + + + ++   +  L L   +F     S+         + +
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140

Query: 127 KYLDLSYINLNKSRDWLRIIDKLP----SLRTLNLEHCHLPPI----IPSDLLHLNFSTS 178
             L+L   +L   +    +I  L     ++ +LNL   +L       +   L  +    +
Sbjct: 141 TSLNLRGNDLG-IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP---A 196

Query: 179 SLGALYLFENSLS----SSIYPWLFNISSKLVVLDLDSNLLQGS----LLEPFDRMVSLR 230
           S+ +L L  N L     + +     +I + +V L+L  N L G     L    D +  L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 231 TLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLT--GVVT--ESVFSELS 286
           T+YL ++ ++   + K +    +      + K+  +  +G  +     +     +     
Sbjct: 257 TVYLDYDIVKN--MSKEQCKA-LGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSG 313

Query: 287 NLKALHLDDNSFTL 300
                 L +     
Sbjct: 314 KADVPSLLNQCLIF 327

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 17/100 (17%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEP--FDRMVSLRTLYLGFNELEELFLGK-NRLNGTINQW 256
            I +   VL L  N +    LEP  FDR+  L  L L  N+L  L  G  ++L       
Sbjct: 27  GIPTTTQVLYLYDNQITK--LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT------ 78

Query: 257 LSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDN 296
                +L  LSL+ N L   +    F  L +L  + L +N
Sbjct: 79  -----QLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 633 MNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPK-IDQLKSLDFLDLSQNQFVGGIPSS 691
               +      +     L  L +        +  + +  L  L  L + ++      P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 692 LCQLSRLSVMNLSYNNLSGKIPLGT-QLQSFNASVYAGNPELC 733
                RLS +NLS+N L   +   T Q  S    V +GNP  C
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 12/155 (7%)

Query: 235 GFNELEELFLGKNRLNGTI-NQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHL 293
           G   L EL++   +    +  + L  + +L  L++  + L   V    F     L  L+L
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNL 87

Query: 294 DDNSFTLKFSHDWIPPFQLIIILLGS------CQMGPHFPKWLQTQNQIEVLDISDAGIS 347
             N+     S   +    L  ++L        C +   + +  + +    V +       
Sbjct: 88  SFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL--RWLQRWEEEGLGGVPEQKLQCHG 144

Query: 348 DTVPDWFWDLSHTIADFNLSNNHIKGKL-PNLSLR 381
                   + S  +    +   +    +  ++ LR
Sbjct: 145 QGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLR 179

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 18/106 (16%)

Query: 91  RIPEFIGSLNKLRYLSLSSAEFEGPIPSQ-LGNLSRLKYLDLSYINLNKSRDWLRIIDK- 148
                +     L  L + + +    +  + L  L  L+ L +     +     LR +   
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK---SG----LRFVAPD 74

Query: 149 ----LPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSL 190
                P L  LNL    L   +            SL  L L  N L
Sbjct: 75  AFHFTPRLSRLNLSFNAL-ESLSWKT----VQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 470 IPKSMGFLHSIQTLSLYNNSLIGELPSF-FKSCSQLILMDLGKNGLSGEIPTWIGEGLPK 528
               +    ++  L + N   +  L     +   +L  + + K+GL   +        P+
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 529 LVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLN 561
           L  L+L  N    ++ ++  Q   +Q L LS N
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 143 LRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNIS 202
           L  +    +L  L +E+      +    L        L  L + ++ L   + P  F+ +
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIVKSGLRF-VAPDAFHFT 79

Query: 203 SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNEL 239
            +L  L+L  N L+    +    + SL+ L L  N L
Sbjct: 80  PRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 203 SKLVVLDLDSNLLQGSL-LEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMY 261
             L  L +++      L L     +  LR L +  + L   F+  +  + T         
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPR------- 81

Query: 262 KLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTL 300
            L  L+LS N+L   ++      LS L+ L L  N    
Sbjct: 82  -LSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHC 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	789
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.0
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.58
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.29
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.61

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.8e-89  Score=801.28  Aligned_cols=708  Identities=30%  Similarity=0.424  Sum_probs=615.3

Q ss_pred             HHHHHHHHHHhhcCcCCCCCCCCCCCCCCCCCCCceeeeEecCCCCcEEEEEcCCCCCCCCcccc---cCccccCCCCCC
Q 042537            2 EEEREALLEFKQSLVDEYGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGT---ISPSLLKLYHLR   78 (789)
Q Consensus         2 ~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~---l~~~~~~l~~L~   78 (789)
                      ++|++|||+||+++.||. ++++|+   .+++||+|+||+|+  .++|++|+|++    ..+.|.   +|+++.++++|+
T Consensus        11 ~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~----~~l~g~~~~l~~~l~~L~~L~   80 (768)
T 3rgz_A           11 YREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS----KPLNVGFSAVSSSLLSLTGLE   80 (768)
T ss_dssp             HHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT----SCCCEEHHHHHHHTTTCTTCC
T ss_pred             HHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC----CCcCCccCccChhHhccCccc
Confidence            679999999999999998 999998   47899999999998  68999999999    788898   899999999999


Q ss_pred             EEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCc--cccCCCCCcEEeccCccCCCCcchHHhh-CCCCCCCEE
Q 042537           79 HLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPS--QLGNLSRLKYLDLSYINLNKSRDWLRII-DKLPSLRTL  155 (789)
Q Consensus        79 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~l-~~l~~L~~L  155 (789)
                      .++++.+.+.  ..|..++.+++|++|+|++|.+.+.+|.  .++++++|++|+|++|.+.+.  .|..+ .++++|++|
T Consensus        81 ~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L  156 (768)
T 3rgz_A           81 SLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP--GKVSGGLKLNSLEVL  156 (768)
T ss_dssp             EEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC--SSCCSCCCCTTCSEE
T ss_pred             ccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc--CCHHHhccCCCCCEE
Confidence            9999999876  4678899999999999999999988888  999999999999999998864  34444 889999999


Q ss_pred             EcCCCCCCCCcccccc-ccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEEC
Q 042537          156 NLEHCHLPPIIPSDLL-HLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYL  234 (789)
Q Consensus       156 ~L~~n~l~~~~~~~~~-~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  234 (789)
                      ++++|.+++..+..+. +.++  ++|++|++++|.+.+..+.   ...++|++|++++|.+.+.+|. ++++++|++|++
T Consensus       157 ~Ls~n~l~~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L  230 (768)
T 3rgz_A          157 DLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI  230 (768)
T ss_dssp             ECCSSCCEEETHHHHHHTTCC--TTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEEC
T ss_pred             ECCCCccCCcCChhhhhhccC--CCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEEC
Confidence            9999999887763211 4555  8999999999999876664   3345999999999999988777 999999999999


Q ss_pred             CCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCc-ccce
Q 042537          235 GFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPP-FQLI  313 (789)
Q Consensus       235 ~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~-~~L~  313 (789)
                      +          +|.+++.+|..++++++|++|++++|.+.+.+|.  . .+++|++|++++|++++..+..+... ++|+
T Consensus       231 s----------~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~  297 (768)
T 3rgz_A          231 S----------GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLT  297 (768)
T ss_dssp             C----------SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCS
T ss_pred             c----------CCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--c-ccCCCCEEECcCCccCCccCHHHHhhcCcCC
Confidence            9          7778888999999999999999999999987776  2 89999999999999998888888775 9999


Q ss_pred             eEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCC-CCCEEEcc
Q 042537          314 IILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDP-FSSSIDIS  392 (789)
Q Consensus       314 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~-~L~~L~l~  392 (789)
                      +|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.......++|+.|++++|.+++.+|. .+..++ .|+.|+++
T Consensus       298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls  376 (768)
T 3rgz_A          298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLS  376 (768)
T ss_dssp             EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEECC
T ss_pred             EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-HHHhhhcCCcEEEcc
Confidence            9999999999999999999999999999999999888877445567999999999999998988 566665 89999999


Q ss_pred             CCcccccCCCC-----CCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCc
Q 042537          393 SNYFEGLIPPL-----PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFS  467 (789)
Q Consensus       393 ~n~l~~~~~~~-----~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  467 (789)
                      +|.+++.+|..     .++|+.|++++|++++.++..... +++|++|++++|.+++.+|..|.++++|+.|++++|+++
T Consensus       377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~  455 (768)
T 3rgz_A          377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE  455 (768)
T ss_dssp             SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence            99999887765     467999999999999876654433 389999999999999999999999999999999999999


Q ss_pred             ccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCc
Q 042537          468 GKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQV  547 (789)
Q Consensus       468 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~  547 (789)
                      +.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.++. .+++|++|++++|++++.+|..+
T Consensus       456 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l  534 (768)
T 3rgz_A          456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAEL  534 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGG
T ss_pred             CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999987 79999999999999999999999


Q ss_pred             cCCCcCceEeccCCcccccCCccccccccCcccCCCcc-cc--ccC----------------ccccccccccccc--ccc
Q 042537          548 CQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNL-AI--TSN----------------YTFERQGIEFLES--YVD  606 (789)
Q Consensus       548 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~-~~--~~~----------------~~~~~~~~~~~~~--~~~  606 (789)
                      ..+++|+.|++++|++++.+|..+.....+........ ..  ...                .......+..+..  ...
T Consensus       535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (768)
T 3rgz_A          535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN  614 (768)
T ss_dssp             GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred             cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence            99999999999999999999998877666544322110 00  000                0000000000000  000


Q ss_pred             eeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccc
Q 042537          607 NVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVG  686 (789)
Q Consensus       607 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  686 (789)
                      .......|..+.....++.|+.||+++|+++|.+|..|+++++|+.|+|++|+++|.+|..++++++|++|||++|+++|
T Consensus       615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence            00122344455556778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCC
Q 042537          687 GIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKCPDEDS  746 (789)
Q Consensus       687 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~l~~~c~~~~~  746 (789)
                      .+|..+..+++|++||+++|+++|.||.++++.+|...+|.|||++||.|+. .|..+..
T Consensus       695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~  753 (768)
T 3rgz_A          695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA  753 (768)
T ss_dssp             CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred             cCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence            9999999999999999999999999999999999999999999999999987 8976543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.4e-68  Score=625.64  Aligned_cols=593  Identities=29%  Similarity=0.379  Sum_probs=464.3

Q ss_pred             cEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcc--cccCCCCCCEEecCCCcCCCCCCccc-cCCC
Q 042537           48 HVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPE--FIGSLNKLRYLSLSSAEFEGPIPSQL-GNLS  124 (789)
Q Consensus        48 ~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~p~~~-~~l~  124 (789)
                      +++.++++.    +.+ ..+|+.|+++++|++|+|++|.+++. +|.  .++++++|++|+|++|.+.+..|..+ .+++
T Consensus        78 ~L~~l~~~~----~~~-~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  151 (768)
T 3rgz_A           78 GLESLFLSN----SHI-NGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN  151 (768)
T ss_dssp             TCCEEECTT----SCE-EECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred             cccccCCcC----CCc-CCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence            345555555    333 23558899999999999999999875 777  89999999999999999998888776 8999


Q ss_pred             CCcEEeccCccCCCCcchHHh---hCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhh
Q 042537          125 RLKYLDLSYINLNKSRDWLRI---IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNI  201 (789)
Q Consensus       125 ~L~~L~Ls~n~l~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~  201 (789)
                      +|++|++++|++++.  .|..   +.++++|++|++++|.+.+..+  .  ..+  ++|++|++++|.+++.+|. +..+
T Consensus       152 ~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~--~~l--~~L~~L~Ls~n~l~~~~~~-l~~l  222 (768)
T 3rgz_A          152 SLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD--V--SRC--VNLEFLDVSSNNFSTGIPF-LGDC  222 (768)
T ss_dssp             TCSEEECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCB--C--TTC--TTCCEEECCSSCCCSCCCB-CTTC
T ss_pred             CCCEEECCCCccCCc--CChhhhhhccCCCCCEEECCCCcccccCC--c--ccC--CcCCEEECcCCcCCCCCcc-cccC
Confidence            999999999999875  3444   8999999999999999987766  3  445  9999999999999987776 5444


Q ss_pred             cCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCC------------ccEEecCCCcCcccchhhhhCC-CCCCEEEc
Q 042537          202 SSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE------------LEELFLGKNRLNGTINQWLSRM-YKLDALSL  268 (789)
Q Consensus       202 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~------------L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L  268 (789)
                       ++|++|++++|.+++..|..|.++++|++|++++|+            |++|++++|.+++.+|..+... ++|++|++
T Consensus       223 -~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L  301 (768)
T 3rgz_A          223 -SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL  301 (768)
T ss_dssp             -CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred             -CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence             499999999999999999999999999999999875            5567777777777777766654 77777777


Q ss_pred             cCCCCCCccChhhhhcCCCCcEEEccCCcccccccCC-CCCcccceeEeccCccCCCCCchhccCCC-CccEEEccCCcC
Q 042537          269 SGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHD-WIPPFQLIIILLGSCQMGPHFPKWLQTQN-QIEVLDISDAGI  346 (789)
Q Consensus       269 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~ls~n~i  346 (789)
                      ++|.+++.+|. .|.++++|++|++++|++.+..+.. +..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+
T Consensus       302 s~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l  380 (768)
T 3rgz_A          302 SGNHFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF  380 (768)
T ss_dssp             CSSEEEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred             cCCcCCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCc
Confidence            77777766665 5777777777777777777555544 66777777777777777777777777766 777777777777


Q ss_pred             CCCcchhHhhh-ccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCC---CCCCcEEEcCCCcCccccc
Q 042537          347 SDTVPDWFWDL-SHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPL---PSNASVLNLSRNKFSESIS  422 (789)
Q Consensus       347 ~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~i~~~~~  422 (789)
                      ++..|..+... .++|+.|++++|.+++.+|. .+..++.|+.|++++|.+++.+|..   +++|+.|++++|++.+.++
T Consensus       381 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  459 (768)
T 3rgz_A          381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP  459 (768)
T ss_dssp             EEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             CCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence            76666655431 34677777777777777776 6677777777777777777766653   5677777777777776655


Q ss_pred             hhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCC
Q 042537          423 FLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCS  502 (789)
Q Consensus       423 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  502 (789)
                      ..... +++|++|++++|++++.+|..+.++++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..++
T Consensus       460 ~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  538 (768)
T 3rgz_A          460 QELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR  538 (768)
T ss_dssp             GGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred             HHHcC-CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence            43322 26777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCcEEeCCCCcccccCchhhhhcCCCCc----------------------------------------------EEEcCC
Q 042537          503 QLILMDLGKNGLSGEIPTWIGEGLPKLV----------------------------------------------VLSLKS  536 (789)
Q Consensus       503 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~----------------------------------------------~L~L~~  536 (789)
                      +|+.|++++|+++|.+|..++. ...+.                                              .++++.
T Consensus       539 ~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  617 (768)
T 3rgz_A          539 SLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS  617 (768)
T ss_dssp             TCCEEECCSSEEESBCCGGGGT-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred             CCCEEECCCCccCCcCChHHhc-ccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            7777777777777777776652 22222                                              223344


Q ss_pred             CcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccc
Q 042537          537 NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQ  616 (789)
Q Consensus       537 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (789)
                      |.+.|.+|..+..+++|+.||+++|+++|.+|..+++++.|                                       
T Consensus       618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L---------------------------------------  658 (768)
T 3rgz_A          618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL---------------------------------------  658 (768)
T ss_dssp             CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC---------------------------------------
T ss_pred             ceecccCchhhhccccccEEECcCCcccccCCHHHhccccC---------------------------------------
Confidence            66666677777778888888888888888888887777666                                       


Q ss_pred             cccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC
Q 042537          617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS  696 (789)
Q Consensus       617 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  696 (789)
                                +.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..++.+++|++||+++|+++|.+|.. ..+.
T Consensus       659 ----------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~  727 (768)
T 3rgz_A          659 ----------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE  727 (768)
T ss_dssp             ----------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGG
T ss_pred             ----------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhc
Confidence                      89999999999999999999999999999999999999999999999999999999999999975 3344


Q ss_pred             CCCeEeccCCc-ccc
Q 042537          697 RLSVMNLSYNN-LSG  710 (789)
Q Consensus       697 ~L~~L~ls~N~-l~~  710 (789)
                      .+....+.+|+ ++|
T Consensus       728 ~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          728 TFPPAKFLNNPGLCG  742 (768)
T ss_dssp             GSCGGGGCSCTEEES
T ss_pred             cCCHHHhcCCchhcC
Confidence            55666777886 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.9e-59  Score=546.09  Aligned_cols=587  Identities=21%  Similarity=0.208  Sum_probs=400.0

Q ss_pred             CcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCC
Q 042537           47 GHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRL  126 (789)
Q Consensus        47 ~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L  126 (789)
                      .++++|+|++    +.+.+..+..|.++++|++|++++|.+++. .|..|+++++|++|+|++|.+++..+.+|+++++|
T Consensus        25 ~~l~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTH----NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCS----SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEECCC----CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence            4566666666    555554445566666666666666666654 55666666666666666666665444456666666


Q ss_pred             cEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhh-cCCC
Q 042537          127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNI-SSKL  205 (789)
Q Consensus       127 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~L  205 (789)
                      ++|++++|++++++  |..|+++++|++|++++|.+.+..+.  .+.++  ++|++|++++|.+++..+..+... .++|
T Consensus       100 ~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  173 (680)
T 1ziw_A          100 TELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTKLG--TQVQL--ENLQELLLSNNKIQALKSEELDIFANSSL  173 (680)
T ss_dssp             SEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCCCC--SSSCC--TTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred             CEEECCCCccCccC--hhHccccCCCCEEECCCCcccccCch--hhccc--ccCCEEEccCCcccccCHHHhhccccccc
Confidence            66666666666542  24566666666666666666655552  22333  666666666666654444333211 1356


Q ss_pred             cEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhh---hCCCCCCEEEccCCCCCCccChhhh
Q 042537          206 VVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL---SRMYKLDALSLSGNSLTGVVTESVF  282 (789)
Q Consensus       206 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~  282 (789)
                      ++|++++|.+++..+..|..+++|+.|+++++          .+.......+   ...++|++|++++|.+.+..+. .|
T Consensus       174 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~----------~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~  242 (680)
T 1ziw_A          174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV----------QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TF  242 (680)
T ss_dssp             SEEECTTCCCCCBCTTGGGGSSEECEEECTTC----------CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TT
T ss_pred             cEEECCCCcccccChhhhhhhhhhhhhhcccc----------ccChhhHHHHHHHhhhccccEEEccCCcccccChh-Hh
Confidence            66666666666666666666666666666533          2222111111   1235666666666666643333 45


Q ss_pred             hcCCC--CcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccC
Q 042537          283 SELSN--LKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHT  360 (789)
Q Consensus       283 ~~l~~--L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~  360 (789)
                      ..++.  |++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+..+.        
T Consensus       243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--------  314 (680)
T 1ziw_A          243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL--------  314 (680)
T ss_dssp             GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------------
T ss_pred             hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc--------
Confidence            55533  66666666666655555555566666666666666555555566666666666655433321110        


Q ss_pred             CCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCC---CCCCcEEEcCCCcCcccc-chhcc--cCCCCCCE
Q 042537          361 IADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPL---PSNASVLNLSRNKFSESI-SFLCS--INGHKLEF  434 (789)
Q Consensus       361 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~i~~~~-~~~~~--~~~~~L~~  434 (789)
                              ..+. .++...+..+++|++|++++|.+++..+..   +++|+.|++++|.+.... +...+  ...++|+.
T Consensus       315 --------~~lp-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~  385 (680)
T 1ziw_A          315 --------ASLP-KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI  385 (680)
T ss_dssp             ----------CC-EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred             --------cccc-ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence                    0000 111224555666777777777776665543   456777777777643221 11111  11258999


Q ss_pred             EEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCC-ccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCc
Q 042537          435 LDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIP-KSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNG  513 (789)
Q Consensus       435 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~  513 (789)
                      |++++|++++..|.+|..+++|+.|++++|.+.+.+| ..|..+++|++|++++|++.+..+..|..+++|+.|++++|.
T Consensus       386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  465 (680)
T 1ziw_A          386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA  465 (680)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence            9999999999999999999999999999999987665 688999999999999999999999999999999999999999


Q ss_pred             cc--ccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCc
Q 042537          514 LS--GEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNY  591 (789)
Q Consensus       514 l~--~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~  591 (789)
                      +.  +.+|..+. .+++|+.|++++|++++..+..+.++++|++|++++|++++..+..+..-                 
T Consensus       466 l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-----------------  527 (680)
T 1ziw_A          466 LKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG-----------------  527 (680)
T ss_dssp             CBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS-----------------
T ss_pred             ccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC-----------------
Confidence            86  46677666 79999999999999998888889999999999999999986533222100                 


Q ss_pred             ccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccC
Q 042537          592 TFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQL  671 (789)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  671 (789)
                                              .......++.|+.|++++|+++...+..|.++++|++|+|++|++++..+..|..+
T Consensus       528 ------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l  583 (680)
T 1ziw_A          528 ------------------------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ  583 (680)
T ss_dssp             ------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ------------------------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence                                    00112345567999999999995555679999999999999999997777778999


Q ss_pred             CCCCEEeCCCCcccccCchhhh-cCCCCCeEeccCCcccccCCC
Q 042537          672 KSLDFLDLSQNQFVGGIPSSLC-QLSRLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       672 ~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p~  714 (789)
                      ++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.++.
T Consensus       584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            9999999999999999988887 789999999999999999885

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2e-58  Score=537.37  Aligned_cols=587  Identities=20%  Similarity=0.177  Sum_probs=455.3

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHh
Q 042537           66 TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRI  145 (789)
Q Consensus        66 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  145 (789)
                      .+|..+.  +++++|++++|.+++. .+..|+++++|++|++++|.+++..|.+|+++++|++|+|++|+++.++.  ..
T Consensus        18 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~   92 (680)
T 1ziw_A           18 QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD--KT   92 (680)
T ss_dssp             SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT--TT
T ss_pred             ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh--hh
Confidence            5666554  7999999999999975 66789999999999999999999999999999999999999999998532  57


Q ss_pred             hCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhh-
Q 042537          146 IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFD-  224 (789)
Q Consensus       146 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~-  224 (789)
                      |+++++|++|++++|.+.+..+  ..+.++  ++|++|++++|.+++..+..+..+. +|++|++++|.+++..+..+. 
T Consensus        93 ~~~l~~L~~L~L~~n~l~~~~~--~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~  167 (680)
T 1ziw_A           93 FAFCTNLTELHLMSNSIQKIKN--NPFVKQ--KNLITLDLSHNGLSSTKLGTQVQLE-NLQELLLSNNKIQALKSEELDI  167 (680)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCS--CTTTTC--TTCCEEECCSSCCSCCCCCSSSCCT-TCCEEECCSSCCCCBCHHHHGG
T ss_pred             hccCCCCCEEECCCCccCccCh--hHcccc--CCCCEEECCCCcccccCchhhcccc-cCCEEEccCCcccccCHHHhhc
Confidence            9999999999999999988776  344555  8999999999998876666555544 899999999999888777665 


Q ss_pred             -cCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhh--hhcCCCCcEEEccCCccccc
Q 042537          225 -RMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESV--FSELSNLKALHLDDNSFTLK  301 (789)
Q Consensus       225 -~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~L~~n~i~~~  301 (789)
                       .+++|+.|+++          +|.+++..|..|..+++|+.|+++++.+.+......  ....++|++|++++|.+.+.
T Consensus       168 ~~~~~L~~L~L~----------~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~  237 (680)
T 1ziw_A          168 FANSSLKKLELS----------SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT  237 (680)
T ss_dssp             GTTCEESEEECT----------TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred             cccccccEEECC----------CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence             45777777777          666667778888888899999998888763222111  11347888888888888877


Q ss_pred             ccCCCCCccc--ceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCC
Q 042537          302 FSHDWIPPFQ--LIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLS  379 (789)
Q Consensus       302 ~~~~~~~~~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  379 (789)
                      .+..+..+..  |+.|++++|.+.+..|.++..+++|++|++++|.+.+..+..+..+ ++|+.|++++|...+.++.. 
T Consensus       238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~-  315 (680)
T 1ziw_A          238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL-FNVRYLNLKRSFTKQSISLA-  315 (680)
T ss_dssp             CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC-TTCCEEECTTCBCCC------
T ss_pred             ChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCC-CCccEEeccchhhhcccccc-
Confidence            7777766644  7777777777776667777777777777777777776666555442 35666666655444322210 


Q ss_pred             CCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCcccc--CCCcccccC--CC
Q 042537          380 LRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSG--RLPDCWMQF--DR  455 (789)
Q Consensus       380 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l--~~  455 (789)
                        ..+   .       +.......+++|+.|++++|++.+..+..+. .+++|++|++++|.+..  .....|..+  ++
T Consensus       316 --~lp---~-------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~  382 (680)
T 1ziw_A          316 --SLP---K-------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSP  382 (680)
T ss_dssp             ---CC---E-------ECTTTTTTCTTCCEEECCSCCBCCCCTTTTT-TCTTCCEEECTTCBSCCCEECTTTTGGGTTSC
T ss_pred             --ccc---c-------cChhhcccCCCCCEEECCCCccCCCChhHhc-cccCCcEEECCCCchhhhhcchhhhcccccCc
Confidence              000   0       0000112367899999999999886654333 33889999999987542  233344443  58


Q ss_pred             CcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCC-cCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEc
Q 042537          456 LAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELP-SFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSL  534 (789)
Q Consensus       456 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L  534 (789)
                      |+.|++++|++++..|..|..+++|++|++++|.+.+.+| ..|.++++|++|++++|++.+..+.. +..+++|+.|++
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~~L~l  461 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSLQRLML  461 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTT-TTTCTTCCEEEC
T ss_pred             CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhh-hhcCcccccchh
Confidence            9999999999998888899999999999999999987665 67889999999999999988444444 447899999999


Q ss_pred             CCCccc--ccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEe
Q 042537          535 KSNKFH--GNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTW  612 (789)
Q Consensus       535 ~~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  612 (789)
                      ++|.+.  +..|..+..+++|++|++++|++++..+..|..+++|                                   
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-----------------------------------  506 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-----------------------------------  506 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------------------------------
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-----------------------------------
Confidence            999886  4678888999999999999999998777777766666                                   


Q ss_pred             eccccccccccCceeEEEcccCccccccc--------hhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcc
Q 042537          613 KGSQHEYRSTLGLVKILDFSMNKLSGTIP--------EEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQF  684 (789)
Q Consensus       613 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  684 (789)
                                    +.|++++|++++..+        ..|.++++|++|+|++|+++...+..|.++++|+.|+|++|++
T Consensus       507 --------------~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  572 (680)
T 1ziw_A          507 --------------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL  572 (680)
T ss_dssp             --------------CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC
Confidence                          899999999986422        2378999999999999999955555799999999999999999


Q ss_pred             cccCchhhhcCCCCCeEeccCCcccccCCCCC--ccccccccccCCCCCCCCCCC
Q 042537          685 VGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGT--QLQSFNASVYAGNPELCGLPL  737 (789)
Q Consensus       685 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~l  737 (789)
                      ++..+..|..+++|++|++++|++++..|..-  .+..+....+.||||.|+|+.
T Consensus       573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            98888889999999999999999998766421  456677788999999999974

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.2e-55  Score=503.63  Aligned_cols=531  Identities=22%  Similarity=0.209  Sum_probs=403.3

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHh
Q 042537           66 TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRI  145 (789)
Q Consensus        66 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  145 (789)
                      .+|..+..  ++++|++++|.+++. .|..|+++++|++|+|++|.+.+..|.+|+++++|++|+|++|+++++  .|..
T Consensus        26 ~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~  100 (606)
T 3t6q_A           26 EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM--AETA  100 (606)
T ss_dssp             SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE--CTTT
T ss_pred             cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc--Chhh
Confidence            45555543  789999999999865 678899999999999999999988899999999999999999999875  4678


Q ss_pred             hCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhc
Q 042537          146 IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDR  225 (789)
Q Consensus       146 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  225 (789)
                      |+++++|++|++++|.+++..+  ..+.++  ++|++|++++|.+.+...+.++. .++|++|++++|.+++..+..|+.
T Consensus       101 ~~~l~~L~~L~L~~n~i~~l~~--~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~  175 (606)
T 3t6q_A          101 LSGPKALKHLFFIQTGISSIDF--IPLHNQ--KTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSS  175 (606)
T ss_dssp             TSSCTTCCEEECTTSCCSCGGG--SCCTTC--TTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHT
T ss_pred             hcccccccEeeccccCcccCCc--chhccC--CcccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhh
Confidence            9999999999999999988766  334555  88888888888887643344444 448889999998888888888888


Q ss_pred             CCCCc--EEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCccccccc
Q 042537          226 MVSLR--TLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFS  303 (789)
Q Consensus       226 l~~L~--~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  303 (789)
                      +++|+  .|+++          +|.+.+..|..|.. .+|++|++++|..   ++. .+..+.+++...+....+.....
T Consensus       176 l~~L~~l~L~l~----------~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~~~~  240 (606)
T 3t6q_A          176 LQQATNLSLNLN----------GNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFEDMDD  240 (606)
T ss_dssp             TTTCCSEEEECT----------TCCCCEECTTTTTT-CEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTTSCC
T ss_pred             hcccceeEEecC----------CCccCccChhHhhh-ccccccccCCchh---HHH-Hhhhccccchhheechhhccccc
Confidence            88888  67777          55555555665544 5788888888862   222 46666665554444332221111


Q ss_pred             CCCCCcccceeEeccCccCCCCCchhccCCC--CccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCC
Q 042537          304 HDWIPPFQLIIILLGSCQMGPHFPKWLQTQN--QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLR  381 (789)
Q Consensus       304 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  381 (789)
                      .                   ...+..+..+.  +|+.+++++|.+++..+..|.. .++|+.|++++|.++ .+|. .+.
T Consensus       241 ~-------------------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~-~lp~-~l~  298 (606)
T 3t6q_A          241 E-------------------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC-FSGLQELDLTATHLS-ELPS-GLV  298 (606)
T ss_dssp             C-------------------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT-CTTCSEEECTTSCCS-CCCS-SCC
T ss_pred             c-------------------ccChhHhchhhcCceeEEEeecCccCccCHHHhcc-ccCCCEEeccCCccC-CCCh-hhc
Confidence            0                   01122222222  5666666666665544443333 234555555555554 3443 334


Q ss_pred             CCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCc-ccccCCCCcEEE
Q 042537          382 FDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPD-CWMQFDRLAVLS  460 (789)
Q Consensus       382 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~  460 (789)
                      .++.|++|++                     ++|++.+..+.... .+++|++|++++|.+.+.++. .+..+++|++|+
T Consensus       299 ~l~~L~~L~l---------------------~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          299 GLSTLKKLVL---------------------SANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             SCTTCCEEEC---------------------TTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             ccccCCEEEC---------------------ccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            4444444444                     44444443332211 227899999999988866554 588999999999


Q ss_pred             cCCCcCcccC--CccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCc
Q 042537          461 LANNFFSGKI--PKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNK  538 (789)
Q Consensus       461 L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~  538 (789)
                      +++|.+++..  +..+..+++|++|++++|++.+..|..|..+++|++|++++|++.+..+...+..+++|++|++++|.
T Consensus       357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  436 (606)
T 3t6q_A          357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL  436 (606)
T ss_dssp             CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred             CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence            9999998766  77889999999999999999999999999999999999999999877666655579999999999999


Q ss_pred             ccccCCCCccCCCcCceEeccCCcccccC---CccccccccCcccCCCccccccCcccccccccccccccceeEEEeecc
Q 042537          539 FHGNIPFQVCQLSYIQILDLSLNNISGII---PKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGS  615 (789)
Q Consensus       539 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  615 (789)
                      +.+..|..+..+++|++|++++|++++..   +..+..+                                         
T Consensus       437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-----------------------------------------  475 (606)
T 3t6q_A          437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-----------------------------------------  475 (606)
T ss_dssp             CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC-----------------------------------------
T ss_pred             cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC-----------------------------------------
Confidence            99888989999999999999999998632   2334444                                         


Q ss_pred             ccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcC
Q 042537          616 QHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL  695 (789)
Q Consensus       616 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  695 (789)
                              +.|+.|++++|++++..|..|..+++|++|+|++|++++.+|..+.++++| .|++++|++++.+|..+..+
T Consensus       476 --------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l  546 (606)
T 3t6q_A          476 --------GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL  546 (606)
T ss_dssp             --------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred             --------CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccC
Confidence                    445999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             CCCCeEeccCCcccccCCCC
Q 042537          696 SRLSVMNLSYNNLSGKIPLG  715 (789)
Q Consensus       696 ~~L~~L~ls~N~l~~~~p~~  715 (789)
                      ++|++|++++|++.|.++..
T Consensus       547 ~~L~~L~l~~N~~~c~c~~~  566 (606)
T 3t6q_A          547 SQQRTINLRQNPLDCTCSNI  566 (606)
T ss_dssp             HTSSEEECTTCCEECSGGGH
T ss_pred             CCCCEEeCCCCCccccCCcH
Confidence            99999999999999988853

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6.7e-54  Score=492.61  Aligned_cols=530  Identities=21%  Similarity=0.179  Sum_probs=403.4

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHh
Q 042537           66 TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRI  145 (789)
Q Consensus        66 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  145 (789)
                      .+|..+.  +++++|++++|.+++. .+..|+++++|++|++++|.+++..|.+|.++++|++|+|++|+++++  .|..
T Consensus        25 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~   99 (606)
T 3vq2_A           25 KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF--SPGS   99 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC--CTTS
T ss_pred             cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc--Chhh
Confidence            5565554  7899999999999865 566889999999999999999988888999999999999999999885  4688


Q ss_pred             hCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCC-CchhHHHhhcCCCcEEEccCCCCcccCchhhh
Q 042537          146 IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS-SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFD  224 (789)
Q Consensus       146 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~  224 (789)
                      |+++++|++|++++|.+.+..+  ..+.++  ++|++|++++|.+.+ .+|..+.++. +|++|++++|.+++..+..|+
T Consensus       100 ~~~l~~L~~L~L~~n~l~~~~~--~~~~~l--~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~  174 (606)
T 3vq2_A          100 FSGLTSLENLVAVETKLASLES--FPIGQL--ITLKKLNVAHNFIHSCKLPAYFSNLT-NLVHVDLSYNYIQTITVNDLQ  174 (606)
T ss_dssp             STTCTTCCEEECTTSCCCCSSS--SCCTTC--TTCCEEECCSSCCCCCCCCGGGGTCT-TCCEEECCSSCCCEECTTTTH
T ss_pred             cCCcccCCEEEccCCccccccc--cccCCC--CCCCEEeCCCCcccceechHhHhhcC-CCCEEEccCCcceecChhhhh
Confidence            9999999999999999988776  345556  899999999999876 5677776665 899999999999988888777


Q ss_pred             cCCCCc----EEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccc
Q 042537          225 RMVSLR----TLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTL  300 (789)
Q Consensus       225 ~l~~L~----~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~  300 (789)
                      .+++|+    .|+++          +|.+++..+..+... +|++|++++|.+.+......+.++++|+.+++..+.+..
T Consensus       175 ~l~~L~~~l~~L~l~----------~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  243 (606)
T 3vq2_A          175 FLRENPQVNLSLDMS----------LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD  243 (606)
T ss_dssp             HHHHCTTCCCEEECT----------TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             hhhccccccceeecc----------CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence            776655    67777          455554455555554 899999999988755555578889999988887655442


Q ss_pred             cccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEc-cCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCC
Q 042537          301 KFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDI-SDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLS  379 (789)
Q Consensus       301 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l-s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~  379 (789)
                      ......               +....+..+..+ .++.+++ ..+.+.+..|. + ...++|+.|++++|.+. .+|  .
T Consensus       244 ~~~l~~---------------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~-~~l~~L~~L~l~~~~~~-~l~--~  302 (606)
T 3vq2_A          244 ERNLEI---------------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-F-HCLANVSAMSLAGVSIK-YLE--D  302 (606)
T ss_dssp             SCCCSC---------------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-C-GGGTTCSEEEEESCCCC-CCC--C
T ss_pred             CCcccc---------------cChHHhhhhhhc-cHhheeccccccccccccc-c-ccCCCCCEEEecCccch-hhh--h
Confidence            211100               000011111111 3444555 44445544444 2 22345555555555553 233  2


Q ss_pred             CCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEE
Q 042537          380 LRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVL  459 (789)
Q Consensus       380 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  459 (789)
                      +..++                     +|+.|++++|++.. ++..   .+++|++|++++|...+..  .+..+++|++|
T Consensus       303 l~~~~---------------------~L~~L~l~~n~l~~-lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L  355 (606)
T 3vq2_A          303 VPKHF---------------------KWQSLSIIRCQLKQ-FPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYL  355 (606)
T ss_dssp             CCTTC---------------------CCSEEEEESCCCSS-CCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred             ccccc---------------------cCCEEEcccccCcc-cccC---CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence            33333                     44444444444422 2221   2278888888888654433  56788999999


Q ss_pred             EcCCCcCccc--CCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCC
Q 042537          460 SLANNFFSGK--IPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN  537 (789)
Q Consensus       460 ~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n  537 (789)
                      ++++|++++.  .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..|...+..+++|++|++++|
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            9999998866  37788889999999999999885 45788999999999999999996666344447999999999999


Q ss_pred             cccccCCCCccCCCcCceEeccCCcccc-cCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccc
Q 042537          538 KFHGNIPFQVCQLSYIQILDLSLNNISG-IIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQ  616 (789)
Q Consensus       538 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (789)
                      ++.+..|..+..+++|++|++++|++++ ..|..+..+++|                                       
T Consensus       435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L---------------------------------------  475 (606)
T 3vq2_A          435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL---------------------------------------  475 (606)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------------------------
T ss_pred             CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC---------------------------------------
Confidence            9998889999999999999999999987 467777666655                                       


Q ss_pred             cccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC
Q 042537          617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS  696 (789)
Q Consensus       617 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  696 (789)
                                +.|++++|++++..|..|..+++|++|+|++|++++.+|..+..+++|+.|||++|+++ .+|..+..++
T Consensus       476 ----------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~  544 (606)
T 3vq2_A          476 ----------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP  544 (606)
T ss_dssp             ----------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred             ----------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence                      89999999999999999999999999999999999988999999999999999999999 6777799997


Q ss_pred             -CCCeEeccCCcccccCCCC
Q 042537          697 -RLSVMNLSYNNLSGKIPLG  715 (789)
Q Consensus       697 -~L~~L~ls~N~l~~~~p~~  715 (789)
                       +|++|++++|++.|.++..
T Consensus       545 ~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          545 KSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             TTCCEEECCSCCCCCSSTTH
T ss_pred             ccCcEEEccCCCcccCCccH
Confidence             5999999999999988864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.8e-53  Score=489.00  Aligned_cols=534  Identities=19%  Similarity=0.167  Sum_probs=382.7

Q ss_pred             EEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcC
Q 042537           79 HLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLE  158 (789)
Q Consensus        79 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~  158 (789)
                      .++.++..++  .+|..+.  +++++|++++|.+++..|.+|+++++|++|+|++|+++++  .|..|+++++|++|+++
T Consensus        16 ~~~c~~~~l~--~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls   89 (606)
T 3t6q_A           16 TYNCENLGLN--EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI--HEDTFQSQHRLDTLVLT   89 (606)
T ss_dssp             EEECTTSCCS--SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE--CTTTTTTCTTCCEEECT
T ss_pred             eEECCCCCcc--cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCcccee--ChhhccCccccCeeeCC
Confidence            5666677777  4677665  4799999999999988899999999999999999999885  46889999999999999


Q ss_pred             CCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCC
Q 042537          159 HCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNE  238 (789)
Q Consensus       159 ~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  238 (789)
                      +|.+.+..|.  .+.++  ++|++|++++|.+++..+..+..+ ++|++|++++|.+.+.....+..             
T Consensus        90 ~n~l~~~~~~--~~~~l--~~L~~L~L~~n~i~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~-------------  151 (606)
T 3t6q_A           90 ANPLIFMAET--ALSGP--KALKHLFFIQTGISSIDFIPLHNQ-KTLESLYLGSNHISSIKLPKGFP-------------  151 (606)
T ss_dssp             TCCCSEECTT--TTSSC--TTCCEEECTTSCCSCGGGSCCTTC-TTCCEEECCSSCCCCCCCCTTCC-------------
T ss_pred             CCcccccChh--hhccc--ccccEeeccccCcccCCcchhccC-CcccEEECCCCcccccCcccccC-------------
Confidence            9999877663  33333  555555555555543222222222 24555555555444433223333             


Q ss_pred             ccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCc--EEEccCCcccccccCCCCCcccceeEe
Q 042537          239 LEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLK--ALHLDDNSFTLKFSHDWIPPFQLIIIL  316 (789)
Q Consensus       239 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~~~~L~~L~  316 (789)
                                           +++|++|++++|.++ .++...|..+++|+  +|++++|.+.+..+..+. ...|+.++
T Consensus       152 ---------------------l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~  208 (606)
T 3t6q_A          152 ---------------------TEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLN  208 (606)
T ss_dssp             ---------------------CTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEE
T ss_pred             ---------------------CcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccc
Confidence                                 445555555555554 23233444555554  445555554443333322 23455555


Q ss_pred             ccCccCCCCCchhccCCCCccEEEccCCcCC-----CCcchhHhhhc-cCCCeeeeccccccccCCCCCCCCCCCCCEEE
Q 042537          317 LGSCQMGPHFPKWLQTQNQIEVLDISDAGIS-----DTVPDWFWDLS-HTIADFNLSNNHIKGKLPNLSLRFDPFSSSID  390 (789)
Q Consensus       317 l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~-----~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~  390 (789)
                      +++|.   ..+..+..+..++...+....+.     ...+..+.... .+++.|++++|.+++..+. .+..+++|++|+
T Consensus       209 l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~  284 (606)
T 3t6q_A          209 FGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN-TFHCFSGLQELD  284 (606)
T ss_dssp             CTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT-TTTTCTTCSEEE
T ss_pred             cCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH-HhccccCCCEEe
Confidence            55543   33444444444443333322221     11122222211 1466666666666533222 455555555555


Q ss_pred             ccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccC
Q 042537          391 ISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKI  470 (789)
Q Consensus       391 l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  470 (789)
                      +++|.+                     +..+....  .+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.+
T Consensus       285 l~~n~l---------------------~~lp~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  341 (606)
T 3t6q_A          285 LTATHL---------------------SELPSGLV--GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL  341 (606)
T ss_dssp             CTTSCC---------------------SCCCSSCC--SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred             ccCCcc---------------------CCCChhhc--ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence            555544                     43332221  2288999999999999888889999999999999999998655


Q ss_pred             Cc-cccccCcccEEEccCCeeeeeC--CcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCC-C
Q 042537          471 PK-SMGFLHSIQTLSLYNNSLIGEL--PSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPF-Q  546 (789)
Q Consensus       471 ~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~  546 (789)
                      |. .+..+++|++|++++|.+.+..  +..+..+++|++|++++|++.+..|..+. .+++|++|++++|++.+..+. .
T Consensus       342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~  420 (606)
T 3t6q_A          342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSP  420 (606)
T ss_dssp             CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCT
T ss_pred             chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchh
Confidence            54 5889999999999999998776  78899999999999999999966666555 799999999999999977655 4


Q ss_pred             ccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCce
Q 042537          547 VCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLV  626 (789)
Q Consensus       547 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  626 (789)
                      +..+++|++|++++|.+++..|..+..+++|                                                 
T Consensus       421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------------------------  451 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-------------------------------------------------  451 (606)
T ss_dssp             TTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-------------------------------------------------
T ss_pred             hhCcccCCEEECCCCccCCcCHHHHhCCCCC-------------------------------------------------
Confidence            8899999999999999998888877776666                                                 


Q ss_pred             eEEEcccCccccc---cchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEec
Q 042537          627 KILDFSMNKLSGT---IPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNL  703 (789)
Q Consensus       627 ~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  703 (789)
                      +.|++++|++++.   .+..+..+++|++|++++|++++.+|..|..+++|+.|+|++|++++..|..+..++.| +|++
T Consensus       452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L  530 (606)
T 3t6q_A          452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL  530 (606)
T ss_dssp             CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred             CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence            8999999999873   33679999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             cCCcccccCCCC-CccccccccccCCCCCCCCCCC
Q 042537          704 SYNNLSGKIPLG-TQLQSFNASVYAGNPELCGLPL  737 (789)
Q Consensus       704 s~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~l  737 (789)
                      ++|++++..|.. ..+..+....+.|||+.|+|+.
T Consensus       531 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             cCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999877753 3456677778999999998863

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-53  Score=506.69  Aligned_cols=562  Identities=21%  Similarity=0.224  Sum_probs=349.1

Q ss_pred             CceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCC
Q 042537           35 CYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEG  114 (789)
Q Consensus        35 c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~  114 (789)
                      |.|.+|++  ...++++|||++    +.+.+..+.+|.++++|++|++++|...+...|..|.++++|++|+|++|.+.+
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~----N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSF----NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF   87 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEES----CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred             CCCCCCCC--CCCCcCEEECCC----CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence            44555544  334555566655    455555555555666666666655543322124555555666666666665555


Q ss_pred             CCCccccCCCCCcEEeccCccCCCCcchHH--hhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCC
Q 042537          115 PIPSQLGNLSRLKYLDLSYINLNKSRDWLR--IIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS  192 (789)
Q Consensus       115 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~  192 (789)
                      ..|.+|+++++|++|+|++|.+++.  .|.  .++++++|++|++++|.+.+..+. ..+.++  ++|++|++++|.+++
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~L--~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFCGLSDA--VLKDGYFRNLKALTRLDLSKNQIRSLYLH-PSFGKL--NSLKSIDFSSNQIFL  162 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTCCCSSC--CSTTCCCSSCSSCCEEEEESCCCCCCCCC-GGGGTC--SSCCEEEEESSCCCC
T ss_pred             cCHhHccCCcccCEeeCcCCCCCcc--cccCccccccCCCCEEECCCCcccccccc-hhHhhC--CCCCEEECCCCcCCe
Confidence            5555555566666666665555542  112  255555555555555555543321 122333  555555555555544


Q ss_pred             CchhHHHhhc-CCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCC
Q 042537          193 SIYPWLFNIS-SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGN  271 (789)
Q Consensus       193 ~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  271 (789)
                      ..+..+..+. ++|+.|++++|.+.+..+..+..+++                           .+.+ .+|++|++++|
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~---------------------------~~~~-~~L~~L~Ls~n  214 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN---------------------------PFRN-MVLEILDVSGN  214 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC---------------------------TTTT-CCBSEEBCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCC---------------------------cccc-CceeEEecCCC
Confidence            4444433321 24555555555554444443333322                           0000 02455555555


Q ss_pred             CCCCccChhhhhc--CCCCcEEEccC---------CcccccccCCCCCc--ccceeEeccCccCCCCCchhccCCCCccE
Q 042537          272 SLTGVVTESVFSE--LSNLKALHLDD---------NSFTLKFSHDWIPP--FQLIIILLGSCQMGPHFPKWLQTQNQIEV  338 (789)
Q Consensus       272 ~l~~~~~~~~~~~--l~~L~~L~L~~---------n~i~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  338 (789)
                      .+.+.++......  .++++.+.++.         +.+.......+.++  .+|+.|++++|.+.+..+..+..+++|+.
T Consensus       215 ~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  294 (844)
T 3j0a_A          215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV  294 (844)
T ss_dssp             CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred             cCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence            4443333321111  13344444442         22222223333332  56777777777777777778888888889


Q ss_pred             EEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCc
Q 042537          339 LDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFS  418 (789)
Q Consensus       339 L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~  418 (789)
                      |++++|.+.+..+..|..+ ++|+.|++++|.++                         +..+..+..            
T Consensus       295 L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~-------------------------~~~~~~~~~------------  336 (844)
T 3j0a_A          295 LNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLG-------------------------ELYSSNFYG------------  336 (844)
T ss_dssp             EEEESCCCCEECTTTTTTC-SSCCEEEEESCCCS-------------------------CCCSCSCSS------------
T ss_pred             EECCCCcCCCCChHHhcCC-CCCCEEECCCCCCC-------------------------ccCHHHhcC------------
Confidence            9998888876665544332 24444444444443                         222221111            


Q ss_pred             cccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCc
Q 042537          419 ESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFF  498 (789)
Q Consensus       419 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  498 (789)
                                +++|+.|++++|.+.+..+..|..+++|+.|++++|.+++.     ..+++|+.|++++|+++. +|.. 
T Consensus       337 ----------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~-  399 (844)
T 3j0a_A          337 ----------LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI-  399 (844)
T ss_dssp             ----------CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC-
T ss_pred             ----------CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc-
Confidence                      16788888888888877777888899999999999998843     237889999999999883 4433 


Q ss_pred             cCCCCCcEEeCCCCcccccCch-hhhhcCCCCcEEEcCCCcccccCCC-CccCCCcCceEeccCCcccccCCcccccccc
Q 042537          499 KSCSQLILMDLGKNGLSGEIPT-WIGEGLPKLVVLSLKSNKFHGNIPF-QVCQLSYIQILDLSLNNISGIIPKCLNNFTG  576 (789)
Q Consensus       499 ~~l~~L~~L~ls~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  576 (789)
                        ..+++.|++++|++. .++. .....+++|+.|++++|++++..+. .+..+++|+.|++++|.+++..+..+.    
T Consensus       400 --~~~l~~L~ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~----  472 (844)
T 3j0a_A          400 --NLTANLIHLSENRLE-NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC----  472 (844)
T ss_dssp             --CTTCCEEECCSCCCC-SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC----
T ss_pred             --ccccceeecccCccc-cCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc----
Confidence              568899999999998 4433 2333689999999999999865443 456689999999999998744322110    


Q ss_pred             CcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEcc
Q 042537          577 MAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLS  656 (789)
Q Consensus       577 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  656 (789)
                                                              ......++.|+.|+|++|++++..|..|..+++|++|+|+
T Consensus       473 ----------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  512 (844)
T 3j0a_A          473 ----------------------------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN  512 (844)
T ss_dssp             ----------------------------------------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred             ----------------------------------------hhhhcCcccccEEECCCCcccccChhHccchhhhheeECC
Confidence                                                    0011234556999999999999999999999999999999


Q ss_pred             CCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCC
Q 042537          657 RNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP  736 (789)
Q Consensus       657 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  736 (789)
                      +|++++..|..+.  ++|+.|||++|++++.+|..|   .+|+.+++++|++.|.++......    ....++...|+.+
T Consensus       513 ~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~----~~~~~~~~~~~~~  583 (844)
T 3j0a_A          513 SNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFIN----WLNHTNVTIAGPP  583 (844)
T ss_dssp             SCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHH----HHHHTTTTTCCCG
T ss_pred             CCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHH----HHHhcCccccccc
Confidence            9999977776666  899999999999999999775   478999999999999988543222    1224556677777


Q ss_pred             CCCCCCCCCC
Q 042537          737 LRNKCPDEDS  746 (789)
Q Consensus       737 l~~~c~~~~~  746 (789)
                      ....|..+..
T Consensus       584 ~~~~C~~p~~  593 (844)
T 3j0a_A          584 ADIYCVYPDS  593 (844)
T ss_dssp             GGCCCSSCSS
T ss_pred             ccCccCCchh
Confidence            7677866544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-52  Score=482.29  Aligned_cols=531  Identities=19%  Similarity=0.176  Sum_probs=389.7

Q ss_pred             CCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEE
Q 042537           77 LRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLN  156 (789)
Q Consensus        77 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~  156 (789)
                      -++++.++++++  .+|..+.  ++|++|++++|.+++..+.+|.++++|++|++++|+++++  .|..|+++++|++|+
T Consensus        13 ~~~~~c~~~~l~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i--~~~~~~~l~~L~~L~   86 (606)
T 3vq2_A           13 NITYQCMDQKLS--KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI--EDKAWHGLHHLSNLI   86 (606)
T ss_dssp             TTEEECTTSCCS--SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTTTTTCTTCCEEE
T ss_pred             CCceEccCCCcc--cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc--CHHHhhchhhcCEeE
Confidence            357888888888  4676654  8999999999999988888999999999999999999885  357889999999999


Q ss_pred             cCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCC
Q 042537          157 LEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGF  236 (789)
Q Consensus       157 L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  236 (789)
                      +++|.+++..|.  .+.++  +                         +|++|++++|.+++..+..|+++++|++|+++ 
T Consensus        87 Ls~n~l~~~~p~--~~~~l--~-------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-  136 (606)
T 3vq2_A           87 LTGNPIQSFSPG--SFSGL--T-------------------------SLENLVAVETKLASLESFPIGQLITLKKLNVA-  136 (606)
T ss_dssp             CTTCCCCCCCTT--SSTTC--T-------------------------TCCEEECTTSCCCCSSSSCCTTCTTCCEEECC-
T ss_pred             CCCCcccccChh--hcCCc--c-------------------------cCCEEEccCCccccccccccCCCCCCCEEeCC-
Confidence            999999887663  33333  4                         45555555555554444555555555555555 


Q ss_pred             CCccEEecCCCcCcc-cchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCc----EEEccCCcccccccCCCCCccc
Q 042537          237 NELEELFLGKNRLNG-TINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLK----ALHLDDNSFTLKFSHDWIPPFQ  311 (789)
Q Consensus       237 n~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~----~L~L~~n~i~~~~~~~~~~~~~  311 (789)
                               +|.+.+ .+|..|+++++|++|++++|.+++ ++...|..+++|+    +|++++|.++...+..+... +
T Consensus       137 ---------~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~  205 (606)
T 3vq2_A          137 ---------HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-K  205 (606)
T ss_dssp             ---------SSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-E
T ss_pred             ---------CCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCCCcceeCcccccCc-e
Confidence                     333332 235555666666666666666653 2222344443332    56666666654444443333 5


Q ss_pred             ceeEeccCccCC-CCCchhccCCCCccEEEccCCcCCCC------cchhHhhhc-cCCCeeee-ccccccccCCCCCCCC
Q 042537          312 LIIILLGSCQMG-PHFPKWLQTQNQIEVLDISDAGISDT------VPDWFWDLS-HTIADFNL-SNNHIKGKLPNLSLRF  382 (789)
Q Consensus       312 L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~ls~n~i~~~------~~~~~~~~~-~~L~~L~l-~~n~l~~~~p~~~~~~  382 (789)
                      |+.|++++|.+. ...|.++..++.++.+++..+.+.+.      .+..+.... -.++.+++ ..+.+.+.+|.  +..
T Consensus       206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~  283 (606)
T 3vq2_A          206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHC  283 (606)
T ss_dssp             EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGG
T ss_pred             eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--ccc
Confidence            666666666554 35567777888888877765444321      111111100 02333333 33444443332  333


Q ss_pred             CCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcC
Q 042537          383 DPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLA  462 (789)
Q Consensus       383 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  462 (789)
                      +                     ++++.|++++|.+.... ..  ...++|++|++++|.+ +.+| .+ .+++|+.|+++
T Consensus       284 l---------------------~~L~~L~l~~~~~~~l~-~l--~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~  336 (606)
T 3vq2_A          284 L---------------------ANVSAMSLAGVSIKYLE-DV--PKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLT  336 (606)
T ss_dssp             G---------------------TTCSEEEEESCCCCCCC-CC--CTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEE
T ss_pred             C---------------------CCCCEEEecCccchhhh-hc--cccccCCEEEcccccC-cccc-cC-CCCccceeecc
Confidence            3                     45555555555554433 11  1227899999999999 5777 55 99999999999


Q ss_pred             CCcCcccCCccccccCcccEEEccCCeeeee--CCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCccc
Q 042537          463 NNFFSGKIPKSMGFLHSIQTLSLYNNSLIGE--LPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH  540 (789)
Q Consensus       463 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  540 (789)
                      +|+..+..  .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+. .+|..+. .+++|+.|++++|++.
T Consensus       337 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~  412 (606)
T 3vq2_A          337 MNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLK  412 (606)
T ss_dssp             SCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEE
T ss_pred             CCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccC
Confidence            99766444  577899999999999999876  4788999999999999999998 6776555 7999999999999999


Q ss_pred             ccCC-CCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccc
Q 042537          541 GNIP-FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEY  619 (789)
Q Consensus       541 ~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (789)
                      +..+ ..+..+++|++|++++|++++..|..+..+++|                                          
T Consensus       413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------------------------  450 (606)
T 3vq2_A          413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL------------------------------------------  450 (606)
T ss_dssp             STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC------------------------------------------
T ss_pred             CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC------------------------------------------
Confidence            8877 688999999999999999999888888776666                                          


Q ss_pred             ccccCceeEEEcccCcccc-ccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCC
Q 042537          620 RSTLGLVKILDFSMNKLSG-TIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRL  698 (789)
Q Consensus       620 ~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  698 (789)
                             +.|++++|++++ .+|..|+.+++|++|+|++|++++.+|..+..+++|++|+|++|++++.+|..|..+++|
T Consensus       451 -------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  523 (606)
T 3vq2_A          451 -------NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL  523 (606)
T ss_dssp             -------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred             -------CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence                   899999999997 478899999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEeccCCcccccCCCC-Cccc-cccccccCCCCCCCCCCC
Q 042537          699 SVMNLSYNNLSGKIPLG-TQLQ-SFNASVYAGNPELCGLPL  737 (789)
Q Consensus       699 ~~L~ls~N~l~~~~p~~-~~~~-~~~~~~~~~n~~lc~~~l  737 (789)
                      ++|++++|+++ .+|.. ..+. .+....+.+||+.|+|++
T Consensus       524 ~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          524 STLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            99999999998 56654 2232 366677899999999885

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.3e-54  Score=495.28  Aligned_cols=495  Identities=16%  Similarity=0.229  Sum_probs=314.5

Q ss_pred             HHHHHHHHHHhhcCcCCCC--------CCCCCCCCCCCCCCCce---eeeEecCCCCcEEEEEcCCCCCCCCcccccCcc
Q 042537            2 EEEREALLEFKQSLVDEYG--------ILSSWGREDDKRDCCYW---RGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPS   70 (789)
Q Consensus         2 ~~~~~~ll~~~~~~~~~~~--------~~~~w~~~~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~   70 (789)
                      ..|++||.++++++.++..        ...+|+   .+.+||.|   .||+|+. .+||++|+|++    +.+.|.+|++
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~----~~l~g~lp~~  100 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEG----FGASGRVPDA  100 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTT----SCCEEEECGG
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecC----cccCCcCChH
Confidence            3689999999999876543        244798   47899999   9999974 48999999999    8999999999


Q ss_pred             ccCCCCCCEEeCCCCCCCCC-----------CCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCC
Q 042537           71 LLKLYHLRHLDLSENDFSGS-----------RIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKS  139 (789)
Q Consensus        71 ~~~l~~L~~L~Ls~n~i~~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~  139 (789)
                      ++++++|++|+|++|.+...           .+|...  +.+|+ +++++|.+.+.+|..+..+                
T Consensus       101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~----------------  161 (636)
T 4eco_A          101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDL----------------  161 (636)
T ss_dssp             GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHH----------------
T ss_pred             HhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHH----------------
Confidence            99999999999999976211           122221  33444 5555555554444333211                


Q ss_pred             cchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEc--cCCCCCCCchhHHHhhcCCCcEEEccCCCCcc
Q 042537          140 RDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYL--FENSLSSSIYPWLFNISSKLVVLDLDSNLLQG  217 (789)
Q Consensus       140 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l--~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~  217 (789)
                               +..+..+++....+.....          ..++.+++  ..|++++ +|..+.++. +|++|++++|.+++
T Consensus       162 ---------~~~l~~~~l~~~~~~~~~~----------~~l~~l~l~~~~n~l~~-ip~~l~~l~-~L~~L~Ls~n~l~~  220 (636)
T 4eco_A          162 ---------IKDCINSDPQQKSIKKSSR----------ITLKDTQIGQLSNNITF-VSKAVMRLT-KLRQFYMGNSPFVA  220 (636)
T ss_dssp             ---------HHHHHHHCTTSCCCCCCCC----------CCCCTTTTTCCSCEEEE-ECGGGGGCT-TCCEEEEESCCCCG
T ss_pred             ---------HHHHhhcCccccccccccc----------cchhhhhhccccCCCcc-CCHHHhccc-CCCEEECcCCcccc
Confidence                     1111112222111110000          11222211  1344444 555444443 56666666666555


Q ss_pred             c-----------------Cchhhh--cCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCC-CCC-c
Q 042537          218 S-----------------LLEPFD--RMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNS-LTG-V  276 (789)
Q Consensus       218 ~-----------------~~~~~~--~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~  276 (789)
                      .                 +|..++  ++++|++|+++          +|.+.+.+|..|+++++|++|++++|+ +++ .
T Consensus       221 ~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~----------~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~  290 (636)
T 4eco_A          221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY----------NCPNLTKLPTFLKALPEMQLINVACNRGISGEQ  290 (636)
T ss_dssp             GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE----------CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH
T ss_pred             ccccccccccccchhcccCchhhhhcccCCCCEEEec----------CCcCCccChHHHhcCCCCCEEECcCCCCCcccc
Confidence            3                 455555  55555555555          444455555555555555555555555 554 4


Q ss_pred             cChhhhhcC------CCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCch--hccCCCCccEEEccCCcCCC
Q 042537          277 VTESVFSEL------SNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPK--WLQTQNQIEVLDISDAGISD  348 (789)
Q Consensus       277 ~~~~~~~~l------~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~ls~n~i~~  348 (789)
                      +|. .+..+      ++|++|++++|+++                         .+|.  .+..+++|++|++++|.+++
T Consensus       291 lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-------------------------~ip~~~~l~~l~~L~~L~L~~N~l~g  344 (636)
T 4eco_A          291 LKD-DWQALADAPVGEKIQIIYIGYNNLK-------------------------TFPVETSLQKMKKLGMLECLYNQLEG  344 (636)
T ss_dssp             HHH-HHHHHHHSGGGGTCCEEECCSSCCS-------------------------SCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred             chH-HHHhhhccccCCCCCEEECCCCcCC-------------------------ccCchhhhccCCCCCEEeCcCCcCcc
Confidence            444 23332      44444444444333                         3343  44444444444444444432


Q ss_pred             CcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccC
Q 042537          349 TVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSIN  428 (789)
Q Consensus       349 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  428 (789)
                      .+| .                          +..+                                             
T Consensus       345 ~ip-~--------------------------~~~l---------------------------------------------  352 (636)
T 4eco_A          345 KLP-A--------------------------FGSE---------------------------------------------  352 (636)
T ss_dssp             ECC-C--------------------------CEEE---------------------------------------------
T ss_pred             chh-h--------------------------hCCC---------------------------------------------
Confidence            222 1                          1111                                             


Q ss_pred             CCCCCEEEcCCCccccCCCcccccCCC-CcEEEcCCCcCcccCCccccccC--cccEEEccCCeeeeeCCcCcc------
Q 042537          429 GHKLEFLDLSNNILSGRLPDCWMQFDR-LAVLSLANNFFSGKIPKSMGFLH--SIQTLSLYNNSLIGELPSFFK------  499 (789)
Q Consensus       429 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~------  499 (789)
                       ++|++|++++|+++ .+|..+.++++ |+.|++++|+++ .+|..+...+  +|++|++++|.+.+..|..+.      
T Consensus       353 -~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~  429 (636)
T 4eco_A          353 -IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP  429 (636)
T ss_dssp             -EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred             -CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence             45666666666666 55666666666 777777777776 5566655543  677777777777776666666      


Q ss_pred             -CCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCC-ccC-------CCcCceEeccCCcccccCCcc
Q 042537          500 -SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQ-VCQ-------LSYIQILDLSLNNISGIIPKC  570 (789)
Q Consensus       500 -~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~-------l~~L~~L~Ls~N~l~~~~p~~  570 (789)
                       .+++|++|++++|+++ .+|..++..+++|++|++++|+++ .+|.. +..       +++|+.|++++|+++ .+|..
T Consensus       430 ~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  506 (636)
T 4eco_A          430 FKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD  506 (636)
T ss_dssp             CCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred             ccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence             6678888888888887 777777766788888888888887 44443 322       238888899888888 55555


Q ss_pred             cc--ccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccc
Q 042537          571 LN--NFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLV  648 (789)
Q Consensus       571 ~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  648 (789)
                      +.  .+++|                                                 +.|++++|++++ +|..+..++
T Consensus       507 ~~~~~l~~L-------------------------------------------------~~L~Ls~N~l~~-ip~~~~~l~  536 (636)
T 4eco_A          507 FRATTLPYL-------------------------------------------------VGIDLSYNSFSK-FPTQPLNSS  536 (636)
T ss_dssp             GSTTTCTTC-------------------------------------------------CEEECCSSCCSS-CCCGGGGCS
T ss_pred             hhhccCCCc-------------------------------------------------CEEECCCCCCCC-cChhhhcCC
Confidence            43  44444                                                 888999999886 888888899


Q ss_pred             cCcEEEc------cCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccccc
Q 042537          649 GLVALNL------SRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGK  711 (789)
Q Consensus       649 ~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  711 (789)
                      +|++|+|      ++|++.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|++||+++|++...
T Consensus       537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            9999988      56788889999999999999999999999 57787765  7999999999988743

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6e-52  Score=491.68  Aligned_cols=514  Identities=21%  Similarity=0.198  Sum_probs=384.4

Q ss_pred             CCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCC-CccccCCCCCcEEeccCccCCCCcchHHhhCCCCC
Q 042537           73 KLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPI-PSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPS  151 (789)
Q Consensus        73 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  151 (789)
                      -.+++++|||++|.+++. .+..|.++++|++|+|++|.+.+.+ |.+|.++++|++|+|++|.++++  .|..|+++++
T Consensus        22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~--~p~~~~~l~~   98 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL--HPDAFQGLFH   98 (844)
T ss_dssp             SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE--CTTSSCSCSS
T ss_pred             CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc--CHhHccCCcc
Confidence            446788888888888765 6777888888888888888554444 77788888888888888888774  4677888888


Q ss_pred             CCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCc-hhhhcCCCCc
Q 042537          152 LRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLL-EPFDRMVSLR  230 (789)
Q Consensus       152 L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~  230 (789)
                      |++|++++|.+.+..+....+.++  +                         +|++|++++|.+++..+ ..|+++++|+
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L--~-------------------------~L~~L~Ls~N~l~~~~~~~~~~~L~~L~  151 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNL--K-------------------------ALTRLDLSKNQIRSLYLHPSFGKLNSLK  151 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSC--S-------------------------SCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred             cCEeeCcCCCCCcccccCcccccc--C-------------------------CCCEEECCCCcccccccchhHhhCCCCC
Confidence            888888888877654432223333  4                         55555555555554433 4566666666


Q ss_pred             EEECCCCCccEEecCCCcCcccchhhhhCC--CCCCEEEccCCCCCCccChhhhhcCC------CCcEEEccCCcccccc
Q 042537          231 TLYLGFNELEELFLGKNRLNGTINQWLSRM--YKLDALSLSGNSLTGVVTESVFSELS------NLKALHLDDNSFTLKF  302 (789)
Q Consensus       231 ~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~------~L~~L~L~~n~i~~~~  302 (789)
                      .|+++          +|.+++..+..+..+  ++|+.|++++|.+.+..+. .+..++      .|++|++++|.+.+..
T Consensus       152 ~L~Ls----------~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  220 (844)
T 3j0a_A          152 SIDFS----------SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDI  220 (844)
T ss_dssp             EEEEE----------SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTT
T ss_pred             EEECC----------CCcCCeeCHHHcccccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhH
Confidence            66666          444444455555555  6677777777777655544 244443      4999999999988777


Q ss_pred             cCCCCC---cccceeEeccCcc---------CCCCCchhccCC--CCccEEEccCCcCCCCcchhHhhhccCCCeeeecc
Q 042537          303 SHDWIP---PFQLIIILLGSCQ---------MGPHFPKWLQTQ--NQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSN  368 (789)
Q Consensus       303 ~~~~~~---~~~L~~L~l~~~~---------~~~~~~~~l~~l--~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~  368 (789)
                      +..+..   ..+++.+.+..+.         +....+..|..+  ++|+.|++++|.+.+..+..+              
T Consensus       221 ~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--------------  286 (844)
T 3j0a_A          221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--------------  286 (844)
T ss_dssp             TSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--------------
T ss_pred             HHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh--------------
Confidence            666543   3567778776332         222333445444  789999999999876554433              


Q ss_pred             ccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCc
Q 042537          369 NHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPD  448 (789)
Q Consensus       369 n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  448 (789)
                                  ..++.|+.|++++|.+.+..+..+..                      +++|++|++++|.+++..+.
T Consensus       287 ------------~~l~~L~~L~L~~n~i~~~~~~~~~~----------------------l~~L~~L~Ls~N~l~~~~~~  332 (844)
T 3j0a_A          287 ------------ETLKDLKVLNLAYNKINKIADEAFYG----------------------LDNLQVLNLSYNLLGELYSS  332 (844)
T ss_dssp             ------------SSCCCCCEEEEESCCCCEECTTTTTT----------------------CSSCCEEEEESCCCSCCCSC
T ss_pred             ------------hcCCCCCEEECCCCcCCCCChHHhcC----------------------CCCCCEEECCCCCCCccCHH
Confidence                        33344555555555544443322222                      27899999999999988899


Q ss_pred             ccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCC
Q 042537          449 CWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPK  528 (789)
Q Consensus       449 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~  528 (789)
                      .|..+++|+.|++++|++.+..+..|..+++|++|++++|.+++.     ..+++|+.|++++|+++ .+|..    ..+
T Consensus       333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~----~~~  402 (844)
T 3j0a_A          333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI----NLT  402 (844)
T ss_dssp             SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC----CTT
T ss_pred             HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc----ccc
Confidence            999999999999999999988888899999999999999999843     33889999999999998 77754    568


Q ss_pred             CcEEEcCCCcccccCC-CCccCCCcCceEeccCCcccccCCc-cccccccCcccCCCccccccCcccccccccccccccc
Q 042537          529 LVVLSLKSNKFHGNIP-FQVCQLSYIQILDLSLNNISGIIPK-CLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVD  606 (789)
Q Consensus       529 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (789)
                      ++.|++++|++.+... ..+..+++|+.|++++|++++..+. .+..                                 
T Consensus       403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---------------------------------  449 (844)
T 3j0a_A          403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE---------------------------------  449 (844)
T ss_dssp             CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS---------------------------------
T ss_pred             cceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc---------------------------------
Confidence            9999999999986432 2355899999999999999865443 1222                                 


Q ss_pred             eeEEEeeccccccccccCceeEEEcccCccc-----cccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCC
Q 042537          607 NVVLTWKGSQHEYRSTLGLVKILDFSMNKLS-----GTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQ  681 (789)
Q Consensus       607 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  681 (789)
                                      ++.|+.|++++|.++     +..|..|..+++|++|+|++|++++.+|..|..+++|+.|+|++
T Consensus       450 ----------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  513 (844)
T 3j0a_A          450 ----------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS  513 (844)
T ss_dssp             ----------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred             ----------------CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence                            344589999999997     44556789999999999999999998899999999999999999


Q ss_pred             CcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCCCC
Q 042537          682 NQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLR  738 (789)
Q Consensus       682 N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~l~  738 (789)
                      |++++..|..+.  ++|++||+++|++++.+|..  +..+....+.|||+.|+|++.
T Consensus       514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred             CCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence            999988887776  89999999999999998854  556777789999999999864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.6e-51  Score=474.90  Aligned_cols=519  Identities=19%  Similarity=0.278  Sum_probs=302.0

Q ss_pred             HHHHHHHHHHhhcCcCCCCCCCCCCCCC--CCCCC--Cce------------eeeEecCCCCcEEEEEcCCCCCCCCccc
Q 042537            2 EEEREALLEFKQSLVDEYGILSSWGRED--DKRDC--CYW------------RGVRCSNTTGHVIVLDLQVLVHSEPLKG   65 (789)
Q Consensus         2 ~~~~~~ll~~~~~~~~~~~~~~~w~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~l~L~~~~~~~~l~~   65 (789)
                      .+|++||++||+++.+|     +|+..+  ...+|  |.|            .||+|+. .+||++|+|++    +.+.|
T Consensus       268 ~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----~~L~G  337 (876)
T 4ecn_A          268 IKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----FGAKG  337 (876)
T ss_dssp             HHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----TCCEE
T ss_pred             hHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc----CCCCC
Confidence            47999999999999877     786311  01345  999            9999975 68999999999    89999


Q ss_pred             ccCccccCCCCCCEEeC-CCCCCCCCCCcccccCC-CCCC-----EE---------ec-CCCcCC-----------CCCC
Q 042537           66 TISPSLLKLYHLRHLDL-SENDFSGSRIPEFIGSL-NKLR-----YL---------SL-SSAEFE-----------GPIP  117 (789)
Q Consensus        66 ~l~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~~l-~~L~-----~L---------~L-s~n~i~-----------~~~p  117 (789)
                      .+|++|+++++|++|+| ++|.+++. .+...... ..+.     .+         +. ....+.           ...+
T Consensus       338 ~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~  416 (876)
T 4ecn_A          338 RVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP  416 (876)
T ss_dssp             EECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred             cCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence            99999999999999999 88876543 12110000 0000     00         00 000000           0000


Q ss_pred             ccccCCCCCcEEeccC--ccCCCCcchHHhhCCCCCCCEEEcCCCCCCC-----------------CccccccccccCCC
Q 042537          118 SQLGNLSRLKYLDLSY--INLNKSRDWLRIIDKLPSLRTLNLEHCHLPP-----------------IIPSDLLHLNFSTS  178 (789)
Q Consensus       118 ~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~~~l~~~  178 (789)
                      ........++.+.+..  |++++   +|..++++++|++|+|++|.+++                 .+|..+.+.++  +
T Consensus       417 i~~~~~l~l~~l~l~~~~N~L~~---IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L--~  491 (876)
T 4ecn_A          417 IKKDSRISLKDTQIGNLTNRITF---ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL--K  491 (876)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEE---ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC--T
T ss_pred             cccccccchhhceeccccCcccc---hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC--C
Confidence            0111222233333322  44444   34455555555555555555555                 14422222244  6


Q ss_pred             CCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCC-Ccc-cCchhhhcCC-------CCcEEECCCCCccEEecCCCcC
Q 042537          179 SLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNL-LQG-SLLEPFDRMV-------SLRTLYLGFNELEELFLGKNRL  249 (789)
Q Consensus       179 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~L~~L~L~~n~l  249 (789)
                      +|++|++++|.+.+.+|..+..+. +|+.|++++|+ +++ .+|..+++++       +|+.|+++          +|.+
T Consensus       492 ~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls----------~N~L  560 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG----------YNNL  560 (876)
T ss_dssp             TCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC----------SSCC
T ss_pred             CCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee----------CCcC
Confidence            666666666666666665555554 66777777666 665 5565555444       67777776          4445


Q ss_pred             cccchh--hhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCc
Q 042537          250 NGTINQ--WLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFP  327 (789)
Q Consensus       250 ~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  327 (789)
                      + .+|.  .|+++++|++|+|++|.++ .+|  .|..+++|++|++++|++.                         .+|
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-------------------------~lp  611 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-------------------------EIP  611 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-------------------------CCC
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-------------------------cch
Confidence            5 4555  6777777888888887777 666  4777777777777777766                         233


Q ss_pred             hhccCCCC-ccEEEccCCcCCCCcchhHhhhc-cCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCC
Q 042537          328 KWLQTQNQ-IEVLDISDAGISDTVPDWFWDLS-HTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPS  405 (789)
Q Consensus       328 ~~l~~l~~-L~~L~ls~n~i~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  405 (789)
                      ..+..+++ |+.|++++|.++ .+|..+.... ++|+.|++++|.+.+.+|.                         .+.
T Consensus       612 ~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~-------------------------l~~  665 (876)
T 4ecn_A          612 EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN-------------------------ISC  665 (876)
T ss_dssp             TTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS-------------------------CSS
T ss_pred             HHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc-------------------------chh
Confidence            33444444 555555555554 2222211100 0122233333322222221                         000


Q ss_pred             CCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcc-cccCCCCcEEEcCCCcCcccCCccccccCcccEEE
Q 042537          406 NASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDC-WMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLS  484 (789)
Q Consensus       406 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  484 (789)
                      .+.                 ....++|+.|++++|.++ .+|.. +..+++|+.|++++|+++ .+|..+....      
T Consensus       666 ~l~-----------------~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~------  720 (876)
T 4ecn_A          666 SMD-----------------DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK------  720 (876)
T ss_dssp             CTT-----------------TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT------
T ss_pred             hhc-----------------cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc------
Confidence            000                 000045666666666666 33333 345666666666666666 3333221110      


Q ss_pred             ccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhh-hcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcc
Q 042537          485 LYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIG-EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNI  563 (789)
Q Consensus       485 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  563 (789)
                                +..+.++++|+.|++++|+++ .+|..++ ..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+ 
T Consensus       721 ----------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-  787 (876)
T 4ecn_A          721 ----------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-  787 (876)
T ss_dssp             ----------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-
T ss_pred             ----------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-
Confidence                      001223346666677777666 6666554 346777777777777765 56666677777777777663 


Q ss_pred             cccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchh
Q 042537          564 SGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEE  643 (789)
Q Consensus       564 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  643 (789)
                                                                                        ++++|++.+.+|..
T Consensus       788 ------------------------------------------------------------------~ls~N~l~~~ip~~  801 (876)
T 4ecn_A          788 ------------------------------------------------------------------DAEGNRILRQWPTG  801 (876)
T ss_dssp             ------------------------------------------------------------------CTTCCBCCCCCCTT
T ss_pred             ------------------------------------------------------------------CcccccccccChHH
Confidence                                                                              23456666777878


Q ss_pred             hhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccc
Q 042537          644 IMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS  709 (789)
Q Consensus       644 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  709 (789)
                      |..+++|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+..+.....+..+.+.+|++.
T Consensus       802 l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          802 ITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             GGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             HhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            88888888888888888 57777765  58888888888888777777766666777777777654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.4e-49  Score=447.69  Aligned_cols=510  Identities=20%  Similarity=0.185  Sum_probs=331.4

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHh
Q 042537           66 TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRI  145 (789)
Q Consensus        66 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  145 (789)
                      .+|..+.  +++++|++++|.+++. .+..|.++++|++|++++|++++..|.+|.++++|++|+|++|+++.+  .|..
T Consensus        21 ~ip~~l~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~   95 (570)
T 2z63_A           21 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGA   95 (570)
T ss_dssp             SCCSSSC--SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTT
T ss_pred             ccCCCcc--ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc--CHhh
Confidence            3454442  4788999999988865 566788899999999999988877788888999999999999988875  3467


Q ss_pred             hCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCC-CchhHHHhhcCCCcEEEccCCCCcccCchhhh
Q 042537          146 IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS-SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFD  224 (789)
Q Consensus       146 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~  224 (789)
                      |+++++|++|++++|.+.+..+  ..+.++  ++|++|++++|.+.+ .+|..+.++. +|++|++++|.+++..+..++
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~--~~~~~l--~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~l~~n~l~~~~~~~~~  170 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLEN--FPIGHL--KTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLR  170 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTT--CSCTTC--TTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECTTSCCCEECGGGGH
T ss_pred             hcCccccccccccccccccCCC--cccccc--ccccEEecCCCccceecChhhhcccC-CCCEEeCcCCccceecHHHcc
Confidence            8889999999999998887665  345555  888888888888876 4677666655 899999999999888888888


Q ss_pred             cCCCC----cEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccc
Q 042537          225 RMVSL----RTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTL  300 (789)
Q Consensus       225 ~l~~L----~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~  300 (789)
                      .+++|    +.|+++          +|.+.+..+..|... +|++|++++|..........+..+++++...+....+..
T Consensus       171 ~l~~L~~~~~~L~l~----------~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  239 (570)
T 2z63_A          171 VLHQMPLLNLSLDLS----------LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  239 (570)
T ss_dssp             HHHTCTTCCCEEECT----------TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred             chhccchhhhhcccC----------CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence            88877    677777          555555566666665 789999988865533333457778888777665433221


Q ss_pred             cccCCCCCcccceeEeccCccCCCCCchhccCCC--CccEEEccCC-cCCCCcchhHhhhccCCCeeeeccccccccCCC
Q 042537          301 KFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQN--QIEVLDISDA-GISDTVPDWFWDLSHTIADFNLSNNHIKGKLPN  377 (789)
Q Consensus       301 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~ls~n-~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~  377 (789)
                      ..        .++.          .....+..++  .++.++++++ .+.+..+..+.. .++|+.|++++|.++ .+|.
T Consensus       240 ~~--------~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~  299 (570)
T 2z63_A          240 EG--------NLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKD  299 (570)
T ss_dssp             CS--------SCEE----------CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCB
T ss_pred             ch--------hhhh----------cchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hhhh
Confidence            10        0000          0011111111  2455566555 444444444433 235555555555554 2333


Q ss_pred             CCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCc
Q 042537          378 LSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLA  457 (789)
Q Consensus       378 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  457 (789)
                       .+..+ .|++|++++|.+.                     ..+..    .+++|+.|++++|.+.+..+.  ..+++|+
T Consensus       300 -~~~~~-~L~~L~l~~n~~~---------------------~l~~~----~l~~L~~L~l~~n~~~~~~~~--~~~~~L~  350 (570)
T 2z63_A          300 -FSYNF-GWQHLELVNCKFG---------------------QFPTL----KLKSLKRLTFTSNKGGNAFSE--VDLPSLE  350 (570)
T ss_dssp             -CCSCC-CCSEEEEESCBCS---------------------SCCBC----BCSSCCEEEEESCBSCCBCCC--CBCTTCC
T ss_pred             -hhccC-CccEEeeccCccc---------------------ccCcc----cccccCEEeCcCCcccccccc--ccCCCCC
Confidence             12222 2333333333322                     11110    014455555555554433332  3445555


Q ss_pred             EEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCC
Q 042537          458 VLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN  537 (789)
Q Consensus       458 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n  537 (789)
                      .|++++|.+++..                      ..+..+..+++|++|++++|.+. .++..+. .+++|++|++++|
T Consensus       351 ~L~l~~n~l~~~~----------------------~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~-~l~~L~~L~l~~n  406 (570)
T 2z63_A          351 FLDLSRNGLSFKG----------------------CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHS  406 (570)
T ss_dssp             EEECCSSCCBEEE----------------------EEEHHHHTCSCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTS
T ss_pred             EEeCcCCccCccc----------------------cccccccccCccCEEECCCCccc-ccccccc-ccCCCCEEEccCC
Confidence            5555555554322                      01333444455555555555544 2333222 4555555555555


Q ss_pred             cccccCC-CCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccc
Q 042537          538 KFHGNIP-FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQ  616 (789)
Q Consensus       538 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (789)
                      ++.+..+ ..+..+++|++|++++|.+.+..|..+..+++|                                       
T Consensus       407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------------------------  447 (570)
T 2z63_A          407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---------------------------------------  447 (570)
T ss_dssp             EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC---------------------------------------
T ss_pred             ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC---------------------------------------
Confidence            5554433 345566666666666666666555555554444                                       


Q ss_pred             cccccccCceeEEEcccCccc-cccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcC
Q 042537          617 HEYRSTLGLVKILDFSMNKLS-GTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL  695 (789)
Q Consensus       617 ~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  695 (789)
                                +.|++++|+++ +.+|..+..+++|++|+|++|++++..|..+..+++|+.|++++|++++..|..|..+
T Consensus       448 ----------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  517 (570)
T 2z63_A          448 ----------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL  517 (570)
T ss_dssp             ----------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             ----------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence                      67777777776 4678888999999999999999998889999999999999999999999888889999


Q ss_pred             CCCCeEeccCCcccccCCCCCcc
Q 042537          696 SRLSVMNLSYNNLSGKIPLGTQL  718 (789)
Q Consensus       696 ~~L~~L~ls~N~l~~~~p~~~~~  718 (789)
                      ++|++|++++|+++|.+|....+
T Consensus       518 ~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          518 TSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             TTCCEEECCSSCBCCCTTTTHHH
T ss_pred             cCCcEEEecCCcccCCCcchHHH
Confidence            99999999999999999976443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.9e-48  Score=438.51  Aligned_cols=500  Identities=20%  Similarity=0.211  Sum_probs=337.1

Q ss_pred             CCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCC
Q 042537           34 CCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFE  113 (789)
Q Consensus        34 ~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~  113 (789)
                      .|.|.|+ |+.          ++    +.+ ..+|+.+.  ++|++|++++|++++. .|..|+++++|++|++++|+++
T Consensus         3 ~C~~~~~-c~~----------~~----~~l-~~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~   63 (549)
T 2z81_A            3 SCDASGV-CDG----------RS----RSF-TSIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRIN   63 (549)
T ss_dssp             EECTTSE-EEC----------TT----SCC-SSCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCC
T ss_pred             cCCCCce-EEC----------CC----Ccc-ccccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcC
Confidence            4999998 853          22    333 35666554  7999999999999875 6788999999999999999999


Q ss_pred             CCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCC-ccccccccccCCCCCCeEEccCCCCCC
Q 042537          114 GPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPI-IPSDLLHLNFSTSSLGALYLFENSLSS  192 (789)
Q Consensus       114 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~~~L~~L~l~~n~l~~  192 (789)
                      +..|.+|+++++|++|+|++|++++.  .|..++++++|++|++++|.+.+. .+  ..+.++  ++             
T Consensus        64 ~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~l--~~-------------  124 (549)
T 2z81_A           64 TIEGDAFYSLGSLEHLDLSDNHLSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVT--SLFPNL--TN-------------  124 (549)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCSC--CHHHHTTCTTCCEEECTTCCCSSSCSS--CSCTTC--TT-------------
T ss_pred             ccChhhccccccCCEEECCCCccCcc--CHHHhccCCCCcEEECCCCcccccchh--hhhhcc--CC-------------
Confidence            88889999999999999999999986  456799999999999999998753 23  122333  44             


Q ss_pred             CchhHHHhhcCCCcEEEccCCC-CcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCC
Q 042537          193 SIYPWLFNISSKLVVLDLDSNL-LQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGN  271 (789)
Q Consensus       193 ~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  271 (789)
                                  |++|++++|. +....+..|.++++|++|+++          +|.+++..|..++.+++|++|++++|
T Consensus       125 ------------L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~----------~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          125 ------------LQTLRIGNVETFSEIRRIDFAGLTSLNELEIK----------ALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             ------------CCEEEEEESSSCCEECTTTTTTCCEEEEEEEE----------ETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             ------------ccEEECCCCccccccCHhhhhcccccCeeecc----------CCcccccChhhhhccccCceEecccC
Confidence                        5555555554 333333455556666665555          44444455556666666666666666


Q ss_pred             CCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcc
Q 042537          272 SLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVP  351 (789)
Q Consensus       272 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~  351 (789)
                      .+. .++...+..+++|++|++++|++.+....                     .......+++|+.|++++|.+++..+
T Consensus       183 ~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~~~~~~~L~~L~l~~n~l~~~~~  240 (549)
T 2z81_A          183 ESA-FLLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPVDEVSSPMKKLAFRGSVLTDESF  240 (549)
T ss_dssp             BST-THHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred             ccc-ccchhhHhhcccccEEEccCCcccccccc---------------------ccchhhhhhcccceeccccccchhHH
Confidence            664 44544455566677777766666532100                     00112234566666666666655444


Q ss_pred             hhHhh---hccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccC
Q 042537          352 DWFWD---LSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSIN  428 (789)
Q Consensus       352 ~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  428 (789)
                      ..+..   ..++++.+++++|.+.+. +....               .........                        
T Consensus       241 ~~l~~~~~~~~~L~~l~l~~~~~~~~-~~~~~---------------~~~~~~~~l------------------------  280 (549)
T 2z81_A          241 NELLKLLRYILELSEVEFDDCTLNGL-GDFNP---------------SESDVVSEL------------------------  280 (549)
T ss_dssp             HHHHGGGGGCTTCCEEEEESCEEECC-SCCCC---------------CTTTCCCCC------------------------
T ss_pred             HHHHHHhhhhcccccccccccccccc-ccccc---------------cchhhhhhh------------------------
Confidence            43322   122444444444444321 00000               000001112                        


Q ss_pred             CCCCCEEEcCCCccccC-----CCcccccCCCCcEEEcCCCcCcccCCccc-cccCcccEEEccCCeeeeeCC---cCcc
Q 042537          429 GHKLEFLDLSNNILSGR-----LPDCWMQFDRLAVLSLANNFFSGKIPKSM-GFLHSIQTLSLYNNSLIGELP---SFFK  499 (789)
Q Consensus       429 ~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~  499 (789)
                       ++++.|++.++.+...     .+..+....+|+.|++++|++. .+|..+ ..+++|++|++++|++.+..|   ..+.
T Consensus       281 -~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  358 (549)
T 2z81_A          281 -GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG  358 (549)
T ss_dssp             -TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT
T ss_pred             -cccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhh
Confidence             3344444444433211     1222334566777777777776 455444 467778888888888776543   3467


Q ss_pred             CCCCCcEEeCCCCcccccCch--hhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccC
Q 042537          500 SCSQLILMDLGKNGLSGEIPT--WIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGM  577 (789)
Q Consensus       500 ~l~~L~~L~ls~n~l~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  577 (789)
                      .+++|++|++++|+++ .++.  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++. |..+      
T Consensus       359 ~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~------  429 (549)
T 2z81_A          359 AWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI------  429 (549)
T ss_dssp             SSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS------
T ss_pred             ccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh------
Confidence            7888888888888887 4442  33447889999999999988 5777888889999999999988743 2211      


Q ss_pred             cccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccC
Q 042537          578 AQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSR  657 (789)
Q Consensus       578 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  657 (789)
                                                                   .+.|+.||+++|++++.+    ..+++|++|+|++
T Consensus       430 ---------------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~  460 (549)
T 2z81_A          430 ---------------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISR  460 (549)
T ss_dssp             ---------------------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCS
T ss_pred             ---------------------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCC
Confidence                                                         123589999999998653    5789999999999


Q ss_pred             CcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCc
Q 042537          658 NNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQ  717 (789)
Q Consensus       658 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~  717 (789)
                      |+++ .+|. ...+++|+.|||++|++++.+|..|..+++|++|++++|++.|.+|....
T Consensus       461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  518 (549)
T 2z81_A          461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  518 (549)
T ss_dssp             SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHH
Confidence            9998 6776 57899999999999999999999999999999999999999999885433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.9e-47  Score=440.92  Aligned_cols=530  Identities=21%  Similarity=0.184  Sum_probs=387.9

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHh
Q 042537           66 TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRI  145 (789)
Q Consensus        66 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  145 (789)
                      .+|+.+.  +++++|||++|+|+.+ .+..|.++++|++|+|++|+|+++.|++|.++++|++|+|++|++++++  +..
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~--~~~  119 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGA  119 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC--GGG
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC--HHH
Confidence            4555442  4789999999999965 5678999999999999999999888889999999999999999999863  367


Q ss_pred             hCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCC-chhHHHhhcCCCcEEEccCCCCcccCchhhh
Q 042537          146 IDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSS-IYPWLFNISSKLVVLDLDSNLLQGSLLEPFD  224 (789)
Q Consensus       146 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~  224 (789)
                      |.++++|++|++++|++++..+  ..+.++  ++|++|++++|.+++. +|..+..+ ++|++|++++|++++..+..|.
T Consensus       120 f~~L~~L~~L~Ls~N~l~~l~~--~~~~~L--~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLASLEN--FPIGHL--KTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCCSTT--CCCTTC--TTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGH
T ss_pred             hcCCCCCCEEECCCCcCCCCCh--hhhhcC--cccCeeccccCccccCCCchhhccc-hhhhhhcccCcccccccccccc
Confidence            9999999999999999998777  445566  8999999999999764 44444444 4899999999999998888887


Q ss_pred             cCCCCc----EEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccc
Q 042537          225 RMVSLR----TLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTL  300 (789)
Q Consensus       225 ~l~~L~----~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~  300 (789)
                      .+.+++    .++++          .|.+....+..+. ...++.+++.+|.....+....+..+..++...+..+....
T Consensus       195 ~L~~l~~~~~~~~ls----------~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  263 (635)
T 4g8a_A          195 VLHQMPLLNLSLDLS----------LNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  263 (635)
T ss_dssp             HHHTCTTCCCEEECT----------TCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             chhhhhhhhhhhhcc----------cCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence            766554    45565          4444444444443 34577888888877655666678888888777765443321


Q ss_pred             cccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcch--hHhhhccCCCeeeeccccccccCCCC
Q 042537          301 KFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPD--WFWDLSHTIADFNLSNNHIKGKLPNL  378 (789)
Q Consensus       301 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~p~~  378 (789)
                      ...                  +.......+.....+...++..+........  ........++.+.+.++.+... +  
T Consensus       264 ~~~------------------l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~--  322 (635)
T 4g8a_A          264 EGN------------------LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-K--  322 (635)
T ss_dssp             SCC------------------CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-G--
T ss_pred             ccc------------------cccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-c--
Confidence            110                  0011122223333333333333222111110  0111223455555555544421 1  


Q ss_pred             CCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcE
Q 042537          379 SLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAV  458 (789)
Q Consensus       379 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  458 (789)
                      .+.....++.+++.+|.+.+..+..+                         ..|+.++++.|.+....  .+..+++|+.
T Consensus       323 ~~~~~~~L~~L~l~~~~~~~~~~~~l-------------------------~~L~~l~l~~n~~~~~~--~~~~l~~L~~  375 (635)
T 4g8a_A          323 DFSYNFGWQHLELVNCKFGQFPTLKL-------------------------KSLKRLTFTSNKGGNAF--SEVDLPSLEF  375 (635)
T ss_dssp             GGGSCCCCSEEEEESCEESSCCCCBC-------------------------TTCCEEEEESCCSCCBC--CCCBCTTCCE
T ss_pred             ccccchhhhhhhcccccccCcCcccc-------------------------hhhhhcccccccCCCCc--cccccccccc
Confidence            12233345555555554443322222                         56777777777665322  3456788888


Q ss_pred             EEcCCCcCcc--cCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCC
Q 042537          459 LSLANNFFSG--KIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS  536 (789)
Q Consensus       459 L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~  536 (789)
                      +++++|.+..  ..+..+..+.+|+.+++..|.+... +..+..+++|+.++++.|......+...+..+++++.++++.
T Consensus       376 L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~  454 (635)
T 4g8a_A          376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH  454 (635)
T ss_dssp             EECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred             chhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccc
Confidence            8888888753  3455666778899999999988754 556788999999999999888677766667889999999999


Q ss_pred             CcccccCCCCccCCCcCceEeccCCccc-ccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecc
Q 042537          537 NKFHGNIPFQVCQLSYIQILDLSLNNIS-GIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGS  615 (789)
Q Consensus       537 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  615 (789)
                      |.+.+..+..+..+++|+.|++++|++. +..|..|..+++|                                      
T Consensus       455 n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L--------------------------------------  496 (635)
T 4g8a_A          455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------------------------------------  496 (635)
T ss_dssp             SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------------------------------------
T ss_pred             cccccccccccccchhhhhhhhhhcccccccCchhhhhcccc--------------------------------------
Confidence            9999888888999999999999999754 4456666665555                                      


Q ss_pred             ccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcC
Q 042537          616 QHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL  695 (789)
Q Consensus       616 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  695 (789)
                                 ++|||++|++++..|..|.++++|++|+|++|+|++..|..|+.+++|+.|||++|+|++..|..|..+
T Consensus       497 -----------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  565 (635)
T 4g8a_A          497 -----------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  565 (635)
T ss_dssp             -----------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred             -----------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence                       899999999999999999999999999999999998888899999999999999999999999999988


Q ss_pred             -CCCCeEeccCCcccccCCC
Q 042537          696 -SRLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       696 -~~L~~L~ls~N~l~~~~p~  714 (789)
                       ++|++|++++|++.|.+..
T Consensus       566 ~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          566 PSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             CTTCCEEECTTCCBCCSGGG
T ss_pred             hCcCCEEEeeCCCCcccCCc
Confidence             6899999999999998874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.4e-47  Score=430.28  Aligned_cols=495  Identities=22%  Similarity=0.215  Sum_probs=349.2

Q ss_pred             CCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCC
Q 042537           46 TGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSR  125 (789)
Q Consensus        46 ~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~  125 (789)
                      ..++++|+|++    +.+.+..+.+|.++++|++|++++|++++. .+..|+++++|++|++++|.+++..|.+|+++++
T Consensus        27 ~~~l~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           27 PFSTKNLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             CSSCCEEECCS----CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             cccccEEEccC----CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence            45799999999    788877778999999999999999999865 6778999999999999999999888899999999


Q ss_pred             CcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCC-ccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCC
Q 042537          126 LKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPI-IPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSK  204 (789)
Q Consensus       126 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  204 (789)
                      |++|++++|+++.++.  ..++++++|++|++++|.+.+. .|  ..+.++  ++|++|++++|.+++..+..+..+. +
T Consensus       102 L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~lp--~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~-~  174 (570)
T 2z63_A          102 LQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLP--EYFSNL--TNLEHLDLSSNKIQSIYCTDLRVLH-Q  174 (570)
T ss_dssp             CCEEECTTSCCCCSTT--CSCTTCTTCCEEECCSSCCCCCCCC--GGGGGC--TTCCEEECTTSCCCEECGGGGHHHH-T
T ss_pred             cccccccccccccCCC--ccccccccccEEecCCCccceecCh--hhhccc--CCCCEEeCcCCccceecHHHccchh-c
Confidence            9999999999998643  3589999999999999999874 46  345556  9999999999999876666666655 7


Q ss_pred             C----cEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCC-----
Q 042537          205 L----VVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTG-----  275 (789)
Q Consensus       205 L----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----  275 (789)
                      |    +.|++++|.+++..+..|... +|+.|++++|..         -....+..+..+++++.+.+....+..     
T Consensus       175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~---------~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~  244 (570)
T 2z63_A          175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD---------SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE  244 (570)
T ss_dssp             CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCS---------CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred             cchhhhhcccCCCCceecCHHHhccC-cceeEecccccc---------cccchhhhhcCccccceeeeccccccCchhhh
Confidence            7    899999999999888888766 788888875421         112456778888888887775433221     


Q ss_pred             ccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCc-cCCCCCchhccCCCCccEEEccCCcCCCCcchhH
Q 042537          276 VVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSC-QMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWF  354 (789)
Q Consensus       276 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~  354 (789)
                      .++...+..++++                      .++.+.+.++ .+.+..+..+..+++|+.|++++|.+.+ +|.++
T Consensus       245 ~~~~~~~~~l~~l----------------------~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~  301 (570)
T 2z63_A          245 KFDKSALEGLCNL----------------------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFS  301 (570)
T ss_dssp             ECCTTTTGGGGGS----------------------EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCC
T ss_pred             hcchhhhcccccc----------------------chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhh
Confidence            1222223333222                      2333444444 3444555666666677777777776653 44444


Q ss_pred             hhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCE
Q 042537          355 WDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEF  434 (789)
Q Consensus       355 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~  434 (789)
                      ...  +|+.|++++|.+. .+|.   ..++.|+.+++++|.+.+..                     +.   ..+++|++
T Consensus       302 ~~~--~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~---------------------~~---~~~~~L~~  351 (570)
T 2z63_A          302 YNF--GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAF---------------------SE---VDLPSLEF  351 (570)
T ss_dssp             SCC--CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBC---------------------CC---CBCTTCCE
T ss_pred             ccC--CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccc---------------------cc---ccCCCCCE
Confidence            433  6777777777666 4443   23444555555555444332                     22   11278999


Q ss_pred             EEcCCCccccCC--CcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCC-cCccCCCCCcEEeCCC
Q 042537          435 LDLSNNILSGRL--PDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELP-SFFKSCSQLILMDLGK  511 (789)
Q Consensus       435 L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~  511 (789)
                      |++++|.+++..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|+   
T Consensus       352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~---  427 (570)
T 2z63_A          352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD---  427 (570)
T ss_dssp             EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE---
T ss_pred             EeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEe---
Confidence            999999988553  56677788888888888877754433 6666667777777766665443 2344444455554   


Q ss_pred             CcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccc-ccCCccccccccCcccCCCccccccC
Q 042537          512 NGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNIS-GIIPKCLNNFTGMAQKSSSNLAITSN  590 (789)
Q Consensus       512 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~  590 (789)
                                            +++|++.+..|..+.++++|++|++++|+++ +.+|..+..+++|             
T Consensus       428 ----------------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L-------------  472 (570)
T 2z63_A          428 ----------------------ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------  472 (570)
T ss_dssp             ----------------------CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------
T ss_pred             ----------------------CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC-------------
Confidence                                  4445444444555555566666666666655 3445444444444             


Q ss_pred             cccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccccc
Q 042537          591 YTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQ  670 (789)
Q Consensus       591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  670 (789)
                                                          +.|++++|++++..|..|..+++|++|+|++|++++.+|..|..
T Consensus       473 ------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  516 (570)
T 2z63_A          473 ------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR  516 (570)
T ss_dssp             ------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ------------------------------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence                                                67777777777777788888888999999999998877778888


Q ss_pred             CCCCCEEeCCCCcccccCch
Q 042537          671 LKSLDFLDLSQNQFVGGIPS  690 (789)
Q Consensus       671 l~~L~~L~Ls~N~l~~~~p~  690 (789)
                      +++|+.|++++|++++..|.
T Consensus       517 l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          517 LTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTCCEEECCSSCBCCCTTT
T ss_pred             ccCCcEEEecCCcccCCCcc
Confidence            99999999999999887664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3e-46  Score=420.49  Aligned_cols=466  Identities=20%  Similarity=0.184  Sum_probs=260.3

Q ss_pred             CEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEc
Q 042537           78 RHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNL  157 (789)
Q Consensus        78 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L  157 (789)
                      ++||+++|+++  .+|..+.  ++|++|++++|.+++..|.+|.++++|++|+|++|+++++  .|..|+++++|++|++
T Consensus         3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL--DISVFKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE--EGGGGTTCTTCCEEEC
T ss_pred             ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc--ChHHhhcccCCCEEec
Confidence            45677777766  3555444  6677777777777666666677777777777777776664  3466677777777777


Q ss_pred             CCCCCCCCccccccccccCCCCCCeEEccCCCCCC-CchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCC--cEEEC
Q 042537          158 EHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS-SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSL--RTLYL  234 (789)
Q Consensus       158 ~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L--~~L~L  234 (789)
                      ++|.++. +|. .   .+  ++|++|++++|.+++ .+|..+..+. +|++|++++|.+++   ..+..+++|  +.|++
T Consensus        77 s~N~l~~-lp~-~---~l--~~L~~L~L~~N~l~~~~~p~~~~~l~-~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           77 SHNKLVK-ISC-H---PT--VNLKHLDLSFNAFDALPICKEFGNMS-QLKFLGLSTTHLEK---SSVLPIAHLNISKVLL  145 (520)
T ss_dssp             CSSCCCE-EEC-C---CC--CCCSEEECCSSCCSSCCCCGGGGGCT-TCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred             CCCceee-cCc-c---cc--CCccEEeccCCccccccchhhhccCC-cceEEEecCcccch---hhccccccceeeEEEe
Confidence            7776663 221 1   22  455555555555543 2333333333 55555555555543   234444444  44444


Q ss_pred             CCCCccEEecCCCcC--cccchhhhhCCC-CCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCccc
Q 042537          235 GFNELEELFLGKNRL--NGTINQWLSRMY-KLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQ  311 (789)
Q Consensus       235 ~~n~L~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~  311 (789)
                      +          +|.+  .+..|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|.......        
T Consensus       146 ~----------~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------  207 (520)
T 2z7x_B          146 V----------LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS--------  207 (520)
T ss_dssp             E----------ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH--------
T ss_pred             e----------cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc--------
Confidence            4          3333  334444444433 222344555555544444444455555555555443100000        


Q ss_pred             ceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEc
Q 042537          312 LIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDI  391 (789)
Q Consensus       312 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l  391 (789)
                               .+.+.+| .+..+++|+.|++++|.+++..+..+...                                  
T Consensus       208 ---------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~----------------------------------  243 (520)
T 2z7x_B          208 ---------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL----------------------------------  243 (520)
T ss_dssp             ---------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH----------------------------------
T ss_pred             ---------eeecchh-hhccccchhhccccccccCHHHHHHHHHH----------------------------------
Confidence                     0111112 34445555555555554443222211110                                  


Q ss_pred             cCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCccc-----ccCCCCcEEEcCCCcC
Q 042537          392 SSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCW-----MQFDRLAVLSLANNFF  466 (789)
Q Consensus       392 ~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l  466 (789)
                                                      ..   .++|++|++++|++++.+|..+     .++++|+.+++++|.+
T Consensus       244 --------------------------------~~---~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~  288 (520)
T 2z7x_B          244 --------------------------------VW---HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF  288 (520)
T ss_dssp             --------------------------------HH---TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred             --------------------------------hh---hCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence                                            00   0234444444444444444444     4455555555555555


Q ss_pred             cccCC-cccccc---CcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccc-
Q 042537          467 SGKIP-KSMGFL---HSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHG-  541 (789)
Q Consensus       467 ~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-  541 (789)
                        .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|++++.+|..+. .+++|++|++++|++++ 
T Consensus       289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l  363 (520)
T 2z7x_B          289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKEL  363 (520)
T ss_dssp             --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBH
T ss_pred             --ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCcc
Confidence              222 223222   34566666665554221  124555666666666666654555444 46666666666666654 


Q ss_pred             -cCCCCccCCCcCceEeccCCcccccCCc-cccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccc
Q 042537          542 -NIPFQVCQLSYIQILDLSLNNISGIIPK-CLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEY  619 (789)
Q Consensus       542 -~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (789)
                       .+|..+..+++|++|++++|++++.+|. .+..+++                                           
T Consensus       364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~-------------------------------------------  400 (520)
T 2z7x_B          364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS-------------------------------------------  400 (520)
T ss_dssp             HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT-------------------------------------------
T ss_pred             ccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc-------------------------------------------
Confidence             3344566666777777777776653332 2333333                                           


Q ss_pred             ccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCC
Q 042537          620 RSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLS  699 (789)
Q Consensus       620 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  699 (789)
                            |+.|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|+.|+|++|+++...+..+..+++|+
T Consensus       401 ------L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  471 (520)
T 2z7x_B          401 ------LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ  471 (520)
T ss_dssp             ------CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ------CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence                  37778888877777666554  68899999999998 7888888899999999999999854434488899999


Q ss_pred             eEeccCCcccccCCC
Q 042537          700 VMNLSYNNLSGKIPL  714 (789)
Q Consensus       700 ~L~ls~N~l~~~~p~  714 (789)
                      +|++++|+++|.++.
T Consensus       472 ~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          472 KIWLHTNPWDCSCPR  486 (520)
T ss_dssp             EEECCSSCBCCCHHH
T ss_pred             EEECcCCCCcccCCc
Confidence            999999999988774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.4e-45  Score=415.15  Aligned_cols=487  Identities=19%  Similarity=0.183  Sum_probs=301.1

Q ss_pred             CEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEc
Q 042537           78 RHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNL  157 (789)
Q Consensus        78 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L  157 (789)
                      .+.|.++++++  .+|..+.  ++|++|++++|.+++..|.+|.++++|++|++++|+++++  .|..|+++++|++|++
T Consensus         8 ~~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            8 GVCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI--EGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             SEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEEC
T ss_pred             ceEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc--ChhhccccccCCEEEC
Confidence            34566666666  3454433  5666666666666655556666666666666666665553  1234444444444444


Q ss_pred             CCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCC
Q 042537          158 EHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFN  237 (789)
Q Consensus       158 ~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  237 (789)
                      ++|                                                     .+++..+..|+++++|++|++++|
T Consensus        82 s~n-----------------------------------------------------~l~~~~~~~~~~l~~L~~L~Ls~n  108 (549)
T 2z81_A           82 SDN-----------------------------------------------------HLSSLSSSWFGPLSSLKYLNLMGN  108 (549)
T ss_dssp             TTS-----------------------------------------------------CCCSCCHHHHTTCTTCCEEECTTC
T ss_pred             CCC-----------------------------------------------------ccCccCHHHhccCCCCcEEECCCC
Confidence            444                                                     333333344444444444444422


Q ss_pred             CccEEecCCCcCcc-cchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEe
Q 042537          238 ELEELFLGKNRLNG-TINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIIL  316 (789)
Q Consensus       238 ~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~  316 (789)
                      +          +++ ..|..++++++|++|++++|.+.+.++...|.++++|++|++++|.+++..+..+          
T Consensus       109 ~----------l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----------  168 (549)
T 2z81_A          109 P----------YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL----------  168 (549)
T ss_dssp             C----------CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT----------
T ss_pred             c----------ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh----------
Confidence            2          222 1233455555666666666654335554445556666666666555554333333          


Q ss_pred             ccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccC--CCCCCCCCCCCCEEEccCC
Q 042537          317 LGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKL--PNLSLRFDPFSSSIDISSN  394 (789)
Q Consensus       317 l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~~L~~L~l~~n  394 (789)
                                    ..+++|++|++++|.+. ..+.++....++|+.|++++|.+++..  |......++.++.+++++|
T Consensus       169 --------------~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n  233 (549)
T 2z81_A          169 --------------KSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS  233 (549)
T ss_dssp             --------------TTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred             --------------hccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence                          33333344444433332 222222222334444555544444210  1001122333444444444


Q ss_pred             cccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCC------CcccccCCCCcEEEcCCCcCcc
Q 042537          395 YFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRL------PDCWMQFDRLAVLSLANNFFSG  468 (789)
Q Consensus       395 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~  468 (789)
                      .+++..+..                 .... ....++|+.+++++|.+.+..      ...+..+.+|+.|++.++.+..
T Consensus       234 ~l~~~~~~~-----------------l~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~  295 (549)
T 2z81_A          234 VLTDESFNE-----------------LLKL-LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ  295 (549)
T ss_dssp             EEEHHHHHH-----------------HHGG-GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSC
T ss_pred             ccchhHHHH-----------------HHHH-hhhhccccccccccccccccccccccchhhhhhhcccccccccccccch
Confidence            333221100                 0000 011256777777777766431      2345678899999999988763


Q ss_pred             c-----CCccccccCcccEEEccCCeeeeeCCcCc-cCCCCCcEEeCCCCcccccCchh--hhhcCCCCcEEEcCCCccc
Q 042537          469 K-----IPKSMGFLHSIQTLSLYNNSLIGELPSFF-KSCSQLILMDLGKNGLSGEIPTW--IGEGLPKLVVLSLKSNKFH  540 (789)
Q Consensus       469 ~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~p~~--~~~~l~~L~~L~L~~n~l~  540 (789)
                      .     .+..+...++|++|++++|.+. .+|..+ ..+++|++|++++|++.+.+|..  ....+++|++|++++|+++
T Consensus       296 ~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  374 (549)
T 2z81_A          296 FYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR  374 (549)
T ss_dssp             GGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC
T ss_pred             hhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc
Confidence            2     1222344678999999999997 556554 67999999999999999776543  1236899999999999998


Q ss_pred             ccCC--CCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccc
Q 042537          541 GNIP--FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHE  618 (789)
Q Consensus       541 ~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  618 (789)
                      +..+  ..+..+++|++|++++|+++ .+|..+..+++|                                         
T Consensus       375 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-----------------------------------------  412 (549)
T 2z81_A          375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-----------------------------------------  412 (549)
T ss_dssp             CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-----------------------------------------
T ss_pred             ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-----------------------------------------
Confidence            6532  45788999999999999998 456555554444                                         


Q ss_pred             cccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCC
Q 042537          619 YRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRL  698 (789)
Q Consensus       619 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  698 (789)
                              +.|++++|+++ .+|..+.  ++|++|+|++|++++.+    ..+++|++|+|++|+++ .+|. ...+++|
T Consensus       413 --------~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L  475 (549)
T 2z81_A          413 --------RFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVL  475 (549)
T ss_dssp             --------CEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTC
T ss_pred             --------cEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccC
Confidence                    89999999998 4554442  68999999999999643    57899999999999999 5665 4679999


Q ss_pred             CeEeccCCcccccCCCC-CccccccccccCCCCCCCCCC
Q 042537          699 SVMNLSYNNLSGKIPLG-TQLQSFNASVYAGNPELCGLP  736 (789)
Q Consensus       699 ~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  736 (789)
                      ++|++++|++++.+|.. ..+..+....+.+||+.|+|+
T Consensus       476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            99999999999887753 456677778899999999887

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.1e-43  Score=410.70  Aligned_cols=531  Identities=18%  Similarity=0.183  Sum_probs=367.0

Q ss_pred             EeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCC
Q 042537           80 LDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEH  159 (789)
Q Consensus        80 L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~  159 (789)
                      .+.++.+++  .+|..+.  +++++|||++|+|+++.|.+|.++++|++|+|++|+|++++  +.+|.++++|++|+|++
T Consensus        36 ~~c~~~~l~--~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~--~~~f~~L~~L~~L~Ls~  109 (635)
T 4g8a_A           36 YQCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTG  109 (635)
T ss_dssp             EECTTSCCS--SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTT
T ss_pred             EECCCCCcC--ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC--hhHhcCCCCCCEEEccC
Confidence            344555666  4676553  58999999999999888889999999999999999999863  36799999999999999


Q ss_pred             CCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCc
Q 042537          160 CHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNEL  239 (789)
Q Consensus       160 n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L  239 (789)
                      |++++..+.  .+.++  +                         +|++|++++|+++++.+..|+++++|++|++++|.+
T Consensus       110 N~l~~l~~~--~f~~L--~-------------------------~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          110 NPIQSLALG--AFSGL--S-------------------------SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             CCCCEECGG--GGTTC--T-------------------------TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             CcCCCCCHH--HhcCC--C-------------------------CCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence            988765542  22222  3                         566666666666655555666666666666663333


Q ss_pred             cEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCC----cEEEccCCcccccccCCCCCcccceeE
Q 042537          240 EELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNL----KALHLDDNSFTLKFSHDWIPPFQLIII  315 (789)
Q Consensus       240 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~L~~n~i~~~~~~~~~~~~~L~~L  315 (789)
                      +.+         ..|..++.+++|++|++++|++++ ++...|..+.++    ..++++.|.+....+..+ ....+..+
T Consensus       161 ~~~---------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l  229 (635)
T 4g8a_A          161 QSF---------KLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKL  229 (635)
T ss_dssp             CCC---------CCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEE
T ss_pred             ccC---------CCchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhh
Confidence            221         235556666777777777777763 333345444333    356666666654333222 22344455


Q ss_pred             eccCccCCC-CCchhccCCCCccEEEccCCcCCC------CcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCE
Q 042537          316 LLGSCQMGP-HFPKWLQTQNQIEVLDISDAGISD------TVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSS  388 (789)
Q Consensus       316 ~l~~~~~~~-~~~~~l~~l~~L~~L~ls~n~i~~------~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~  388 (789)
                      .+.++.... ..+..+..+..++...+..+....      .....+.. ...+....+..+...                
T Consensus       230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~l~~~~l~~~~~~----------------  292 (635)
T 4g8a_A          230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG-LCNLTIEEFRLAYLD----------------  292 (635)
T ss_dssp             EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG-GGGSEEEEEEEECCC----------------
T ss_pred             hhhcccccccccchhhcCCccccccccccccccccccccccccccccc-ccchhhhhhhhhhhc----------------
Confidence            555543321 223445566666655544322211      11111111 112222222221111                


Q ss_pred             EEccCCcccccCC--CCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcC
Q 042537          389 IDISSNYFEGLIP--PLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFF  466 (789)
Q Consensus       389 L~l~~n~l~~~~~--~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  466 (789)
                           ....+...  ....+++.+++.++.+....+....   ..++.|++++|.+....+   ..+..|+.+++..|.+
T Consensus       293 -----~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~  361 (635)
T 4g8a_A          293 -----YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYN---FGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG  361 (635)
T ss_dssp             -----SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSC---CCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS
T ss_pred             -----ccccchhhhhhhhcccccccccccccccccccccc---hhhhhhhcccccccCcCc---ccchhhhhcccccccC
Confidence                 00011111  1145677777777766654443222   679999999998875544   3467788999999987


Q ss_pred             cccCCccccccCcccEEEccCCeeee--eCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCC
Q 042537          467 SGKIPKSMGFLHSIQTLSLYNNSLIG--ELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIP  544 (789)
Q Consensus       467 ~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~  544 (789)
                      ....  ....+++|+.+++++|.+..  ..+..+..+.+|+.+++..|.+. .++..+. .+++|+.++++.|......+
T Consensus       362 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~~~~~  437 (635)
T 4g8a_A          362 GNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSE  437 (635)
T ss_dssp             CCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCT-TCTTCCEEECTTSEEESTTS
T ss_pred             CCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccccc-ccccccchhhhhcccccccc
Confidence            7433  34568899999999998853  45666778889999999999887 4555444 68999999999988776554


Q ss_pred             -CCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccccccc
Q 042537          545 -FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTL  623 (789)
Q Consensus       545 -~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  623 (789)
                       ..+..+++++.+++++|.+.+..+..+..++.+                                              
T Consensus       438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L----------------------------------------------  471 (635)
T 4g8a_A          438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL----------------------------------------------  471 (635)
T ss_dssp             SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC----------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccchhh----------------------------------------------
Confidence             457789999999999999998887777666555                                              


Q ss_pred             CceeEEEcccCccc-cccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEe
Q 042537          624 GLVKILDFSMNKLS-GTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMN  702 (789)
Q Consensus       624 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  702 (789)
                         +.|++++|++. +.+|..|..+++|++|+|++|++++.+|..|+++++|++|+|++|+|++..|..|..+++|++||
T Consensus       472 ---~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  548 (635)
T 4g8a_A          472 ---EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  548 (635)
T ss_dssp             ---CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred             ---hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence               89999999854 46788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccCCCCC-c-cccccccccCCCCCCCCCCC
Q 042537          703 LSYNNLSGKIPLGT-Q-LQSFNASVYAGNPELCGLPL  737 (789)
Q Consensus       703 ls~N~l~~~~p~~~-~-~~~~~~~~~~~n~~lc~~~l  737 (789)
                      +++|++++..|..- . ..++....+.||||.|+|.+
T Consensus       549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            99999999888642 2 24567778999999999874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.5e-45  Score=408.25  Aligned_cols=462  Identities=18%  Similarity=0.179  Sum_probs=301.6

Q ss_pred             CEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEE
Q 042537          153 RTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTL  232 (789)
Q Consensus       153 ~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  232 (789)
                      ++|++++|.++.++.   .+.    ++|++|++++|.+++..+..+..+. +|++|++++|++++..|..|.++++|++|
T Consensus         3 ~~l~ls~n~l~~ip~---~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPK---DLS----QKTTILNISQNYISELWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCCSSCCC---SCC----TTCSEEECCSSCCCCCCHHHHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred             ceEecCCCCcccccc---ccc----ccccEEECCCCcccccChhhccccc-cccEEecCCCccCCcChHHhhcccCCCEE
Confidence            456777776664322   111    4555555555555543333333332 55555555555555555555555555555


Q ss_pred             ECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCC-ccChhhhhcCCCCcEEEccCCcccccccCCCCCccc
Q 042537          233 YLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTG-VVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQ  311 (789)
Q Consensus       233 ~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~  311 (789)
                      ++++|+++.+           |..  .+++|++|++++|.+++ .+|. .|+++++|++|++++|++..           
T Consensus        75 ~Ls~N~l~~l-----------p~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~-----------  129 (520)
T 2z7x_B           75 DLSHNKLVKI-----------SCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK-----------  129 (520)
T ss_dssp             ECCSSCCCEE-----------ECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG-----------
T ss_pred             ecCCCceeec-----------Ccc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch-----------
Confidence            5554333322           111  34555555555555543 1222 35555555555555555442           


Q ss_pred             ceeEeccCccCCCCCchhccCCCCc--cEEEccCCcC--CCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCC
Q 042537          312 LIIILLGSCQMGPHFPKWLQTQNQI--EVLDISDAGI--SDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS  387 (789)
Q Consensus       312 L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~ls~n~i--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~  387 (789)
                                      ..+..+++|  ++|++++|.+  .+..|..+..+......+++++|.+.+.++...+..++.|+
T Consensus       130 ----------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~  193 (520)
T 2z7x_B          130 ----------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE  193 (520)
T ss_dssp             ----------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred             ----------------hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence                            223344444  6666666665  44555444332222334455556555555554444555455


Q ss_pred             EEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccc---cCCCCcEEEcCCC
Q 042537          388 SIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWM---QFDRLAVLSLANN  464 (789)
Q Consensus       388 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n  464 (789)
                      .+++++|.-....              ..+.+.++...  ..++|+.|++++|.+++..+..+.   ..++|++|++++|
T Consensus       194 ~L~l~~n~~~~~~--------------~~~~~~~~~l~--~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n  257 (520)
T 2z7x_B          194 LSNIKCVLEDNKC--------------SYFLSILAKLQ--TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV  257 (520)
T ss_dssp             ECCEEECCSTTTT--------------HHHHHHHHGGG--GCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred             ecccccccccccc--------------ceeecchhhhc--cccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence            5554444300000              00222233222  227888888888887754322221   2468999999999


Q ss_pred             cCcccCCccc-----cccCcccEEEccCCeeeeeCC-cCccCC---CCCcEEeCCCCcccccCchhhhhcCCCCcEEEcC
Q 042537          465 FFSGKIPKSM-----GFLHSIQTLSLYNNSLIGELP-SFFKSC---SQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLK  535 (789)
Q Consensus       465 ~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~  535 (789)
                      ++++.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+. .++.  ...+++|++|+++
T Consensus       258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~Ls  332 (520)
T 2z7x_B          258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC--PSKISPFLHLDFS  332 (520)
T ss_dssp             EEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC--CSSCCCCCEEECC
T ss_pred             cccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc-cccc--hhhCCcccEEEeE
Confidence            9998888888     8899999999999998  444 444443   67999999999987 4432  1368999999999


Q ss_pred             CCcccccCCCCccCCCcCceEeccCCcccc--cCCccccccccCcccCCCccccccCcccccccccccccccceeEEEee
Q 042537          536 SNKFHGNIPFQVCQLSYIQILDLSLNNISG--IIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWK  613 (789)
Q Consensus       536 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  613 (789)
                      +|++++..|..+..+++|++|++++|++++  ..|..+..+++|                                    
T Consensus       333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L------------------------------------  376 (520)
T 2z7x_B          333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL------------------------------------  376 (520)
T ss_dssp             SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC------------------------------------
T ss_pred             CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC------------------------------------
Confidence            999998889999999999999999999986  334445554444                                    


Q ss_pred             ccccccccccCceeEEEcccCccccccchh-hhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhh
Q 042537          614 GSQHEYRSTLGLVKILDFSMNKLSGTIPEE-IMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSL  692 (789)
Q Consensus       614 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  692 (789)
                                   +.|++++|++++.+|.. +..+++|++|++++|++++.+|..+.  ++|+.|++++|+++ .+|..+
T Consensus       377 -------------~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~  440 (520)
T 2z7x_B          377 -------------QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV  440 (520)
T ss_dssp             -------------CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG
T ss_pred             -------------CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh
Confidence                         99999999999856654 88899999999999999988887765  79999999999999 778878


Q ss_pred             hcCCCCCeEeccCCcccccCCCC--CccccccccccCCCCCCCCCCC
Q 042537          693 CQLSRLSVMNLSYNNLSGKIPLG--TQLQSFNASVYAGNPELCGLPL  737 (789)
Q Consensus       693 ~~l~~L~~L~ls~N~l~~~~p~~--~~~~~~~~~~~~~n~~lc~~~l  737 (789)
                      ..+++|++|++++|+++ .+|..  ..+..+....+.+||+.|+|++
T Consensus       441 ~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          441 VKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             GGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             hcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            89999999999999999 56654  3455677778999999998764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.2e-44  Score=416.69  Aligned_cols=448  Identities=19%  Similarity=0.207  Sum_probs=318.1

Q ss_pred             CCCCEEeCCCCCCCCCCCcccccCCCCCCEEec-CCCcCCCCCCccccCC----CCCc--EEe---------c-cCccCC
Q 042537           75 YHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSL-SSAEFEGPIPSQLGNL----SRLK--YLD---------L-SYINLN  137 (789)
Q Consensus        75 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L-s~n~i~~~~p~~~~~l----~~L~--~L~---------L-s~n~l~  137 (789)
                      .+++.|+|+++.+.+. +|..+++|++|++|+| ++|.+.|..|-.....    ...+  .+.         . ....+.
T Consensus       323 ~~V~~L~Ls~~~L~G~-ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEE-ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCc-CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            5789999999999886 8999999999999999 8888776533221111    0000  000         0 000011


Q ss_pred             CCcchHHhh-----------CCCCCCCEEEcCC--CCCCCCccccccccccCCCCCCeEEccCCCCCC------------
Q 042537          138 KSRDWLRII-----------DKLPSLRTLNLEH--CHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS------------  192 (789)
Q Consensus       138 ~~~~~~~~l-----------~~l~~L~~L~L~~--n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~------------  192 (789)
                      ..  ++..+           .....++.+.+..  |.+++ +|  ..+.++  ++|+.|++++|.+++            
T Consensus       402 ~l--~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP--~~l~~L--~~L~~L~Ls~N~Lsg~~i~~~~~~~s~  474 (876)
T 4ecn_A          402 DL--LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS--KAIQRL--TKLQIIYFANSPFTYDNIAVDWEDANS  474 (876)
T ss_dssp             HH--HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC--GGGGGC--TTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred             HH--HHHHhhhCccccccccccccchhhceeccccCcccc-hh--HHHhcC--CCCCEEECcCCcCCCCccccccccccc
Confidence            00  11111           1223344444443  77777 66  346666  999999999999998            


Q ss_pred             -----CchhHHH-hhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCc-Ccc-cchhhhhCCC---
Q 042537          193 -----SIYPWLF-NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNR-LNG-TINQWLSRMY---  261 (789)
Q Consensus       193 -----~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~-l~~-~~~~~l~~l~---  261 (789)
                           .+|..+. ...++|++|+|++|.+.+.+|..|.++++|+.|+++          +|+ +++ .+|..+++++   
T Consensus       475 n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls----------~N~~lsg~~iP~~i~~L~~~~  544 (876)
T 4ecn_A          475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA----------CNRGISAAQLKADWTRLADDE  544 (876)
T ss_dssp             HHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT----------TCTTSCHHHHHHHHHHHHHCT
T ss_pred             ccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc----------CCCCcccccchHHHHhhhhcc
Confidence                 3888874 334499999999999999999999999999999999          676 777 7887776655   


Q ss_pred             ----CCCEEEccCCCCCCccCh-hhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCc
Q 042537          262 ----KLDALSLSGNSLTGVVTE-SVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQI  336 (789)
Q Consensus       262 ----~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  336 (789)
                          +|++|+|++|.+. .+|. ..|.++++|++|++++|++.                         .+| .+..+++|
T Consensus       545 ~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-------------------------~lp-~~~~L~~L  597 (876)
T 4ecn_A          545 DTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-------------------------HLE-AFGTNVKL  597 (876)
T ss_dssp             TTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-------------------------BCC-CCCTTSEE
T ss_pred             cccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-------------------------cch-hhcCCCcc
Confidence                9999999999999 7776 46999999999999999887                         345 57788999


Q ss_pred             cEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCc
Q 042537          337 EVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNK  416 (789)
Q Consensus       337 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~  416 (789)
                      +.|++++|.+. .+|..+..+. +                                                        
T Consensus       598 ~~L~Ls~N~l~-~lp~~l~~l~-~--------------------------------------------------------  619 (876)
T 4ecn_A          598 TDLKLDYNQIE-EIPEDFCAFT-D--------------------------------------------------------  619 (876)
T ss_dssp             SEEECCSSCCS-CCCTTSCEEC-T--------------------------------------------------------
T ss_pred             eEEECcCCccc-cchHHHhhcc-c--------------------------------------------------------
Confidence            99999999987 4444332221 1                                                        


Q ss_pred             CccccchhcccCCCCCCEEEcCCCccccCCCcccccCCC--CcEEEcCCCcCcccCCcc---cc--ccCcccEEEccCCe
Q 042537          417 FSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDR--LAVLSLANNFFSGKIPKS---MG--FLHSIQTLSLYNNS  489 (789)
Q Consensus       417 i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~---~~--~l~~L~~L~L~~n~  489 (789)
                                    +|+.|++++|.++ .+|..+..+..  |+.|++++|++.+.+|..   +.  .+++|+.|++++|.
T Consensus       620 --------------~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~  684 (876)
T 4ecn_A          620 --------------QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE  684 (876)
T ss_dssp             --------------TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred             --------------cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence                          1333333333333 33333333322  444444444444333321   11  23467777777777


Q ss_pred             eeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcC-------CCCcEEEcCCCcccccCCCCcc--CCCcCceEeccC
Q 042537          490 LIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGL-------PKLVVLSLKSNKFHGNIPFQVC--QLSYIQILDLSL  560 (789)
Q Consensus       490 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~  560 (789)
                      ++...+..+..+++|+.|++++|+++ .+|..++...       ++|+.|+|++|+++ .+|..+.  .+++|+.|+|++
T Consensus       685 L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~  762 (876)
T 4ecn_A          685 IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY  762 (876)
T ss_dssp             CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCS
T ss_pred             CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCC
Confidence            77433333456777888888888877 7777665332       38999999999999 6788876  899999999999


Q ss_pred             CcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCcccccc
Q 042537          561 NNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTI  640 (789)
Q Consensus       561 N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  640 (789)
                      |++++ +|..+..+++|                                                 +.|+|++|+     
T Consensus       763 N~L~~-lp~~l~~L~~L-------------------------------------------------~~L~Ls~N~-----  787 (876)
T 4ecn_A          763 NCFSS-FPTQPLNSSQL-------------------------------------------------KAFGIRHQR-----  787 (876)
T ss_dssp             SCCSS-CCCGGGGCTTC-------------------------------------------------CEEECCCCB-----
T ss_pred             CCCCc-cchhhhcCCCC-------------------------------------------------CEEECCCCC-----
Confidence            99886 56666655555                                                 788888886     


Q ss_pred             chhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCC
Q 042537          641 PEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP  713 (789)
Q Consensus       641 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  713 (789)
                                   ++++|++.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.||+++|++...-+
T Consensus       788 -------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          788 -------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             -------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred             -------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence                         6788999999999999999999999999999 68888765  699999999999875433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.9e-44  Score=407.95  Aligned_cols=373  Identities=18%  Similarity=0.221  Sum_probs=280.3

Q ss_pred             CCCCCCccChhhhhcCCCCcEEEccCCccccc-----------------ccCCCC--CcccceeEeccCccCCCCCchhc
Q 042537          270 GNSLTGVVTESVFSELSNLKALHLDDNSFTLK-----------------FSHDWI--PPFQLIIILLGSCQMGPHFPKWL  330 (789)
Q Consensus       270 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l  330 (789)
                      .|++++ +|. .++++++|++|++++|.+++.                 .+..+.  .+.+|++|++++|.+.+.+|..+
T Consensus       192 ~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          192 SNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             SCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred             cCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence            466665 666 477777788888887777764                 566666  67777777777777777777777


Q ss_pred             cCCCCccEEEccCCc-CCC-CcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCc
Q 042537          331 QTQNQIEVLDISDAG-ISD-TVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNAS  408 (789)
Q Consensus       331 ~~l~~L~~L~ls~n~-i~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~  408 (789)
                      .++++|++|++++|+ +++ .+|..+..+.                    .+..+++|++|++++|              
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~--------------------~~~~l~~L~~L~L~~n--------------  315 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALA--------------------DAPVGEKIQIIYIGYN--------------  315 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHH--------------------HSGGGGTCCEEECCSS--------------
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhh--------------------ccccCCCCCEEECCCC--------------
Confidence            777778888887777 766 6666655431                    0011122333333333              


Q ss_pred             EEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCc-ccEEEccC
Q 042537          409 VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHS-IQTLSLYN  487 (789)
Q Consensus       409 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~  487 (789)
                             +++..+.......+++|++|++++|+++|.+| .|..+++|+.|++++|+++ .+|..+..+++ |++|++++
T Consensus       316 -------~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          316 -------NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             -------CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred             -------cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence                   33211110011122789999999999998888 8999999999999999999 78888999999 99999999


Q ss_pred             CeeeeeCCcCccCCC--CCcEEeCCCCcccccCchhhhh------cCCCCcEEEcCCCcccccCCCCccCCCcCceEecc
Q 042537          488 NSLIGELPSFFKSCS--QLILMDLGKNGLSGEIPTWIGE------GLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLS  559 (789)
Q Consensus       488 n~l~~~~~~~~~~l~--~L~~L~ls~n~l~~~~p~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  559 (789)
                      |.++ .+|..+..++  +|++|++++|.+.+.+|..+..      .+++|++|++++|++++..+..+..+++|++|+++
T Consensus       387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM  465 (636)
T ss_dssp             SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred             CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence            9998 6787777655  8999999999999877765531      36789999999999984433345568999999999


Q ss_pred             CCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccc
Q 042537          560 LNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGT  639 (789)
Q Consensus       560 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  639 (789)
                      +|+++...+..+.....                                          ....++.|+.|++++|+++ .
T Consensus       466 ~N~l~~i~~~~~~~~~~------------------------------------------~~~~l~~L~~L~Ls~N~l~-~  502 (636)
T 4eco_A          466 GNMLTEIPKNSLKDENE------------------------------------------NFKNTYLLTSIDLRFNKLT-K  502 (636)
T ss_dssp             SSCCSBCCSSSSEETTE------------------------------------------ECTTGGGCCEEECCSSCCC-B
T ss_pred             CCCCCCcCHHHhccccc------------------------------------------cccccCCccEEECcCCcCC-c
Confidence            99998433333322110                                          0012345699999999999 7


Q ss_pred             cchhhh--ccccCcEEEccCCcceeecCcccccCCCCCEEeC------CCCcccccCchhhhcCCCCCeEeccCCccccc
Q 042537          640 IPEEIM--DLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDL------SQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGK  711 (789)
Q Consensus       640 ~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  711 (789)
                      +|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|      ++|++.+.+|..+..+++|++|++++|++ +.
T Consensus       503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~  580 (636)
T 4eco_A          503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK  580 (636)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred             cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence            888887  99999999999999997 8999999999999999      56889999999999999999999999999 78


Q ss_pred             CCCCCccccccccccCCCCCCCC
Q 042537          712 IPLGTQLQSFNASVYAGNPELCG  734 (789)
Q Consensus       712 ~p~~~~~~~~~~~~~~~n~~lc~  734 (789)
                      +|... ...+....+.+||..|-
T Consensus       581 ip~~~-~~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          581 VNEKI-TPNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCSCC-CTTCCEEECCSCTTCEE
T ss_pred             cCHhH-hCcCCEEECcCCCCccc
Confidence            99763 36677778899998873

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.1e-43  Score=397.28  Aligned_cols=459  Identities=20%  Similarity=0.198  Sum_probs=310.3

Q ss_pred             CCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCC
Q 042537          149 LPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVS  228 (789)
Q Consensus       149 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~  228 (789)
                      +...+++++++|.+++++.   ...    ++|++|++++|.+++..+..+..+. +|++|++++|.+++..|.+|.++++
T Consensus        30 ~~~~~~l~ls~~~L~~ip~---~~~----~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPK---DLP----PRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             ---CCEEECTTSCCCSCCT---TSC----TTCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             cCCCcEEEcCCCCCccCCC---CCC----CCcCEEECCCCCccccChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCC
Confidence            3344788888888776332   111    6777777777777654444444443 7777777777777777777777777


Q ss_pred             CcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCC
Q 042537          229 LRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIP  308 (789)
Q Consensus       229 L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  308 (789)
                      |++|++++|+++.+           |..  .+++|++|++++|++.+.-.+..|.++++|++|++++|++...   .+..
T Consensus       102 L~~L~Ls~N~l~~l-----------p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~  165 (562)
T 3a79_B          102 LEYLDVSHNRLQNI-----------SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLP  165 (562)
T ss_dssp             CCEEECTTSCCCEE-----------CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGG
T ss_pred             CCEEECCCCcCCcc-----------Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhh
Confidence            77777775555433           222  5667777777777776321113577777777777777776542   2222


Q ss_pred             cccc--eeEeccCccC--CCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCC
Q 042537          309 PFQL--IIILLGSCQM--GPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDP  384 (789)
Q Consensus       309 ~~~L--~~L~l~~~~~--~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  384 (789)
                      +.+|  +.|++++|.+  .+..|..+..+.                        .....+++++|.+.+.++...+..++
T Consensus       166 l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~------------------------~~~l~l~l~~n~~~~~~~~~~~~~l~  221 (562)
T 3a79_B          166 VAHLHLSCILLDLVSYHIKGGETESLQIPN------------------------TTVLHLVFHPNSLFSVQVNMSVNALG  221 (562)
T ss_dssp             GTTSCEEEEEEEESSCCCCSSSCCEEEECC------------------------EEEEEEEECSSSCCCCCCEEEESSEE
T ss_pred             hhhceeeEEEeecccccccccCcccccccC------------------------cceEEEEecCccchhhhhhhcccccc
Confidence            2333  5555555555  444444444332                        11113344444444444443444444


Q ss_pred             CCCEEEccCCc-----ccccCC--CCCCCCcEEEcCCCcCccc-----cchhcccCCCCCCEEEcCCCccccCCCccc--
Q 042537          385 FSSSIDISSNY-----FEGLIP--PLPSNASVLNLSRNKFSES-----ISFLCSINGHKLEFLDLSNNILSGRLPDCW--  450 (789)
Q Consensus       385 ~L~~L~l~~n~-----l~~~~~--~~~~~L~~L~l~~n~i~~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--  450 (789)
                      .|+.+++++|.     +.+.++  ...+.++.+++.++.+.+.     .+...   .++|++|++++|.+++.+|..+  
T Consensus       222 ~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~  298 (562)
T 3a79_B          222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFT  298 (562)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCC
T ss_pred             eEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh---cccccEEEEeccEeeccccchhhh
Confidence            55555555552     111111  0134556666665555432     22221   1689999999999998888877  


Q ss_pred             ---ccCCCCcEEEcCCCcCcccCC-ccccc---cCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhh
Q 042537          451 ---MQFDRLAVLSLANNFFSGKIP-KSMGF---LHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIG  523 (789)
Q Consensus       451 ---~~l~~L~~L~L~~n~l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~  523 (789)
                         .+++.|+.+++..+.+  .+| ..+..   ..+|++|++++|.+....  ....+++|++|++++|++++.+|..+.
T Consensus       299 ~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~  374 (562)
T 3a79_B          299 YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS  374 (562)
T ss_dssp             CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred             cccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc
Confidence               7777777788877777  344 22222   257999999999986332  236889999999999999977887776


Q ss_pred             hcCCCCcEEEcCCCccccc--CCCCccCCCcCceEeccCCcccccCCc-cccccccCcccCCCccccccCcccccccccc
Q 042537          524 EGLPKLVVLSLKSNKFHGN--IPFQVCQLSYIQILDLSLNNISGIIPK-CLNNFTGMAQKSSSNLAITSNYTFERQGIEF  600 (789)
Q Consensus       524 ~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  600 (789)
                       .+++|++|++++|++++.  .|..+.++++|++|++++|++++.+|. .+..+++                        
T Consensus       375 -~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~------------------------  429 (562)
T 3a79_B          375 -TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES------------------------  429 (562)
T ss_dssp             -SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT------------------------
T ss_pred             -ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc------------------------
Confidence             799999999999999863  346788999999999999999985553 3544444                        


Q ss_pred             cccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCC
Q 042537          601 LESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLS  680 (789)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  680 (789)
                                               |+.|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|+.|+|+
T Consensus       430 -------------------------L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~  481 (562)
T 3a79_B          430 -------------------------ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA  481 (562)
T ss_dssp             -------------------------CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECC
T ss_pred             -------------------------CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECC
Confidence                                     49999999999988776654  78999999999999 788888899999999999


Q ss_pred             CCcccccCchhhhcCCCCCeEeccCCcccccCCCC
Q 042537          681 QNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG  715 (789)
Q Consensus       681 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  715 (789)
                      +|++++..+..+..+++|++|++++|++.|.+|..
T Consensus       482 ~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          482 SNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             SSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             CCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence            99999544444999999999999999999988854

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1e-41  Score=386.54  Aligned_cols=465  Identities=20%  Similarity=0.213  Sum_probs=259.2

Q ss_pred             EEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEE
Q 042537           50 IVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYL  129 (789)
Q Consensus        50 ~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L  129 (789)
                      +++|+++    +.+.+ +|..+.  ++|++|++++|.+++. .+..|.++++|++|+|++|++++..|++|.++++|++|
T Consensus        34 ~~l~ls~----~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           34 SMVDYSN----RNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             CEEECTT----SCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             cEEEcCC----CCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            6677777    55553 565443  6777788887777754 55677777777777777777777667777777777777


Q ss_pred             eccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCc-cccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCC--c
Q 042537          130 DLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPII-PSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKL--V  206 (789)
Q Consensus       130 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L--~  206 (789)
                      +|++|+++.+   |..  .+++|++|++++|.+.+.. |  ..+.++  ++|++|++++|.+++.....   + ++|  +
T Consensus       106 ~Ls~N~l~~l---p~~--~l~~L~~L~Ls~N~l~~l~~p--~~~~~l--~~L~~L~L~~n~l~~~~~~~---l-~~L~L~  172 (562)
T 3a79_B          106 DVSHNRLQNI---SCC--PMASLRHLDLSFNDFDVLPVC--KEFGNL--TKLTFLGLSAAKFRQLDLLP---V-AHLHLS  172 (562)
T ss_dssp             ECTTSCCCEE---CSC--CCTTCSEEECCSSCCSBCCCC--GGGGGC--TTCCEEEEECSBCCTTTTGG---G-TTSCEE
T ss_pred             ECCCCcCCcc---Ccc--ccccCCEEECCCCCccccCch--Hhhccc--CcccEEecCCCccccCchhh---h-hhceee
Confidence            7777777753   333  6777777777777765532 2  223333  45555555555544311111   1 122  4


Q ss_pred             EEEccCCCC--cccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhc
Q 042537          207 VLDLDSNLL--QGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSE  284 (789)
Q Consensus       207 ~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  284 (789)
                      +|++++|.+  ++..|..|..+.. +                               .+ .+++++|.+.+.++...+..
T Consensus       173 ~L~L~~n~l~~~~~~~~~l~~l~~-~-------------------------------~l-~l~l~~n~~~~~~~~~~~~~  219 (562)
T 3a79_B          173 CILLDLVSYHIKGGETESLQIPNT-T-------------------------------VL-HLVFHPNSLFSVQVNMSVNA  219 (562)
T ss_dssp             EEEEEESSCCCCSSSCCEEEECCE-E-------------------------------EE-EEEECSSSCCCCCCEEEESS
T ss_pred             EEEeecccccccccCcccccccCc-c-------------------------------eE-EEEecCccchhhhhhhcccc
Confidence            444444444  3333333333221 1                               11 33444454444444434444


Q ss_pred             CCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhh--hccCCC
Q 042537          285 LSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWD--LSHTIA  362 (789)
Q Consensus       285 l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~--~~~~L~  362 (789)
                      +++|+.+++++|+.....                   + ......+..+++|+.++++++.+.+.....+..  ..++|+
T Consensus       220 l~~L~~L~l~~n~~~~~~-------------------l-~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~  279 (562)
T 3a79_B          220 LGHLQLSNIKLNDENCQR-------------------L-MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE  279 (562)
T ss_dssp             EEEEEEEEEECCSTTHHH-------------------H-HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred             cceEEEecccccccccch-------------------H-HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence            555555555554311000                   0 011223445555666665555544322111111  112566


Q ss_pred             eeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCcc
Q 042537          363 DFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNIL  442 (789)
Q Consensus       363 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l  442 (789)
                      +|++++|.++|.+|...+...                    ..+++                      .|+.++++.+.+
T Consensus       280 ~L~l~~n~l~~~ip~~~~~~~--------------------~~~L~----------------------~L~~~~~~~~~~  317 (562)
T 3a79_B          280 YLNIYNLTITERIDREEFTYS--------------------ETALK----------------------SLMIEHVKNQVF  317 (562)
T ss_dssp             EEEEEEEEECSCCCCCCCCCC--------------------SCSCC----------------------EEEEEEEEECCC
T ss_pred             EEEEeccEeeccccchhhhcc--------------------cccch----------------------heehhhccccee
Confidence            666666666666655211100                    01121                      122222222222


Q ss_pred             ccCCC-ccccc---CCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccC
Q 042537          443 SGRLP-DCWMQ---FDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEI  518 (789)
Q Consensus       443 ~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~  518 (789)
                        .+| ..+..   ..+|+.|++++|.+....  ....+++|++|++++|++++..|..+.++++|++|++++|+++ .+
T Consensus       318 --~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~  392 (562)
T 3a79_B          318 --LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NF  392 (562)
T ss_dssp             --SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BT
T ss_pred             --ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-Cc
Confidence              111 11111   133445555555443211  1134555666666666666555556666666666666666665 33


Q ss_pred             c---hhhhhcCCCCcEEEcCCCcccccCCC-CccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccc
Q 042537          519 P---TWIGEGLPKLVVLSLKSNKFHGNIPF-QVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFE  594 (789)
Q Consensus       519 p---~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~  594 (789)
                      +   ..+ ..+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+.                      
T Consensus       393 ~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~----------------------  449 (562)
T 3a79_B          393 FKVALMT-KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP----------------------  449 (562)
T ss_dssp             THHHHTT-TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC----------------------
T ss_pred             ccchhhh-cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc----------------------
Confidence            2   222 2566777777777777663333 466677788888888877655444332                      


Q ss_pred             cccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcc-cccCCC
Q 042537          595 RQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPK-IDQLKS  673 (789)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~  673 (789)
                                                   +.|+.|++++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++
T Consensus       450 -----------------------------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~  498 (562)
T 3a79_B          450 -----------------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTS  498 (562)
T ss_dssp             -----------------------------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTT
T ss_pred             -----------------------------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCC
Confidence                                         23488999999988 67777779999999999999999 56665 899999


Q ss_pred             CCEEeCCCCcccccCc
Q 042537          674 LDFLDLSQNQFVGGIP  689 (789)
Q Consensus       674 L~~L~Ls~N~l~~~~p  689 (789)
                      |+.|++++|++.+..|
T Consensus       499 L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          499 LQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCCEECCSCCBCCCHH
T ss_pred             CCEEEecCCCcCCCcc
Confidence            9999999999997665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.2e-39  Score=356.02  Aligned_cols=391  Identities=20%  Similarity=0.177  Sum_probs=258.1

Q ss_pred             eEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCccc-chhhhhCC
Q 042537          182 ALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGT-INQWLSRM  260 (789)
Q Consensus       182 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~-~~~~l~~l  260 (789)
                      .++.+++.++ .+|.    ..++|++|++++|.+++..|..|.++++|++|+++          +|.+.+. .+..|.++
T Consensus        14 ~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~----------~n~~~~~i~~~~~~~l   78 (455)
T 3v47_A           14 NAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVE----------QQTPGLVIRNNTFRGL   78 (455)
T ss_dssp             EEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECC----------CCSTTCEECTTTTTTC
T ss_pred             ccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECc----------CCcccceECccccccc
Confidence            4555555544 3333    22356666666666666556666666666666665          3333322 23445556


Q ss_pred             CCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEE
Q 042537          261 YKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLD  340 (789)
Q Consensus       261 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  340 (789)
                      ++|++|+|++|++++..|. .|.++++|++|++++|.+++..+.                      ...+..+++|++|+
T Consensus        79 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~----------------------~~~~~~l~~L~~L~  135 (455)
T 3v47_A           79 SSLIILKLDYNQFLQLETG-AFNGLANLEVLTLTQCNLDGAVLS----------------------GNFFKPLTSLEMLV  135 (455)
T ss_dssp             TTCCEEECTTCTTCEECTT-TTTTCTTCCEEECTTSCCBTHHHH----------------------SSTTTTCTTCCEEE
T ss_pred             ccCCEEeCCCCccCccChh-hccCcccCCEEeCCCCCCCccccC----------------------cccccCcccCCEEE
Confidence            6666666666666533232 455556666666665555432111                      11245556666666


Q ss_pred             ccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccc
Q 042537          341 ISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSES  420 (789)
Q Consensus       341 ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~  420 (789)
                      +++|.+++..|..+....++|+.|++++|.++                         +..+..+..+             
T Consensus       136 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~l~~l-------------  177 (455)
T 3v47_A          136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-------------------------SICEEDLLNF-------------  177 (455)
T ss_dssp             CCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS-------------------------CCCTTTSGGG-------------
T ss_pred             CCCCccCccCcccccCCCCcccEEeCCCCccc-------------------------ccChhhhhcc-------------
Confidence            66666655544432222233333333333333                         2222111000             


Q ss_pred             cchhcccCCCCCCEEEcCCCccccCCCcc--------cccCCCCcEEEcCCCcCcccCCcccccc---CcccEEEccCCe
Q 042537          421 ISFLCSINGHKLEFLDLSNNILSGRLPDC--------WMQFDRLAVLSLANNFFSGKIPKSMGFL---HSIQTLSLYNNS  489 (789)
Q Consensus       421 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~  489 (789)
                             ....++.|++++|.+.+..+..        +..+++|+.|++++|++++..|..+...   ++|+.|++++|.
T Consensus       178 -------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~  250 (455)
T 3v47_A          178 -------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY  250 (455)
T ss_dssp             -------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred             -------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence                   0156778888888887654433        2355778888888888877766666543   677888887776


Q ss_pred             eeeeCCcCccCCCCCcEEeCCCCcccccCchhhh-hcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCC
Q 042537          490 LIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIG-EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIP  568 (789)
Q Consensus       490 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  568 (789)
                      +.+...              ..+.+.+..+..+. -..++|+.|++++|++.+..|..+..+++|++|++++|++++..|
T Consensus       251 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  316 (455)
T 3v47_A          251 NMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD  316 (455)
T ss_dssp             TTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred             cccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence            543211              11122211111111 024789999999999999999999999999999999999998888


Q ss_pred             ccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccc
Q 042537          569 KCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLV  648 (789)
Q Consensus       569 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  648 (789)
                      ..|..+++|                                                 +.|++++|++++..|..|..++
T Consensus       317 ~~~~~l~~L-------------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~  347 (455)
T 3v47_A          317 NAFWGLTHL-------------------------------------------------LKLNLSQNFLGSIDSRMFENLD  347 (455)
T ss_dssp             TTTTTCTTC-------------------------------------------------CEEECCSSCCCEECGGGGTTCT
T ss_pred             hHhcCcccC-------------------------------------------------CEEECCCCccCCcChhHhcCcc
Confidence            888776666                                                 8999999999988899999999


Q ss_pred             cCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCcc
Q 042537          649 GLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQL  718 (789)
Q Consensus       649 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  718 (789)
                      +|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|+++|.+|...++
T Consensus       348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            9999999999999988999999999999999999999888888899999999999999999999975444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4e-39  Score=352.48  Aligned_cols=430  Identities=22%  Similarity=0.260  Sum_probs=170.6

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCC
Q 042537           70 SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKL  149 (789)
Q Consensus        70 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  149 (789)
                      .-.+.++|++|++++|.+.  .+|..++++++|++|++++|.+.+.+|.+++++++|++++++.|..             
T Consensus         6 ~~~~~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-------------   70 (454)
T 1jl5_A            6 RNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-------------   70 (454)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------
T ss_pred             cccccccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------
Confidence            3345688999999999994  4888899999999999999999888999999988876655554421             


Q ss_pred             CCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCC
Q 042537          150 PSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSL  229 (789)
Q Consensus       150 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L  229 (789)
                      .++++|++++|.+++...  .    .  ++|++|++++|.+++ +|..    .++|++|++++|++++.. ..   .++|
T Consensus        71 ~~l~~L~l~~~~l~~lp~--~----~--~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l~-~~---~~~L  133 (454)
T 1jl5_A           71 RQAHELELNNLGLSSLPE--L----P--PHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKALS-DL---PPLL  133 (454)
T ss_dssp             HTCSEEECTTSCCSCCCS--C----C--TTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCCC-SC---CTTC
T ss_pred             cCCCEEEecCCccccCCC--C----c--CCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCccc-CC---CCCC
Confidence            345666666666554322  0    0  455555555555543 3321    135555555555555321 10   1344


Q ss_pred             cEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCc
Q 042537          230 RTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPP  309 (789)
Q Consensus       230 ~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~  309 (789)
                      ++|+++          +|.+++ +| .|+++++|++|++++|++++ +|..    .++|++|++++|++++         
T Consensus       134 ~~L~L~----------~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~---------  187 (454)
T 1jl5_A          134 EYLGVS----------NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE---------  187 (454)
T ss_dssp             CEEECC----------SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS---------
T ss_pred             CEEECc----------CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc---------
Confidence            444444          333333 22 25555555555555555542 3321    1345555555554442         


Q ss_pred             ccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEE
Q 042537          310 FQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSI  389 (789)
Q Consensus       310 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L  389 (789)
                                      +| .+..+++|++|++++|.+++. |..    .++|+.|++++|.++ .+|.  +..++.|++|
T Consensus       188 ----------------l~-~~~~l~~L~~L~l~~N~l~~l-~~~----~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L  242 (454)
T 1jl5_A          188 ----------------LP-ELQNLPFLTAIYADNNSLKKL-PDL----PLSLESIVAGNNILE-ELPE--LQNLPFLTTI  242 (454)
T ss_dssp             ----------------CC-CCTTCTTCCEEECCSSCCSSC-CCC----CTTCCEEECCSSCCS-SCCC--CTTCTTCCEE
T ss_pred             ----------------Cc-cccCCCCCCEEECCCCcCCcC-CCC----cCcccEEECcCCcCC-cccc--cCCCCCCCEE
Confidence                            22 244555555555555555542 211    135666666666665 4553  5566666777


Q ss_pred             EccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCccc
Q 042537          390 DISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGK  469 (789)
Q Consensus       390 ~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  469 (789)
                      ++++|.+++. |..+++|+.|++++|++.+.+..     .++|++|++++|++++. +..   .++|+.|++++|++++.
T Consensus       243 ~l~~N~l~~l-~~~~~~L~~L~l~~N~l~~l~~~-----~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i  312 (454)
T 1jl5_A          243 YADNNLLKTL-PDLPPSLEALNVRDNYLTDLPEL-----PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL  312 (454)
T ss_dssp             ECCSSCCSSC-CSCCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE
T ss_pred             ECCCCcCCcc-cccccccCEEECCCCcccccCcc-----cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc
Confidence            7777666652 33344555555555555442211     03455555555555431 100   13445555555544431


Q ss_pred             CCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccc--cCCCCc
Q 042537          470 IPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHG--NIPFQV  547 (789)
Q Consensus       470 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~--~~~~~~  547 (789)
                       +.   ..++|++|++++|++++ +|..   +++|++|++++|+++ .+|.    .+++|++|++++|++++  .+|.++
T Consensus       313 -~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l  379 (454)
T 1jl5_A          313 -CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLREFPDIPESV  379 (454)
T ss_dssp             -CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             -cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc----hhhhccEEECCCCCCCcCCCChHHH
Confidence             11   01244444444444443 2221   244444444444444 3443    13444444444444443  223222


Q ss_pred             cCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCcee
Q 042537          548 CQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVK  627 (789)
Q Consensus       548 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  627 (789)
                      ..        ++.|.+.+.+|.                                                    .+++|+
T Consensus       380 ~~--------L~~n~~~~~i~~----------------------------------------------------~~~~L~  399 (454)
T 1jl5_A          380 ED--------LRMNSHLAEVPE----------------------------------------------------LPQNLK  399 (454)
T ss_dssp             CE--------EECCC-----------------------------------------------------------------
T ss_pred             Hh--------hhhccccccccc----------------------------------------------------ccCcCC
Confidence            21        112222222221                                                    134568


Q ss_pred             EEEcccCcccc--ccchhhhccccCcEEEccCCcceeecCcccccC
Q 042537          628 ILDFSMNKLSG--TIPEEIMDLVGLVALNLSRNNLTGQITPKIDQL  671 (789)
Q Consensus       628 ~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  671 (789)
                      .||+++|++++  .+|.      .++.|.+.+|.+.+.++.+....
T Consensus       400 ~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~  439 (454)
T 1jl5_A          400 QLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHETT  439 (454)
T ss_dssp             ----------------------------------------------
T ss_pred             EEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHHh
Confidence            99999999986  5664      46677888898887766555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.1e-39  Score=352.39  Aligned_cols=322  Identities=25%  Similarity=0.309  Sum_probs=162.8

Q ss_pred             CCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCC
Q 042537           98 SLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFST  177 (789)
Q Consensus        98 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  177 (789)
                      ..++|++|++++|.+ +.+|.+|+++++|++|++++|++.+.  +|..++++++|+.+++.+|..               
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~l~l~~c~~---------------   70 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERN--APPGNGEQREMAVSRLRDCLD---------------   70 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHT--SCTTSCCCHHHHHHHHHHHHH---------------
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCccccc--CCcccccchhcchhhhhhhhc---------------
Confidence            358899999999999 68999999999999999999988763  678888888888887776631               


Q ss_pred             CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhh
Q 042537          178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL  257 (789)
Q Consensus       178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l  257 (789)
                      .++++|++++|.+++ +|.    ..++|++|++++|.+++ +|..   +++|+.|++++|+++.+           +.. 
T Consensus        71 ~~l~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-----------~~~-  129 (454)
T 1jl5_A           71 RQAHELELNNLGLSS-LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-----------SDL-  129 (454)
T ss_dssp             HTCSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-----------CSC-
T ss_pred             cCCCEEEecCCcccc-CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-----------cCC-
Confidence            567778888777764 332    12467777777777775 3332   35566666664433321           100 


Q ss_pred             hCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCcc
Q 042537          258 SRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIE  337 (789)
Q Consensus       258 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  337 (789)
                        .++|++|++++|++++ +|.  |.++++|++|++++|++++                         +|..   ..+|+
T Consensus       130 --~~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~-------------------------lp~~---~~~L~  176 (454)
T 1jl5_A          130 --PPLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKK-------------------------LPDL---PPSLE  176 (454)
T ss_dssp             --CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSC-------------------------CCCC---CTTCC
T ss_pred             --CCCCCEEECcCCCCCC-Ccc--cCCCCCCCEEECCCCcCcc-------------------------cCCC---ccccc
Confidence              1466666666666663 552  5666666666666665542                         1211   12444


Q ss_pred             EEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcC
Q 042537          338 VLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKF  417 (789)
Q Consensus       338 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i  417 (789)
                      +|++++|.                         +++ +|  .+..++.|+.|++++|.+++. |..++            
T Consensus       177 ~L~L~~n~-------------------------l~~-l~--~~~~l~~L~~L~l~~N~l~~l-~~~~~------------  215 (454)
T 1jl5_A          177 FIAAGNNQ-------------------------LEE-LP--ELQNLPFLTAIYADNNSLKKL-PDLPL------------  215 (454)
T ss_dssp             EEECCSSC-------------------------CSS-CC--CCTTCTTCCEEECCSSCCSSC-CCCCT------------
T ss_pred             EEECcCCc-------------------------CCc-Cc--cccCCCCCCEEECCCCcCCcC-CCCcC------------
Confidence            44444444                         442 33  244555566666666665542 22223            


Q ss_pred             ccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcC
Q 042537          418 SESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF  497 (789)
Q Consensus       418 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  497 (789)
                                   +|++|++++|.++ .+| .+..+++|++|++++|++++ +|..   +++|++|++++|++++ +|..
T Consensus       216 -------------~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~  275 (454)
T 1jl5_A          216 -------------SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL  275 (454)
T ss_dssp             -------------TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC
T ss_pred             -------------cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc
Confidence                         4555555555554 333 25555555555555555553 2321   2455555555555553 2322


Q ss_pred             ccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCC-CcCceEeccCCcccc
Q 042537          498 FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQL-SYIQILDLSLNNISG  565 (789)
Q Consensus       498 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~  565 (789)
                         .++|++|++++|++++ +|.    ..++|+.|++++|++++. +    .+ ++|++|++++|++++
T Consensus       276 ---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          276 ---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             ---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC
T ss_pred             ---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc
Confidence               2455566666665552 221    124556666666655532 1    12 356666666666553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.5e-39  Score=337.24  Aligned_cols=291  Identities=27%  Similarity=0.414  Sum_probs=240.9

Q ss_pred             CHHHHHHHHHHhhcCcCCCCCCCCCCCCCCCCCCCc--eeeeEecCCC--CcEEEEEcCCCCCCCCccc--ccCccccCC
Q 042537            1 MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCY--WRGVRCSNTT--GHVIVLDLQVLVHSEPLKG--TISPSLLKL   74 (789)
Q Consensus         1 ~~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~~~~~l~~--~l~~~~~~l   74 (789)
                      .++|++||++||+++.||. .+++|.   .+++||.  |.||+|+...  ++|++|+|++    +.+.|  .+|+.|.++
T Consensus         4 ~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~----~~l~~~~~~~~~l~~l   75 (313)
T 1ogq_A            4 NPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG----LNLPKPYPIPSSLANL   75 (313)
T ss_dssp             CHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC----CCCSSCEECCGGGGGC
T ss_pred             CHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC----CCccCCcccChhHhCC
Confidence            3789999999999998887 799998   4678999  9999997544  8999999999    88888  899999999


Q ss_pred             CCCCEEeCCC-CCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCC
Q 042537           75 YHLRHLDLSE-NDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR  153 (789)
Q Consensus        75 ~~L~~L~Ls~-n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~  153 (789)
                      ++|++|++++ |.+.+. +|..|+++++|++|++++|.+++.+|..|.++++|++|++++|.+++.  +|..+.++++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~  152 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT--LPPSISSLPNLV  152 (313)
T ss_dssp             TTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC--CCGGGGGCTTCC
T ss_pred             CCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc--CChHHhcCCCCC
Confidence            9999999995 998876 899999999999999999999989999999999999999999999964  678899999999


Q ss_pred             EEEcCCCCCCCCccccccccccCCC-CCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEE
Q 042537          154 TLNLEHCHLPPIIPSDLLHLNFSTS-SLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTL  232 (789)
Q Consensus       154 ~L~L~~n~l~~~~~~~~~~~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  232 (789)
                      +|++++|.+++.+|.  .+..+  + +|++|++++|.+++.+|..+....  |++|++++|.+++..|..|..+++|+.|
T Consensus       153 ~L~L~~N~l~~~~p~--~l~~l--~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  226 (313)
T 1ogq_A          153 GITFDGNRISGAIPD--SYGSF--SKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             EEECCSSCCEEECCG--GGGCC--CTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             eEECcCCcccCcCCH--HHhhh--hhcCcEEECcCCeeeccCChHHhCCc--ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence            999999999877773  33443  5 888888888888877777766553  8888888888888888888888888888


Q ss_pred             ECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccc
Q 042537          233 YLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQL  312 (789)
Q Consensus       233 ~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L  312 (789)
                      +++          +|.+++.+|. +..+++|++|++++|++++.+|. .|..+++|++|++++|++++..+.. ..+++|
T Consensus       227 ~L~----------~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L  293 (313)
T 1ogq_A          227 HLA----------KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF  293 (313)
T ss_dssp             ECC----------SSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEEECCCS-TTGGGS
T ss_pred             ECC----------CCceeeecCc-ccccCCCCEEECcCCcccCcCCh-HHhcCcCCCEEECcCCcccccCCCC-cccccc
Confidence            888          4445555554 67788888888888888877766 5788888888888888887665543 445555


Q ss_pred             eeEeccCcc
Q 042537          313 IIILLGSCQ  321 (789)
Q Consensus       313 ~~L~l~~~~  321 (789)
                      +.+++.+|.
T Consensus       294 ~~l~l~~N~  302 (313)
T 1ogq_A          294 DVSAYANNK  302 (313)
T ss_dssp             CGGGTCSSS
T ss_pred             ChHHhcCCC
Confidence            555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-37  Score=343.65  Aligned_cols=386  Identities=22%  Similarity=0.245  Sum_probs=290.5

Q ss_pred             CEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCe
Q 042537          103 RYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA  182 (789)
Q Consensus       103 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~  182 (789)
                      +.++.++++++ .+|. +.  ++|++|+|++|.++++  .|..++++++|++|++++|.+.+.++               
T Consensus        13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~n~~~~~i~---------------   71 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAEL--NETSFSRLQDLQFLKVEQQTPGLVIR---------------   71 (455)
T ss_dssp             TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEE--CTTTTSSCTTCCEEECCCCSTTCEEC---------------
T ss_pred             cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcC--ChhHhccCccccEEECcCCcccceEC---------------
Confidence            45677777776 4554 32  6788888888887764  35677777777777777776654332               


Q ss_pred             EEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhh--hhCC
Q 042537          183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQW--LSRM  260 (789)
Q Consensus       183 L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~--l~~l  260 (789)
                                   +..+...++|++|++++|.+++..|..|.++++|++|+++          +|.+++..+..  |+.+
T Consensus        72 -------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~----------~n~l~~~~~~~~~~~~l  128 (455)
T 3v47_A           72 -------------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT----------QCNLDGAVLSGNFFKPL  128 (455)
T ss_dssp             -------------TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT----------TSCCBTHHHHSSTTTTC
T ss_pred             -------------cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC----------CCCCCccccCcccccCc
Confidence                         2222222478888888888887778888888888888888          55565544444  7888


Q ss_pred             CCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCc--ccceeEeccCccCCCCCchh--------c
Q 042537          261 YKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPP--FQLIIILLGSCQMGPHFPKW--------L  330 (789)
Q Consensus       261 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------l  330 (789)
                      ++|++|++++|.+.+..|...+.++++|++|++++|++.+..+..+..+  .+++.+++++|.+....+.+        +
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  208 (455)
T 3v47_A          129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP  208 (455)
T ss_dssp             TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred             ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence            8888888888888866666558888888888888888887777776655  67888888888887655443        3


Q ss_pred             cCCCCccEEEccCCcCCCCcchhHhhhc--cCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCc
Q 042537          331 QTQNQIEVLDISDAGISDTVPDWFWDLS--HTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNAS  408 (789)
Q Consensus       331 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~  408 (789)
                      ..+++|++|++++|.+++..|..+....  .+++.|++++|...+...               ..+.+....+       
T Consensus       209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------~~~~~~~~~~-------  266 (455)
T 3v47_A          209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF---------------GHTNFKDPDN-------  266 (455)
T ss_dssp             TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------------TCCSSCCCCT-------
T ss_pred             cccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc---------------chhhhccCcc-------
Confidence            3568899999999999988887776542  466666666665543211               0011110000       


Q ss_pred             EEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCC
Q 042537          409 VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNN  488 (789)
Q Consensus       409 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  488 (789)
                            ..+       .....++|+.|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus       267 ------~~~-------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  333 (455)
T 3v47_A          267 ------FTF-------KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN  333 (455)
T ss_dssp             ------TTT-------GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ------ccc-------ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence                  000       0011168999999999999888999999999999999999999888889999999999999999


Q ss_pred             eeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCC
Q 042537          489 SLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIP  568 (789)
Q Consensus       489 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  568 (789)
                      .+++..+..|..+++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus       334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99988888999999999999999999866666665 79999999999999998777778899999999999999997766

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.6e-35  Score=324.10  Aligned_cols=375  Identities=20%  Similarity=0.174  Sum_probs=268.0

Q ss_pred             CccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhC
Q 042537           68 SPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIID  147 (789)
Q Consensus        68 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~  147 (789)
                      +..++++++|++|++++|.+++  +| .++.+++|++|++++|.+++. |  ++++++|++|++++|+++++   +  ++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~--~~  103 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---D--VT  103 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---C--CT
T ss_pred             ccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---e--cC
Confidence            3456777778888888877774  34 567777888888888877753 3  77777888888888777774   2  67


Q ss_pred             CCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCC
Q 042537          148 KLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMV  227 (789)
Q Consensus       148 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~  227 (789)
                      ++++|++|++++|.+++. +    +..+  ++|++|++++|.+++. +  +.. .++|++|++++|...+.+  .+..++
T Consensus       104 ~l~~L~~L~L~~N~l~~l-~----~~~l--~~L~~L~l~~N~l~~l-~--l~~-l~~L~~L~l~~n~~~~~~--~~~~l~  170 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKL-D----VSQN--PLLTYLNCARNTLTEI-D--VSH-NTQLTELDCHLNKKITKL--DVTPQT  170 (457)
T ss_dssp             TCTTCCEEECCSSCCSCC-C----CTTC--TTCCEEECTTSCCSCC-C--CTT-CTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred             CCCcCCEEECCCCcCCee-c----CCCC--CcCCEEECCCCcccee-c--ccc-CCcCCEEECCCCCccccc--ccccCC
Confidence            777788888888777663 2    3344  7777777777777652 2  223 337777777777444333  466777


Q ss_pred             CCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCC
Q 042537          228 SLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWI  307 (789)
Q Consensus       228 ~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  307 (789)
                      +|+.|++++|+++.+           |  ++.+++|++|++++|.+++. +   +..+++|++|++++|++++. +  +.
T Consensus       171 ~L~~L~ls~n~l~~l-----------~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~i-p--~~  230 (457)
T 3bz5_A          171 QLTTLDCSFNKITEL-----------D--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTEI-D--VT  230 (457)
T ss_dssp             TCCEEECCSSCCCCC-----------C--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred             cCCEEECCCCcccee-----------c--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccccc-C--cc
Confidence            777777774444332           2  55677788888888877743 2   66777788888888877763 2  56


Q ss_pred             CcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCC
Q 042537          308 PPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSS  387 (789)
Q Consensus       308 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~  387 (789)
                      .+++|+.|++++|.+.+..   +..+++|+.|++++|               +|+.|++++|.+.+.+|   +..++.|+
T Consensus       231 ~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~---~~~l~~L~  289 (457)
T 3bz5_A          231 PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ---AEGCRKIK  289 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE---CTTCTTCC
T ss_pred             ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc---ccccccCC
Confidence            6677777777777776543   455677888887765               45677888888777766   35667888


Q ss_pred             EEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCc
Q 042537          388 SIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFS  467 (789)
Q Consensus       388 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  467 (789)
                      .|++++|...+.+|....+++.+++++|              ++|++|++++|++++. +  +.++++|+.|++++|+++
T Consensus       290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~  352 (457)
T 3bz5_A          290 ELDVTHNTQLYLLDCQAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ  352 (457)
T ss_dssp             CCCCTTCTTCCEEECTTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred             EEECCCCcccceeccCCCcceEechhhc--------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC
Confidence            9999999888877776777888877766              6899999999999874 3  888999999999999998


Q ss_pred             ccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCC
Q 042537          468 GKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN  537 (789)
Q Consensus       468 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n  537 (789)
                      +        ++.|+.|++++|.+.|.     ..+..|+.+++++|+++|.+|..++....++.....+.+
T Consensus       353 ~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~~  409 (457)
T 3bz5_A          353 D--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDG  409 (457)
T ss_dssp             B--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESSS
T ss_pred             C--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCCC
Confidence            5        24567778899988876     345667888999999999999877655555555544433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.6e-35  Score=320.53  Aligned_cols=363  Identities=17%  Similarity=0.113  Sum_probs=247.0

Q ss_pred             CcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCcccccc
Q 042537           92 IPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLL  171 (789)
Q Consensus        92 ~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  171 (789)
                      .+..++++++|++|++++|.+++. | +++.+++|++|++++|+++++   |  ++.+++|++|++++|.+++. +    
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~-~----  101 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNL-D----  101 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCC-C----
T ss_pred             cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCcee-e----
Confidence            556788999999999999999964 5 799999999999999999985   2  88999999999999998874 2    


Q ss_pred             ccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcc
Q 042537          172 HLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNG  251 (789)
Q Consensus       172 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~  251 (789)
                      +..+  ++|++|++++|++++ ++  +. ..++|++|++++|++++.   .++.+++|+.|++++|          ...+
T Consensus       102 ~~~l--~~L~~L~L~~N~l~~-l~--~~-~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n----------~~~~  162 (457)
T 3bz5_A          102 VTPL--TKLTYLNCDTNKLTK-LD--VS-QNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLN----------KKIT  162 (457)
T ss_dssp             CTTC--TTCCEEECCSSCCSC-CC--CT-TCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTC----------SCCC
T ss_pred             cCCC--CcCCEEECCCCcCCe-ec--CC-CCCcCCEEECCCCcccee---ccccCCcCCEEECCCC----------Cccc
Confidence            3445  788888888888875 33  33 334788888888887764   2667777777777744          2222


Q ss_pred             cchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhcc
Q 042537          252 TINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQ  331 (789)
Q Consensus       252 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  331 (789)
                      .+  .++.+++|++|++++|++++ +|   +..+++|++|++++|++++.   .+..+++|+.|++++|.+.+ +|  +.
T Consensus       163 ~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~  230 (457)
T 3bz5_A          163 KL--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VT  230 (457)
T ss_dssp             CC--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT
T ss_pred             cc--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cc
Confidence            22  25667778888888887774 43   66777777777777777643   24444455555555554443 22  44


Q ss_pred             CCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEE
Q 042537          332 TQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLN  411 (789)
Q Consensus       332 ~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~  411 (789)
                      .+++|+.|++++|++++..                             ...++.|+.++++.|           +++.++
T Consensus       231 ~l~~L~~L~l~~N~l~~~~-----------------------------~~~l~~L~~L~l~~n-----------~L~~L~  270 (457)
T 3bz5_A          231 PLTQLTYFDCSVNPLTELD-----------------------------VSTLSKLTTLHCIQT-----------DLLEID  270 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCC-----------------------------CTTCTTCCEEECTTC-----------CCSCCC
T ss_pred             ccCCCCEEEeeCCcCCCcC-----------------------------HHHCCCCCEEeccCC-----------CCCEEE
Confidence            4444444444444444322                             223344555555443           234455


Q ss_pred             cCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeee
Q 042537          412 LSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLI  491 (789)
Q Consensus       412 l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  491 (789)
                      +++|.+.+.++.   ..+++|+.|++++|...+.+|.   ...+|+.|++++|             ++|++|++++|+++
T Consensus       271 l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~  331 (457)
T 3bz5_A          271 LTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELT  331 (457)
T ss_dssp             CTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCS
T ss_pred             CCCCccCCcccc---cccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccc
Confidence            566655544442   1226777777777776655553   2344555544443             67889999999998


Q ss_pred             eeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccc
Q 042537          492 GELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCL  571 (789)
Q Consensus       492 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  571 (789)
                      +. +  +..+++|+.|++++|++++         ++.|+.|++++|.+.|.     ..+..|+.+++++|+++|.+|..+
T Consensus       332 ~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          332 EL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             CC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             cc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence            74 3  8888999999999999883         35667778888888865     356778889999999999888765


Q ss_pred             cc
Q 042537          572 NN  573 (789)
Q Consensus       572 ~~  573 (789)
                      ..
T Consensus       395 ~~  396 (457)
T 3bz5_A          395 LD  396 (457)
T ss_dssp             BC
T ss_pred             hc
Confidence            43

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.6e-36  Score=331.66  Aligned_cols=142  Identities=20%  Similarity=0.184  Sum_probs=84.1

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      ++|++|++++|.+++..+..|.++++|+.|++++|++++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++
T Consensus       128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred             ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence            55666666666666666666666666666666666666555555666666666666666666666666666666666666


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLN  572 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  572 (789)
                      ++|...+.+|...+ ...+|+.|++++|++++..+..+..+++|+.|++++|++++..+..|.
T Consensus       208 ~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          208 SHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             ECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred             CCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence            66665555555544 234555555555555533323445555555555555555544443333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.2e-35  Score=307.43  Aligned_cols=259  Identities=32%  Similarity=0.531  Sum_probs=242.3

Q ss_pred             CCCCEEEcCCCcccc--CCCcccccCCCCcEEEcCC-CcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcE
Q 042537          430 HKLEFLDLSNNILSG--RLPDCWMQFDRLAVLSLAN-NFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLIL  506 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  506 (789)
                      .+++.|++++|.+++  .+|..|.++++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            578999999999998  8899999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCC-cCceEeccCCcccccCCccccccccCcccCCCcc
Q 042537          507 MDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLS-YIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNL  585 (789)
Q Consensus       507 L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  585 (789)
                      |++++|.+.+.+|..+. .+++|++|++++|++++.+|..+..++ +|++|++++|++++..|..+..+. |        
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence            99999999988998887 799999999999999999999999998 999999999999998888877654 4        


Q ss_pred             ccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecC
Q 042537          586 AITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQIT  665 (789)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  665 (789)
                                                               +.|++++|++++.+|..|..+++|+.|+|++|++++.+|
T Consensus       200 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  238 (313)
T 1ogq_A          200 -----------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG  238 (313)
T ss_dssp             -----------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred             -----------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence                                                     899999999999999999999999999999999997666


Q ss_pred             cccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCCCCCCC
Q 042537          666 PKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKC  741 (789)
Q Consensus       666 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~l~~~c  741 (789)
                      . +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.|||++||.|+. .|
T Consensus       239 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             c-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            5 88999999999999999999999999999999999999999999999888889999999999999998876 46

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.2e-34  Score=315.23  Aligned_cols=346  Identities=24%  Similarity=0.347  Sum_probs=242.7

Q ss_pred             cCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccC
Q 042537          225 RMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSH  304 (789)
Q Consensus       225 ~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  304 (789)
                      .+++++.|+++++.          +.. +| .+..+++|++|++++|.+.+ ++.  +..+++|++|++++|.+....+ 
T Consensus        44 ~l~~l~~L~l~~~~----------i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~-  107 (466)
T 1o6v_A           44 DLDQVTTLQADRLG----------IKS-ID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP-  107 (466)
T ss_dssp             HHHTCCEEECCSSC----------CCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             HhccccEEecCCCC----------Ccc-Cc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh-
Confidence            35566777776443          332 22 26667788888888887773 443  7777788888887777764332 


Q ss_pred             CCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCC
Q 042537          305 DWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDP  384 (789)
Q Consensus       305 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  384 (789)
                                               +..+++|++|++++|.+++..+  + ...++|++|++++|.+++ ++  .+..++
T Consensus       108 -------------------------~~~l~~L~~L~L~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~-~~--~~~~l~  156 (466)
T 1o6v_A          108 -------------------------LANLTNLTGLTLFNNQITDIDP--L-KNLTNLNRLELSSNTISD-IS--ALSGLT  156 (466)
T ss_dssp             -------------------------GTTCTTCCEEECCSSCCCCCGG--G-TTCTTCSEEEEEEEEECC-CG--GGTTCT
T ss_pred             -------------------------hcCCCCCCEEECCCCCCCCChH--H-cCCCCCCEEECCCCccCC-Ch--hhccCC
Confidence                                     4455555555555555554332  2 223455555555555542 22  233444


Q ss_pred             CCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCC
Q 042537          385 FSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANN  464 (789)
Q Consensus       385 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  464 (789)
                      +|+.++++ +                     .+.+..+   ...+++|++|++++|.+++.  ..+..+++|+.|++++|
T Consensus       157 ~L~~L~l~-~---------------------~~~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n  209 (466)
T 1o6v_A          157 SLQQLSFG-N---------------------QVTDLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN  209 (466)
T ss_dssp             TCSEEEEE-E---------------------SCCCCGG---GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             cccEeecC-C---------------------cccCchh---hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCC
Confidence            44444443 1                     1111111   11227788888888887643  34778888888888888


Q ss_pred             cCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCC
Q 042537          465 FFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIP  544 (789)
Q Consensus       465 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~  544 (789)
                      .+.+..|  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+ ++. + ..+++|+.|++++|++++..+
T Consensus       210 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~L~l~~n~l~~~~~  282 (466)
T 1o6v_A          210 QISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP-L-SGLTKLTELKLGANQISNISP  282 (466)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-G-TTCTTCSEEECCSSCCCCCGG
T ss_pred             ccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc-chh-h-hcCCCCCEEECCCCccCcccc
Confidence            8886544  66788888888888888754  457788899999999998884 443 3 368899999999999886544


Q ss_pred             CCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccC
Q 042537          545 FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLG  624 (789)
Q Consensus       545 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  624 (789)
                        +..+++|+.|++++|++++..+  +..+                                                 +
T Consensus       283 --~~~l~~L~~L~L~~n~l~~~~~--~~~l-------------------------------------------------~  309 (466)
T 1o6v_A          283 --LAGLTALTNLELNENQLEDISP--ISNL-------------------------------------------------K  309 (466)
T ss_dssp             --GTTCTTCSEEECCSSCCSCCGG--GGGC-------------------------------------------------T
T ss_pred             --ccCCCccCeEEcCCCcccCchh--hcCC-------------------------------------------------C
Confidence              7788999999999998886543  3333                                                 3


Q ss_pred             ceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEecc
Q 042537          625 LVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS  704 (789)
Q Consensus       625 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  704 (789)
                      .|+.|++++|++++..|  +..+++|++|++++|++++.  +.+..+++|+.|++++|++++..|  +..+++|+.|+++
T Consensus       310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  383 (466)
T 1o6v_A          310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN  383 (466)
T ss_dssp             TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence            44899999999997766  78999999999999999864  578999999999999999998877  8899999999999


Q ss_pred             CCcccc
Q 042537          705 YNNLSG  710 (789)
Q Consensus       705 ~N~l~~  710 (789)
                      +|++++
T Consensus       384 ~n~~~~  389 (466)
T 1o6v_A          384 DQAWTN  389 (466)
T ss_dssp             CEEEEC
T ss_pred             CCcccC
Confidence            999987

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.5e-33  Score=306.43  Aligned_cols=191  Identities=27%  Similarity=0.392  Sum_probs=120.1

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      ++|++|++++|.+++..+  +..+++|+.|++++|++++.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  272 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL  272 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence            556666666666654433  55566666666666666642  345566666666666666665433  666666777777


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      ++|.++ .++. + ..+++|+.|++++|++.+..+  +..+++|+.|++++|++++..|  +..++              
T Consensus       273 ~~n~l~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~--------------  331 (466)
T 1o6v_A          273 GANQIS-NISP-L-AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT--------------  331 (466)
T ss_dssp             CSSCCC-CCGG-G-TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCT--------------
T ss_pred             CCCccC-cccc-c-cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCc--------------
Confidence            777666 3433 2 256677777777777665433  5666777777777776665443  33333              


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID  669 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  669 (789)
                                                         .|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +.
T Consensus       332 -----------------------------------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~  372 (466)
T 1o6v_A          332 -----------------------------------KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA  372 (466)
T ss_dssp             -----------------------------------TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT
T ss_pred             -----------------------------------cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh
Confidence                                               336777777777644  356677777777777777776555  67


Q ss_pred             cCCCCCEEeCCCCcccc
Q 042537          670 QLKSLDFLDLSQNQFVG  686 (789)
Q Consensus       670 ~l~~L~~L~Ls~N~l~~  686 (789)
                      .+++|+.|++++|.+++
T Consensus       373 ~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          373 NLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TCTTCCEEECCCEEEEC
T ss_pred             cCCCCCEEeccCCcccC
Confidence            77777777777777765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.7e-34  Score=314.72  Aligned_cols=343  Identities=17%  Similarity=0.157  Sum_probs=246.2

Q ss_pred             EEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCC---CCCCcEEEcCC
Q 042537          338 VLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPL---PSNASVLNLSR  414 (789)
Q Consensus       338 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~  414 (789)
                      .++.+++.++.. |..+   ++.++.|++++|.+++..+. .+..+++|++|++++|.+++..|..   +++|+.|++++
T Consensus        15 ~v~c~~~~l~~i-p~~~---~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           15 AVLCHRKRFVAV-PEGI---PTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             EEECCSCCCSSC-CSCC---CTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcCcC-CCCC---CCCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            455555555432 2221   23566666666666543333 5566666666666666666654433   34556666666


Q ss_pred             CcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeC
Q 042537          415 NKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGEL  494 (789)
Q Consensus       415 n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  494 (789)
                      |++.+..+..+ ..+++|++|++++|.+++..+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus        90 n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           90 NRLKLIPLGVF-TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SCCCSCCTTSS-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CcCCccCcccc-cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            66555443322 12267788888888777777777777888888888888877777777777778888888888777666


Q ss_pred             CcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccccc
Q 042537          495 PSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNF  574 (789)
Q Consensus       495 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  574 (789)
                      +..|..+++|+.|++++|.+.+ ++...+..+++|+.|++++|...+.++.......+|+.|++++|++++..+..+..+
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  247 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL  247 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred             hhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence            6667777788888888887773 444334467778888888777766666666666678888888887775444455444


Q ss_pred             ccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEE
Q 042537          575 TGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALN  654 (789)
Q Consensus       575 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  654 (789)
                      ++                                                 |+.|++++|++++..+..|..+++|++|+
T Consensus       248 ~~-------------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (477)
T 2id5_A          248 VY-------------------------------------------------LRFLNLSYNPISTIEGSMLHELLRLQEIQ  278 (477)
T ss_dssp             TT-------------------------------------------------CCEEECCSSCCCEECTTSCTTCTTCCEEE
T ss_pred             cc-------------------------------------------------cCeeECCCCcCCccChhhccccccCCEEE
Confidence            44                                                 49999999999988888899999999999


Q ss_pred             ccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCC
Q 042537          655 LSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCG  734 (789)
Q Consensus       655 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~  734 (789)
                      |++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.|.++....+.......+.++...|.
T Consensus       279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~  358 (477)
T 2id5_A          279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCA  358 (477)
T ss_dssp             CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEE
T ss_pred             CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeC
Confidence            99999999999999999999999999999998888889999999999999999998877543333333455778888887


Q ss_pred             CC
Q 042537          735 LP  736 (789)
Q Consensus       735 ~~  736 (789)
                      .|
T Consensus       359 ~p  360 (477)
T 2id5_A          359 TP  360 (477)
T ss_dssp             ES
T ss_pred             Cc
Confidence            65

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.5e-34  Score=306.32  Aligned_cols=238  Identities=20%  Similarity=0.202  Sum_probs=159.3

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      ++|++|++++|.+++..+..|.++++|+.|++++|++++.   .+..+++|+.|++++|.+.+.     ...++|+.|++
T Consensus       141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l  212 (390)
T 3o6n_A          141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDA  212 (390)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEEC
T ss_pred             CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEEC
Confidence            4555666666666555555566666666666666666643   234456666666666666532     22346677777


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      ++|.+. .+|...   .++|+.|++++|++++.  ..+..+++|++|++++|.+++..|..|..+++|            
T Consensus       213 ~~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------  274 (390)
T 3o6n_A          213 SHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------  274 (390)
T ss_dssp             CSSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred             CCCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC------------
Confidence            777766 444432   35677777777777643  356677777777777777776666666555544            


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID  669 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  669 (789)
                                                           +.|++++|+++ .+|..+..+++|++|+|++|+++ .+|..+.
T Consensus       275 -------------------------------------~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~  315 (390)
T 3o6n_A          275 -------------------------------------ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP  315 (390)
T ss_dssp             -------------------------------------CEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred             -------------------------------------CEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCcccc
Confidence                                                 77777777777 35666677888888888888888 5677788


Q ss_pred             cCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCC
Q 042537          670 QLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP  736 (789)
Q Consensus       670 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  736 (789)
                      .+++|+.|++++|+++.. |  +..+++|++|++++|++.+.... ..+..+....+.+++..|.++
T Consensus       316 ~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          316 QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred             ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence            888888888888888755 2  56778899999999998875332 344455555567777777643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3e-33  Score=318.63  Aligned_cols=238  Identities=20%  Similarity=0.193  Sum_probs=175.3

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      ++|++|++++|.+++..|..|.++++|+.|++++|.+++..   +..+++|+.|++++|.+.+.     ...++|+.|++
T Consensus       147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~l  218 (597)
T 3oja_B          147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDA  218 (597)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEEC
T ss_pred             CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeec
Confidence            55666666666666666666777777777777777776542   44566777777777776542     23456777777


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      ++|.+. .++..+   .++|+.|++++|.+++  +..+..+++|+.|++++|.+++..|..|..+++|            
T Consensus       219 s~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------  280 (597)
T 3oja_B          219 SHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------  280 (597)
T ss_dssp             CSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred             cCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC------------
Confidence            777776 555433   3578888888888775  3567778888888888888887777777666555            


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID  669 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  669 (789)
                                                           +.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+.
T Consensus       281 -------------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~  321 (597)
T 3oja_B          281 -------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP  321 (597)
T ss_dssp             -------------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred             -------------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc
Confidence                                                 788888888874 5666777889999999999998 6788888


Q ss_pred             cCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCC
Q 042537          670 QLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP  736 (789)
Q Consensus       670 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  736 (789)
                      .+++|+.|+|++|.+++..   +..+++|++|++++|++.|..+. ..+..+....+.+++..|+.+
T Consensus       322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            8999999999999998653   56778999999999999887543 345566666788888899864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-31  Score=286.75  Aligned_cols=310  Identities=17%  Similarity=0.215  Sum_probs=208.7

Q ss_pred             CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhh
Q 042537          178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL  257 (789)
Q Consensus       178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l  257 (789)
                      ++++.+++++|.+. .+|..++...++|++|++++|.+++..+..|..+++|++|+++          +|.+++..|..|
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~----------~n~l~~~~~~~~  113 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG----------FNAIRYLPPHVF  113 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECC----------SSCCCCCCTTTT
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECC----------CCCCCcCCHHHh
Confidence            55666666666554 4455444444456666666666665555556666666665555          344444445555


Q ss_pred             hCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCcc
Q 042537          258 SRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIE  337 (789)
Q Consensus       258 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  337 (789)
                      +++++|++|++++|.++ .+|...|.++++|++|++++|++.                        ...+..+..+++|+
T Consensus       114 ~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~~~l~~L~  168 (390)
T 3o6n_A          114 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE------------------------RIEDDTFQATTSLQ  168 (390)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC------------------------BCCTTTTSSCTTCC
T ss_pred             cCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC------------------------ccChhhccCCCCCC
Confidence            55666666666666655 444444555555666555555554                        34445566666677


Q ss_pred             EEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcC
Q 042537          338 VLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKF  417 (789)
Q Consensus       338 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i  417 (789)
                      +|++++|.+++....    ..++|+.+++++|.++                         +..  .+.+++.|++++|.+
T Consensus       169 ~L~l~~n~l~~~~~~----~l~~L~~L~l~~n~l~-------------------------~~~--~~~~L~~L~l~~n~l  217 (390)
T 3o6n_A          169 NLQLSSNRLTHVDLS----LIPSLFHANVSYNLLS-------------------------TLA--IPIAVEELDASHNSI  217 (390)
T ss_dssp             EEECCSSCCSBCCGG----GCTTCSEEECCSSCCS-------------------------EEE--CCSSCSEEECCSSCC
T ss_pred             EEECCCCcCCccccc----cccccceeeccccccc-------------------------ccC--CCCcceEEECCCCee
Confidence            777777666544221    1234555555555443                         211  123455555555555


Q ss_pred             ccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcC
Q 042537          418 SESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF  497 (789)
Q Consensus       418 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  497 (789)
                      .......    .++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..|..+++|++|++++|++++. |..
T Consensus       218 ~~~~~~~----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~  290 (390)
T 3o6n_A          218 NVVRGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLY  290 (390)
T ss_dssp             CEEECCC----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECS
T ss_pred             eeccccc----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-Ccc
Confidence            5443221    16788999999988754  5788899999999999999988899999999999999999999864 556


Q ss_pred             ccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccccc
Q 042537          498 FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI  566 (789)
Q Consensus       498 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  566 (789)
                      +..+++|++|++++|++. .+|..+. .+++|++|++++|+++.. +  +..+++|+.|++++|++...
T Consensus       291 ~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          291 GQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             SSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             cCCCCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            678999999999999998 7888776 689999999999999854 3  67889999999999998753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.5e-31  Score=281.20  Aligned_cols=196  Identities=24%  Similarity=0.336  Sum_probs=116.7

Q ss_pred             cccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCC
Q 042537          450 WMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKL  529 (789)
Q Consensus       450 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L  529 (789)
                      +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+. .++. + ..+++|
T Consensus       151 ~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~-~~~~~L  223 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP-V-ANMTRL  223 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-G-GGCTTC
T ss_pred             hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch-h-hcCCcC
Confidence            4455555555555555543222  4455555555555555553322  555556666666666655 2332 2 245666


Q ss_pred             cEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeE
Q 042537          530 VVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVV  609 (789)
Q Consensus       530 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  609 (789)
                      ++|++++|++++..+  +..+++|++|++++|.+++.  ..+..+                                   
T Consensus       224 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l-----------------------------------  264 (347)
T 4fmz_A          224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL-----------------------------------  264 (347)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC-----------------------------------
T ss_pred             CEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC-----------------------------------
Confidence            666666666654332  55666666666666666542  122222                                   


Q ss_pred             EEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCc
Q 042537          610 LTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIP  689 (789)
Q Consensus       610 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  689 (789)
                                    +.|+.|++++|++++.  +.+..+++|++|++++|++++..|..++.+++|+.|++++|++++..|
T Consensus       265 --------------~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          265 --------------TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             --------------TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             --------------CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence                          2336777777777643  346777777788888887777777777777788888888888776655


Q ss_pred             hhhhcCCCCCeEeccCCccc
Q 042537          690 SSLCQLSRLSVMNLSYNNLS  709 (789)
Q Consensus       690 ~~l~~l~~L~~L~ls~N~l~  709 (789)
                        +..+++|++|++++|+++
T Consensus       329 --~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          329 --LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             --GGGCTTCSEESSSCC---
T ss_pred             --hhhhhccceeehhhhccc
Confidence              677778888888887764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=1.3e-30  Score=276.75  Aligned_cols=192  Identities=24%  Similarity=0.357  Sum_probs=134.8

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      ++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++
T Consensus       155 ~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l  228 (347)
T 4fmz_A          155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI  228 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred             CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEc
Confidence            455555555555543322  5566666666666666664322  5666677777777777664433  666777777777


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      ++|+++ .++. + ..+++|++|++++|++++.  ..+..+++|++|++++|++++.  ..+..++              
T Consensus       229 ~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~--------------  287 (347)
T 4fmz_A          229 GNNKIT-DLSP-L-ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLS--------------  287 (347)
T ss_dssp             CSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCT--------------
T ss_pred             cCCccC-CCcc-h-hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCC--------------
Confidence            777776 4444 3 3577888888888877753  3577788888888888887754  2333333              


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID  669 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  669 (789)
                                                         .|+.|++++|++++..|..|+.+++|++|++++|++++..|  +.
T Consensus       288 -----------------------------------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~  330 (347)
T 4fmz_A          288 -----------------------------------QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA  330 (347)
T ss_dssp             -----------------------------------TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred             -----------------------------------CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence                                               34889999999998888899999999999999999997655  88


Q ss_pred             cCCCCCEEeCCCCccc
Q 042537          670 QLKSLDFLDLSQNQFV  685 (789)
Q Consensus       670 ~l~~L~~L~Ls~N~l~  685 (789)
                      .+++|+.|++++|.++
T Consensus       331 ~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          331 SLSKMDSADFANQVIK  346 (347)
T ss_dssp             GCTTCSEESSSCC---
T ss_pred             hhhccceeehhhhccc
Confidence            8999999999999886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.1e-30  Score=297.30  Aligned_cols=310  Identities=17%  Similarity=0.208  Sum_probs=209.7

Q ss_pred             CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhh
Q 042537          178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWL  257 (789)
Q Consensus       178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l  257 (789)
                      .+++.+++++|.+. .+|+.++...++|++|++++|.+++..+..|..+++|+.|+|+          +|.+++..|..|
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~----------~n~l~~~~~~~~  119 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG----------FNAIRYLPPHVF  119 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECC----------SSCCCCCCTTTT
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECC----------CCcCCCCCHHHH
Confidence            55666666666554 4455444444466666666666665555566666666666665          444444555555


Q ss_pred             hCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCcc
Q 042537          258 SRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIE  337 (789)
Q Consensus       258 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  337 (789)
                      +++++|++|+|++|.++ .+|...|.++++|++|++++|.+.                        +..|..+..+++|+
T Consensus       120 ~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~~~~l~~L~  174 (597)
T 3oja_B          120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE------------------------RIEDDTFQATTSLQ  174 (597)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC------------------------BCCTTTTTTCTTCC
T ss_pred             cCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCC------------------------CCChhhhhcCCcCc
Confidence            66666666666666665 444444555566666666555554                        34455566666777


Q ss_pred             EEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcC
Q 042537          338 VLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKF  417 (789)
Q Consensus       338 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i  417 (789)
                      +|++++|.+++.....    .++|+.|++++|.+++      +..                     +.+|+.|++++|.+
T Consensus       175 ~L~L~~N~l~~~~~~~----l~~L~~L~l~~n~l~~------l~~---------------------~~~L~~L~ls~n~l  223 (597)
T 3oja_B          175 NLQLSSNRLTHVDLSL----IPSLFHANVSYNLLST------LAI---------------------PIAVEELDASHNSI  223 (597)
T ss_dssp             EEECTTSCCSBCCGGG----CTTCSEEECCSSCCSE------EEC---------------------CTTCSEEECCSSCC
T ss_pred             EEECcCCCCCCcChhh----hhhhhhhhcccCcccc------ccC---------------------CchhheeeccCCcc
Confidence            7777777666543221    2345555555554441      111                     23455555555555


Q ss_pred             ccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcC
Q 042537          418 SESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSF  497 (789)
Q Consensus       418 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  497 (789)
                      ........    ++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++. |..
T Consensus       224 ~~~~~~~~----~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~  296 (597)
T 3oja_B          224 NVVRGPVN----VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLY  296 (597)
T ss_dssp             CEEECSCC----SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECS
T ss_pred             cccccccC----CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Ccc
Confidence            44333221    578888888888875  36788899999999999999988899999999999999999999864 566


Q ss_pred             ccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccccc
Q 042537          498 FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI  566 (789)
Q Consensus       498 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  566 (789)
                      +..+++|+.|++++|.+. .+|..+. .+++|+.|++++|++.+.   .+..+++|+.|++++|++.+.
T Consensus       297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          297 GQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             SSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEHH
T ss_pred             cccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCCCh
Confidence            778899999999999998 8888876 689999999999999854   266788999999999998754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=4.9e-32  Score=283.78  Aligned_cols=270  Identities=19%  Similarity=0.267  Sum_probs=201.1

Q ss_pred             HHHHHHHHHHhhcCc-CCCCCCCCCCCC-CCCCCCCceeeeEec--------CCCCcEEEEEcCCCCCCCCcccccCccc
Q 042537            2 EEEREALLEFKQSLV-DEYGILSSWGRE-DDKRDCCYWRGVRCS--------NTTGHVIVLDLQVLVHSEPLKGTISPSL   71 (789)
Q Consensus         2 ~~~~~~ll~~~~~~~-~~~~~~~~w~~~-~~~~~~c~w~gv~c~--------~~~~~v~~l~L~~~~~~~~l~~~l~~~~   71 (789)
                      .+|++||++||+++. |+.+.+++|... ....++|.|.|+.|.        ....+|+.|+|++    +.+. .+|+.+
T Consensus        26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~----n~l~-~lp~~l  100 (328)
T 4fcg_A           26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS----VPLP-QFPDQA  100 (328)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES----SCCS-SCCSCG
T ss_pred             chHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC----CCch-hcChhh
Confidence            578999999999995 777778899310 146789999999995        2346888899888    6665 778888


Q ss_pred             cCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhC----
Q 042537           72 LKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIID----  147 (789)
Q Consensus        72 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~----  147 (789)
                      +++++|++|++++|.++  .+|..++.+++|++|+|++|.++ .+|..|+++++|++|++++|++.+.  +|..+.    
T Consensus       101 ~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~--~p~~~~~~~~  175 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE--LPEPLASTDA  175 (328)
T ss_dssp             GGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC--CCSCSEEEC-
T ss_pred             hhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc--cChhHhhccc
Confidence            88889999999988888  47888888889999999998888 6788888888899999888776653  445444    


Q ss_pred             -----CCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchh
Q 042537          148 -----KLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEP  222 (789)
Q Consensus       148 -----~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~  222 (789)
                           ++++|++|++++|.++ .+|  ..+..+  ++|++|++++|.+++ +|+.+..+. +|++|++++|.+.+.+|..
T Consensus       176 ~~~~~~l~~L~~L~L~~n~l~-~lp--~~l~~l--~~L~~L~L~~N~l~~-l~~~l~~l~-~L~~L~Ls~n~~~~~~p~~  248 (328)
T 4fcg_A          176 SGEHQGLVNLQSLRLEWTGIR-SLP--ASIANL--QNLKSLKIRNSPLSA-LGPAIHHLP-KLEELDLRGCTALRNYPPI  248 (328)
T ss_dssp             CCCEEESTTCCEEEEEEECCC-CCC--GGGGGC--TTCCEEEEESSCCCC-CCGGGGGCT-TCCEEECTTCTTCCBCCCC
T ss_pred             hhhhccCCCCCEEECcCCCcC-cch--HhhcCC--CCCCEEEccCCCCCc-CchhhccCC-CCCEEECcCCcchhhhHHH
Confidence                 3778888888888777 344  224444  777777777777773 555544443 7777777777777777777


Q ss_pred             hhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCccc
Q 042537          223 FDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT  299 (789)
Q Consensus       223 ~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~  299 (789)
                      |.++++|+.|+++          +|.+.+.+|..++++++|++|+|++|.+.+.+|. .+.++++|+.+++..+.+.
T Consensus       249 ~~~l~~L~~L~L~----------~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          249 FGGRAPLKRLILK----------DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCCCCCCEEECT----------TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCGGGSC
T ss_pred             hcCCCCCCEEECC----------CCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCCHHHHH
Confidence            7777777777777          5556666777777777777777777777777776 4777777777777765544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6.5e-33  Score=307.05  Aligned_cols=387  Identities=18%  Similarity=0.117  Sum_probs=195.7

Q ss_pred             CCcEEEccCCCCcccCchh-hhcCCCCcEEECCCCCccEEecCCCcCcc----cchhhhhCCCCCCEEEccCCCCCCccC
Q 042537          204 KLVVLDLDSNLLQGSLLEP-FDRMVSLRTLYLGFNELEELFLGKNRLNG----TINQWLSRMYKLDALSLSGNSLTGVVT  278 (789)
Q Consensus       204 ~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~  278 (789)
                      +|++|++++|+++...... +..+++|++|+++          +|.+++    .++..+..+++|++|++++|.+.+..+
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~----------~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~   73 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLD----------DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV   73 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE----------SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEcc----------CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence            4555555555554333222 4455555555555          333332    234556666666677776666653333


Q ss_pred             hhhhhcCC----CCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhH
Q 042537          279 ESVFSELS----NLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWF  354 (789)
Q Consensus       279 ~~~~~~l~----~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~  354 (789)
                      ...+..++    +|++|++++|.++....                    ..++..+..+++|++|++++|.+++..+..+
T Consensus        74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  133 (461)
T 1z7x_W           74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLL  133 (461)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred             HHHHHHHhhCCCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence            32333344    46666666665542110                    0234556666777777777777665444443


Q ss_pred             hhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCcccc----chhcccCCC
Q 042537          355 WDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESI----SFLCSINGH  430 (789)
Q Consensus       355 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~----~~~~~~~~~  430 (789)
                      .....                     ...                     .+|+.|++++|++++..    +... ...+
T Consensus       134 ~~~l~---------------------~~~---------------------~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~  170 (461)
T 1z7x_W          134 CEGLL---------------------DPQ---------------------CRLEKLQLEYCSLSAASCEPLASVL-RAKP  170 (461)
T ss_dssp             HHHHT---------------------STT---------------------CCCCEEECTTSCCBGGGHHHHHHHH-HHCT
T ss_pred             HHHHh---------------------cCC---------------------CcceEEECCCCCCCHHHHHHHHHHH-hhCC
Confidence            32110                     001                     12222222222222211    1100 0116


Q ss_pred             CCCEEEcCCCccccCCCcccc-----cCCCCcEEEcCCCcCccc----CCccccccCcccEEEccCCeeeeeC-----Cc
Q 042537          431 KLEFLDLSNNILSGRLPDCWM-----QFDRLAVLSLANNFFSGK----IPKSMGFLHSIQTLSLYNNSLIGEL-----PS  496 (789)
Q Consensus       431 ~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~  496 (789)
                      +|++|++++|.+++..+..+.     ..++|+.|++++|.++..    ++..+..+++|++|++++|.+....     +.
T Consensus       171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  250 (461)
T 1z7x_W          171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG  250 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence            677777777777654333332     245777777777777643    3455556677777777777665421     22


Q ss_pred             CccCCCCCcEEeCCCCccccc----CchhhhhcCCCCcEEEcCCCcccccCCCCcc-----CCCcCceEeccCCcccccC
Q 042537          497 FFKSCSQLILMDLGKNGLSGE----IPTWIGEGLPKLVVLSLKSNKFHGNIPFQVC-----QLSYIQILDLSLNNISGII  567 (789)
Q Consensus       497 ~~~~l~~L~~L~ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~  567 (789)
                      .+..+++|++|++++|.+++.    ++..+. .+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++..
T Consensus       251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  329 (461)
T 1z7x_W          251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC  329 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence            233466777777777766632    344433 466677777777766543222222     1246666666666655431


Q ss_pred             CccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhc-
Q 042537          568 PKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMD-  646 (789)
Q Consensus       568 p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-  646 (789)
                      ...+..                                             ....++.|+.||+++|++++..+..+.. 
T Consensus       330 ~~~l~~---------------------------------------------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  364 (461)
T 1z7x_W          330 CSHFSS---------------------------------------------VLAQNRFLLELQISNNRLEDAGVRELCQG  364 (461)
T ss_dssp             HHHHHH---------------------------------------------HHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred             HHHHHH---------------------------------------------HHhhCCCccEEEccCCccccccHHHHHHH
Confidence            111100                                             0011223366666666665544444432 


Q ss_pred             ----cccCcEEEccCCccee----ecCcccccCCCCCEEeCCCCcccccCchhhh-----cCCCCCeEeccCCccc
Q 042537          647 ----LVGLVALNLSRNNLTG----QITPKIDQLKSLDFLDLSQNQFVGGIPSSLC-----QLSRLSVMNLSYNNLS  709 (789)
Q Consensus       647 ----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~  709 (789)
                          .++|++|+|++|++++    .+|..+..+++|++|++++|++++.....+.     ....|+.|++.++.+.
T Consensus       365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence                4466666666666654    4555556666666666666666543222221     1234555555555444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.1e-29  Score=267.64  Aligned_cols=244  Identities=22%  Similarity=0.191  Sum_probs=187.3

Q ss_pred             CCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEE
Q 042537          405 SNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLS  484 (789)
Q Consensus       405 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  484 (789)
                      ++|+.|++++|++++..+... ..+++|++|++++|.++ .+|..+.  ++|++|++++|++++..+..|..+++|++|+
T Consensus        78 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           78 QHLYALVLVNNKISKIHEKAF-SPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE  153 (332)
T ss_dssp             TTCCEEECCSSCCCEECGGGS-TTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred             CCCcEEECCCCccCccCHhHh-hCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence            344444444444444333221 12277888888888887 4444443  7888888888888877667788888888999


Q ss_pred             ccCCeee--eeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCc
Q 042537          485 LYNNSLI--GELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNN  562 (789)
Q Consensus       485 L~~n~l~--~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  562 (789)
                      +++|.++  +..+..+..+ +|++|++++|+++ .+|..++   ++|++|++++|++++..+..+..+++|++|++++|+
T Consensus       154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~  228 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ  228 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred             CCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            9888885  3667777777 8999999999988 6777653   688999999999988777888899999999999999


Q ss_pred             ccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccch
Q 042537          563 ISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPE  642 (789)
Q Consensus       563 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  642 (789)
                      +++..+..+..+++|                                                 +.|++++|+++ .+|.
T Consensus       229 l~~~~~~~~~~l~~L-------------------------------------------------~~L~L~~N~l~-~lp~  258 (332)
T 2ft3_A          229 IRMIENGSLSFLPTL-------------------------------------------------RELHLDNNKLS-RVPA  258 (332)
T ss_dssp             CCCCCTTGGGGCTTC-------------------------------------------------CEEECCSSCCC-BCCT
T ss_pred             CCcCChhHhhCCCCC-------------------------------------------------CEEECCCCcCe-ecCh
Confidence            988777677666555                                                 88999999998 7888


Q ss_pred             hhhccccCcEEEccCCcceeecCccccc------CCCCCEEeCCCCccc--ccCchhhhcCCCCCeEeccCCc
Q 042537          643 EIMDLVGLVALNLSRNNLTGQITPKIDQ------LKSLDFLDLSQNQFV--GGIPSSLCQLSRLSVMNLSYNN  707 (789)
Q Consensus       643 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~  707 (789)
                      .+..+++|++|++++|++++..+..|..      ..+|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            8999999999999999999776666654      367899999999987  6778889999999999999884

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.9e-29  Score=265.56  Aligned_cols=289  Identities=22%  Similarity=0.216  Sum_probs=184.0

Q ss_pred             CccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCC
Q 042537          335 QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSR  414 (789)
Q Consensus       335 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  414 (789)
                      +++.++++++.++.. |..+   .+.++.|++++|.+++..+. .+..+++|++|++++|.+++..|..+..        
T Consensus        32 ~l~~l~~~~~~l~~l-p~~~---~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------   98 (330)
T 1xku_A           32 HLRVVQCSDLGLEKV-PKDL---PPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAP--------   98 (330)
T ss_dssp             ETTEEECTTSCCCSC-CCSC---CTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTT--------
T ss_pred             CCeEEEecCCCcccc-CccC---CCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcC--------
Confidence            455566666555432 2221   23455555555555532222 3444444555555554444433322211        


Q ss_pred             CcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeee--
Q 042537          415 NKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIG--  492 (789)
Q Consensus       415 n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--  492 (789)
                                    +++|++|++++|.++ .+|..+.  ++|++|++++|++++..+..|..+++|++|++++|.+..  
T Consensus        99 --------------l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  161 (330)
T 1xku_A           99 --------------LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG  161 (330)
T ss_dssp             --------------CTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred             --------------CCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence                          156677777777666 3343332  567777777777776666667777777777777777743  


Q ss_pred             eCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccc
Q 042537          493 ELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLN  572 (789)
Q Consensus       493 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  572 (789)
                      ..+..+.++++|++|++++|.++ .+|..++   ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+.
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             cChhhccCCCCcCEEECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence            55666777777777777777777 5665543   6777888888887777777777778888888888877766665555


Q ss_pred             ccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcE
Q 042537          573 NFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVA  652 (789)
Q Consensus       573 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  652 (789)
                      .+++|                                                 +.|++++|+++ .+|..+..+++|++
T Consensus       238 ~l~~L-------------------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~  267 (330)
T 1xku_A          238 NTPHL-------------------------------------------------RELHLNNNKLV-KVPGGLADHKYIQV  267 (330)
T ss_dssp             GSTTC-------------------------------------------------CEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred             CCCCC-------------------------------------------------CEEECCCCcCc-cCChhhccCCCcCE
Confidence            55444                                                 77888888877 67777778888888


Q ss_pred             EEccCCcceeecCccccc------CCCCCEEeCCCCcccc--cCchhhhcCCCCCeEeccCCc
Q 042537          653 LNLSRNNLTGQITPKIDQ------LKSLDFLDLSQNQFVG--GIPSSLCQLSRLSVMNLSYNN  707 (789)
Q Consensus       653 L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~  707 (789)
                      |++++|++++..+..|..      .+.|+.|++++|.+..  ..|..|..+..++.+++++|+
T Consensus       268 L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             EECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             EECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            888888887665555543      3677788888888753  556777778888888888774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.4e-32  Score=304.44  Aligned_cols=402  Identities=20%  Similarity=0.161  Sum_probs=242.3

Q ss_pred             CCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCccc----CchhhhcCCCCcEEECCCCCccEEecCCCcCcccc
Q 042537          178 SSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGS----LLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTI  253 (789)
Q Consensus       178 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~  253 (789)
                      ++|++|++++|+++......++...++|++|++++|.++..    ++..+..+++|++|+++          +|.+.+..
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls----------~n~l~~~~   72 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR----------SNELGDVG   72 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT----------TCCCHHHH
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC----------CCcCChHH
Confidence            45666666666665444444444455777777777777642    34556667777777777          44444433


Q ss_pred             hhhh-hCCC----CCCEEEccCCCCCC----ccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCC
Q 042537          254 NQWL-SRMY----KLDALSLSGNSLTG----VVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGP  324 (789)
Q Consensus       254 ~~~l-~~l~----~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~  324 (789)
                      +..+ ..++    +|++|++++|.++.    .++. .+..+++|++|++++|.+.......+                  
T Consensus        73 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l------------------  133 (461)
T 1z7x_W           73 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLL------------------  133 (461)
T ss_dssp             HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHH------------------
T ss_pred             HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHH------------------
Confidence            3333 3344    58888888887763    2232 56777788888888777653221111                  


Q ss_pred             CCchh-ccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCC
Q 042537          325 HFPKW-LQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPL  403 (789)
Q Consensus       325 ~~~~~-l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~  403 (789)
                        ... ....++|++|++++|++++.....+...                      +..++.|++|++++|.+....+. 
T Consensus       134 --~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~----------------------l~~~~~L~~L~L~~n~i~~~~~~-  188 (461)
T 1z7x_W          134 --CEGLLDPQCRLEKLQLEYCSLSAASCEPLASV----------------------LRAKPDFKELTVSNNDINEAGVR-  188 (461)
T ss_dssp             --HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH----------------------HHHCTTCCEEECCSSBCHHHHHH-
T ss_pred             --HHHHhcCCCcceEEECCCCCCCHHHHHHHHHH----------------------HhhCCCCCEEECcCCCcchHHHH-
Confidence              011 1123456666666666554433222211                      01111122222222222110000 


Q ss_pred             CCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccC----CCcccccCCCCcEEEcCCCcCcccC-----Cccc
Q 042537          404 PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGR----LPDCWMQFDRLAVLSLANNFFSGKI-----PKSM  474 (789)
Q Consensus       404 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~  474 (789)
                                      .+........++|++|++++|.+++.    ++..+..+++|+.|++++|.+....     +..+
T Consensus       189 ----------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~  252 (461)
T 1z7x_W          189 ----------------VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL  252 (461)
T ss_dssp             ----------------HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             ----------------HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence                            00000000114677777777776643    3556667778888888888776532     2223


Q ss_pred             cccCcccEEEccCCeeeee----CCcCccCCCCCcEEeCCCCcccccCchhhhh----cCCCCcEEEcCCCccccc----
Q 042537          475 GFLHSIQTLSLYNNSLIGE----LPSFFKSCSQLILMDLGKNGLSGEIPTWIGE----GLPKLVVLSLKSNKFHGN----  542 (789)
Q Consensus       475 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~----~l~~L~~L~L~~n~l~~~----  542 (789)
                      ..+++|++|++++|.++..    ++..+..+++|++|++++|.+.+..+..+..    ..++|++|++++|.+++.    
T Consensus       253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  332 (461)
T 1z7x_W          253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH  332 (461)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence            3467888888888888753    4556777888899999998887544433332    236899999999998765    


Q ss_pred             CCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccc
Q 042537          543 IPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRST  622 (789)
Q Consensus       543 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (789)
                      ++..+..+++|++|++++|++++..+..+...  +                                          ...
T Consensus       333 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~--l------------------------------------------~~~  368 (461)
T 1z7x_W          333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQG--L------------------------------------------GQP  368 (461)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH--H------------------------------------------TST
T ss_pred             HHHHHhhCCCccEEEccCCccccccHHHHHHH--H------------------------------------------cCC
Confidence            34556677999999999998876544333221  0                                          011


Q ss_pred             cCceeEEEcccCcccc----ccchhhhccccCcEEEccCCcceeecCcccc-----cCCCCCEEeCCCCcccccCchhhh
Q 042537          623 LGLVKILDFSMNKLSG----TIPEEIMDLVGLVALNLSRNNLTGQITPKID-----QLKSLDFLDLSQNQFVGGIPSSLC  693 (789)
Q Consensus       623 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~l~  693 (789)
                      .+.|+.|++++|++++    .+|..+..+++|++|+|++|++++.....+.     ...+|+.|++.++.+....++.+.
T Consensus       369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~  448 (461)
T 1z7x_W          369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ  448 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHH
T ss_pred             CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHH
Confidence            3456999999999986    7888999999999999999999865322221     245789999998888766555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.1e-28  Score=259.84  Aligned_cols=265  Identities=23%  Similarity=0.295  Sum_probs=126.6

Q ss_pred             CCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCc
Q 042537          386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF  465 (789)
Q Consensus       386 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  465 (789)
                      ++.++++++.++..+...++.++.|++++|++++..+.... .+++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus        33 l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ  111 (330)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhc-cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence            45555555555443333344445555555544443332111 12455555555555554445555555555555555555


Q ss_pred             CcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccc--cCchhhhhcCCCCcEEEcCCCcccccC
Q 042537          466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSG--EIPTWIGEGLPKLVVLSLKSNKFHGNI  543 (789)
Q Consensus       466 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~  543 (789)
                      ++ .+|..+.  ++|++|++++|.+.+..+..|.++++|++|++++|.+..  ..+..+ ..+++|++|++++|+++. +
T Consensus       112 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~-l  186 (330)
T 1xku_A          112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITT-I  186 (330)
T ss_dssp             CS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCCS-C
T ss_pred             CC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc-cCCCCcCEEECCCCcccc-C
Confidence            55 2333222  445555555555554444445555555555555555531  222222 245555555555555542 2


Q ss_pred             CCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccccccc
Q 042537          544 PFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTL  623 (789)
Q Consensus       544 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  623 (789)
                      |..+.  ++|++|++++|++++..|..+..+++|                                              
T Consensus       187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L----------------------------------------------  218 (330)
T 1xku_A          187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNL----------------------------------------------  218 (330)
T ss_dssp             CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC----------------------------------------------
T ss_pred             Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCC----------------------------------------------
Confidence            32222  455555555555554444444333333                                              


Q ss_pred             CceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhc------CCC
Q 042537          624 GLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQ------LSR  697 (789)
Q Consensus       624 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~  697 (789)
                         +.|++++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|..      .+.
T Consensus       219 ---~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~  294 (330)
T 1xku_A          219 ---AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS  294 (330)
T ss_dssp             ---CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred             ---CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence               45555555555444444555555555555555555 44445555555555555555555444444422      244


Q ss_pred             CCeEeccCCcc
Q 042537          698 LSVMNLSYNNL  708 (789)
Q Consensus       698 L~~L~ls~N~l  708 (789)
                      |+.+++++|++
T Consensus       295 l~~l~l~~N~~  305 (330)
T 1xku_A          295 YSGVSLFSNPV  305 (330)
T ss_dssp             CSEEECCSSSS
T ss_pred             ccceEeecCcc
Confidence            45555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.2e-28  Score=259.57  Aligned_cols=265  Identities=21%  Similarity=0.258  Sum_probs=159.8

Q ss_pred             CCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCc
Q 042537          386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF  465 (789)
Q Consensus       386 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  465 (789)
                      ++.++++++.++..+...+++++.|++++|.+.+..+... ..+++|++|++++|++++..|.+|.++++|++|++++|+
T Consensus        35 l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  113 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH  113 (332)
T ss_dssp             TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence            4555555555554433334555556666665554433221 122667777777777666666666667777777777776


Q ss_pred             CcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccc--cCchhhhhcCCCCcEEEcCCCcccccC
Q 042537          466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSG--EIPTWIGEGLPKLVVLSLKSNKFHGNI  543 (789)
Q Consensus       466 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~  543 (789)
                      ++ .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.++.  ..+..+. .+ +|+.|++++|++++ +
T Consensus       114 l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l-~L~~L~l~~n~l~~-l  187 (332)
T 2ft3_A          114 LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD-GL-KLNYLRISEAKLTG-I  187 (332)
T ss_dssp             CC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC-SC-CCSCCBCCSSBCSS-C
T ss_pred             CC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc-CC-ccCEEECcCCCCCc-c
Confidence            66 3343333  566777777777665555556666777777777776642  2232222 34 66666777666664 3


Q ss_pred             CCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccccccc
Q 042537          544 PFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTL  623 (789)
Q Consensus       544 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  623 (789)
                      |..+.  ++|++|++++|.+++..+..+..+++|                                              
T Consensus       188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L----------------------------------------------  219 (332)
T 2ft3_A          188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKL----------------------------------------------  219 (332)
T ss_dssp             CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTC----------------------------------------------
T ss_pred             Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCC----------------------------------------------
Confidence            43332  566666666666666555555544444                                              


Q ss_pred             CceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcC------CC
Q 042537          624 GLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL------SR  697 (789)
Q Consensus       624 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~  697 (789)
                         +.|++++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|...      +.
T Consensus       220 ---~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  295 (332)
T 2ft3_A          220 ---YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY  295 (332)
T ss_dssp             ---SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred             ---CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence               66677777776666666677777777777777776 566666777777777777777766655555432      45


Q ss_pred             CCeEeccCCccc
Q 042537          698 LSVMNLSYNNLS  709 (789)
Q Consensus       698 L~~L~ls~N~l~  709 (789)
                      |+.+++++|++.
T Consensus       296 l~~L~l~~N~~~  307 (332)
T 2ft3_A          296 YNGISLFNNPVP  307 (332)
T ss_dssp             BSEEECCSSSSC
T ss_pred             ccceEeecCccc
Confidence            667777777665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=3.1e-29  Score=260.95  Aligned_cols=251  Identities=22%  Similarity=0.242  Sum_probs=202.8

Q ss_pred             EEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCccc--CCccccccCcccEEEcc
Q 042537          409 VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGK--IPKSMGFLHSIQTLSLY  486 (789)
Q Consensus       409 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~  486 (789)
                      .++.+++.++..+....    +++++|++++|+++...+..|.++++|++|++++|+++..  .+..+..+++|++|+++
T Consensus        11 ~l~c~~~~l~~ip~~~~----~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIP----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             EEECCSSCCSSCCSCCC----TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             EEEcCCCCcccCCCCCC----CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            34444444444333221    5788888888888865556688889999999999988743  25666778899999999


Q ss_pred             CCeeeeeCCcCccCCCCCcEEeCCCCcccccCch-hhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccc
Q 042537          487 NNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPT-WIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISG  565 (789)
Q Consensus       487 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  565 (789)
                      +|.+.. +|..+..+++|++|++++|+++ .++. ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++
T Consensus        87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             SCSEEE-EEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCcccc-ChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            999884 5566888999999999999998 4443 344478999999999999988888888899999999999999886


Q ss_pred             -cCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhh
Q 042537          566 -IIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEI  644 (789)
Q Consensus       566 -~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  644 (789)
                       ..|..+..+++|                                                 +.|++++|++++..|..|
T Consensus       165 ~~~~~~~~~l~~L-------------------------------------------------~~L~Ls~n~l~~~~~~~~  195 (306)
T 2z66_A          165 NFLPDIFTELRNL-------------------------------------------------TFLDLSQCQLEQLSPTAF  195 (306)
T ss_dssp             GEECSCCTTCTTC-------------------------------------------------CEEECTTSCCCEECTTTT
T ss_pred             ccchhHHhhCcCC-------------------------------------------------CEEECCCCCcCCcCHHHh
Confidence             456666555555                                                 899999999998888899


Q ss_pred             hccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC-CCCeEeccCCcccccCCC
Q 042537          645 MDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS-RLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       645 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~  714 (789)
                      ..+++|++|+|++|++++..+..+..+++|+.|||++|++++..|..+..++ +|++|++++|++.|.++.
T Consensus       196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            9999999999999999987777889999999999999999999999998884 899999999999887654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=4.6e-28  Score=266.50  Aligned_cols=233  Identities=23%  Similarity=0.231  Sum_probs=197.3

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      +++++|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57888888888888878888888899999999999988888888888889999999999988777777888899999999


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCC-CcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKS-NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAIT  588 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  588 (789)
                      ++|++. .+|...+..+++|+.|++++ |.+....+..+.++++|++|++++|++++. | .+..+              
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l--------------  217 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPL--------------  217 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTC--------------
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccc--------------
Confidence            999988 67766666788999999988 455544455688899999999999988754 2 23333              


Q ss_pred             cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537          589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI  668 (789)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  668 (789)
                                                         ++|+.|++++|++++..|..|.++++|+.|+|++|++++..|..|
T Consensus       218 -----------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  262 (452)
T 3zyi_A          218 -----------------------------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF  262 (452)
T ss_dssp             -----------------------------------TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             -----------------------------------ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh
Confidence                                               345899999999998889999999999999999999998889999


Q ss_pred             ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537          669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  714 (789)
                      ..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+..
T Consensus       263 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            9999999999999999988888889999999999999999877653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.6e-29  Score=265.15  Aligned_cols=278  Identities=18%  Similarity=0.168  Sum_probs=212.2

Q ss_pred             CCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCc
Q 042537          386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF  465 (789)
Q Consensus       386 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  465 (789)
                      ....+++++.++..+...+++++.|++++|++++..+... ..+++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus        33 ~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           33 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHh-ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence            4456677777776655556778888888888776554222 223788899999998887778888888899999999998


Q ss_pred             CcccCCccccccCcccEEEccCCeeeeeCC-cCccCCCCCcEEeCCCCc-ccccCchhhhhcCCCCcEEEcCCCcccccC
Q 042537          466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELP-SFFKSCSQLILMDLGKNG-LSGEIPTWIGEGLPKLVVLSLKSNKFHGNI  543 (789)
Q Consensus       466 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  543 (789)
                      +++..+..|..+++|++|++++|++++..+ ..|..+++|++|++++|. +. .++...+.++++|++|++++|++.+..
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~  190 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYE  190 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccC
Confidence            886655558888889999999998885544 478888899999998884 55 554444447888999999999888888


Q ss_pred             CCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccccccc
Q 042537          544 PFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTL  623 (789)
Q Consensus       544 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  623 (789)
                      |..+..+++|++|++++|.+....+..+..                                                 +
T Consensus       191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------------~  221 (353)
T 2z80_A          191 PKSLKSIQNVSHLILHMKQHILLLEIFVDV-------------------------------------------------T  221 (353)
T ss_dssp             TTTTTTCSEEEEEEEECSCSTTHHHHHHHH-------------------------------------------------T
T ss_pred             HHHHhccccCCeecCCCCccccchhhhhhh-------------------------------------------------c
Confidence            888888889999999888876332222222                                                 3


Q ss_pred             CceeEEEcccCccccccchhhh---ccccCcEEEccCCccee----ecCcccccCCCCCEEeCCCCcccccCchhhhcCC
Q 042537          624 GLVKILDFSMNKLSGTIPEEIM---DLVGLVALNLSRNNLTG----QITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS  696 (789)
Q Consensus       624 ~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  696 (789)
                      +.|+.|++++|++++..+..+.   ....++.++|+++.+++    .+|..+..+++|+.|++++|+++...+..|..++
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~  301 (353)
T 2z80_A          222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT  301 (353)
T ss_dssp             TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCC
Confidence            4559999999999876555443   35678888888888876    3678889999999999999999954444468999


Q ss_pred             CCCeEeccCCcccccCCC
Q 042537          697 RLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       697 ~L~~L~ls~N~l~~~~p~  714 (789)
                      +|++|++++|++.|.+|.
T Consensus       302 ~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          302 SLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             TCCEEECCSSCBCCCHHH
T ss_pred             CCCEEEeeCCCccCcCCC
Confidence            999999999999998874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=8.8e-28  Score=263.23  Aligned_cols=233  Identities=23%  Similarity=0.242  Sum_probs=191.4

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      ++++.|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            56778888888888777788888888888888888888777788888888888888888888777777888888888888


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCC-cccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSN-KFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAIT  588 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  588 (789)
                      ++|++. .++...+..+++|++|++++| .+....+..|.++++|++|++++|+++.. | .+..               
T Consensus       144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~---------------  205 (440)
T 3zyj_A          144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTP---------------  205 (440)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTT---------------
T ss_pred             CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCC---------------
Confidence            888887 666655557888888888884 45544455788888899999999888743 3 2333               


Q ss_pred             cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537          589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI  668 (789)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  668 (789)
                                                        ++.|+.|++++|++++..|..|.++++|+.|+|++|++++..+..|
T Consensus       206 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  251 (440)
T 3zyj_A          206 ----------------------------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF  251 (440)
T ss_dssp             ----------------------------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred             ----------------------------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh
Confidence                                              3345899999999998888999999999999999999998888899


Q ss_pred             ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537          669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  714 (789)
                      ..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+..
T Consensus       252 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            9999999999999999988888889999999999999999876653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=3.5e-28  Score=250.11  Aligned_cols=250  Identities=19%  Similarity=0.109  Sum_probs=190.1

Q ss_pred             CEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCC
Q 042537          433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN  512 (789)
Q Consensus       433 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n  512 (789)
                      +.++.+++.++ .+|..+  .++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            56777777776 444433  357788888888888777677778888888888888888777778888888888888888


Q ss_pred             c-ccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCc
Q 042537          513 G-LSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNY  591 (789)
Q Consensus       513 ~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~  591 (789)
                      . +. .++...+..+++|++|++++|++++..+..+.++++|++|++++|++++..+..|..+++|              
T Consensus        91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------  155 (285)
T 1ozn_A           91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------  155 (285)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------
Confidence            6 65 5533333468888888888888887777778888888888888888887666656555555              


Q ss_pred             ccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccC
Q 042537          592 TFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQL  671 (789)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  671 (789)
                                                         +.|++++|++++..+..|..+++|++|++++|++++..|..+..+
T Consensus       156 -----------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  200 (285)
T 1ozn_A          156 -----------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (285)
T ss_dssp             -----------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             -----------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence                                               888888888886666678889999999999999998888889999


Q ss_pred             CCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCC
Q 042537          672 KSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGL  735 (789)
Q Consensus       672 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  735 (789)
                      ++|+.|++++|++++..+..+..+++|++|++++|++.+.++....+..+.......+...|..
T Consensus       201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~  264 (285)
T 1ozn_A          201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL  264 (285)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred             ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence            9999999999999987778888999999999999999887775433333333333445455543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.8e-28  Score=251.98  Aligned_cols=276  Identities=23%  Similarity=0.256  Sum_probs=225.2

Q ss_pred             CEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccC--CCcccccCCCCcEEEcCCC
Q 042537          387 SSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGR--LPDCWMQFDRLAVLSLANN  464 (789)
Q Consensus       387 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n  464 (789)
                      +.++++++.++..+...+++++.|++++|++....+..+ ..+++|++|++++|.++..  .+..+..+++|++|++++|
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHh-hccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            456666666666655566788888888888876554332 2338899999999998743  3667778999999999999


Q ss_pred             cCcccCCccccccCcccEEEccCCeeeeeCC-cCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccc-c
Q 042537          465 FFSGKIPKSMGFLHSIQTLSLYNNSLIGELP-SFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHG-N  542 (789)
Q Consensus       465 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~  542 (789)
                      .+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+ .
T Consensus        89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGE
T ss_pred             ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCcccccc
Confidence            998 466678899999999999999987665 6789999999999999999866655554 78999999999999987 5


Q ss_pred             CCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccc
Q 042537          543 IPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRST  622 (789)
Q Consensus       543 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (789)
                      .|..+..+++|++|++++|++++..|..+..+++|                                             
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------------------  201 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL---------------------------------------------  201 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------------
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC---------------------------------------------
Confidence            78899999999999999999998888777766655                                             


Q ss_pred             cCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCC-CCCEEeCCCCcccccCc--hhhhcCCCCC
Q 042537          623 LGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLK-SLDFLDLSQNQFVGGIP--SSLCQLSRLS  699 (789)
Q Consensus       623 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~  699 (789)
                          +.|++++|++++..+..+..+++|++|+|++|++++..|..+..++ +|+.|+|++|.+++..+  .....+...+
T Consensus       202 ----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~  277 (306)
T 2z66_A          202 ----QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR  277 (306)
T ss_dssp             ----CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTG
T ss_pred             ----CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhh
Confidence                8999999999988888899999999999999999999999999984 99999999999986532  2223344555


Q ss_pred             eEeccCCcccccCCC
Q 042537          700 VMNLSYNNLSGKIPL  714 (789)
Q Consensus       700 ~L~ls~N~l~~~~p~  714 (789)
                      .+.+..+.+.|..|.
T Consensus       278 ~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          278 QLLVEVERMECATPS  292 (306)
T ss_dssp             GGBSCGGGCBEEESG
T ss_pred             hhhccccccccCCch
Confidence            667777888877774

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.2e-28  Score=258.67  Aligned_cols=277  Identities=21%  Similarity=0.209  Sum_probs=233.0

Q ss_pred             CCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEE
Q 042537          405 SNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLS  484 (789)
Q Consensus       405 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  484 (789)
                      +.....+.+++.++..+....    ++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|+
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTCC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCeEeeCCCCCccccccccc----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            344568889998888765433    6899999999999987777899999999999999999988888999999999999


Q ss_pred             ccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCch-hhhhcCCCCcEEEcCCC-cccccCCCCccCCCcCceEeccCCc
Q 042537          485 LYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPT-WIGEGLPKLVVLSLKSN-KFHGNIPFQVCQLSYIQILDLSLNN  562 (789)
Q Consensus       485 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~  562 (789)
                      +++|++++..+..|.++++|++|++++|+++ .+|. ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            9999999766666899999999999999998 7776 44557999999999999 5777777889999999999999999


Q ss_pred             ccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccch
Q 042537          563 ISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPE  642 (789)
Q Consensus       563 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  642 (789)
                      +++..|..+..+++|                                                 +.|++++|+++...+.
T Consensus       186 l~~~~~~~l~~l~~L-------------------------------------------------~~L~l~~n~l~~~~~~  216 (353)
T 2z80_A          186 LQSYEPKSLKSIQNV-------------------------------------------------SHLILHMKQHILLLEI  216 (353)
T ss_dssp             CCEECTTTTTTCSEE-------------------------------------------------EEEEEECSCSTTHHHH
T ss_pred             cCccCHHHHhccccC-------------------------------------------------CeecCCCCccccchhh
Confidence            998888777666555                                                 9999999999854444


Q ss_pred             hhhccccCcEEEccCCcceeecCcccc---cCCCCCEEeCCCCcccc----cCchhhhcCCCCCeEeccCCcccccCCCC
Q 042537          643 EIMDLVGLVALNLSRNNLTGQITPKID---QLKSLDFLDLSQNQFVG----GIPSSLCQLSRLSVMNLSYNNLSGKIPLG  715 (789)
Q Consensus       643 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  715 (789)
                      .+..+++|++|++++|++++..+..+.   ....++.++|++|.+++    .+|..+..+++|++|++++|+++ .+|..
T Consensus       217 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~  295 (353)
T 2z80_A          217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDG  295 (353)
T ss_dssp             HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTT
T ss_pred             hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHH
Confidence            556789999999999999976655443   46789999999999886    47888999999999999999998 66764


Q ss_pred             --CccccccccccCCCCCCCCCC
Q 042537          716 --TQLQSFNASVYAGNPELCGLP  736 (789)
Q Consensus       716 --~~~~~~~~~~~~~n~~lc~~~  736 (789)
                        ..+..+....+.+||+.|+|+
T Consensus       296 ~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          296 IFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHhcCCCCCEEEeeCCCccCcCC
Confidence              456677778899999999886

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.9e-27  Score=260.60  Aligned_cols=253  Identities=23%  Similarity=0.224  Sum_probs=220.2

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      .....++.++..++ .+|..+.  ++++.|+|++|++++..+..|..+++|++|++++|.+.++.+..|.++++|++|++
T Consensus        43 ~~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           43 NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TTSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            34667888888887 5666554  68999999999999998899999999999999999999998899999999999999


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCc-ccccCCccccccccCcccCCCccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNN-ISGIIPKCLNNFTGMAQKSSSNLAIT  588 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~l~~~~~~~~  588 (789)
                      ++|+++ .+|...+..+++|++|++++|++....+..|..+++|+.|++++|+ +....+..|.++++|           
T Consensus       120 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-----------  187 (440)
T 3zyj_A          120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-----------  187 (440)
T ss_dssp             CSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-----------
T ss_pred             CCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-----------
Confidence            999999 7777656689999999999999998888889999999999999954 544444456555544           


Q ss_pred             cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537          589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI  668 (789)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  668 (789)
                                                            +.|++++|+++ .+| .+..+++|++|+|++|++++..|..|
T Consensus       188 --------------------------------------~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~  227 (440)
T 3zyj_A          188 --------------------------------------RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSF  227 (440)
T ss_dssp             --------------------------------------CEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred             --------------------------------------CeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhh
Confidence                                                  99999999999 566 48899999999999999999889999


Q ss_pred             ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCC-CccccccccccCCCCCCCCCCC
Q 042537          669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG-TQLQSFNASVYAGNPELCGLPL  737 (789)
Q Consensus       669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~l  737 (789)
                      ..+++|+.|+|++|++++..|..|..+++|++|++++|++++..+.. ..+..+....+.+||+.|+|.+
T Consensus       228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            99999999999999999999999999999999999999999655543 3456677778999999999864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.4e-27  Score=260.78  Aligned_cols=252  Identities=23%  Similarity=0.218  Sum_probs=219.3

Q ss_pred             CCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCC
Q 042537          431 KLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLG  510 (789)
Q Consensus       431 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls  510 (789)
                      ....++.++..++ .+|..+.  ++++.|++++|++++..+..|..+++|++|++++|.+.++.+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            4567888888887 5665554  689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCC-cccccCCccccccccCcccCCCcccccc
Q 042537          511 KNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLN-NISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       511 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      +|+++ .+|...+..+++|++|++++|++....+..+.++++|+.|++++| .+....+..|..+++|            
T Consensus       132 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L------------  198 (452)
T 3zyi_A          132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL------------  198 (452)
T ss_dssp             SSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC------------
T ss_pred             CCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC------------
Confidence            99999 777766668999999999999999888888999999999999995 4544444455555444            


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID  669 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  669 (789)
                                                           +.|++++|++++ +| .+..+++|++|+|++|++++..|..|.
T Consensus       199 -------------------------------------~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~  239 (452)
T 3zyi_A          199 -------------------------------------KYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFH  239 (452)
T ss_dssp             -------------------------------------CEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred             -------------------------------------CEEECCCCcccc-cc-cccccccccEEECcCCcCcccCccccc
Confidence                                                 999999999995 45 488999999999999999999999999


Q ss_pred             cCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCC-CccccccccccCCCCCCCCCCC
Q 042537          670 QLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG-TQLQSFNASVYAGNPELCGLPL  737 (789)
Q Consensus       670 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~l  737 (789)
                      .+++|+.|+|++|++++..|..|..+++|++|++++|++++..+.. ..+..+....+.+||+.|+|.+
T Consensus       240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            9999999999999999999999999999999999999999655543 3456677778999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=3.3e-30  Score=294.95  Aligned_cols=189  Identities=17%  Similarity=0.164  Sum_probs=97.2

Q ss_pred             CCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCC---CCCCcccc------------cC
Q 042537           34 CCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFS---GSRIPEFI------------GS   98 (789)
Q Consensus        34 ~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~------------~~   98 (789)
                      |++|.++.+.  ..  ..+.+..     ......+..+.++++|++|+++++...   +. +|..+            ..
T Consensus        41 ck~W~~~~~~--~~--~~l~~~~-----~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~  110 (592)
T 3ogk_B           41 CRRWFKIDSE--TR--EHVTMAL-----CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNN  110 (592)
T ss_dssp             CHHHHHHHHH--HC--CEEEESC-----GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHH
T ss_pred             hHHHHHhhhc--cc--cEEEEee-----ccccChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhh
Confidence            5589988543  11  2333333     222333455678889999999875321   11 22111            26


Q ss_pred             CCCCCEEecCCCcCCCCCCccccCC--CCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCcccc--ccccc
Q 042537           99 LNKLRYLSLSSAEFEGPIPSQLGNL--SRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSD--LLHLN  174 (789)
Q Consensus        99 l~~L~~L~Ls~n~i~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~~  174 (789)
                      +++|++|+|++|.+++..+..+...  .+|++|+|++|.-.....++....++++|++|++++|.+.+.....  .....
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  190 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH  190 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence            7788888888877765555555543  3477888777752222224444556777777777777654331100  01112


Q ss_pred             cCCCCCCeEEccCCCCCCCchh---HHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECC
Q 042537          175 FSTSSLGALYLFENSLSSSIYP---WLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLG  235 (789)
Q Consensus       175 l~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  235 (789)
                      +  ++|++|++++|.+++.-..   .++...++|++|++++|.+.+ .+..+..+++|+.|+++
T Consensus       191 ~--~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          191 N--TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             C--CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred             C--CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence            2  5555555555555421111   112222355555555555443 33445555555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=8.5e-28  Score=251.60  Aligned_cols=226  Identities=19%  Similarity=0.250  Sum_probs=195.1

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      +.++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            67888999999888 67777888899999999999988 77888888999999999999888 67888888999999999


Q ss_pred             CCCcccccCchhhh--------hcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccC
Q 042537          510 GKNGLSGEIPTWIG--------EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKS  581 (789)
Q Consensus       510 s~n~l~~~~p~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  581 (789)
                      ++|++.+.+|..+.        .++++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..+++|    
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L----  231 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL----  231 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC----
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC----
Confidence            99888878887664        24889999999999998 778888899999999999999885 44456555554    


Q ss_pred             CCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcce
Q 042537          582 SSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLT  661 (789)
Q Consensus       582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  661 (789)
                                                                   +.|++++|++.+.+|..|+.+++|++|+|++|++.
T Consensus       232 ---------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          232 ---------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             ---------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred             ---------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence                                                         88999999999899999999999999999999999


Q ss_pred             eecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccc
Q 042537          662 GQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS  709 (789)
Q Consensus       662 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  709 (789)
                      +.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus       267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            899999999999999999999999999999999999999999877664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.3e-27  Score=245.96  Aligned_cols=252  Identities=21%  Similarity=0.222  Sum_probs=201.0

Q ss_pred             EEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCC
Q 042537          409 VLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNN  488 (789)
Q Consensus       409 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  488 (789)
                      .++.+++.++..+....    +++++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus        15 ~~~c~~~~l~~ip~~~~----~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGIP----AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             EEECCSSCCSSCCTTCC----TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCcCCcccCCcCCC----CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            44455554444332221    67888888888888777778888999999999999998888888888999999999999


Q ss_pred             e-eeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccC
Q 042537          489 S-LIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGII  567 (789)
Q Consensus       489 ~-l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  567 (789)
                      . +....+..|..+++|++|++++|.+++..|..+ ..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            7 777768888889999999999999984444444 47899999999999998777777888999999999999988776


Q ss_pred             CccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhcc
Q 042537          568 PKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDL  647 (789)
Q Consensus       568 p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  647 (789)
                      +..+..+++|                                                 +.|++++|++++..|..|..+
T Consensus       170 ~~~~~~l~~L-------------------------------------------------~~L~l~~n~l~~~~~~~~~~l  200 (285)
T 1ozn_A          170 ERAFRGLHSL-------------------------------------------------DRLLLHQNRVAHVHPHAFRDL  200 (285)
T ss_dssp             TTTTTTCTTC-------------------------------------------------CEEECCSSCCCEECTTTTTTC
T ss_pred             HHHhcCcccc-------------------------------------------------CEEECCCCcccccCHhHccCc
Confidence            6666665555                                                 899999999998889999999


Q ss_pred             ccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCC
Q 042537          648 VGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG  715 (789)
Q Consensus       648 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  715 (789)
                      ++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .-...++.+..+.+.+.|..|..
T Consensus       201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            99999999999999766677999999999999999998654421 11233555667889999988863

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.3e-28  Score=281.68  Aligned_cols=87  Identities=13%  Similarity=0.047  Sum_probs=49.5

Q ss_pred             CceeEEEcccC--ccccccchhhhc-cccCcEEEccCCcceee-cCcccccCCCCCEEeCCCCccccc-CchhhhcCCCC
Q 042537          624 GLVKILDFSMN--KLSGTIPEEIMD-LVGLVALNLSRNNLTGQ-ITPKIDQLKSLDFLDLSQNQFVGG-IPSSLCQLSRL  698 (789)
Q Consensus       624 ~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L  698 (789)
                      +.|+.|++++|  .+++..+..+.. +++|++|+|++|++++. ++..+..+++|+.|+|++|.+++. ++..+..+++|
T Consensus       436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L  515 (592)
T 3ogk_B          436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL  515 (592)
T ss_dssp             TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSC
T ss_pred             CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCcc
Confidence            33466666533  245444444433 56677777777766642 333345666677777777766543 23334556677


Q ss_pred             CeEeccCCcccc
Q 042537          699 SVMNLSYNNLSG  710 (789)
Q Consensus       699 ~~L~ls~N~l~~  710 (789)
                      ++|++++|+++.
T Consensus       516 ~~L~ls~n~it~  527 (592)
T 3ogk_B          516 RYLWVQGYRASM  527 (592)
T ss_dssp             CEEEEESCBCCT
T ss_pred             CeeECcCCcCCH
Confidence            777777776553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=6.3e-29  Score=284.48  Aligned_cols=248  Identities=17%  Similarity=0.149  Sum_probs=147.4

Q ss_pred             CCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCC-CC-C------------cccccCC
Q 042537           34 CCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSG-SR-I------------PEFIGSL   99 (789)
Q Consensus        34 ~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~-~~-~------------~~~~~~l   99 (789)
                      |++|.++..    ...+++++..+.   .  ......+.++++|++|+++++.... .. .            +.....+
T Consensus        34 ck~W~~~~~----~~~~~l~~~~~~---~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~  104 (594)
T 2p1m_B           34 CKSWYEIER----WCRRKVFIGNCY---A--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY  104 (594)
T ss_dssp             CHHHHHHHH----HHCCEEEESSTT---S--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC
T ss_pred             HHHHHHhhh----hhceEEeecccc---c--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC
Confidence            678988832    123456666521   1  1112356788999999999875211 00 1            1223568


Q ss_pred             CCCCEEecCCCcCCCCCCcccc-CCCCCcEEeccCc-cCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCC
Q 042537          100 NKLRYLSLSSAEFEGPIPSQLG-NLSRLKYLDLSYI-NLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFST  177 (789)
Q Consensus       100 ~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  177 (789)
                      ++|++|+|++|.+++..+..+. .+++|++|+|++| .++. ..++..+.++++|++|++++|.+++..+..+....-..
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            8999999999998876666665 6899999999998 4433 22556666899999999999987664432222111112


Q ss_pred             CCCCeEEccCCC--CCCCchhHHHhhcCCCcEEEccCC-CCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccch
Q 042537          178 SSLGALYLFENS--LSSSIYPWLFNISSKLVVLDLDSN-LLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTIN  254 (789)
Q Consensus       178 ~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~  254 (789)
                      ++|++|++++|.  +.......+....++|++|++++| .+.+ .+..+..+++|+.|+++.+..   ++..+.+.+ ++
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~-l~  258 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTA---EVRPDVYSG-LS  258 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCC---CCCHHHHHH-HH
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccC---ccchhhHHH-HH
Confidence            688888888776  221222223333457888888777 3333 566677777777777664321   122333333 23


Q ss_pred             hhhhCCCCCCEE-EccCCCCCCccChhhhhcCCCCcEEEccCCcc
Q 042537          255 QWLSRMYKLDAL-SLSGNSLTGVVTESVFSELSNLKALHLDDNSF  298 (789)
Q Consensus       255 ~~l~~l~~L~~L-~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i  298 (789)
                      ..+.++++|+.| .+.+.... .++. .+..+++|++|++++|.+
T Consensus       259 ~~l~~~~~L~~Ls~~~~~~~~-~l~~-~~~~~~~L~~L~L~~~~l  301 (594)
T 2p1m_B          259 VALSGCKELRCLSGFWDAVPA-YLPA-VYSVCSRLTTLNLSYATV  301 (594)
T ss_dssp             HHHHTCTTCCEEECCBTCCGG-GGGG-GHHHHTTCCEEECTTCCC
T ss_pred             HHHhcCCCcccccCCcccchh-hHHH-HHHhhCCCCEEEccCCCC
Confidence            356667777776 33332221 2222 234556666666666553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=3.6e-25  Score=226.41  Aligned_cols=229  Identities=20%  Similarity=0.151  Sum_probs=169.7

Q ss_pred             EEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcc
Q 042537          435 LDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGL  514 (789)
Q Consensus       435 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  514 (789)
                      ++..+..++ .+|..+.  ++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|++
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            444444444 3444332  3577777777777766666677777777777777777766666777777777777777777


Q ss_pred             cccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccccc-CCccccccccCcccCCCccccccCccc
Q 042537          515 SGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI-IPKCLNNFTGMAQKSSSNLAITSNYTF  593 (789)
Q Consensus       515 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~~~~~~~~~~~~~  593 (789)
                      ++..+..+ .++++|++|++++|++.+..+..+..+++|++|++++|.+++. +|..+..+++|                
T Consensus        89 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L----------------  151 (276)
T 2z62_A           89 QSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL----------------  151 (276)
T ss_dssp             CEECTTTT-TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC----------------
T ss_pred             CccChhhh-cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC----------------
Confidence            73333333 3677778888887777766666677888888888888888764 46666665555                


Q ss_pred             ccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCc----EEEccCCcceeecCcccc
Q 042537          594 ERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLV----ALNLSRNNLTGQITPKID  669 (789)
Q Consensus       594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~  669 (789)
                                                       +.|++++|++++..+..|..+++|+    +|++++|++++..+..+.
T Consensus       152 ---------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~  198 (276)
T 2z62_A          152 ---------------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK  198 (276)
T ss_dssp             ---------------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred             ---------------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC
Confidence                                             8888888888877777888888777    899999999966555554


Q ss_pred             cCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCc
Q 042537          670 QLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQ  717 (789)
Q Consensus       670 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~  717 (789)
                       ..+|+.|++++|++++..+..|..+++|++|++++|++.|.+|....
T Consensus       199 -~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~  245 (276)
T 2z62_A          199 -EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  245 (276)
T ss_dssp             -SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHH
T ss_pred             -CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHH
Confidence             45899999999999988777889999999999999999999886543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.5e-24  Score=243.85  Aligned_cols=262  Identities=26%  Similarity=0.258  Sum_probs=161.9

Q ss_pred             CCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCC
Q 042537          360 TIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSN  439 (789)
Q Consensus       360 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~  439 (789)
                      .++.|++++|.++ .+|. .+.  ++|+.|++++|.++... ..+++|+.|++++|++++.+.     ..++|++|++++
T Consensus        41 ~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~~lp-~~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~  110 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTSLP-ALPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFS  110 (622)
T ss_dssp             CCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCSCCC-CCCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECS
T ss_pred             CCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCCCCC-CcCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcC
Confidence            3555555555554 4443 121  45566666666555432 245666666666666655433     126677777777


Q ss_pred             CccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCc
Q 042537          440 NILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIP  519 (789)
Q Consensus       440 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p  519 (789)
                      |.+++. |.   .+++|+.|++++|+++. +|..   +++|++|++++|.+++. |.   .+++|+.|++++|.++ .+|
T Consensus       111 N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~  177 (622)
T 3g06_A          111 NPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-SLP  177 (622)
T ss_dssp             CCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCC
T ss_pred             CcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC-CCc
Confidence            777643 32   45667777777777764 3432   36677777777777643 32   2356777777777776 566


Q ss_pred             hhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCccccccccc
Q 042537          520 TWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIE  599 (789)
Q Consensus       520 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  599 (789)
                          ..+++|+.|++++|++++ +|..   +++|+.|++++|.++.. |..                             
T Consensus       178 ----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l-~~~-----------------------------  219 (622)
T 3g06_A          178 ----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PAL-----------------------------  219 (622)
T ss_dssp             ----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-CCC-----------------------------
T ss_pred             ----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccccc-CCC-----------------------------
Confidence                135677777777777764 3322   35677777777776632 211                             


Q ss_pred             ccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeC
Q 042537          600 FLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDL  679 (789)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  679 (789)
                                             +++|+.|++++|++++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|
T Consensus       220 -----------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L  268 (622)
T 3g06_A          220 -----------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV  268 (622)
T ss_dssp             -----------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred             -----------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence                                   1234777777777774 45   44567777777777777 4554   5567777777


Q ss_pred             CCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537          680 SQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       680 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  714 (789)
                      ++|+|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus       269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            777777 5677777777777777777777776653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=8.3e-28  Score=250.36  Aligned_cols=80  Identities=29%  Similarity=0.282  Sum_probs=49.9

Q ss_pred             eeEEEcccCccccccc-hhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEecc
Q 042537          626 VKILDFSMNKLSGTIP-EEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS  704 (789)
Q Consensus       626 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  704 (789)
                      |+.|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|+.|||++|++++. |. +..+++|++|+++
T Consensus       230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~  304 (312)
T 1wwl_A          230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLK  304 (312)
T ss_dssp             CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECT
T ss_pred             CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEecc
Confidence            3556666666655443 33445566666677766666 5555554  6677777777777655 44 6667777777777


Q ss_pred             CCcccc
Q 042537          705 YNNLSG  710 (789)
Q Consensus       705 ~N~l~~  710 (789)
                      +|++++
T Consensus       305 ~N~l~~  310 (312)
T 1wwl_A          305 GNPFLD  310 (312)
T ss_dssp             TCTTTC
T ss_pred             CCCCCC
Confidence            777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.2e-26  Score=252.85  Aligned_cols=216  Identities=23%  Similarity=0.238  Sum_probs=181.9

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      ++|++|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            579999999999998888899999999999999999987665  8889999999999999986543     389999999


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccc-ccccCcccCCCccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLN-NFTGMAQKSSSNLAIT  588 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~~~~~~~~  588 (789)
                      ++|.+++ ++..   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|           
T Consensus       107 ~~N~l~~-~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-----------  171 (487)
T 3oja_A          107 ANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-----------  171 (487)
T ss_dssp             CSSCCCC-EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-----------
T ss_pred             cCCcCCC-CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-----------
Confidence            9999984 4432   468899999999999988888899999999999999999987776654 44444           


Q ss_pred             cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537          589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI  668 (789)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  668 (789)
                                                            +.|+|++|.+++..+  +..+++|+.|+|++|++++ +|+.+
T Consensus       172 --------------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~  210 (487)
T 3oja_A          172 --------------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEF  210 (487)
T ss_dssp             --------------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGG
T ss_pred             --------------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhH
Confidence                                                  899999999986533  3468899999999999996 45558


Q ss_pred             ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccc
Q 042537          669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS  709 (789)
Q Consensus       669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  709 (789)
                      ..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.
T Consensus       211 ~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             cCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            899999999999999995 6777888999999999999987

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=4.7e-26  Score=237.70  Aligned_cols=216  Identities=23%  Similarity=0.245  Sum_probs=130.1

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      ++|++|++++|++++..|..|.++++|++|++++|++++..+  +..+++|++|++++|.+++..     ..++|++|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEEC
Confidence            567777777777776666667777777777777777765443  666777777777777766433     2367777777


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccc-ccccCcccCCCccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLN-NFTGMAQKSSSNLAIT  588 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~~~~~~~~  588 (789)
                      ++|+++ .++..   .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+. .+++|           
T Consensus       107 ~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-----------  171 (317)
T 3o53_A          107 ANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-----------  171 (317)
T ss_dssp             CSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-----------
T ss_pred             CCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC-----------
Confidence            777776 33322   246677777777777766666666677777777777776655444332 23333           


Q ss_pred             cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537          589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI  668 (789)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  668 (789)
                                                            +.|++++|++++. |. ...+++|++|+|++|++++ +|+.+
T Consensus       172 --------------------------------------~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~  210 (317)
T 3o53_A          172 --------------------------------------EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEF  210 (317)
T ss_dssp             --------------------------------------CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGG
T ss_pred             --------------------------------------CEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhh
Confidence                                                  5556666665533 21 2235556666666666653 33345


Q ss_pred             ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccc
Q 042537          669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS  709 (789)
Q Consensus       669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  709 (789)
                      ..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++.
T Consensus       211 ~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            55566666666666655 34445555556666666666555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.5e-26  Score=239.83  Aligned_cols=276  Identities=18%  Similarity=0.209  Sum_probs=168.8

Q ss_pred             CcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCC
Q 042537          229 LRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIP  308 (789)
Q Consensus       229 L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  308 (789)
                      ++.+.+.++.++..+++.+.+...+...+..+++|++|+|++|.+++ ++...|..+++|++|++++|.+++..      
T Consensus         2 i~~l~~~g~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~------   74 (317)
T 3o53_A            2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETL------   74 (317)
T ss_dssp             CCEEEEETTEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEE------
T ss_pred             cccccCCcCceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcch------
Confidence            34555666666666666777766666666777788888888888874 45446788888888888887776322      


Q ss_pred             cccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCE
Q 042537          309 PFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSS  388 (789)
Q Consensus       309 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~  388 (789)
                                         . +..+++|++|++++|.+++..+.      ++                         |++
T Consensus        75 -------------------~-~~~l~~L~~L~Ls~n~l~~l~~~------~~-------------------------L~~  103 (317)
T 3o53_A           75 -------------------D-LESLSTLRTLDLNNNYVQELLVG------PS-------------------------IET  103 (317)
T ss_dssp             -------------------E-ETTCTTCCEEECCSSEEEEEEEC------TT-------------------------CCE
T ss_pred             -------------------h-hhhcCCCCEEECcCCccccccCC------CC-------------------------cCE
Confidence                               1 44555666666666655432211      23                         334


Q ss_pred             EEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccc-cCCCCcEEEcCCCcCc
Q 042537          389 IDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWM-QFDRLAVLSLANNFFS  467 (789)
Q Consensus       389 L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~  467 (789)
                      |++++|.+++..+..+++|+.|++++|++++..+.... .+++|++|++++|.+++..+..+. .+++|++|++++|.++
T Consensus       104 L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             EECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             EECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            44444444433333345556666666666554432221 126677777777777765555553 5677777777777776


Q ss_pred             ccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCccc-ccCCCC
Q 042537          468 GKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH-GNIPFQ  546 (789)
Q Consensus       468 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~-~~~~~~  546 (789)
                      +..+  ...+++|++|++++|++++..+ .+..+++|+.|++++|+++ .+|..+. .+++|+.|++++|++. +..+..
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~-~l~~L~~L~l~~N~~~~~~~~~~  257 (317)
T 3o53_A          183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFHCGTLRDF  257 (317)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCCCBHHHHHHH
T ss_pred             cccc--ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhh-cCCCCCEEEccCCCccCcCHHHH
Confidence            5422  2236677777777777775433 3666777777777777776 5666554 5677777777777776 555666


Q ss_pred             ccCCCcCceEeccCC-cccccCC
Q 042537          547 VCQLSYIQILDLSLN-NISGIIP  568 (789)
Q Consensus       547 ~~~l~~L~~L~Ls~N-~l~~~~p  568 (789)
                      +..++.|+.++++++ .+.+..|
T Consensus       258 ~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          258 FSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             HHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             HhccccceEEECCCchhccCCch
Confidence            666777777777633 3444433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.3e-24  Score=242.43  Aligned_cols=268  Identities=25%  Similarity=0.332  Sum_probs=202.4

Q ss_pred             CccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCC
Q 042537          335 QIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSR  414 (789)
Q Consensus       335 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  414 (789)
                      .++.|++++|.++. +|..+.   ++|+.|++++|.++ .+|.    .+++|++|++++|.+++... .+++|+.|++++
T Consensus        41 ~l~~L~ls~n~L~~-lp~~l~---~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~  110 (622)
T 3g06_A           41 GNAVLNVGESGLTT-LPDCLP---AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFS  110 (622)
T ss_dssp             CCCEEECCSSCCSC-CCSCCC---TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC-CCTTCCEEEECS
T ss_pred             CCcEEEecCCCcCc-cChhhC---CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC-CCCCCCEEECcC
Confidence            35566666666652 333222   46666666666665 3443    34567777777777765433 667888888888


Q ss_pred             CcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeC
Q 042537          415 NKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGEL  494 (789)
Q Consensus       415 n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  494 (789)
                      |++++.+.     ..++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|.+++ +
T Consensus       111 N~l~~l~~-----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l  176 (622)
T 3g06_A          111 NPLTHLPA-----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L  176 (622)
T ss_dssp             CCCCCCCC-----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             CcCCCCCC-----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence            88877554     12789999999999885 4443   4889999999999985 443   34679999999999985 4


Q ss_pred             CcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccccc
Q 042537          495 PSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNF  574 (789)
Q Consensus       495 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  574 (789)
                      |   ..+++|+.|++++|.++ .+|.    .+++|+.|++++|.++. +|..   +++|+.|++++|.+++ +|.   . 
T Consensus       177 ~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-lp~---~-  239 (622)
T 3g06_A          177 P---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPV---L-  239 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCC---C-
T ss_pred             c---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-CCC---C-
Confidence            4   45689999999999998 6775    35789999999999984 4432   4789999999999885 331   1 


Q ss_pred             ccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEE
Q 042537          575 TGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALN  654 (789)
Q Consensus       575 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  654 (789)
                                                                      +++|+.|++++|+|+ .+|.   .+++|+.|+
T Consensus       240 ------------------------------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~  267 (622)
T 3g06_A          240 ------------------------------------------------PSELKELMVSGNRLT-SLPM---LPSGLLSLS  267 (622)
T ss_dssp             ------------------------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred             ------------------------------------------------CCcCcEEECCCCCCC-cCCc---ccccCcEEe
Confidence                                                            233489999999999 5665   678999999


Q ss_pred             ccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC
Q 042537          655 LSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS  696 (789)
Q Consensus       655 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  696 (789)
                      |++|+|+ .+|..+.++++|+.|+|++|++++.+|..+..++
T Consensus       268 Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            9999999 7899999999999999999999999999887765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=7.7e-27  Score=243.05  Aligned_cols=87  Identities=20%  Similarity=0.143  Sum_probs=41.5

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCC-CCCCcccc-------CCCCCcEEeccCccCCCCcchH
Q 042537           72 LKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFE-GPIPSQLG-------NLSRLKYLDLSYINLNKSRDWL  143 (789)
Q Consensus        72 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~~~~  143 (789)
                      +..++|++|++++|.+  . +|..+...  |++|+|++|.+. ..+|..+.       ++++|++|++++|++++.  +|
T Consensus        40 ~~~~~L~~l~l~~n~l--~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~  112 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT--AP  112 (312)
T ss_dssp             EEEEECTTHHHHCCTT--C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC--CC
T ss_pred             ccCCCceeEeeccccc--c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch--hH
Confidence            3344555555555555  1 44433322  555555555552 22333333       455555555555555532  23


Q ss_pred             Hhh--CCCCCCCEEEcCCCCCCCC
Q 042537          144 RII--DKLPSLRTLNLEHCHLPPI  165 (789)
Q Consensus       144 ~~l--~~l~~L~~L~L~~n~l~~~  165 (789)
                      ..+  ..+++|++|++++|.+++.
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~  136 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR  136 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS
T ss_pred             HHHHHhcCCCccEEEccCCCCcch
Confidence            332  5555555555555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.3e-24  Score=219.31  Aligned_cols=206  Identities=22%  Similarity=0.249  Sum_probs=147.4

Q ss_pred             CcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcC
Q 042537          456 LAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLK  535 (789)
Q Consensus       456 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~  535 (789)
                      .+.+++++++++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.++ .+|..++..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence            444555555555 2333332  34566666666665555555666666666666666665 5555554456667777777


Q ss_pred             CCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecc
Q 042537          536 SNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGS  615 (789)
Q Consensus       536 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  615 (789)
                      +|++.+..+..+..+++|++|++++|++++..+..|..+++|                                      
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------------  135 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL--------------------------------------  135 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------------------------------
Confidence            776665555566677777777777777776666555555444                                      


Q ss_pred             ccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcC
Q 042537          616 QHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL  695 (789)
Q Consensus       616 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  695 (789)
                                 +.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+
T Consensus       136 -----------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  204 (270)
T 2o6q_A          136 -----------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL  204 (270)
T ss_dssp             -----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             -----------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccc
Confidence                       778888888886666668889999999999999997777778999999999999999998777788999


Q ss_pred             CCCCeEeccCCcccccCCC
Q 042537          696 SRLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       696 ~~L~~L~ls~N~l~~~~p~  714 (789)
                      ++|+.|++++|++.+.++.
T Consensus       205 ~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          205 EKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTCCEEECCSSCBCCSSSS
T ss_pred             cCCCEEEecCCCeeCCCcc
Confidence            9999999999999888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.6e-24  Score=218.98  Aligned_cols=219  Identities=26%  Similarity=0.362  Sum_probs=159.3

Q ss_pred             CCCCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCc
Q 042537           32 RDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAE  111 (789)
Q Consensus        32 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~  111 (789)
                      .++|.|.|+.|. ..+.++.+++++    +.+. .+|..+.  +++++|++++|+++.. .+..|.++++|++|++++|.
T Consensus         2 ~~~C~~~~~~C~-c~~~~~~l~~~~----~~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~   72 (270)
T 2o6q_A            2 EALCKKDGGVCS-CNNNKNSVDCSS----KKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNK   72 (270)
T ss_dssp             CCCBGGGTCSBE-EETTTTEEECTT----SCCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSC
T ss_pred             CccCCCCCCCCE-eCCCCCEEEccC----CCCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCc
Confidence            478999999985 334567788887    5555 4665554  5788999999988865 45678888999999999998


Q ss_pred             CCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCC
Q 042537          112 FEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLS  191 (789)
Q Consensus       112 i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~  191 (789)
                      ++...+..|.++++|++|++++|+++.++  +..+..+++|++|++++|.+++..+.  .+..+                
T Consensus        73 l~~i~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l----------------  132 (270)
T 2o6q_A           73 LQTLPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQLKSLPPR--VFDSL----------------  132 (270)
T ss_dssp             CSCCCTTTTSSCTTCCEEECCSSCCCCCC--TTTTTTCSSCCEEECCSSCCCCCCTT--TTTTC----------------
T ss_pred             cCeeChhhhcCCCCCCEEECCCCcCCcCC--HhHcccccCCCEEECCCCccCeeCHH--HhCcC----------------
Confidence            88666667788888888888888888753  25677788888888888877765542  11222                


Q ss_pred             CCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCC
Q 042537          192 SSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGN  271 (789)
Q Consensus       192 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  271 (789)
                                 ++|++|++++|.+++..+..|..+++|+.|+++          +|.+++..+..|..+++|++|++++|
T Consensus       133 -----------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~----------~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          133 -----------TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY----------NNQLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             -----------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC----------SSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             -----------cCCCEEECCCCcCCccCHhHccCCcccceeEec----------CCcCcEeChhHhccCCCcCEEECCCC
Confidence                       366777777777776666667777777777777          44455555566777778888888888


Q ss_pred             CCCCccChhhhhcCCCCcEEEccCCccccc
Q 042537          272 SLTGVVTESVFSELSNLKALHLDDNSFTLK  301 (789)
Q Consensus       272 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~  301 (789)
                      +++ .++...|..+++|+.|++++|++...
T Consensus       192 ~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          192 QLK-RVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CCS-CCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             cCC-cCCHHHhccccCCCEEEecCCCeeCC
Confidence            877 45555677788888888888877654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.6e-24  Score=219.99  Aligned_cols=213  Identities=24%  Similarity=0.217  Sum_probs=180.4

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      +++++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57889999999998777778999999999999999999888888999999999999999999888888999999999999


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCccccc-CCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGN-IPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAIT  588 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  588 (789)
                      ++|.+. .++...+..+++|++|++++|++++. +|..+..+++|++|++++|++++..+..+..+..+..+.       
T Consensus       108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~-------  179 (276)
T 2z62_A          108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN-------  179 (276)
T ss_dssp             TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC-------
T ss_pred             CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc-------
Confidence            999998 45543344789999999999999864 588899999999999999999988777777776663211       


Q ss_pred             cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537          589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI  668 (789)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  668 (789)
                                                            ..|++++|++++..+..+. ..+|++|+|++|++++..+..+
T Consensus       180 --------------------------------------l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~  220 (276)
T 2z62_A          180 --------------------------------------LSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIF  220 (276)
T ss_dssp             --------------------------------------EEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTT
T ss_pred             --------------------------------------eeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHh
Confidence                                                  2799999999966555544 4589999999999997767778


Q ss_pred             ccCCCCCEEeCCCCcccccCc
Q 042537          669 DQLKSLDFLDLSQNQFVGGIP  689 (789)
Q Consensus       669 ~~l~~L~~L~Ls~N~l~~~~p  689 (789)
                      ..+++|+.|+|++|++++..|
T Consensus       221 ~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          221 DRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             TTCCSCCEEECCSSCBCCCTT
T ss_pred             cccccccEEEccCCcccccCC
Confidence            999999999999999997654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=5.7e-25  Score=242.82  Aligned_cols=221  Identities=21%  Similarity=0.129  Sum_probs=190.6

Q ss_pred             cCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcE
Q 042537          452 QFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVV  531 (789)
Q Consensus       452 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~  531 (789)
                      .+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|  |..+++|++|++++|.++ .+|     ..++|+.
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE-----ECTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC-----CCCCcCE
Confidence            34589999999999998888899999999999999999998776  899999999999999998 555     2489999


Q ss_pred             EEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEE
Q 042537          532 LSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLT  611 (789)
Q Consensus       532 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (789)
                      |++++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|                                  
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------------------------------  146 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV----------------------------------  146 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE----------------------------------
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC----------------------------------
Confidence            99999999976654   46889999999999998888777666555                                  


Q ss_pred             eeccccccccccCceeEEEcccCccccccchhhh-ccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCch
Q 042537          612 WKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIM-DLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPS  690 (789)
Q Consensus       612 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  690 (789)
                                     +.|++++|.+++.+|..+. .+++|+.|+|++|.+++..+  +..+++|+.|+|++|.+++..| 
T Consensus       147 ---------------~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-  208 (487)
T 3oja_A          147 ---------------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-  208 (487)
T ss_dssp             ---------------EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-
T ss_pred             ---------------CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-
Confidence                           9999999999998888886 79999999999999997633  4469999999999999997655 


Q ss_pred             hhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCC
Q 042537          691 SLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGL  735 (789)
Q Consensus       691 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  735 (789)
                      .+..+++|+.|++++|++++..+....+..+....+.||++.|++
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence            489999999999999999974333345566777789999999875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=7.7e-27  Score=267.13  Aligned_cols=82  Identities=13%  Similarity=0.089  Sum_probs=42.6

Q ss_pred             ceeEEEcccCccccccchhh-hccccCcEEEccCCcceeecCc-ccccCCCCCEEeCCCCcccccCchhh-hcCCCCCeE
Q 042537          625 LVKILDFSMNKLSGTIPEEI-MDLVGLVALNLSRNNLTGQITP-KIDQLKSLDFLDLSQNQFVGGIPSSL-CQLSRLSVM  701 (789)
Q Consensus       625 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L  701 (789)
                      +|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+..
T Consensus       457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~  536 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE  536 (594)
T ss_dssp             TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred             hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence            34666666666654444333 4456666666666666433322 23345666666666666643333333 345555554


Q ss_pred             eccCC
Q 042537          702 NLSYN  706 (789)
Q Consensus       702 ~ls~N  706 (789)
                      .+..+
T Consensus       537 ~~~~~  541 (594)
T 2p1m_B          537 VIDER  541 (594)
T ss_dssp             EECSS
T ss_pred             EecCC
Confidence            44444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.1e-23  Score=216.16  Aligned_cols=206  Identities=21%  Similarity=0.243  Sum_probs=147.0

Q ss_pred             cccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCC
Q 042537          450 WMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKL  529 (789)
Q Consensus       450 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L  529 (789)
                      +.++++++.+++++|.++ .+|..+.  +.++.|++++|.+++..+..|..+++|++|++++|.++ .++..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence            455666666666666666 3443332  46677777777776666666777777777777777776 44433  256777


Q ss_pred             cEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeE
Q 042537          530 VVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVV  609 (789)
Q Consensus       530 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  609 (789)
                      ++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|                                
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------  126 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------  126 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence            77777777776 556667777777778888777776666666655555                                


Q ss_pred             EEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCc
Q 042537          610 LTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIP  689 (789)
Q Consensus       610 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  689 (789)
                                       +.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|
T Consensus       127 -----------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip  188 (290)
T 1p9a_G          127 -----------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP  188 (290)
T ss_dssp             -----------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             -----------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence                             77888888887666667778888888888888888655556778888888888888888 567


Q ss_pred             hhhhcCCCCCeEeccCCcccccC
Q 042537          690 SSLCQLSRLSVMNLSYNNLSGKI  712 (789)
Q Consensus       690 ~~l~~l~~L~~L~ls~N~l~~~~  712 (789)
                      ..+..+++|+.+++++|++.+.+
T Consensus       189 ~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          189 KGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TTTTTTCCCSEEECCSCCBCCSG
T ss_pred             hhhcccccCCeEEeCCCCccCcC
Confidence            77777778888888888887655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.3e-23  Score=212.13  Aligned_cols=220  Identities=20%  Similarity=0.230  Sum_probs=158.1

Q ss_pred             CEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCC
Q 042537          433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN  512 (789)
Q Consensus       433 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n  512 (789)
                      ..+++..+.+...  .....+++|+.|++++|.++. + ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|
T Consensus        22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred             HHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence            3344444444322  224455666666666666652 2 2355666677777777766642  35666777777777777


Q ss_pred             cccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcc
Q 042537          513 GLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYT  592 (789)
Q Consensus       513 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~  592 (789)
                      .++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|               
T Consensus        96 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L---------------  159 (272)
T 3rfs_A           96 QLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL---------------  159 (272)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------
T ss_pred             ccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC---------------
Confidence            776 4444443467777777777777776666667778888888888888876666555555554               


Q ss_pred             cccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCC
Q 042537          593 FERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLK  672 (789)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  672 (789)
                                                        +.|++++|++++..+..|+.+++|++|++++|++++..|..+..++
T Consensus       160 ----------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  205 (272)
T 3rfs_A          160 ----------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  205 (272)
T ss_dssp             ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ----------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence                                              7888888888877777788999999999999999988887889999


Q ss_pred             CCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCC
Q 042537          673 SLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG  715 (789)
Q Consensus       673 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  715 (789)
                      +|+.|++++|.+.+..       +.|+.++++.|.++|.+|..
T Consensus       206 ~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          206 SLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred             CCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence            9999999999988654       46889999999999999964

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.5e-23  Score=211.83  Aligned_cols=185  Identities=23%  Similarity=0.233  Sum_probs=94.3

Q ss_pred             cccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCc
Q 042537          475 GFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQ  554 (789)
Q Consensus       475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  554 (789)
                      ..+++|+.|++++|.+...  ..+..+++|++|++++|.+. .++ .+. .+++|++|++++|++++..+..+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS-ALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG-GGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch-hhc-CCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            3445555555555554421  23445555555555555554 232 222 455555555555555544444455555555


Q ss_pred             eEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccC
Q 042537          555 ILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMN  634 (789)
Q Consensus       555 ~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  634 (789)
                      +|++++|++++..+..|..+++|                                                 +.|++++|
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L-------------------------------------------------~~L~L~~n  143 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNL-------------------------------------------------TYLNLAHN  143 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTC-------------------------------------------------CEEECCSS
T ss_pred             EEECCCCcCCccCHHHhccCCCC-------------------------------------------------CEEECCCC
Confidence            55555555554444444333333                                                 55555555


Q ss_pred             ccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCC
Q 042537          635 KLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP  713 (789)
Q Consensus       635 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  713 (789)
                      ++++..+..|+.+++|++|++++|++++..+..++.+++|+.|++++|++++..|..+..+++|++|++++|++.|.+|
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            5554444445555555555555555554444444555555555555555555555445555555555555555555555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.9e-22  Score=206.88  Aligned_cols=201  Identities=21%  Similarity=0.168  Sum_probs=172.0

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      +++++++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..+.  ..+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred             CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence            67888888888888 4555443  6788999999999888888888999999999999998876543  67889999999


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      ++|+++ .+|..+. .+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|            
T Consensus        85 s~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------  150 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL------------  150 (290)
T ss_dssp             CSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC------------
Confidence            999998 8887665 78999999999999998777889999999999999999998777766666555            


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID  669 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  669 (789)
                                                           +.|++++|++++..+..|..+++|+.|+|++|+++ .+|..+.
T Consensus       151 -------------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~  192 (290)
T 1p9a_G          151 -------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (290)
T ss_dssp             -------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             -------------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence                                                 89999999999766677889999999999999999 7888888


Q ss_pred             cCCCCCEEeCCCCccccc
Q 042537          670 QLKSLDFLDLSQNQFVGG  687 (789)
Q Consensus       670 ~l~~L~~L~Ls~N~l~~~  687 (789)
                      .+++|+.|+|++|.+...
T Consensus       193 ~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          193 GSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TTCCCSEEECCSCCBCCS
T ss_pred             ccccCCeEEeCCCCccCc
Confidence            899999999999999753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=5.8e-24  Score=226.33  Aligned_cols=257  Identities=20%  Similarity=0.200  Sum_probs=187.2

Q ss_pred             EEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCC----cccccCC-CCcEEEcCCCcCcccCCcccccc-----Cc
Q 042537          410 LNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLP----DCWMQFD-RLAVLSLANNFFSGKIPKSMGFL-----HS  479 (789)
Q Consensus       410 L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~  479 (789)
                      ++++.|.+++.++...... ++|++|++++|.+++..+    .+|.+++ +|++|++++|.+++..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            5667777777666554432 559999999999887666    6778888 89999999999987777777665     88


Q ss_pred             ccEEEccCCeeeeeCCcC----ccCC-CCCcEEeCCCCcccccCchhhhh---c-CCCCcEEEcCCCcccccCC----CC
Q 042537          480 IQTLSLYNNSLIGELPSF----FKSC-SQLILMDLGKNGLSGEIPTWIGE---G-LPKLVVLSLKSNKFHGNIP----FQ  546 (789)
Q Consensus       480 L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~ls~n~l~~~~p~~~~~---~-l~~L~~L~L~~n~l~~~~~----~~  546 (789)
                      |++|++++|.+++..+..    +..+ ++|++|++++|++++..+..+..   . .++|++|++++|++.+..+    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999988665553    4444 78999999999998555544432   2 3589999999999885333    23


Q ss_pred             ccCCC-cCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecccccccccc-C
Q 042537          547 VCQLS-YIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTL-G  624 (789)
Q Consensus       547 ~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~  624 (789)
                      +..++ +|++|++++|++++..+..+...-                                             ... +
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l---------------------------------------------~~~~~  196 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFL---------------------------------------------ASIPA  196 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHH---------------------------------------------HTSCT
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHH---------------------------------------------HhCCC
Confidence            34454 899999999998877665443220                                             111 2


Q ss_pred             ceeEEEcccCccccc----cchhhhcc-ccCcEEEccCCcceeecC----cccccCCCCCEEeCCCCcccccCc------
Q 042537          625 LVKILDFSMNKLSGT----IPEEIMDL-VGLVALNLSRNNLTGQIT----PKIDQLKSLDFLDLSQNQFVGGIP------  689 (789)
Q Consensus       625 ~L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p------  689 (789)
                      .|+.||+++|.+++.    ++..+... ++|++|+|++|++++..+    ..+..+++|+.|+|++|.+.+..+      
T Consensus       197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l  276 (362)
T 3goz_A          197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL  276 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred             CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence            458999999999863    55566663 589999999999986544    334677899999999999654443      


Q ss_pred             -hhhhcCCCCCeEeccCCcccccC
Q 042537          690 -SSLCQLSRLSVMNLSYNNLSGKI  712 (789)
Q Consensus       690 -~~l~~l~~L~~L~ls~N~l~~~~  712 (789)
                       ..+..+++|+.||+++|++.+..
T Consensus       277 ~~~~~~l~~L~~LdL~~N~l~~~~  300 (362)
T 3goz_A          277 GAAFPNIQKIILVDKNGKEIHPSH  300 (362)
T ss_dssp             HTTSTTCCEEEEECTTSCBCCGGG
T ss_pred             HHHhccCCceEEEecCCCcCCCcc
Confidence             35667788999999999987653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=2.1e-22  Score=200.92  Aligned_cols=75  Identities=19%  Similarity=0.131  Sum_probs=41.4

Q ss_pred             EEEcccCccccccchhhhccccCcEEEccCCc-ceeecCcccccC-CCCCEEeCCCCcccccCchhhhcCCCCCeEeccC
Q 042537          628 ILDFSMNKLSGTIPEEIMDLVGLVALNLSRNN-LTGQITPKIDQL-KSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY  705 (789)
Q Consensus       628 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  705 (789)
                      .|++++|+++...+..|.. ++|++|+|++|+ +++..+..|..+ ++|+.|++++|++++..+.   .+++|+.|++++
T Consensus       160 ~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~  235 (239)
T 2xwt_C          160 TLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN  235 (239)
T ss_dssp             EEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred             EEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence            5555555555222222333 566666666663 665545556666 6666666666666643332   445666666665


Q ss_pred             C
Q 042537          706 N  706 (789)
Q Consensus       706 N  706 (789)
                      +
T Consensus       236 ~  236 (239)
T 2xwt_C          236 T  236 (239)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=5.1e-24  Score=229.25  Aligned_cols=235  Identities=18%  Similarity=0.231  Sum_probs=180.5

Q ss_pred             CCCCEEEcCCCccccCCC----cccccCCCCcEEEcCCCc---CcccCCccc-------cccCcccEEEccCCeeee---
Q 042537          430 HKLEFLDLSNNILSGRLP----DCWMQFDRLAVLSLANNF---FSGKIPKSM-------GFLHSIQTLSLYNNSLIG---  492 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~L~~n~l~~---  492 (789)
                      ++|++|++++|.++...+    ..+..+++|+.|++++|.   +.+.+|..+       ..+++|++|++++|.+..   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            678888888888876533    346678889999998864   444455444       678889999999999886   


Q ss_pred             -eCCcCccCCCCCcEEeCCCCcccccCchhhhh---cC---------CCCcEEEcCCCccc-ccCC---CCccCCCcCce
Q 042537          493 -ELPSFFKSCSQLILMDLGKNGLSGEIPTWIGE---GL---------PKLVVLSLKSNKFH-GNIP---FQVCQLSYIQI  555 (789)
Q Consensus       493 -~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~---~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~~L~~  555 (789)
                       .++..+..+++|++|++++|.+.+..+..+..   .+         ++|++|++++|+++ +.++   ..+..+++|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             45667788899999999999887444433332   22         89999999999987 2333   35667889999


Q ss_pred             EeccCCccccc-----CCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEE
Q 042537          556 LDLSLNNISGI-----IPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILD  630 (789)
Q Consensus       556 L~Ls~N~l~~~-----~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  630 (789)
                      |++++|+++..     .|..+..                                                 ++.|+.|+
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~-------------------------------------------------~~~L~~L~  222 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAY-------------------------------------------------CQELKVLD  222 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGG-------------------------------------------------CTTCCEEE
T ss_pred             EECcCCCCCHhHHHHHHHHHhhc-------------------------------------------------CCCccEEE
Confidence            99999988721     2223333                                                 34458999


Q ss_pred             cccCccc----cccchhhhccccCcEEEccCCcceee----cCccccc--CCCCCEEeCCCCcccc----cCchhh-hcC
Q 042537          631 FSMNKLS----GTIPEEIMDLVGLVALNLSRNNLTGQ----ITPKIDQ--LKSLDFLDLSQNQFVG----GIPSSL-CQL  695 (789)
Q Consensus       631 Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l  695 (789)
                      |++|.++    +.+|..+..+++|++|+|++|++++.    ++..+..  +++|+.|+|++|.+++    .+|..+ .++
T Consensus       223 Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l  302 (386)
T 2ca6_A          223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM  302 (386)
T ss_dssp             CCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred             CcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence            9999996    57888899999999999999999876    5666643  8999999999999998    477777 678


Q ss_pred             CCCCeEeccCCcccccCC
Q 042537          696 SRLSVMNLSYNNLSGKIP  713 (789)
Q Consensus       696 ~~L~~L~ls~N~l~~~~p  713 (789)
                      ++|++|++++|++++..|
T Consensus       303 ~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          303 PDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TTCCEEECTTSBSCTTSH
T ss_pred             CCceEEEccCCcCCcchh
Confidence            999999999999987765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=3.7e-22  Score=200.60  Aligned_cols=191  Identities=23%  Similarity=0.223  Sum_probs=117.9

Q ss_pred             CCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCC
Q 042537          503 QLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSS  582 (789)
Q Consensus       503 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  582 (789)
                      +++.|++++|++.+..+..+ .++++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|     
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-----  109 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-----  109 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-----
T ss_pred             CCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-----
Confidence            44455555555542222222 245555555555555555555555666666666666666665555555444444     


Q ss_pred             CccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCccee
Q 042537          583 SNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTG  662 (789)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  662 (789)
                                                                  +.|++++|++++..+..|..+++|++|+|++|++++
T Consensus       110 --------------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A          110 --------------------------------------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             --------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             --------------------------------------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence                                                        677777777776666667788888888888888886


Q ss_pred             ecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccc------cccccCCCCCCCCCC
Q 042537          663 QITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSF------NASVYAGNPELCGLP  736 (789)
Q Consensus       663 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~------~~~~~~~n~~lc~~~  736 (789)
                      ..+..|+.+++|+.|+|++|++++..+..|..+++|++|++++|++.|..+....+..+      ......|+ ..|+.+
T Consensus       146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~  224 (251)
T 3m19_A          146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESP  224 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCG
T ss_pred             cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCC
Confidence            66667888888888999999888877778888888999999999988774432211111      11112333 356666


Q ss_pred             CCCCCCCC
Q 042537          737 LRNKCPDE  744 (789)
Q Consensus       737 l~~~c~~~  744 (789)
                      ....|..+
T Consensus       225 ~~~~C~~~  232 (251)
T 3m19_A          225 DGVTCSDG  232 (251)
T ss_dssp             GGCBBTTS
T ss_pred             CcCccCCC
Confidence            66667654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=3.3e-22  Score=199.56  Aligned_cols=198  Identities=16%  Similarity=0.159  Sum_probs=168.6

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCc-CcccCCccccccCcccEEEccC-CeeeeeCCcCccCCCCCcEE
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF-FSGKIPKSMGFLHSIQTLSLYN-NSLIGELPSFFKSCSQLILM  507 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  507 (789)
                      +++++|++++|++++..+..|.++++|++|++++|+ ++...+..|..+++|++|++++ |.+++..+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            578999999999987777789999999999999997 8877777899999999999998 99998888889999999999


Q ss_pred             eCCCCcccccCchhhhhcCCCCc---EEEcCCC-cccccCCCCccCCCcCc-eEeccCCcccccCCccccccccCcccCC
Q 042537          508 DLGKNGLSGEIPTWIGEGLPKLV---VLSLKSN-KFHGNIPFQVCQLSYIQ-ILDLSLNNISGIIPKCLNNFTGMAQKSS  582 (789)
Q Consensus       508 ~ls~n~l~~~~p~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  582 (789)
                      ++++|+++ .+|. + ..+++|+   +|++++| ++++..+..|.++++|+ .|++++|+++...+..|.. +       
T Consensus       111 ~l~~n~l~-~lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~-------  179 (239)
T 2xwt_C          111 GIFNTGLK-MFPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T-------  179 (239)
T ss_dssp             EEEEECCC-SCCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C-------
T ss_pred             eCCCCCCc-cccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C-------
Confidence            99999998 5886 3 3688888   9999999 99987777899999999 9999999998544433332 2       


Q ss_pred             CccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCc-cccccchhhhcc-ccCcEEEccCCcc
Q 042537          583 SNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNK-LSGTIPEEIMDL-VGLVALNLSRNNL  660 (789)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l  660 (789)
                                                                .|+.|++++|+ +++..+..|..+ ++|+.|++++|++
T Consensus       180 ------------------------------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          180 ------------------------------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             ------------------------------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred             ------------------------------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence                                                      35999999995 997777889999 9999999999999


Q ss_pred             eeecCcccccCCCCCEEeCCCCc
Q 042537          661 TGQITPKIDQLKSLDFLDLSQNQ  683 (789)
Q Consensus       661 ~~~~p~~~~~l~~L~~L~Ls~N~  683 (789)
                      ++ +|..  .+++|+.|+++++.
T Consensus       218 ~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          218 TA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CC-CCCT--TCTTCSEEECTTC-
T ss_pred             cc-CChh--HhccCceeeccCcc
Confidence            94 5544  67899999998874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=7e-23  Score=212.99  Aligned_cols=206  Identities=21%  Similarity=0.144  Sum_probs=117.8

Q ss_pred             CCCCEEEcCCCccccCCCccc--ccCCCCcEEEcCCCcCcccCC----ccccccCcccEEEccCCeeeeeCCcCccCCCC
Q 042537          430 HKLEFLDLSNNILSGRLPDCW--MQFDRLAVLSLANNFFSGKIP----KSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQ  503 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  503 (789)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..+..|..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            446666666666665555555  555666666666666554333    22234555555555555555554455555555


Q ss_pred             CcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCc---cccccccCccc
Q 042537          504 LILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPK---CLNNFTGMAQK  580 (789)
Q Consensus       504 L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~l  580 (789)
                      |++|++++|++.+...                     -..+..+..+++|++|++++|+++...+.   .+..       
T Consensus       171 L~~L~Ls~N~l~~~~~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~-------  222 (310)
T 4glp_A          171 LTSLDLSDNPGLGERG---------------------LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA-------  222 (310)
T ss_dssp             CCEEECCSCTTCHHHH---------------------HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH-------
T ss_pred             CCEEECCCCCCccchh---------------------hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc-------
Confidence            5555555555432100                     00112234556666666666665421110   0112       


Q ss_pred             CCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhcc---ccCcEEEccC
Q 042537          581 SSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDL---VGLVALNLSR  657 (789)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~  657 (789)
                                                                ++.|++||+++|++++..|..+..+   ++|++|+|++
T Consensus       223 ------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~  260 (310)
T 4glp_A          223 ------------------------------------------GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF  260 (310)
T ss_dssp             ------------------------------------------TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred             ------------------------------------------CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence                                                      2334667777777776666666555   5788888888


Q ss_pred             CcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccc
Q 042537          658 NNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSG  710 (789)
Q Consensus       658 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  710 (789)
                      |+++ .+|..+.  ++|+.|||++|++++. |. +..+++|++|++++|+++.
T Consensus       261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            8887 5666654  6888888888888754 33 5677888888888888753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=9.4e-23  Score=212.03  Aligned_cols=179  Identities=16%  Similarity=0.117  Sum_probs=135.5

Q ss_pred             CCCEEEccCCcccccCC----C--CCCCCcEEEcCCCcCccccchhcc-cCCCCCCEEEcCCCccccCCC----cccccC
Q 042537          385 FSSSIDISSNYFEGLIP----P--LPSNASVLNLSRNKFSESISFLCS-INGHKLEFLDLSNNILSGRLP----DCWMQF  453 (789)
Q Consensus       385 ~L~~L~l~~n~l~~~~~----~--~~~~L~~L~l~~n~i~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~----~~~~~l  453 (789)
                      .++.+.+.++.+.....    .  ..++|+.|++++|.+.+..+.... ...++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            36778888877653211    0  135699999999999987776542 334899999999999997655    345679


Q ss_pred             CCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeee---C-CcCccCCCCCcEEeCCCCcccccCchh---hhhcC
Q 042537          454 DRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGE---L-PSFFKSCSQLILMDLGKNGLSGEIPTW---IGEGL  526 (789)
Q Consensus       454 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~ls~n~l~~~~p~~---~~~~l  526 (789)
                      ++|++|++++|++.+..+..|..+++|++|++++|++.+.   . +..+..+++|++|++++|+++ .++..   ++..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence            9999999999999988889999999999999999997642   2 233478899999999999997 44442   44467


Q ss_pred             CCCcEEEcCCCcccccCCCCccCC---CcCceEeccCCccc
Q 042537          527 PKLVVLSLKSNKFHGNIPFQVCQL---SYIQILDLSLNNIS  564 (789)
Q Consensus       527 ~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~  564 (789)
                      ++|++|++++|++.+..|..+..+   ++|++|++++|+++
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence            888888888888887666666554   46666666666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.2e-21  Score=202.90  Aligned_cols=193  Identities=25%  Similarity=0.386  Sum_probs=113.6

Q ss_pred             cCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcE
Q 042537          452 QFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVV  531 (789)
Q Consensus       452 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~  531 (789)
                      .+++|+.|++++|.++. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|+++ .++ .+. .+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~  111 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKT  111 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCE
Confidence            34445555555555542 22 34455555555555555553332  555555555555555555 333 222 4566666


Q ss_pred             EEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEE
Q 042537          532 LSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLT  611 (789)
Q Consensus       532 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (789)
                      |++++|++++. + .+..+++|+.|++++|.+++..+  +..++                                    
T Consensus       112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~------------------------------------  151 (308)
T 1h6u_A          112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLT------------------------------------  151 (308)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCT------------------------------------
T ss_pred             EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCC------------------------------------
Confidence            66666666542 2 25566666666666666654322  33322                                    


Q ss_pred             eeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchh
Q 042537          612 WKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSS  691 (789)
Q Consensus       612 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  691 (789)
                                   .|+.|++++|++++..+  +..+++|+.|++++|++++..+  +..+++|+.|+|++|++++..|  
T Consensus       152 -------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--  212 (308)
T 1h6u_A          152 -------------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--  212 (308)
T ss_dssp             -------------TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--
T ss_pred             -------------CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--
Confidence                         33677777777764333  6777777777777777774332  6777777777777777775543  


Q ss_pred             hhcCCCCCeEeccCCcccc
Q 042537          692 LCQLSRLSVMNLSYNNLSG  710 (789)
Q Consensus       692 l~~l~~L~~L~ls~N~l~~  710 (789)
                      +..+++|++|++++|++++
T Consensus       213 l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          213 LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GTTCTTCCEEEEEEEEEEC
T ss_pred             ccCCCCCCEEEccCCeeec
Confidence            6777777888888777764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=8.2e-23  Score=215.63  Aligned_cols=252  Identities=17%  Similarity=0.184  Sum_probs=187.9

Q ss_pred             CCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCccc-CCccccccCcccEEE
Q 042537          406 NASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGK-IPKSMGFLHSIQTLS  484 (789)
Q Consensus       406 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  484 (789)
                      .++.++++++.+..........  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus        48 ~~~~l~l~~~~~~~~~~~~~~~--~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           48 LWQTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TSSEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hheeeccccccCCHHHHHhhhh--ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            3566677766665221111111  6789999999999876665 55789999999999998765 777788899999999


Q ss_pred             ccCCeeeeeCCcCccCCCCCcEEeCCCC-ccccc-CchhhhhcCCCCcEEEcCCC-ccccc-CCCCccCCC-cCceEecc
Q 042537          485 LYNNSLIGELPSFFKSCSQLILMDLGKN-GLSGE-IPTWIGEGLPKLVVLSLKSN-KFHGN-IPFQVCQLS-YIQILDLS  559 (789)
Q Consensus       485 L~~n~l~~~~~~~~~~l~~L~~L~ls~n-~l~~~-~p~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~Ls  559 (789)
                      +++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            9999988777788888999999999999 67653 454444 7899999999999 88754 456677888 99999999


Q ss_pred             CCc--cc-ccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCc-
Q 042537          560 LNN--IS-GIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNK-  635 (789)
Q Consensus       560 ~N~--l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-  635 (789)
                      +|.  ++ +.+|..+..                                                 +++|+.|++++|. 
T Consensus       204 ~~~~~~~~~~l~~~~~~-------------------------------------------------~~~L~~L~l~~~~~  234 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRR-------------------------------------------------CPNLVHLDLSDSVM  234 (336)
T ss_dssp             SCGGGSCHHHHHHHHHH-------------------------------------------------CTTCSEEECTTCTT
T ss_pred             CCcccCCHHHHHHHHhh-------------------------------------------------CCCCCEEeCCCCCc
Confidence            994  43 223333333                                                 3445899999999 


Q ss_pred             cccccchhhhccccCcEEEccCCc-ceeecCcccccCCCCCEEeCCCCcccccCchhhhcC-CCCCeEeccCCcccccCC
Q 042537          636 LSGTIPEEIMDLVGLVALNLSRNN-LTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL-SRLSVMNLSYNNLSGKIP  713 (789)
Q Consensus       636 l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p  713 (789)
                      +++..+..+..+++|++|++++|. ++......+.++++|+.|++++| ++..   .+..+ ..++.|++++|++++..|
T Consensus       235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccC
Confidence            777788889999999999999995 33222236788999999999999 4432   33333 347777789999998888


Q ss_pred             C
Q 042537          714 L  714 (789)
Q Consensus       714 ~  714 (789)
                      .
T Consensus       311 ~  311 (336)
T 2ast_B          311 P  311 (336)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2e-21  Score=201.27  Aligned_cols=192  Identities=21%  Similarity=0.321  Sum_probs=155.6

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      ++|++|++++|.++. ++ .+..+++|+.|++++|.+++..+  +..+++|++|++++|++.+.  ..+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence            678899999998874 44 58888999999999999886544  88889999999999998754  36888999999999


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      ++|+++ .++. + ..+++|++|++++|++++..+  +..+++|+.|++++|.+++..+  +..+++             
T Consensus       115 ~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-------------  174 (308)
T 1h6u_A          115 TSTQIT-DVTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK-------------  174 (308)
T ss_dssp             TTSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT-------------
T ss_pred             CCCCCC-Cchh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCC-------------
Confidence            999998 5664 3 378999999999999986543  7888999999999998885433  444433             


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID  669 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  669 (789)
                                                          |+.|++++|++++..+  +..+++|++|+|++|++++..  .+.
T Consensus       175 ------------------------------------L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~  214 (308)
T 1h6u_A          175 ------------------------------------LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLA  214 (308)
T ss_dssp             ------------------------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGT
T ss_pred             ------------------------------------CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--ccc
Confidence                                                4899999999985544  888999999999999998654  388


Q ss_pred             cCCCCCEEeCCCCccccc
Q 042537          670 QLKSLDFLDLSQNQFVGG  687 (789)
Q Consensus       670 ~l~~L~~L~Ls~N~l~~~  687 (789)
                      .+++|+.|++++|++++.
T Consensus       215 ~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          215 NTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             TCTTCCEEEEEEEEEECC
T ss_pred             CCCCCCEEEccCCeeecC
Confidence            899999999999999853

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.6e-22  Score=213.45  Aligned_cols=237  Identities=22%  Similarity=0.188  Sum_probs=159.7

Q ss_pred             CCCCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCC--CCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCC
Q 042537           32 RDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKL--YHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSS  109 (789)
Q Consensus        32 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~  109 (789)
                      .-|.+|.++.|+  ...++++++++    +.+.   +..+..+  +++++|++++|.+.+. .+. +..+++|++|++++
T Consensus        34 ~vc~~W~~~~~~--~~~~~~l~l~~----~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~~  102 (336)
T 2ast_B           34 GVCKRWYRLASD--ESLWQTLDLTG----KNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLSN  102 (336)
T ss_dssp             SSCHHHHHHHTC--STTSSEEECTT----CBCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEECTT
T ss_pred             HHHHHHHHHhcC--chhheeecccc----ccCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEEccC
Confidence            347789998775  34577899987    4444   3456666  8899999999988864 443 56789999999999


Q ss_pred             CcCCCC-CCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCC-CCCCC-ccccccccccCCCCCCeEEcc
Q 042537          110 AEFEGP-IPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHC-HLPPI-IPSDLLHLNFSTSSLGALYLF  186 (789)
Q Consensus       110 n~i~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~l~~~~L~~L~l~  186 (789)
                      |.+++. +|..+..+++|++|++++|.+++  ..+..++++++|++|++++| .+++. .+  .....+  ++|++|+++
T Consensus       103 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~l~--~~~~~~--~~L~~L~l~  176 (336)
T 2ast_B          103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQ--TLLSSC--SRLDELNLS  176 (336)
T ss_dssp             CEECHHHHHHHHTTBCCCSEEECTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHHH--HHHHHC--TTCCEEECC
T ss_pred             CCcCHHHHHHHHhhCCCCCEEeCcCcccCH--HHHHHHhcCCCCCEEECCCCCCCCHHHHH--HHHhcC--CCCCEEcCC
Confidence            988755 77778889999999999998775  36778888999999999988 56542 22  122334  677777777


Q ss_pred             CC-CCCCCchhHHHhhcC-CCcEEEccCC--CCc-ccCchhhhcCCCCcEEECCCCCccEEecCCCc-CcccchhhhhCC
Q 042537          187 EN-SLSSSIYPWLFNISS-KLVVLDLDSN--LLQ-GSLLEPFDRMVSLRTLYLGFNELEELFLGKNR-LNGTINQWLSRM  260 (789)
Q Consensus       187 ~n-~l~~~~~~~~~~~~~-~L~~L~Ls~n--~i~-~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~-l~~~~~~~l~~l  260 (789)
                      +| .+++......+...+ +|++|++++|  .++ +..+..+..+++|+.|+++          +|. +++..+..+..+
T Consensus       177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~----------~~~~l~~~~~~~l~~l  246 (336)
T 2ast_B          177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS----------DSVMLKNDCFQEFFQL  246 (336)
T ss_dssp             CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT----------TCTTCCGGGGGGGGGC
T ss_pred             CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC----------CCCcCCHHHHHHHhCC
Confidence            77 666432233333344 6777777777  343 3345556667777777776          444 445555566677


Q ss_pred             CCCCEEEccCCC-CCCccChhhhhcCCCCcEEEccCC
Q 042537          261 YKLDALSLSGNS-LTGVVTESVFSELSNLKALHLDDN  296 (789)
Q Consensus       261 ~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n  296 (789)
                      ++|++|++++|. +. ......+.++++|++|++++|
T Consensus       247 ~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          247 NYLQHLSLSRCYDII-PETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCCEEECTTCTTCC-GGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCEeeCCCCCCCC-HHHHHHHhcCCCCCEEeccCc
Confidence            777777777774 22 111113566777777777766

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=7.8e-23  Score=219.95  Aligned_cols=272  Identities=18%  Similarity=0.214  Sum_probs=132.4

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCC---CcccccCCCCCCEEecCCCcC---CCCCCccc-------cCCCCCcEEecc
Q 042537           66 TISPSLLKLYHLRHLDLSENDFSGSR---IPEFIGSLNKLRYLSLSSAEF---EGPIPSQL-------GNLSRLKYLDLS  132 (789)
Q Consensus        66 ~l~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~~l~~L~~L~Ls~n~i---~~~~p~~~-------~~l~~L~~L~Ls  132 (789)
                      .++..+..+++|++|+|++|.++...   ++..+..+++|++|+|++|.+   .+.+|..+       .++++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            34455666677777777777665420   122355667777777776533   33334333       566666666666


Q ss_pred             CccCCCC--cchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhc--------
Q 042537          133 YINLNKS--RDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNIS--------  202 (789)
Q Consensus       133 ~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~--------  202 (789)
                      +|.++..  ..+|..+.++++|++|++++|.+....+..+                        +..+....        
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l------------------------~~~l~~l~~~~~~~~~  158 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI------------------------ARALQELAVNKKAKNA  158 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH------------------------HHHHHHHHHHHHHHTC
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH------------------------HHHHHHHhhhhhcccC
Confidence            6666542  1245556666666666666666542222101                        01111110        


Q ss_pred             CCCcEEEccCCCCc-ccCc---hhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCC----
Q 042537          203 SKLVVLDLDSNLLQ-GSLL---EPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLT----  274 (789)
Q Consensus       203 ~~L~~L~Ls~n~i~-~~~~---~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~----  274 (789)
                      ++|++|++++|.++ ...+   ..+..+++|+.|++++|+++.-     .+....+..+..+++|++|+|++|.++    
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-----g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~  233 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE-----GIEHLLLEGLAYCQELKVLDLQDNTFTHLGS  233 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH-----HHHHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh-----HHHHHHHHHhhcCCCccEEECcCCCCCcHHH
Confidence            24555555555444 1122   2334444444444442221100     000012224444555555555555543    


Q ss_pred             CccChhhhhcCCCCcEEEccCCccccc----ccCCC--CCcccceeEeccCccCCC----CCchhc-cCCCCccEEEccC
Q 042537          275 GVVTESVFSELSNLKALHLDDNSFTLK----FSHDW--IPPFQLIIILLGSCQMGP----HFPKWL-QTQNQIEVLDISD  343 (789)
Q Consensus       275 ~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~--~~~~~L~~L~l~~~~~~~----~~~~~l-~~l~~L~~L~ls~  343 (789)
                      +.++. .+..+++|++|++++|.++..    .+..+  ..+++|+.|++++|.+..    .+|..+ .++++|++|++++
T Consensus       234 ~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          234 SALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             HHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence            22332 344445555555555544432    11111  113444444444444443    356666 5578888888888


Q ss_pred             CcCCCCcc--hhHhhhccCCCeeeec
Q 042537          344 AGISDTVP--DWFWDLSHTIADFNLS  367 (789)
Q Consensus       344 n~i~~~~~--~~~~~~~~~L~~L~l~  367 (789)
                      |.+++..+  ..+....+.++.+.+.
T Consensus       313 N~l~~~~~~~~~l~~~l~~~~~~~l~  338 (386)
T 2ca6_A          313 NRFSEEDDVVDEIREVFSTRGRGELD  338 (386)
T ss_dssp             SBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred             CcCCcchhHHHHHHHHhhhcCcchhh
Confidence            88887764  5555555555544443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=7.2e-21  Score=191.20  Aligned_cols=178  Identities=21%  Similarity=0.247  Sum_probs=111.6

Q ss_pred             cEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCC
Q 042537          457 AVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS  536 (789)
Q Consensus       457 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~  536 (789)
                      +.++++++.++ .+|..+.  +.++.|++++|.+.+..+..|.++++|++|++++|.+++ ++...+..+++|++|++++
T Consensus        17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCC
Confidence            34444444444 2333222  345555555555555544455555555555555555552 3322222455666666666


Q ss_pred             CcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccc
Q 042537          537 NKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQ  616 (789)
Q Consensus       537 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (789)
                      |++++..+..+..+++|++|++++|++++..+..|..+++|                                       
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------------------------  133 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL---------------------------------------  133 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------------------------------
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc---------------------------------------
Confidence            66655555556666667777777776665555545444444                                       


Q ss_pred             cccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCccccc
Q 042537          617 HEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGG  687 (789)
Q Consensus       617 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  687 (789)
                                +.|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++.+.
T Consensus       134 ----------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          134 ----------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ----------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                      7777777777766666788888888889988888877777888888999999999998865

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=1.2e-21  Score=208.48  Aligned_cols=276  Identities=17%  Similarity=0.143  Sum_probs=165.8

Q ss_pred             EEcCCCCCCCCcccccCccccCCCCCCEEeCCCCCCCCCCCc----ccccCCC-CCCEEecCCCcCCCCCCccccCC---
Q 042537           52 LDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIP----EFIGSLN-KLRYLSLSSAEFEGPIPSQLGNL---  123 (789)
Q Consensus        52 l~L~~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~~l~-~L~~L~Ls~n~i~~~~p~~~~~l---  123 (789)
                      .+++.    +.+.|.+|..+...++|++|++++|.+++. .+    ..+..++ +|++|+|++|.+++..+..+..+   
T Consensus         3 ~~ls~----n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~   77 (362)
T 3goz_A            3 YKLTL----HPGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA   77 (362)
T ss_dssp             EECCC----CTTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred             ccccc----ccchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence            34555    677777777666666788888888888754 33    5667777 78888888888887666666664   


Q ss_pred             --CCCcEEeccCccCCCCc--chHHhhCCC-CCCCEEEcCCCCCCCCccccccc--cccCCCCCCeEEccCCCCCCCchh
Q 042537          124 --SRLKYLDLSYINLNKSR--DWLRIIDKL-PSLRTLNLEHCHLPPIIPSDLLH--LNFSTSSLGALYLFENSLSSSIYP  196 (789)
Q Consensus       124 --~~L~~L~Ls~n~l~~~~--~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~--~~l~~~~L~~L~l~~n~l~~~~~~  196 (789)
                        ++|++|+|++|+++...  .+...+..+ ++|++|++++|.+.+..+..+..  ..+ .++|++|++++|.+++....
T Consensus        78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~  156 (362)
T 3goz_A           78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL-PASITSLNLRGNDLGIKSSD  156 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS-CTTCCEEECTTSCGGGSCHH
T ss_pred             cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC-CCceeEEEccCCcCCHHHHH
Confidence              88888888888877541  122335555 78888888888876554422111  110 14777777777777654333


Q ss_pred             HH----HhhcCCCcEEEccCCCCcccCchhhhc----C-CCCcEEECCCCCccEEecCCCcCcccchhhhhC-CCCCCEE
Q 042537          197 WL----FNISSKLVVLDLDSNLLQGSLLEPFDR----M-VSLRTLYLGFNELEELFLGKNRLNGTINQWLSR-MYKLDAL  266 (789)
Q Consensus       197 ~~----~~~~~~L~~L~Ls~n~i~~~~~~~~~~----l-~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L  266 (789)
                      .+    ....++|++|++++|.+++..+..+..    + ++|+.|+|++|+++...      ...++..+.. .++|++|
T Consensus       157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~------~~~l~~~l~~~~~~L~~L  230 (362)
T 3goz_A          157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS------YAELAYIFSSIPNHVVSL  230 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC------HHHHHHHHHHSCTTCCEE
T ss_pred             HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH------HHHHHHHHhcCCCCceEE
Confidence            33    222236777777777777666544433    3 46666666633332100      0023444444 3467777


Q ss_pred             EccCCCCCCccC---hhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccC
Q 042537          267 SLSGNSLTGVVT---ESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISD  343 (789)
Q Consensus       267 ~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~  343 (789)
                      +|++|.+.+..+   ...+..+++|++|++++|.+........                 ..++..+..+++|+.||+++
T Consensus       231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~-----------------~~l~~~~~~l~~L~~LdL~~  293 (362)
T 3goz_A          231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC-----------------KALGAAFPNIQKIILVDKNG  293 (362)
T ss_dssp             ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH-----------------HHHHTTSTTCCEEEEECTTS
T ss_pred             ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH-----------------HHHHHHhccCCceEEEecCC
Confidence            777777763222   1123455666677766666432211100                 02334566788888999999


Q ss_pred             CcCCCCcchhHhh
Q 042537          344 AGISDTVPDWFWD  356 (789)
Q Consensus       344 n~i~~~~~~~~~~  356 (789)
                      |.+.+..+..+..
T Consensus       294 N~l~~~~~~~~~~  306 (362)
T 3goz_A          294 KEIHPSHSIPISN  306 (362)
T ss_dssp             CBCCGGGCHHHHH
T ss_pred             CcCCCcchHHHHH
Confidence            9888775555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=3.7e-20  Score=195.77  Aligned_cols=223  Identities=20%  Similarity=0.187  Sum_probs=157.0

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCC-ccccccCcccE-EEccCCeeeeeCCcCccCCCCCcEE
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIP-KSMGFLHSIQT-LSLYNNSLIGELPSFFKSCSQLILM  507 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L  507 (789)
                      +++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.++.|+++.+.|..|..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            567888888888886666678888888888888888765444 56777777665 5566788888888888888888888


Q ss_pred             eCCCCcccccCchhhhhcCCCCcEEEcCC-CcccccCCCCccCCC-cCceEeccCCcccccCCccccccccCcccCCCcc
Q 042537          508 DLGKNGLSGEIPTWIGEGLPKLVVLSLKS-NKFHGNIPFQVCQLS-YIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNL  585 (789)
Q Consensus       508 ~ls~n~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  585 (789)
                      ++++|++. .+|...+....++..+++.+ +++....+..|..+. .++.|++++|+++.+.+..|.. .          
T Consensus       110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~----------  177 (350)
T 4ay9_X          110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-T----------  177 (350)
T ss_dssp             EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-E----------
T ss_pred             cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc-c----------
Confidence            88888887 55544433456677787754 567665566666664 5788888888888655544422 1          


Q ss_pred             ccccCcccccccccccccccceeEEEeeccccccccccCceeEEEccc-CccccccchhhhccccCcEEEccCCcceeec
Q 042537          586 AITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSM-NKLSGTIPEEIMDLVGLVALNLSRNNLTGQI  664 (789)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  664 (789)
                                                             .++.+++++ |.++...++.|..+++|++|+|++|+|+...
T Consensus       178 ---------------------------------------~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp  218 (350)
T 4ay9_X          178 ---------------------------------------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  218 (350)
T ss_dssp             ---------------------------------------EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred             ---------------------------------------chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence                                                   237788875 5666444456788889999999999888443


Q ss_pred             CcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCc
Q 042537          665 TPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNN  707 (789)
Q Consensus       665 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  707 (789)
                      +..   +.+|+.|.+.++.-...+| .+..+++|+.++++++.
T Consensus       219 ~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          219 SYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             SSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             hhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            333   4556666665555444666 37788888888888754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=9e-21  Score=185.83  Aligned_cols=158  Identities=23%  Similarity=0.248  Sum_probs=135.6

Q ss_pred             cEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCC-CCccCCCcCceEeccCCcccccCCccccccccCcccCCC
Q 042537          505 ILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIP-FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS  583 (789)
Q Consensus       505 ~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  583 (789)
                      +.+++++|.++ .+|..+.   +.+++|++++|++++..+ ..|..+++|+.|++++|.+++..+..|..+++|      
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            47888888887 6776553   457888888888887654 457888899999999999888777777766655      


Q ss_pred             ccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceee
Q 042537          584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ  663 (789)
Q Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  663 (789)
                                                                 +.|+|++|++++..|..|..+++|++|+|++|++++.
T Consensus        84 -------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  120 (220)
T 2v70_A           84 -------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV  120 (220)
T ss_dssp             -------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCB
T ss_pred             -------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeE
Confidence                                                       8899999999988888899999999999999999988


Q ss_pred             cCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCC
Q 042537          664 ITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG  715 (789)
Q Consensus       664 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  715 (789)
                      .|..|..+++|+.|+|++|++++..|..|..+++|++|++++|++.|.++..
T Consensus       121 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          121 GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred             CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence            8999999999999999999999998999999999999999999999988754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=5.6e-20  Score=194.40  Aligned_cols=244  Identities=16%  Similarity=0.112  Sum_probs=174.7

Q ss_pred             CEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeC-CcCccCCCCCcE-EeCC
Q 042537          433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGEL-PSFFKSCSQLIL-MDLG  510 (789)
Q Consensus       433 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~ls  510 (789)
                      +.++.++++++ .+|..+  .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+ +..|.+++++++ +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            46777788887 566555  357888999999988776678888889999999998875544 457788887765 5666


Q ss_pred             CCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccC-CcccccCCccccccccCcccCCCcccccc
Q 042537          511 KNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSL-NNISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       511 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      .|+++ .++...+..+++|++|++++|++....+..+.....+..+++.+ +++....+..|..+.              
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--------------  153 (350)
T 4ay9_X           89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------  153 (350)
T ss_dssp             ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred             CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc--------------
Confidence            78887 66555555788889999988888876666666777788888865 456655444444332              


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccC-CcceeecCccc
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSR-NNLTGQITPKI  668 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~  668 (789)
                                                        ..++.|++++|+|+ .+|.......+|++|++++ |.++...+..|
T Consensus       154 ----------------------------------~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f  198 (350)
T 4ay9_X          154 ----------------------------------FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVF  198 (350)
T ss_dssp             ----------------------------------SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTT
T ss_pred             ----------------------------------hhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHh
Confidence                                              22489999999999 4555555667899999985 66764444578


Q ss_pred             ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCC
Q 042537          669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELC  733 (789)
Q Consensus       669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc  733 (789)
                      ..+++|+.|||++|+|+...+..|   ..|+.|.+.+++--..+|.-..+..+..... ++|+.|
T Consensus       199 ~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l-~~~~~c  259 (350)
T 4ay9_X          199 HGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLVALMEASL-TYPSHC  259 (350)
T ss_dssp             TTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCCSCCEEEC-SCHHHH
T ss_pred             ccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCcChhhCcC-CCCccc
Confidence            999999999999999996655554   4566666666554457776555555544433 355555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=8e-20  Score=177.89  Aligned_cols=63  Identities=19%  Similarity=0.142  Sum_probs=30.8

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCC
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS  696 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  696 (789)
                      +.|++++|++++..+..|..+++|++|++++|.+.+       .+++|+.|+++.|+++|.+|..++.++
T Consensus       127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            444444444443333334455555555555554442       223455555555555555555554443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=3.4e-20  Score=181.68  Aligned_cols=157  Identities=22%  Similarity=0.286  Sum_probs=136.0

Q ss_pred             cEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCc
Q 042537          505 ILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSN  584 (789)
Q Consensus       505 ~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  584 (789)
                      +.++++++.++ .+|..+.   ++++.|++++|++++..+..|..+++|+.|++++|++++..|..|.++++|       
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            56788888887 7887553   578899999999987777788889999999999999988888887776666       


Q ss_pred             cccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeec
Q 042537          585 LAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQI  664 (789)
Q Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  664 (789)
                                                                +.|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus        83 ------------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~  120 (220)
T 2v9t_B           83 ------------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR  120 (220)
T ss_dssp             ------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ------------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeC
Confidence                                                      88999999999666667889999999999999999888


Q ss_pred             CcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537          665 TPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       665 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  714 (789)
                      |..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.+.++.
T Consensus       121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            89999999999999999999988888899999999999999999887653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.6e-19  Score=200.35  Aligned_cols=190  Identities=24%  Similarity=0.342  Sum_probs=130.8

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      .+++.|++++|.+++ +|..+  +++|+.|++++|+++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            367777777777775 45444  266777777777777 455   345677777777777775 454 443  7777777


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      ++|+++ .+|.    .+++|+.|++++|++++ +|.   .+++|+.|++++|++++ +|. |.  ++             
T Consensus       128 s~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~-------------  181 (571)
T 3cvr_A          128 DNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES-------------  181 (571)
T ss_dssp             CSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT-------------
T ss_pred             CCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC-------------
Confidence            777777 3665    36777777777777775 444   46677777887777775 333 32  22             


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccC-------cEEEccCCccee
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGL-------VALNLSRNNLTG  662 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~  662 (789)
                                                          |+.|+|++|+|+ .+|. |..  +|       +.|+|++|+|+ 
T Consensus       182 ------------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-  220 (571)
T 3cvr_A          182 ------------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-  220 (571)
T ss_dssp             ------------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred             ------------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence                                                377788888777 5555 544  56       88888888888 


Q ss_pred             ecCcccccCCCCCEEeCCCCcccccCchhhhcCCC
Q 042537          663 QITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSR  697 (789)
Q Consensus       663 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  697 (789)
                      .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus       221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            57777777888888888888888888887776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.1e-19  Score=176.78  Aligned_cols=133  Identities=23%  Similarity=0.213  Sum_probs=61.8

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      +++++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            34455555555554444444445555555555555555444444444555555555555554444444444445555555


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNI  563 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  563 (789)
                      ++|+++ .++...+..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus       108 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          108 NTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            555444 33333222344444444444444433333344444444444444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=3.3e-19  Score=197.88  Aligned_cols=182  Identities=25%  Similarity=0.363  Sum_probs=153.5

Q ss_pred             CCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEc
Q 042537          455 RLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSL  534 (789)
Q Consensus       455 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L  534 (789)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|+++ .+|. +.   .+|+.|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP---ASLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC---TTCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh---cCCCEEEC
Confidence            89999999999996 66655  378999999999999 556   45789999999999999 5888 44   29999999


Q ss_pred             CCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeec
Q 042537          535 KSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKG  614 (789)
Q Consensus       535 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  614 (789)
                      ++|++++ +|.   .+++|+.|++++|.+++ +|.   .++                                       
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~---------------------------------------  160 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPT---------------------------------------  160 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCT---------------------------------------
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCC---------------------------------------
Confidence            9999997 565   68999999999999986 443   222                                       


Q ss_pred             cccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCC-------CEEeCCCCccccc
Q 042537          615 SQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSL-------DFLDLSQNQFVGG  687 (789)
Q Consensus       615 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~  687 (789)
                                +|+.|++++|++++ +|. |.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .
T Consensus       161 ----------~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~  221 (571)
T 3cvr_A          161 ----------SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-H  221 (571)
T ss_dssp             ----------TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-C
T ss_pred             ----------CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-e
Confidence                      34899999999996 776 66  89999999999999 6777 655  77       99999999999 5


Q ss_pred             CchhhhcCCCCCeEeccCCcccccCCC
Q 042537          688 IPSSLCQLSRLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       688 ~p~~l~~l~~L~~L~ls~N~l~~~~p~  714 (789)
                      +|..+..+++|++|++++|++++.+|.
T Consensus       222 lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          222 IPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            788888899999999999999998774

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=7.1e-19  Score=173.56  Aligned_cols=157  Identities=23%  Similarity=0.215  Sum_probs=135.7

Q ss_pred             CcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCC
Q 042537          504 LILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS  583 (789)
Q Consensus       504 L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  583 (789)
                      -+.++.+++.+. .+|..+.   ++|++|++++|++++..|..+..+++|++|++++|+++...+..|..+++|      
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------   90 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------   90 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence            457888888887 7887653   788999999999988888888899999999999999886666666665555      


Q ss_pred             ccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceee
Q 042537          584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ  663 (789)
Q Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  663 (789)
                                                                 +.|+|++|++++..+..|..+++|++|+|++|+|+ .
T Consensus        91 -------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~  126 (229)
T 3e6j_A           91 -------------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-E  126 (229)
T ss_dssp             -------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-S
T ss_pred             -------------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-c
Confidence                                                       89999999999777777899999999999999999 7


Q ss_pred             cCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537          664 ITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       664 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  714 (789)
                      +|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.++.
T Consensus       127 lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            889999999999999999999988878899999999999999999988773

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=3.1e-19  Score=189.48  Aligned_cols=181  Identities=23%  Similarity=0.226  Sum_probs=153.2

Q ss_pred             ccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhh-cCCCCcEEEcCCCcccccCCCCccCCCcCceEec
Q 042537          480 IQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGE-GLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDL  558 (789)
Q Consensus       480 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  558 (789)
                      -+.++++++.++. +|..+.  +.++.|++++|+++ .++...+. ++++|+.|+|++|++++..+..|.++++|++|+|
T Consensus        20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            3689999999984 565443  46899999999999 56655554 7899999999999999888888999999999999


Q ss_pred             cCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCcccc
Q 042537          559 SLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSG  638 (789)
Q Consensus       559 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  638 (789)
                      ++|++++..+..|..+++|                                                 +.|+|++|+|++
T Consensus        96 s~N~l~~~~~~~~~~l~~L-------------------------------------------------~~L~L~~N~i~~  126 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQAL-------------------------------------------------EVLLLYNNHIVV  126 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTC-------------------------------------------------CEEECCSSCCCE
T ss_pred             CCCcCCcCCHHHhCCCcCC-------------------------------------------------CEEECCCCcccE
Confidence            9999998777777766655                                                 899999999998


Q ss_pred             ccchhhhccccCcEEEccCCcceeecCccc---ccCCCCCEEeCCCCcccccCchhhhcCCC--CCeEeccCCcccccCC
Q 042537          639 TIPEEIMDLVGLVALNLSRNNLTGQITPKI---DQLKSLDFLDLSQNQFVGGIPSSLCQLSR--LSVMNLSYNNLSGKIP  713 (789)
Q Consensus       639 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N~l~~~~p  713 (789)
                      ..|..|..+++|+.|+|++|+|++..+..|   ..+++|+.|||++|+|++..+..+..++.  ++.|++++|++.+.+.
T Consensus       127 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            889999999999999999999996444445   67999999999999999887788998887  4899999999988765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=5.2e-19  Score=187.70  Aligned_cols=178  Identities=24%  Similarity=0.242  Sum_probs=152.6

Q ss_pred             cEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCcc-CCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcC
Q 042537          457 AVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFK-SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLK  535 (789)
Q Consensus       457 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~  535 (789)
                      +.++++++.++ .+|..+.  ..++.|++++|.+++..+..|. ++++|++|++++|+|+ .++...+.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence            68999999999 4666553  4689999999999999888888 9999999999999999 5665545589999999999


Q ss_pred             CCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeecc
Q 042537          536 SNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGS  615 (789)
Q Consensus       536 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  615 (789)
                      +|++++..+..|..+++|+.|+|++|++++..|..|..+++|                                      
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--------------------------------------  138 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL--------------------------------------  138 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC--------------------------------------
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC--------------------------------------
Confidence            999998888889999999999999999998888888777666                                      


Q ss_pred             ccccccccCceeEEEcccCccccccchhh---hccccCcEEEccCCcceeecCcccccCCC--CCEEeCCCCccccc
Q 042537          616 QHEYRSTLGLVKILDFSMNKLSGTIPEEI---MDLVGLVALNLSRNNLTGQITPKIDQLKS--LDFLDLSQNQFVGG  687 (789)
Q Consensus       616 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~  687 (789)
                                 +.|+|++|++++..+..|   ..+++|+.|+|++|+|++..+..+..++.  ++.|+|++|.+...
T Consensus       139 -----------~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          139 -----------QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             -----------CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             -----------CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence                       899999999996555555   67999999999999999766677888887  48999999999753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.6e-18  Score=176.18  Aligned_cols=78  Identities=24%  Similarity=0.296  Sum_probs=51.5

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCC
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN  706 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  706 (789)
                      +.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++. | .+..+++|+.|++++|
T Consensus       137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEE
T ss_pred             CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCC
Confidence            6666666666643  456667777777777777765433  66777777777777777643 3 3667777777777777


Q ss_pred             cccc
Q 042537          707 NLSG  710 (789)
Q Consensus       707 ~l~~  710 (789)
                      +++.
T Consensus       211 ~i~~  214 (291)
T 1h6t_A          211 ECLN  214 (291)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            7654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2.8e-18  Score=167.99  Aligned_cols=156  Identities=21%  Similarity=0.209  Sum_probs=112.2

Q ss_pred             EEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCC
Q 042537          482 TLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLN  561 (789)
Q Consensus       482 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  561 (789)
                      .+++++|.++. +|..+.  ..+++|++++|++++..+...+..+++|++|++++|++++..+..|.++++|++|++++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            45555555542 233221  234566666666653334333445677777777777777666667777888888888888


Q ss_pred             cccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccc
Q 042537          562 NISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIP  641 (789)
Q Consensus       562 ~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  641 (789)
                      ++++..+..|..+++|                                                 +.|+|++|++++..|
T Consensus        92 ~l~~~~~~~~~~l~~L-------------------------------------------------~~L~Ls~N~l~~~~~  122 (220)
T 2v70_A           92 RLENVQHKMFKGLESL-------------------------------------------------KTLMLRSNRITCVGN  122 (220)
T ss_dssp             CCCCCCGGGGTTCSSC-------------------------------------------------CEEECTTSCCCCBCT
T ss_pred             ccCccCHhHhcCCcCC-------------------------------------------------CEEECCCCcCCeECH
Confidence            8877766666665555                                                 788888888887778


Q ss_pred             hhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCc
Q 042537          642 EEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIP  689 (789)
Q Consensus       642 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  689 (789)
                      ..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.+.+..+
T Consensus       123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            888889999999999999998888889999999999999999986554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1e-18  Score=179.22  Aligned_cols=173  Identities=24%  Similarity=0.359  Sum_probs=112.1

Q ss_pred             ccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCc
Q 042537          451 MQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLV  530 (789)
Q Consensus       451 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~  530 (789)
                      ..+++|+.|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++|.++ .+|. +. .+++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LK-DLKKLK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-GT-TCTTCC
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-hc-cCCCCC
Confidence            4455566666666666533 2 35556666666666666664433  666666666666666665 3443 32 566777


Q ss_pred             EEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEE
Q 042537          531 VLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVL  610 (789)
Q Consensus       531 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (789)
                      +|++++|++++.  ..+..+++|+.|++++|++++.  ..+..+++                                  
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~----------------------------------  157 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTK----------------------------------  157 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTT----------------------------------
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCC----------------------------------
Confidence            777777776643  3466677777777777777644  23333333                                  


Q ss_pred             EeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCccccc
Q 042537          611 TWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGG  687 (789)
Q Consensus       611 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  687 (789)
                                     |+.|++++|++++..|  +..+++|+.|+|++|++++ ++ .+..+++|+.|++++|+++..
T Consensus       158 ---------------L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          158 ---------------LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             ---------------CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             ---------------CCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence                           3778888888875544  7788888888888888875 33 478888888888888888753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=1.8e-17  Score=162.20  Aligned_cols=141  Identities=21%  Similarity=0.260  Sum_probs=91.5

Q ss_pred             CEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCC
Q 042537          433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKN  512 (789)
Q Consensus       433 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n  512 (789)
                      +.++.+++.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45666666665 3444332  45666677777666666666666667777777777776666666777777777777777


Q ss_pred             cccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccC
Q 042537          513 GLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGM  577 (789)
Q Consensus       513 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  577 (789)
                      +++ .+|...+.++++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|
T Consensus        91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  154 (220)
T 2v9t_B           91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI  154 (220)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence            776 6666555566777777777777776666667777777777777777766655555544444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=3e-18  Score=163.94  Aligned_cols=110  Identities=24%  Similarity=0.327  Sum_probs=73.0

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCC
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN  706 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  706 (789)
                      +.|++++|++++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..|..|..+++|++|++++|
T Consensus        57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            66666666666666667777777777777777777766666777777777777777777777777777777777777777


Q ss_pred             cccccCCCCCccccccccccCCCCCCCCCC
Q 042537          707 NLSGKIPLGTQLQSFNASVYAGNPELCGLP  736 (789)
Q Consensus       707 ~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  736 (789)
                      ++.|.++.......+....+.++...|+.|
T Consensus       137 ~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          137 PFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            777776643222222222344444555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=5.3e-18  Score=190.55  Aligned_cols=190  Identities=23%  Similarity=0.264  Sum_probs=124.7

Q ss_pred             CcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEcc
Q 042537          407 ASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLY  486 (789)
Q Consensus       407 L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  486 (789)
                      +..+.+..+.+.+..+....   +.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|+
T Consensus        23 l~~l~l~~~~i~~~~~~~~L---~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQNEL---NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHTTCSCTTSEECHHHH---TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHhccCCCcccccchhcC---CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            34455566666555443222   6777788888877643 3 47777788888888887775444  7777778888888


Q ss_pred             CCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccccc
Q 042537          487 NNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI  566 (789)
Q Consensus       487 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  566 (789)
                      +|.+.+.  ..+..+++|+.|+|++|.+. .++. +. .+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+++.
T Consensus        96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           96 ENKIKDL--SSLKDLKKLKSLSLEHNGIS-DING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             SSCCCCC--TTSTTCTTCCEEECTTSCCC-CCGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             CCCCCCC--hhhccCCCCCEEEecCCCCC-CCcc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            8777642  25777777777777777777 4443 33 577777777777777754  4566777777777777777655


Q ss_pred             CCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhc
Q 042537          567 IPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMD  646 (789)
Q Consensus       567 ~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  646 (789)
                      .|  +..+++|                                                 +.|+|++|++++. | .+..
T Consensus       169 ~~--l~~l~~L-------------------------------------------------~~L~Ls~N~i~~l-~-~l~~  195 (605)
T 1m9s_A          169 VP--LAGLTKL-------------------------------------------------QNLYLSKNHISDL-R-ALAG  195 (605)
T ss_dssp             GG--GTTCTTC-------------------------------------------------CEEECCSSCCCBC-G-GGTT
T ss_pred             hh--hccCCCC-------------------------------------------------CEEECcCCCCCCC-h-HHcc
Confidence            44  3333333                                                 6777777777643 3 4666


Q ss_pred             cccCcEEEccCCcceee
Q 042537          647 LVGLVALNLSRNNLTGQ  663 (789)
Q Consensus       647 l~~L~~L~Ls~N~l~~~  663 (789)
                      +++|+.|+|++|++++.
T Consensus       196 l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          196 LKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CTTCSEEECCSEEEECC
T ss_pred             CCCCCEEEccCCcCcCC
Confidence            77777777777777643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.4e-17  Score=187.12  Aligned_cols=148  Identities=26%  Similarity=0.281  Sum_probs=80.8

Q ss_pred             CCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEE
Q 042537          404 PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTL  483 (789)
Q Consensus       404 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  483 (789)
                      +..|+.|++++|.+..... +.  .+++|+.|+|++|.+++..+  +..+++|+.|+|++|.+.+ ++ .+..+++|+.|
T Consensus        42 L~~L~~L~l~~n~i~~l~~-l~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQG-IQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTT-GG--GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             CCCCCEEECcCCCCCCChH-Hc--cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            4455666666665554432 11  12556666666666654333  5556666666666666653 22 45556666666


Q ss_pred             EccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcc
Q 042537          484 SLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNI  563 (789)
Q Consensus       484 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  563 (789)
                      +|++|.+.+.  ..+..+++|+.|+|++|.++ .+ ..+. .+++|+.|+|++|++.+..|  +..+++|+.|+|++|++
T Consensus       115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          115 SLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DI-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCSEEECCSSCCC-CC-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EecCCCCCCC--ccccCCCccCEEECCCCccC-Cc-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            6666665542  23555666666666666665 33 2222 45666666666666654443  55566666666666655


Q ss_pred             cc
Q 042537          564 SG  565 (789)
Q Consensus       564 ~~  565 (789)
                      ++
T Consensus       188 ~~  189 (605)
T 1m9s_A          188 SD  189 (605)
T ss_dssp             CB
T ss_pred             CC
Confidence            54

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=4.9e-17  Score=160.33  Aligned_cols=153  Identities=19%  Similarity=0.133  Sum_probs=130.5

Q ss_pred             cEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccC
Q 042537          408 SVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYN  487 (789)
Q Consensus       408 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  487 (789)
                      +.++.+++.+...+....    ++|++|++++|.+++..+..|..+++|+.|++++|++....+..|..+++|++|++++
T Consensus        22 ~~v~c~~~~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCcCccCCCCC----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            345555555544443222    6789999999999988888999999999999999999877777889999999999999


Q ss_pred             CeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccccc
Q 042537          488 NSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI  566 (789)
Q Consensus       488 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  566 (789)
                      |++++..+..|..+++|++|++++|+++ .+|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            9999888888899999999999999999 8998886 799999999999999977777889999999999999998743

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.4e-17  Score=160.17  Aligned_cols=152  Identities=16%  Similarity=0.216  Sum_probs=97.1

Q ss_pred             CCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCccc
Q 042537          501 CSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQK  580 (789)
Q Consensus       501 l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  580 (789)
                      +++|+.|++++|.++ .+| .+. .+++|++|++++|.+..  +..+..+++|++|++++|++++..+..+..+++|   
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---  114 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL---  114 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC---
T ss_pred             cCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC---
Confidence            344444555555544 444 222 45555555555554431  2245566666666666666665555555444444   


Q ss_pred             CCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCc-
Q 042537          581 SSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNN-  659 (789)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-  659 (789)
                                                                    +.|++++|++++..|..++.+++|++|++++|+ 
T Consensus       115 ----------------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~  148 (197)
T 4ezg_A          115 ----------------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA  148 (197)
T ss_dssp             ----------------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB
T ss_pred             ----------------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC
Confidence                                                          677777777776677778888888888888887 


Q ss_pred             ceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccc
Q 042537          660 LTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSG  710 (789)
Q Consensus       660 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  710 (789)
                      ++ .+| .+..+++|+.|++++|++++. + .+..+++|++|++++|++.+
T Consensus       149 i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          149 IT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             cc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            55 454 578888888888888888753 3 67888888888888888753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=7.8e-18  Score=169.74  Aligned_cols=169  Identities=17%  Similarity=0.213  Sum_probs=100.7

Q ss_pred             CcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEe
Q 042537          478 HSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILD  557 (789)
Q Consensus       478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  557 (789)
                      .++..+++++|.++...  .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++++..+  +..+++|+.|+
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            33444445555444322  3444555555555555554 444 222 45555566665555554333  55566666666


Q ss_pred             ccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccc
Q 042537          558 LSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLS  637 (789)
Q Consensus       558 Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  637 (789)
                      +++|++++..+.  ..                                                  +.|+.|++++|+++
T Consensus        92 L~~N~l~~l~~~--~~--------------------------------------------------~~L~~L~L~~N~l~  119 (263)
T 1xeu_A           92 VNRNRLKNLNGI--PS--------------------------------------------------ACLSRLFLDNNELR  119 (263)
T ss_dssp             CCSSCCSCCTTC--CC--------------------------------------------------SSCCEEECCSSCCS
T ss_pred             CCCCccCCcCcc--cc--------------------------------------------------CcccEEEccCCccC
Confidence            666665542110  00                                                  22367777777776


Q ss_pred             cccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccccc
Q 042537          638 GTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGK  711 (789)
Q Consensus       638 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  711 (789)
                      + ++ .+..+++|+.|+|++|++++. + .+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       120 ~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          120 D-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             B-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             C-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            4 33 477777788888888887753 3 577778888888888888765  5677778888888888887654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=2.1e-17  Score=158.07  Aligned_cols=175  Identities=21%  Similarity=0.243  Sum_probs=130.2

Q ss_pred             cEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCC-CccCCCcCceEeccCCcccccCCccccccccCcccCCC
Q 042537          505 ILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPF-QVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS  583 (789)
Q Consensus       505 ~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  583 (789)
                      +++++++|+++ .+|..++   .++++|++++|++++..+. .+..+++|++|++++|++++..|..|..+++|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            67888888886 7887654   3788888888888866654 47888899999999999988888777776666      


Q ss_pred             ccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceee
Q 042537          584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ  663 (789)
Q Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  663 (789)
                                                                 +.|+|++|++++..|..|..+++|++|+|++|++++.
T Consensus        81 -------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  117 (192)
T 1w8a_A           81 -------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             -------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             -------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence                                                       8899999999988888899999999999999999999


Q ss_pred             cCcccccCCCCCEEeCCCCcccccCchh-hhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCC
Q 042537          664 ITPKIDQLKSLDFLDLSQNQFVGGIPSS-LCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP  736 (789)
Q Consensus       664 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  736 (789)
                      +|..|..+++|+.|+|++|.+.+..+-. +.  ..++...+..+...+..|..  ++......+..+...|..+
T Consensus       118 ~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~  187 (192)
T 1w8a_A          118 MPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred             CHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCC
Confidence            9999999999999999999998776521 21  11222344555556666643  2222333344555556543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=2.1e-19  Score=200.88  Aligned_cols=84  Identities=29%  Similarity=0.352  Sum_probs=43.3

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccC-chhhhcCCCCCeEeccC
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGI-PSSLCQLSRLSVMNLSY  705 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~  705 (789)
                      +.|+|++|+|+ .+|..|+.+++|+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.+ |..+..+++|+.|++++
T Consensus       466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~  542 (567)
T 1dce_A          466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG  542 (567)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence            44555555554 444455555555555555555553 33 4555555555555555555444 55555555555555555


Q ss_pred             CcccccCC
Q 042537          706 NNLSGKIP  713 (789)
Q Consensus       706 N~l~~~~p  713 (789)
                      |++++.+|
T Consensus       543 N~l~~~~~  550 (567)
T 1dce_A          543 NSLCQEEG  550 (567)
T ss_dssp             SGGGGSSS
T ss_pred             CcCCCCcc
Confidence            55554444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=6.4e-18  Score=195.05  Aligned_cols=118  Identities=25%  Similarity=0.295  Sum_probs=52.8

Q ss_pred             CcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcC
Q 042537          447 PDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGL  526 (789)
Q Consensus       447 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l  526 (789)
                      +..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|.|+ .+|..+. .+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-SC  292 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-GG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-CC
Confidence            444444555555555555544 33333334444555555555444 34444444444444444444444 4444443 34


Q ss_pred             CCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCc
Q 042537          527 PKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPK  569 (789)
Q Consensus       527 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  569 (789)
                      ++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|.
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence            44444444444443 3344444444444444444444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=4.4e-17  Score=156.74  Aligned_cols=154  Identities=18%  Similarity=0.232  Sum_probs=101.1

Q ss_pred             cccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCc
Q 042537          475 GFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQ  554 (789)
Q Consensus       475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  554 (789)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .++ .+. .+++|++|++++|++++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            34455566666666555 233 4555666666666666554 333 233 567777777777777766666777777778


Q ss_pred             eEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccC
Q 042537          555 ILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMN  634 (789)
Q Consensus       555 ~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  634 (789)
                      +|++++|.+++..|..+..+++|                                                 +.|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L-------------------------------------------------~~L~L~~n  146 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKV-------------------------------------------------NSIDLSYN  146 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSC-------------------------------------------------CEEECCSC
T ss_pred             EEEecCCccCcHhHHHHhhCCCC-------------------------------------------------CEEEccCC
Confidence            88888777776555555544444                                                 77888888


Q ss_pred             c-cccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccc
Q 042537          635 K-LSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVG  686 (789)
Q Consensus       635 ~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  686 (789)
                      + ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       147 ~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          147 GAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             TBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            7 54 455 57888888888888888875 33 67888888888888888753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.1e-17  Score=168.50  Aligned_cols=78  Identities=15%  Similarity=0.248  Sum_probs=37.4

Q ss_pred             CCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCC
Q 042537          432 LEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGK  511 (789)
Q Consensus       432 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~  511 (789)
                      +..++++++.+++..  .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            444455555554222  34455555555555555542 22 34445555555555555543322  44455555555555


Q ss_pred             Cccc
Q 042537          512 NGLS  515 (789)
Q Consensus       512 n~l~  515 (789)
                      |+++
T Consensus        95 N~l~   98 (263)
T 1xeu_A           95 NRLK   98 (263)
T ss_dssp             SCCS
T ss_pred             CccC
Confidence            5544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.6e-19  Score=201.84  Aligned_cols=188  Identities=20%  Similarity=0.172  Sum_probs=96.8

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCc-------------CCCCCCccccCCCCCcEEe-ccCccCC
Q 042537           72 LKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAE-------------FEGPIPSQLGNLSRLKYLD-LSYINLN  137 (789)
Q Consensus        72 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~~~p~~~~~l~~L~~L~-Ls~n~l~  137 (789)
                      ..+++|+.|+|++|+++  .+|..++.|++|+.|++++|.             +.+..|..++++++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            44556666666666655  356666666666666665543             2333444444455555554 3333322


Q ss_pred             CCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcc
Q 042537          138 KSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG  217 (789)
Q Consensus       138 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~  217 (789)
                      .+             +.+.+++|.+....+          ..|+.|++++|.+++ +|. +..+ ++|+.|+|++|.++ 
T Consensus       424 ~L-------------~~l~l~~n~i~~l~~----------~~L~~L~Ls~n~l~~-lp~-~~~l-~~L~~L~Ls~N~l~-  476 (567)
T 1dce_A          424 DL-------------RSKFLLENSVLKMEY----------ADVRVLHLAHKDLTV-LCH-LEQL-LLVTHLDLSHNRLR-  476 (567)
T ss_dssp             HH-------------HHHHHHHHHHHHHHH----------TTCSEEECTTSCCSS-CCC-GGGG-TTCCEEECCSSCCC-
T ss_pred             hh-------------hhhhhhcccccccCc----------cCceEEEecCCCCCC-CcC-cccc-ccCcEeecCccccc-
Confidence            11             111111222211111          345555555555553 333 3333 36666666666666 


Q ss_pred             cCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCcc-ChhhhhcCCCCcEEEccCC
Q 042537          218 SLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVV-TESVFSELSNLKALHLDDN  296 (789)
Q Consensus       218 ~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n  296 (789)
                      .+|..|+++++|+.|+|+          +|.+++ +| .++.+++|++|+|++|++++.. |. .+..+++|+.|++++|
T Consensus       477 ~lp~~~~~l~~L~~L~Ls----------~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          477 ALPPALAALRCLEVLQAS----------DNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             CCCGGGGGCTTCCEEECC----------SSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTS
T ss_pred             ccchhhhcCCCCCEEECC----------CCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCC
Confidence            445566666666666666          333333 23 4666666666666666666443 33 4666666666666666


Q ss_pred             ccccc
Q 042537          297 SFTLK  301 (789)
Q Consensus       297 ~i~~~  301 (789)
                      ++++.
T Consensus       544 ~l~~~  548 (567)
T 1dce_A          544 SLCQE  548 (567)
T ss_dssp             GGGGS
T ss_pred             cCCCC
Confidence            66543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.1e-17  Score=193.23  Aligned_cols=202  Identities=21%  Similarity=0.175  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhhcCcCC-CCCCCCCCCCCCCCCCCceeeeEecCCCCcEEEEEcCCCCCCCCcccccCccccCCCCCCE-
Q 042537            2 EEEREALLEFKQSLVDE-YGILSSWGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRH-   79 (789)
Q Consensus         2 ~~~~~~ll~~~~~~~~~-~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~l~~~l~~~~~~l~~L~~-   79 (789)
                      +.++++|+++..+...+ ...-..|..  ..+..+.|.++.+.  ..++++|+|.+    +.+.. .+..+.....|+. 
T Consensus       131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s--~~~~~~l~L~~----n~~~~-~~~~~l~~l~Ls~~  201 (727)
T 4b8c_D          131 DCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVS--TPLTPKIELFA----NGKDE-ANQALLQHKKLSQY  201 (727)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             ccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceec--CCccceEEeeC----CCCCc-chhhHhhcCccCcc
Confidence            34678899998876422 233456752  45567889888775  46788888876    33332 2222222211221 


Q ss_pred             ----EeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEE
Q 042537           80 ----LDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTL  155 (789)
Q Consensus        80 ----L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L  155 (789)
                          ++++.|.+.  ..+..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++.   +|..|+++++|++|
T Consensus       202 ~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L  275 (727)
T 4b8c_D          202 SIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTE---LPAEIKNLSNLRVL  275 (727)
T ss_dssp             ----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSC---CCGGGGGGTTCCEE
T ss_pred             cccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcc---cChhhhCCCCCCEE
Confidence                222222222  13455566666666666666665 455555566666666666666664   44556666666666


Q ss_pred             EcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhc
Q 042537          156 NLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDR  225 (789)
Q Consensus       156 ~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  225 (789)
                      +|++|.++ .+|  ..+..+  ++|++|+|++|.++ .+|..+..+. +|++|+|++|.+++.+|..+..
T Consensus       276 ~Ls~N~l~-~lp--~~~~~l--~~L~~L~L~~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          276 DLSHNRLT-SLP--AELGSC--FQLKYFYFFDNMVT-TLPWEFGNLC-NLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             ECTTSCCS-SCC--SSGGGG--TTCSEEECCSSCCC-CCCSSTTSCT-TCCCEECTTSCCCSHHHHHHHH
T ss_pred             eCcCCcCC-ccC--hhhcCC--CCCCEEECCCCCCC-ccChhhhcCC-CccEEeCCCCccCCCChHHHhh
Confidence            66666665 334  223344  66666666666664 5555544333 6666666666666655555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=1.9e-16  Score=151.31  Aligned_cols=88  Identities=27%  Similarity=0.302  Sum_probs=74.3

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCC
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN  706 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  706 (789)
                      +.|++++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|+|+...+..|..+++|+.|++++|
T Consensus        57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            67777777777667777888888999999999998777778889999999999999999777778889999999999999


Q ss_pred             cccccCCC
Q 042537          707 NLSGKIPL  714 (789)
Q Consensus       707 ~l~~~~p~  714 (789)
                      ++.+.+..
T Consensus       137 ~~~C~c~l  144 (193)
T 2wfh_A          137 PLYCDCNM  144 (193)
T ss_dssp             CEECSGGG
T ss_pred             CeecCCcC
Confidence            99877653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=7.4e-16  Score=144.05  Aligned_cols=133  Identities=22%  Similarity=0.208  Sum_probs=111.0

Q ss_pred             CCCCcEEEcCCCccc-ccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccc
Q 042537          526 LPKLVVLSLKSNKFH-GNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESY  604 (789)
Q Consensus       526 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  604 (789)
                      .++|+.|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+..+++                            
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~----------------------------   72 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPK----------------------------   72 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSS----------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCC----------------------------
Confidence            467888888888887 56777788889999999999988765  44444444                            


Q ss_pred             cceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeec-CcccccCCCCCEEeCCCCc
Q 042537          605 VDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQI-TPKIDQLKSLDFLDLSQNQ  683 (789)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~  683 (789)
                                           |+.|++++|++++.+|..+..+++|++|+|++|++++.. +..+..+++|+.|++++|+
T Consensus        73 ---------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A           73 ---------------------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             ---------------------CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             ---------------------CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence                                 489999999999778888888999999999999998642 2788999999999999999


Q ss_pred             ccccCc---hhhhcCCCCCeEeccCCccc
Q 042537          684 FVGGIP---SSLCQLSRLSVMNLSYNNLS  709 (789)
Q Consensus       684 l~~~~p---~~l~~l~~L~~L~ls~N~l~  709 (789)
                      +++..+   ..+..+++|++|++++|.+.
T Consensus       132 l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          132 VTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            997766   58899999999999999886

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.5e-15  Score=158.82  Aligned_cols=219  Identities=12%  Similarity=0.052  Sum_probs=138.9

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCee----eeeCCcCccCCCCCc
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSL----IGELPSFFKSCSQLI  505 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~  505 (789)
                      ++|+.+++.+ .++.+.+.+|.++++|+.+++.+|.+..+.+.+|..+.++..+....+..    .......|.++..|+
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE  179 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence            6677777766 66655666677777777777777776666666666666666555544221    112233455555555


Q ss_pred             -EEeCCCCcccccCchhhhhc---CCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccC
Q 042537          506 -LMDLGKNGLSGEIPTWIGEG---LPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKS  581 (789)
Q Consensus       506 -~L~ls~n~l~~~~p~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  581 (789)
                       .+++....   .++..++..   ..+++.+.+.++-...........+++|+.+++++|+++.+.+.+|.++.+|    
T Consensus       180 ~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L----  252 (329)
T 3sb4_A          180 TTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL----  252 (329)
T ss_dssp             EEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC----
T ss_pred             eeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC----
Confidence             44444321   233333221   2344444444331110000001136788888888888887777777777666    


Q ss_pred             CCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCc-EEEccCCcc
Q 042537          582 SSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLV-ALNLSRNNL  660 (789)
Q Consensus       582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l  660 (789)
                                                                   +.+++++| ++.+.+..|.++++|+ .+++.+ ++
T Consensus       253 ---------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l  285 (329)
T 3sb4_A          253 ---------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV  285 (329)
T ss_dssp             ---------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred             ---------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence                                                         77888877 6666667788888888 888887 77


Q ss_pred             eeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEec
Q 042537          661 TGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNL  703 (789)
Q Consensus       661 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  703 (789)
                      +...+.+|.++++|+.+++++|+++.+.+..|.++++|+.++.
T Consensus       286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          286 TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            7666788888888888888888888777788888888888763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=9.6e-16  Score=140.08  Aligned_cols=129  Identities=19%  Similarity=0.210  Sum_probs=104.6

Q ss_pred             CCCCcEEEcCCCccc-ccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccc
Q 042537          526 LPKLVVLSLKSNKFH-GNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESY  604 (789)
Q Consensus       526 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  604 (789)
                      .++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++                            
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~----------------------------   65 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK----------------------------   65 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence            357888888888887 66777778888888888888888755  34444433                            


Q ss_pred             cceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceee-cCcccccCCCCCEEeCCCCc
Q 042537          605 VDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ-ITPKIDQLKSLDFLDLSQNQ  683 (789)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~  683 (789)
                                           |+.|++++|++++.+|..+..+++|++|++++|++++. .+..+..+++|+.|++++|+
T Consensus        66 ---------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           66 ---------------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             ---------------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             ---------------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence                                 48899999999877888888899999999999999863 34788999999999999999


Q ss_pred             ccccCc---hhhhcCCCCCeEeccC
Q 042537          684 FVGGIP---SSLCQLSRLSVMNLSY  705 (789)
Q Consensus       684 l~~~~p---~~l~~l~~L~~L~ls~  705 (789)
                      +++..+   ..+..+++|++||+++
T Consensus       125 l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          125 VTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ccchHHHHHHHHHHCCCcccccCCC
Confidence            997766   5789999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=8.7e-16  Score=160.73  Aligned_cols=250  Identities=12%  Similarity=0.022  Sum_probs=169.2

Q ss_pred             CCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCccccc--------CCCCcEEEcCCCcCcccCCcccc
Q 042537          404 PSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQ--------FDRLAVLSLANNFFSGKIPKSMG  475 (789)
Q Consensus       404 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~  475 (789)
                      +++|+.|++++|++..........  +.+..+.+..|.   +.+.+|.+        +++|+.|++.+ .++.+.+.+|.
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~--~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~  121 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTY--PNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK  121 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSS--GGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred             hccCeEEecCcceeEEecCccccc--cccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence            567888888888887211111110  223455555553   33456667        88888888888 77777777888


Q ss_pred             ccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCccc---ccCchhhhhcCCCCc-EEEcCCCcc-cccCCCCccCC
Q 042537          476 FLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLS---GEIPTWIGEGLPKLV-VLSLKSNKF-HGNIPFQVCQL  550 (789)
Q Consensus       476 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~---~~~p~~~~~~l~~L~-~L~L~~n~l-~~~~~~~~~~l  550 (789)
                      ++++|+.+++++|.+..+.+..|.++.++..+....+...   ..+....+.++..|+ .+.+....- ...........
T Consensus       122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~  201 (329)
T 3sb4_A          122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP  201 (329)
T ss_dssp             TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred             cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence            8888888888888888788888888887777777664321   123333333556666 444443211 10000111134


Q ss_pred             CcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEE
Q 042537          551 SYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILD  630 (789)
Q Consensus       551 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  630 (789)
                      .+++.+.+.++-..    ..+..                                             +...++.|+.++
T Consensus       202 ~~~~~l~~~~~l~~----~~~~~---------------------------------------------l~~~~~~L~~l~  232 (329)
T 3sb4_A          202 RDINFLTIEGKLDN----ADFKL---------------------------------------------IRDYMPNLVSLD  232 (329)
T ss_dssp             GGCSEEEEEECCCH----HHHHH---------------------------------------------HHHHCTTCCEEE
T ss_pred             cccceEEEeeeecH----HHHHH---------------------------------------------HHHhcCCCeEEE
Confidence            55666666554111    01110                                             001245569999


Q ss_pred             cccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCC-EEeCCCCcccccCchhhhcCCCCCeEeccCCccc
Q 042537          631 FSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLD-FLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS  709 (789)
Q Consensus       631 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  709 (789)
                      +++|+++.+.+..|.++++|++|+|++| ++...+.+|.++++|+ .+++.+ +++.+.+.+|.++++|+.+++++|.+.
T Consensus       233 L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          233 ISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             CTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             CCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            9999999777788999999999999998 8877788899999999 999999 888788899999999999999999887


Q ss_pred             c
Q 042537          710 G  710 (789)
Q Consensus       710 ~  710 (789)
                      .
T Consensus       311 ~  311 (329)
T 3sb4_A          311 T  311 (329)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=2.3e-15  Score=141.99  Aligned_cols=88  Identities=24%  Similarity=0.206  Sum_probs=67.0

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCC
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYN  706 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  706 (789)
                      ++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            56666666666555555677788888888888888666666788888888888888888766666778888888888888


Q ss_pred             cccccCCC
Q 042537          707 NLSGKIPL  714 (789)
Q Consensus       707 ~l~~~~p~  714 (789)
                      ++.|.+|.
T Consensus       135 ~~~~~~~~  142 (177)
T 2o6r_A          135 PWDCSCPR  142 (177)
T ss_dssp             CBCCCHHH
T ss_pred             CeeccCcc
Confidence            88887763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=5.2e-15  Score=141.26  Aligned_cols=129  Identities=24%  Similarity=0.346  Sum_probs=103.1

Q ss_pred             cEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCc
Q 042537          505 ILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSN  584 (789)
Q Consensus       505 ~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  584 (789)
                      +.+++++|.++ .+|..+.   ++|++|++++|+++ .+|..+.++++|+.|++++|.+++..+..|..+++|       
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence            46777777777 7776543   57788888888887 566777888888888888888887777767666555       


Q ss_pred             cccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeec
Q 042537          585 LAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQI  664 (789)
Q Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  664 (789)
                                                                +.|+|++|++++..|..|..+++|+.|+|++|+|++..
T Consensus        81 ------------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  118 (193)
T 2wfh_A           81 ------------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP  118 (193)
T ss_dssp             ------------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             ------------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence                                                      78888888888777788999999999999999999766


Q ss_pred             CcccccCCCCCEEeCCCCccccc
Q 042537          665 TPKIDQLKSLDFLDLSQNQFVGG  687 (789)
Q Consensus       665 p~~~~~l~~L~~L~Ls~N~l~~~  687 (789)
                      +..|..+++|+.|+|++|.+...
T Consensus       119 ~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          119 EGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TTTTTTCTTCCEEECCSSCEECS
T ss_pred             hhhhhcCccccEEEeCCCCeecC
Confidence            66788999999999999998753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1e-14  Score=137.60  Aligned_cols=133  Identities=26%  Similarity=0.258  Sum_probs=109.4

Q ss_pred             CcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCC
Q 042537          504 LILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSS  583 (789)
Q Consensus       504 L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  583 (789)
                      .+.+++++|+++ .+|..+   .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|      
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------   78 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------   78 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence            467788888887 777554   3688888888888887666677888999999999998887666666655555      


Q ss_pred             ccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceee
Q 042537          584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQ  663 (789)
Q Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  663 (789)
                                                                 +.|++++|++++..+..|..+++|++|++++|++++.
T Consensus        79 -------------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  115 (177)
T 2o6r_A           79 -------------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV  115 (177)
T ss_dssp             -------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             -------------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEe
Confidence                                                       8899999999977777789999999999999999976


Q ss_pred             cCcccccCCCCCEEeCCCCcccccCc
Q 042537          664 ITPKIDQLKSLDFLDLSQNQFVGGIP  689 (789)
Q Consensus       664 ~p~~~~~l~~L~~L~Ls~N~l~~~~p  689 (789)
                      .+..+..+++|+.|++++|++.+..|
T Consensus       116 ~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          116 PDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CHHHhcCCcccCEEEecCCCeeccCc
Confidence            66667889999999999999997665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=6.2e-14  Score=149.59  Aligned_cols=220  Identities=11%  Similarity=0.063  Sum_probs=164.2

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      .+|+.+.+.. .++.+...+|.+|++|+.+++.+|+++.+...+|. ..+|+.+.+..+ +..+...+|.+|++|+.+++
T Consensus       157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            4688888876 56666777888888888888888888877777776 578888888855 67677788888888888888


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCccc-----ccCCccccccccCcccCCCc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNIS-----GIIPKCLNNFTGMAQKSSSN  584 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~l~~~~  584 (789)
                      ..+ ++ .++...|.+ .+|+.+.+ .+.++.+...+|.++++|+.+++.+|.+.     .+.+.+|.++++|       
T Consensus       234 ~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L-------  302 (401)
T 4fdw_A          234 PEN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL-------  302 (401)
T ss_dssp             CTT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC-------
T ss_pred             CCC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC-------
Confidence            875 55 677777755 78888888 45566666778888888888888877664     3444555555554       


Q ss_pred             cccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeec
Q 042537          585 LAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQI  664 (789)
Q Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  664 (789)
                                                                +.+++. +.++.+-...|.++++|+.++|..| ++...
T Consensus       303 ------------------------------------------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          303 ------------------------------------------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             ------------------------------------------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             ------------------------------------------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence                                                      677777 4466566677888888888888554 66566


Q ss_pred             CcccccCCCCCEEeCCCCcccccCchhhhcCC-CCCeEeccCCcc
Q 042537          665 TPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS-RLSVMNLSYNNL  708 (789)
Q Consensus       665 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l  708 (789)
                      +.+|.++ +|+.+++++|.+....+..|..++ .++.+++..+.+
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            7778888 888888888888777777777774 677777776654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=4.7e-15  Score=138.54  Aligned_cols=132  Identities=21%  Similarity=0.162  Sum_probs=106.4

Q ss_pred             CCCCEEEcCCCccc-cCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEe
Q 042537          430 HKLEFLDLSNNILS-GRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMD  508 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  508 (789)
                      ++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            67888888888887 56777788888888888888888865  6788888888999998888877777777788899999


Q ss_pred             CCCCcccccCc--hhhhhcCCCCcEEEcCCCcccccCC---CCccCCCcCceEeccCCcccc
Q 042537          509 LGKNGLSGEIP--TWIGEGLPKLVVLSLKSNKFHGNIP---FQVCQLSYIQILDLSLNNISG  565 (789)
Q Consensus       509 ls~n~l~~~~p--~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~  565 (789)
                      +++|.++ .+|  ..+. .+++|+.|++++|++++..+   ..+..+++|++|++++|.+..
T Consensus       102 Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            9999888 554  3443 68889999999998885544   367888899999999888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=4.4e-15  Score=135.65  Aligned_cols=128  Identities=21%  Similarity=0.217  Sum_probs=85.9

Q ss_pred             CCCcEEeCCCCccc-ccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCccc
Q 042537          502 SQLILMDLGKNGLS-GEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQK  580 (789)
Q Consensus       502 ~~L~~L~ls~n~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  580 (789)
                      ++|+.|++++|.++ +.+|..+. .+++|++|++++|++++.  ..+..+++|++|++++|.+++.+|..+..+++|   
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L---   90 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL---   90 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC---
T ss_pred             ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC---
Confidence            44555555555554 44554333 456666666666666544  456667777777777777776555555444444   


Q ss_pred             CCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccc-cchhhhccccCcEEEccCCc
Q 042537          581 SSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGT-IPEEIMDLVGLVALNLSRNN  659 (789)
Q Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~  659 (789)
                                                                    +.|++++|++++. .+..++.+++|++|++++|+
T Consensus        91 ----------------------------------------------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           91 ----------------------------------------------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             ----------------------------------------------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             ----------------------------------------------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence                                                          7788888888753 34778888888888888888


Q ss_pred             ceeecC---cccccCCCCCEEeCCC
Q 042537          660 LTGQIT---PKIDQLKSLDFLDLSQ  681 (789)
Q Consensus       660 l~~~~p---~~~~~l~~L~~L~Ls~  681 (789)
                      +++..+   ..+..+++|+.||+++
T Consensus       125 l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          125 VTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ccchHHHHHHHHHHCCCcccccCCC
Confidence            886555   4688888888888864

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.53  E-value=5.7e-13  Score=143.04  Aligned_cols=310  Identities=10%  Similarity=0.052  Sum_probs=151.8

Q ss_pred             CcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEcc
Q 042537          215 LQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLD  294 (789)
Q Consensus       215 i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  294 (789)
                      ++.+...+|.++.+|+.+.+.           +.++.....+|.++++|+.+++..+ ++ .++...|.++++|+.+.+.
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp-----------~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIP-----------STVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECC-----------TTCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred             EeEhHHHHhhCCCCceEEEeC-----------CCccCcchhHhhCCCCCcEEEeCCC-ce-Eccchhhcccccchhhccc
Confidence            444555667777777777774           2233334456777777777777654 44 5666667777777776665


Q ss_pred             CCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeecccccccc
Q 042537          295 DNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGK  374 (789)
Q Consensus       295 ~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~  374 (789)
                      .+ +.......|.....+........  ......+|..+++|+.+.+.++. .......| ..+.+|+.+.+..+ ++ .
T Consensus       126 ~~-l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F-~~c~~L~~i~l~~~-~~-~  198 (394)
T 4fs7_A          126 LM-LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLF-SGCGKLKSIKLPRN-LK-I  198 (394)
T ss_dssp             TT-CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTT-TTCTTCCBCCCCTT-CC-E
T ss_pred             Cc-eeeecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccc-cCCCCceEEEcCCC-ce-E
Confidence            43 33333444444433222222211  11223456777778777776543 22222233 22345666666554 22 3


Q ss_pred             CCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCC
Q 042537          375 LPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFD  454 (789)
Q Consensus       375 ~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  454 (789)
                      ++...+..+..|+.+.+..+...-                       ...++.. .+|+.+.+... ++.....+|..+.
T Consensus       199 I~~~~F~~~~~L~~i~~~~~~~~i-----------------------~~~~~~~-~~l~~i~ip~~-~~~i~~~~f~~~~  253 (394)
T 4fs7_A          199 IRDYCFAECILLENMEFPNSLYYL-----------------------GDFALSK-TGVKNIIIPDS-FTELGKSVFYGCT  253 (394)
T ss_dssp             ECTTTTTTCTTCCBCCCCTTCCEE-----------------------CTTTTTT-CCCCEEEECTT-CCEECSSTTTTCS
T ss_pred             eCchhhccccccceeecCCCceEe-----------------------ehhhccc-CCCceEEECCC-ceecccccccccc
Confidence            333345555555544443322110                       0001111 44555555432 2223344555555


Q ss_pred             CCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEc
Q 042537          455 RLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSL  534 (789)
Q Consensus       455 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L  534 (789)
                      .++.+.+..+... .....|..+..++.+....+.+   ....|..+.+|+.+.+.++ ++ .++...|.++.+|+.+++
T Consensus       254 ~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~l  327 (394)
T 4fs7_A          254 DLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDL  327 (394)
T ss_dssp             SCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECC
T ss_pred             cceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cc-eechhhhcCCCCCCEEEe
Confidence            6666665554333 4444555555555555544432   2334555555655555443 33 444444445555555555


Q ss_pred             CCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccC
Q 042537          535 KSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGM  577 (789)
Q Consensus       535 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  577 (789)
                      ..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|
T Consensus       328 p~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          328 PYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             CCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            432 44344445555555555555443 333333444444333

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.52  E-value=3.3e-13  Score=143.99  Aligned_cols=219  Identities=10%  Similarity=0.024  Sum_probs=152.5

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      .+|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+.+.+|.++++|+.+++.+|.++.+....|. +.+|+.+.+
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l  210 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL  210 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred             CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence            35677776655 554555666664 577777764 55556666777777777777777777766666665 467777777


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      ..+ ++ .++...|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+ .+.++.+...+|.++++|            
T Consensus       211 p~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L------------  273 (401)
T 4fdw_A          211 PVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPEL------------  273 (401)
T ss_dssp             CTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTC------------
T ss_pred             CCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCC------------
Confidence            643 55 666666666777777777664 44455555655 66777777 344555555566555555            


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccc-----cccchhhhccccCcEEEccCCcceeec
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLS-----GTIPEEIMDLVGLVALNLSRNNLTGQI  664 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~  664 (789)
                                                           +.+++.+|.+.     ...+..|.++++|+.++|. +.++...
T Consensus       274 -------------------------------------~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~  315 (401)
T 4fdw_A          274 -------------------------------------AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILG  315 (401)
T ss_dssp             -------------------------------------CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEEC
T ss_pred             -------------------------------------CEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEh
Confidence                                                 77888777664     4566788899999999998 4577677


Q ss_pred             CcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccc
Q 042537          665 TPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS  709 (789)
Q Consensus       665 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  709 (789)
                      ..+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+.
T Consensus       316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            788899999999999655 776777889888 8999999988654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=7.2e-16  Score=148.36  Aligned_cols=135  Identities=22%  Similarity=0.246  Sum_probs=101.9

Q ss_pred             CchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCccccccc
Q 042537          518 IPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQG  597 (789)
Q Consensus       518 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  597 (789)
                      +|..+. .+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+++|                    
T Consensus        40 l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L--------------------   95 (198)
T 1ds9_A           40 MDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL--------------------   95 (198)
T ss_dssp             CHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC--------------------
T ss_pred             hhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC--------------------
Confidence            333555 68888888888888875 55 7778888888888888887 345444444444                    


Q ss_pred             ccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecC-cccccCCCCCE
Q 042537          598 IEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQIT-PKIDQLKSLDF  676 (789)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~  676 (789)
                                                   +.|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|+.
T Consensus        96 -----------------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~  144 (198)
T 1ds9_A           96 -----------------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED  144 (198)
T ss_dssp             -----------------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred             -----------------------------CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence                                         888999998885 45 68888999999999999885332 46888899999


Q ss_pred             EeCCCCcccccCchh----------hhcCCCCCeEeccCCccc
Q 042537          677 LDLSQNQFVGGIPSS----------LCQLSRLSVMNLSYNNLS  709 (789)
Q Consensus       677 L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~  709 (789)
                      |++++|++.+.+|..          +..+++|++||  +|+++
T Consensus       145 L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            999999988776653          78889999887  66664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=3.4e-14  Score=133.69  Aligned_cols=81  Identities=21%  Similarity=0.266  Sum_probs=56.7

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCc--ccccCCCCCEEeCCCCcccccCch----hhhcCCCCCe
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITP--KIDQLKSLDFLDLSQNQFVGGIPS----SLCQLSRLSV  700 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~  700 (789)
                      +.|++++|++++..+..|..+++|++|+|++|+++ .+|.  .+..+++|+.|++++|.++. +|.    .+..+++|++
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccce
Confidence            56666666666444444577777777777777775 4554  67777888888888888774 444    3778888888


Q ss_pred             EeccCCccc
Q 042537          701 MNLSYNNLS  709 (789)
Q Consensus       701 L~ls~N~l~  709 (789)
                      ||+++|...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            888888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=3.8e-14  Score=133.37  Aligned_cols=135  Identities=17%  Similarity=0.179  Sum_probs=104.7

Q ss_pred             CccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCcccccccc
Q 042537          497 FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTG  576 (789)
Q Consensus       497 ~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  576 (789)
                      .+..+.+|++|++++|+++ .+|. +....++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3556777888888888877 5654 332345888888888888865  57788888999999999888765555555555


Q ss_pred             CcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccch--hhhccccCcEEE
Q 042537          577 MAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPE--EIMDLVGLVALN  654 (789)
Q Consensus       577 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~  654 (789)
                      |                                                 +.|++++|+++ .+|.  .+..+++|+.|+
T Consensus        90 L-------------------------------------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           90 L-------------------------------------------------TELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             C-------------------------------------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             C-------------------------------------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            5                                                 88999999986 5665  788999999999


Q ss_pred             ccCCcceeecCcc----cccCCCCCEEeCCCCcccc
Q 042537          655 LSRNNLTGQITPK----IDQLKSLDFLDLSQNQFVG  686 (789)
Q Consensus       655 Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~  686 (789)
                      +++|+++ .+|..    +..+++|+.||+++|.+..
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999998 55664    8899999999999998864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=1.3e-13  Score=128.56  Aligned_cols=89  Identities=24%  Similarity=0.204  Sum_probs=80.4

Q ss_pred             eeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccC
Q 042537          626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY  705 (789)
Q Consensus       626 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  705 (789)
                      ++.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            48899999999988888899999999999999999977777789999999999999999988888899999999999999


Q ss_pred             CcccccCCC
Q 042537          706 NNLSGKIPL  714 (789)
Q Consensus       706 N~l~~~~p~  714 (789)
                      |++.+.++.
T Consensus       112 N~~~c~c~~  120 (170)
T 3g39_A          112 NPWDCACSD  120 (170)
T ss_dssp             SCBCTTBGG
T ss_pred             CCCCCCchh
Confidence            999988774

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.46  E-value=1.7e-12  Score=139.39  Aligned_cols=63  Identities=11%  Similarity=0.133  Sum_probs=43.2

Q ss_pred             CcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCccccee
Q 042537          249 LNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLII  314 (789)
Q Consensus       249 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~  314 (789)
                      ++.....+|.++.+|+.+.+..+ ++ .++..+|.++++|+.+++..+ ++......|..+..|+.
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~  121 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKS  121 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCC
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchh
Confidence            34445567888999999999754 65 677778999999999998754 44444444444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=2.5e-15  Score=144.59  Aligned_cols=152  Identities=21%  Similarity=0.258  Sum_probs=98.8

Q ss_pred             CcccEEEccCCeeeeeCCc------CccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCC
Q 042537          478 HSIQTLSLYNNSLIGELPS------FFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLS  551 (789)
Q Consensus       478 ~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  551 (789)
                      ..++.++++.+.+.+..|.      .+..+++|++|++++|.++ .+| .+. .+++|++|++++|+++ .+|..+..++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchhhcCC
Confidence            3444444444444444443      5556666666666666666 355 333 5667777777777766 4555555667


Q ss_pred             cCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEc
Q 042537          552 YIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDF  631 (789)
Q Consensus       552 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  631 (789)
                      +|++|++++|++++. | .+..+++|                                                 +.|++
T Consensus        94 ~L~~L~L~~N~l~~l-~-~~~~l~~L-------------------------------------------------~~L~l  122 (198)
T 1ds9_A           94 TLEELWISYNQIASL-S-GIEKLVNL-------------------------------------------------RVLYM  122 (198)
T ss_dssp             HCSEEEEEEEECCCH-H-HHHHHHHS-------------------------------------------------SEEEE
T ss_pred             cCCEEECcCCcCCcC-C-ccccCCCC-------------------------------------------------CEEEC
Confidence            777777777777653 2 34444433                                                 78888


Q ss_pred             ccCccccccc-hhhhccccCcEEEccCCcceeecCcc----------cccCCCCCEEeCCCCcccc
Q 042537          632 SMNKLSGTIP-EEIMDLVGLVALNLSRNNLTGQITPK----------IDQLKSLDFLDLSQNQFVG  686 (789)
Q Consensus       632 s~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~L~Ls~N~l~~  686 (789)
                      ++|++++..+ ..+..+++|++|++++|++++.+|..          +..+++|+.||  +|.++.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            8888874332 46888888999999999988766553          78889999887  777664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=3.8e-13  Score=125.80  Aligned_cols=89  Identities=25%  Similarity=0.218  Sum_probs=77.4

Q ss_pred             eeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccC
Q 042537          626 VKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY  705 (789)
Q Consensus       626 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  705 (789)
                      |+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++
T Consensus        35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            48889999999888888899999999999999999976666678999999999999999977777799999999999999


Q ss_pred             CcccccCCC
Q 042537          706 NNLSGKIPL  714 (789)
Q Consensus       706 N~l~~~~p~  714 (789)
                      |++.+.++.
T Consensus       115 N~~~c~~~~  123 (174)
T 2r9u_A          115 NPWDCECRD  123 (174)
T ss_dssp             SCBCTTBGG
T ss_pred             CCccccccc
Confidence            999877653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=1.8e-12  Score=120.72  Aligned_cols=63  Identities=27%  Similarity=0.250  Sum_probs=49.6

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCc
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIP  689 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  689 (789)
                      +.|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|.++...+
T Consensus        57 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            667777777776666667888888889999998887666678888999999999998886543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=6.7e-14  Score=147.87  Aligned_cols=84  Identities=19%  Similarity=0.166  Sum_probs=46.8

Q ss_pred             eeEEEcccCccccc----cchhhhccccCcEEEccCCcceee----cCcccccCCCCCEEeCCCCcccccCchhhhcCCC
Q 042537          626 VKILDFSMNKLSGT----IPEEIMDLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSR  697 (789)
Q Consensus       626 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  697 (789)
                      |++|||++|.|++.    ++..+...++|++|+|++|.|++.    ++..+...++|++|||++|.|+......+..+..
T Consensus       185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~  264 (372)
T 3un9_A          185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGG  264 (372)
T ss_dssp             CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC-
T ss_pred             cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhc
Confidence            46666666666542    244555666777777777777643    2333445577777777777776555555544321


Q ss_pred             -----CCeEe--ccCCccc
Q 042537          698 -----LSVMN--LSYNNLS  709 (789)
Q Consensus       698 -----L~~L~--ls~N~l~  709 (789)
                           |+.+.  +..|.++
T Consensus       265 ~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          265 AAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             -----CEEECCCC----CH
T ss_pred             CCCccchhhHhhhcCCccC
Confidence                 45555  4555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.32  E-value=9.8e-11  Score=125.55  Aligned_cols=86  Identities=12%  Similarity=0.079  Sum_probs=35.4

Q ss_pred             hhhhCCCCCCEEEccCCC---CCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhcc
Q 042537          255 QWLSRMYKLDALSLSGNS---LTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQ  331 (789)
Q Consensus       255 ~~l~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  331 (789)
                      .+|.++++|+.+.+..|.   ++ .+....|..+.+|+.+.+..+ ++......|..+.+|+.+.+... +.......|.
T Consensus        81 ~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~  157 (394)
T 4gt6_A           81 NAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFS  157 (394)
T ss_dssp             TTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             HHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeeccccee
Confidence            344444444444444332   22 333334444444444444332 22223333333334444433221 1112233455


Q ss_pred             CCCCccEEEccC
Q 042537          332 TQNQIEVLDISD  343 (789)
Q Consensus       332 ~l~~L~~L~ls~  343 (789)
                      .+..|+.+.+..
T Consensus       158 ~c~~L~~i~~~~  169 (394)
T 4gt6_A          158 YCYSLHTVTLPD  169 (394)
T ss_dssp             TCTTCCEEECCT
T ss_pred             cccccccccccc
Confidence            566666666544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=7.1e-12  Score=117.11  Aligned_cols=104  Identities=22%  Similarity=0.233  Sum_probs=59.8

Q ss_pred             cEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCC
Q 042537          457 AVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKS  536 (789)
Q Consensus       457 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~  536 (789)
                      +.+++++|.++ .+|..+.  ++|++|++++|++++..|..|.++++|++|++++|+++ .+|...+..+++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence            34455555554 3333332  45555666666655555555666666666666666665 45554444566666666666


Q ss_pred             CcccccCCCCccCCCcCceEeccCCccc
Q 042537          537 NKFHGNIPFQVCQLSYIQILDLSLNNIS  564 (789)
Q Consensus       537 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  564 (789)
                      |++++..+..+..+++|++|++++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            6666544445666666777777777665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.27  E-value=6e-10  Score=119.38  Aligned_cols=266  Identities=9%  Similarity=0.099  Sum_probs=130.7

Q ss_pred             cchhhhhCCC-CCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCc---ccccccCCCCCcccceeEeccCccCCCCCc
Q 042537          252 TINQWLSRMY-KLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNS---FTLKFSHDWIPPFQLIIILLGSCQMGPHFP  327 (789)
Q Consensus       252 ~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  327 (789)
                      ....+|.++. .|+.+.+..+ ++ .|...+|.++++|+.+.+..|.   ++......|..+.+|+.+.+..+ +.....
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~  130 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS  130 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred             cCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence            3345677764 5888888764 55 6777889999999999998764   55455556666666655544332 222223


Q ss_pred             hhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCC
Q 042537          328 KWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNA  407 (789)
Q Consensus       328 ~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L  407 (789)
                      ..|..+.+|+.+.+..+ +.                          .++...+..+..|+.+.+..+ ++.         
T Consensus       131 ~aF~~c~~L~~i~lp~~-~~--------------------------~I~~~~F~~c~~L~~i~~~~~-~~~---------  173 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEG-VT--------------------------SVADGMFSYCYSLHTVTLPDS-VTA---------  173 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CC--------------------------EECTTTTTTCTTCCEEECCTT-CCE---------
T ss_pred             hhhhhhcccccccccce-ee--------------------------eecccceecccccccccccce-eeE---------
Confidence            34455555555554322 11                          122223444444444444322 000         


Q ss_pred             cEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccc-------------
Q 042537          408 SVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSM-------------  474 (789)
Q Consensus       408 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------  474 (789)
                                   +...++.+ ..|+.+.+..+... ....+|.++.+++......+.........+             
T Consensus       174 -------------I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (394)
T 4gt6_A          174 -------------IEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY  238 (394)
T ss_dssp             -------------ECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC
T ss_pred             -------------eccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeeccccccccccccc
Confidence                         11111111 44555555443322 444556666666666555443331111111             


Q ss_pred             cccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCc
Q 042537          475 GFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQ  554 (789)
Q Consensus       475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  554 (789)
                      .....+..+.+.. .+..+-..+|.+|..|+.+.+.++..  .+....|.++++|+.+.+. +.++.+...+|.++.+|+
T Consensus       239 ~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~  314 (394)
T 4gt6_A          239 PSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLK  314 (394)
T ss_dssp             CTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCC
T ss_pred             ccccccceEEcCC-cceEcccceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcC
Confidence            1112233333332 23334455666666666666654432  3444444456666666664 334434444555566666


Q ss_pred             eEeccCCcccccCCccccccccC
Q 042537          555 ILDLSLNNISGIIPKCLNNFTGM  577 (789)
Q Consensus       555 ~L~Ls~N~l~~~~p~~~~~l~~L  577 (789)
                      .+++..+ ++.+...+|.++.+|
T Consensus       315 ~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          315 SIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTC
T ss_pred             EEEeCCc-ccEehHhHhhCCCCC
Confidence            6655432 333333344443333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=9.5e-13  Score=139.01  Aligned_cols=87  Identities=20%  Similarity=0.302  Sum_probs=69.3

Q ss_pred             CceeEEEcccCcccc----ccchhhhccccCcEEEccCCcceee----cCcccccCCCCCEEeCCCCccccc----Cchh
Q 042537          624 GLVKILDFSMNKLSG----TIPEEIMDLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDLSQNQFVGG----IPSS  691 (789)
Q Consensus       624 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~  691 (789)
                      +.|+.|+|++|.+++    .++..+...++|++|+|++|.|++.    ++..+...++|+.|+|++|.|+..    ++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            345888888888865    2455567789999999999999853    355677888999999999999864    3455


Q ss_pred             hhcCCCCCeEeccCCcccc
Q 042537          692 LCQLSRLSVMNLSYNNLSG  710 (789)
Q Consensus       692 l~~l~~L~~L~ls~N~l~~  710 (789)
                      +...++|++||+++|++..
T Consensus       235 L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCH
T ss_pred             HHhCCCCCEEeccCCCCCH
Confidence            6677999999999999864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=1.1e-11  Score=130.56  Aligned_cols=86  Identities=21%  Similarity=0.091  Sum_probs=52.3

Q ss_pred             eEEEccc-CccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccC
Q 042537          627 KILDFSM-NKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY  705 (789)
Q Consensus       627 ~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  705 (789)
                      +.|+|++ |+|++..+..|.++++|+.|+|++|+|++.+|..|.++++|+.|||++|+|++..+..|..++ |+.|++++
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence            5566664 666655555666666666666666666666666666666666666666666655555555444 66666666


Q ss_pred             CcccccCC
Q 042537          706 NNLSGKIP  713 (789)
Q Consensus       706 N~l~~~~p  713 (789)
                      |++.+.++
T Consensus       113 N~~~c~c~  120 (347)
T 2ifg_A          113 NPLHCSCA  120 (347)
T ss_dssp             SCCCCCGG
T ss_pred             CCccCCCc
Confidence            66655443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=1.4e-11  Score=129.93  Aligned_cols=108  Identities=22%  Similarity=0.232  Sum_probs=94.1

Q ss_pred             eEEEcccC-ccccccchhhhccccCcEEEccC-CcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEecc
Q 042537          627 KILDFSMN-KLSGTIPEEIMDLVGLVALNLSR-NNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLS  704 (789)
Q Consensus       627 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  704 (789)
                      ..++++++ +++ .+|. +..+++|++|+|++ |+|++..+..|..+++|+.|+|++|+|++..|..|..+++|++|||+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            46799998 898 5888 99999999999996 99998888899999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCccccccccccCCCCCCCCCC
Q 042537          705 YNNLSGKIPLGTQLQSFNASVYAGNPELCGLP  736 (789)
Q Consensus       705 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  736 (789)
                      +|+|++..|.......+....+.+|++.|+|+
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            99999655543222236677789999999886

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.00  E-value=3.9e-08  Score=104.70  Aligned_cols=140  Identities=10%  Similarity=0.141  Sum_probs=99.5

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      ..++.+.+..+ +......+|.++..|+.+.+..+ ++.+...+|..+.+|+.+.+..+ +..+....|.+|.+|+.+.+
T Consensus       217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l  293 (379)
T 4h09_A          217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM  293 (379)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred             cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence            66777777554 33355667777888888888765 55566677777888888887654 55566677888888888888


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFT  575 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  575 (789)
                      .++.++ .++...|.++.+|+.+.+..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++.
T Consensus       294 ~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          294 DNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            877777 777777777888888888654 55566667888888888877654 5555566676654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.97  E-value=7.6e-08  Score=102.44  Aligned_cols=309  Identities=10%  Similarity=0.027  Sum_probs=177.4

Q ss_pred             CCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhh
Q 042537          204 KLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFS  283 (789)
Q Consensus       204 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  283 (789)
                      +|+.+.+.. .++.+...+|.++.+|+.+.+..           .++.....+|.++ +|+.+.+..+ +. .+....|.
T Consensus        47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-----------~v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~  111 (379)
T 4h09_A           47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-----------TVTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQ  111 (379)
T ss_dssp             GCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-----------TCCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTT
T ss_pred             CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-----------cceEechhhhcCC-CCceEECCce-ee-Eeccceec
Confidence            566666653 35556667777777777777752           2333334456665 5666666543 33 45555565


Q ss_pred             cCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCe
Q 042537          284 ELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIAD  363 (789)
Q Consensus       284 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~  363 (789)
                      .. +|+.+.+..+ +.......|... .++.+.+..+ +.......+..+..++.+.+..+.........+..  .....
T Consensus       112 ~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~  185 (379)
T 4h09_A          112 GT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY--NKNKT  185 (379)
T ss_dssp             TC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE--ETTSS
T ss_pred             cC-CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceec--ccccc
Confidence            54 6777777654 222223333322 3333333322 22223344566666766666554332111110000  00000


Q ss_pred             eeeccccccccCCCCCCCCCCCCCEEEccCCcccc--cCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCc
Q 042537          364 FNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEG--LIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNI  441 (789)
Q Consensus       364 L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~  441 (789)
                      ..            ..+.....+..+.+....-.-  .......+++.+.+..+ +.. +....+..+..|+.+.+..+ 
T Consensus       186 ~~------------~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~-i~~~~f~~~~~L~~i~lp~~-  250 (379)
T 4h09_A          186 IL------------ESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTT-LGDGAFYGMKALDEIAIPKN-  250 (379)
T ss_dssp             EE------------EECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCE-ECTTTTTTCSSCCEEEECTT-
T ss_pred             ee------------ccccccccccccccccceeEEeecccccccccceeeeccc-eeE-EccccccCCccceEEEcCCC-
Confidence            00            011122223333222211110  01111344555555433 111 22222333378999999776 


Q ss_pred             cccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchh
Q 042537          442 LSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTW  521 (789)
Q Consensus       442 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~  521 (789)
                      ++..-..+|.++.+|+.+.+..+ +......+|.++++|+.+.+.++.++.+...+|.+|.+|+.+++..+ ++ .+...
T Consensus       251 v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~  327 (379)
T 4h09_A          251 VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVY  327 (379)
T ss_dssp             CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTT
T ss_pred             ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHH
Confidence            66566778999999999999754 66567778999999999999999888888889999999999999765 66 78888


Q ss_pred             hhhcCCCCcEEEcCCCcccccCCCCccCCCc
Q 042537          522 IGEGLPKLVVLSLKSNKFHGNIPFQVCQLSY  552 (789)
Q Consensus       522 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  552 (789)
                      .|.++.+|+.+.+..+ ++.+...+|.++..
T Consensus       328 aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          328 AFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             TTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             HhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            8888999999998765 66566667776643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=1.3e-09  Score=113.84  Aligned_cols=83  Identities=19%  Similarity=0.287  Sum_probs=51.2

Q ss_pred             cCceeEEEcccCccccccchhhh---ccccCcEEEccCCcceee----cCcccccCCCCCEEeCCCCcccccCchhhhc-
Q 042537          623 LGLVKILDFSMNKLSGTIPEEIM---DLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQ-  694 (789)
Q Consensus       623 l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-  694 (789)
                      ++.|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            45567777777777654443333   467778888887777653    2333455677888888877776544444443 


Q ss_pred             CCCCCeEeccCCc
Q 042537          695 LSRLSVMNLSYNN  707 (789)
Q Consensus       695 l~~L~~L~ls~N~  707 (789)
                      +  ...+++++++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3456666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=1.2e-08  Score=106.48  Aligned_cols=211  Identities=17%  Similarity=0.150  Sum_probs=115.5

Q ss_pred             CCcEEEEEcCCCCCC-CC---cccccCccccCCCCCCEEeCCCCCCCC--------CCCcccccCCCCCCEEecCCCcCC
Q 042537           46 TGHVIVLDLQVLVHS-EP---LKGTISPSLLKLYHLRHLDLSENDFSG--------SRIPEFIGSLNKLRYLSLSSAEFE  113 (789)
Q Consensus        46 ~~~v~~l~L~~~~~~-~~---l~~~l~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~~l~~L~~L~Ls~n~i~  113 (789)
                      ..+|+.|.+..+..+ ..   ....+.+++.++++|+.|.+.......        ..+...+..+++|+.|+|++|.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            356888887753211 00   011234557788999999987654321        024455677899999999887412


Q ss_pred             CCCCccccCCCCCcEEeccCccCCCCcchHHhh--CCCCCCCEEEcCCC--CCCCCccccccccccCCCCCCeEEccCCC
Q 042537          114 GPIPSQLGNLSRLKYLDLSYINLNKSRDWLRII--DKLPSLRTLNLEHC--HLPPIIPSDLLHLNFSTSSLGALYLFENS  189 (789)
Q Consensus       114 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l--~~l~~L~~L~L~~n--~l~~~~~~~~~~~~l~~~~L~~L~l~~n~  189 (789)
                       .++. +. +++|++|++..+.+...  ....+  ..+|+|++|+|+.+  ...+...  .       ..+.        
T Consensus       186 -~l~~-~~-~~~L~~L~L~~~~l~~~--~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~--~-------~~l~--------  243 (362)
T 2ra8_A          186 -SIGK-KP-RPNLKSLEIISGGLPDS--VVEDILGSDLPNLEKLVLYVGVEDYGFDGD--M-------NVFR--------  243 (362)
T ss_dssp             -BCCS-CB-CTTCSEEEEECSBCCHH--HHHHHHHSBCTTCCEEEEECBCGGGTCCSC--G-------GGTG--------
T ss_pred             -eecc-cc-CCCCcEEEEecCCCChH--HHHHHHHccCCCCcEEEEeccccccccchh--H-------HHHH--------
Confidence             2333 43 88999999998887642  22333  37899999988642  1111100  0       0000        


Q ss_pred             CCCCchhHHH-hhcCCCcEEEccCCCCcccCchhhh---cCCCCcEEECCCCCccEEecCCCcCcccc----hhhhhCCC
Q 042537          190 LSSSIYPWLF-NISSKLVVLDLDSNLLQGSLLEPFD---RMVSLRTLYLGFNELEELFLGKNRLNGTI----NQWLSRMY  261 (789)
Q Consensus       190 l~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~---~l~~L~~L~L~~n~L~~L~L~~n~l~~~~----~~~l~~l~  261 (789)
                            ..+. ...++|++|++.+|.+....+..+.   .+++|++|+|+          .|.+.+..    +..+.+++
T Consensus       244 ------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs----------~n~L~d~G~~~L~~~L~~l~  307 (362)
T 2ra8_A          244 ------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS----------AGVLTDEGARLLLDHVDKIK  307 (362)
T ss_dssp             ------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC----------SSCCBHHHHHHHHTTHHHHT
T ss_pred             ------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC----------CCCCChHHHHHHHhhcccCC
Confidence                  0000 1123566666666665543333333   24556666665          44444432    22334567


Q ss_pred             CCCEEEccCCCCCCccChhhhhc-CCCCcEEEccCCc
Q 042537          262 KLDALSLSGNSLTGVVTESVFSE-LSNLKALHLDDNS  297 (789)
Q Consensus       262 ~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~  297 (789)
                      +|+.|++++|.++... ...+.. +  ...++++.++
T Consensus       308 ~L~~L~L~~n~i~d~~-~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          308 HLKFINMKYNYLSDEM-KKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             TCSEEECCSBBCCHHH-HHHHHHHC--CSEEECCSBC
T ss_pred             cceEEECCCCcCCHHH-HHHHHHHc--CCEEEecCCc
Confidence            8888888888776322 122332 2  3567777766

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=1.2e-07  Score=89.04  Aligned_cols=84  Identities=17%  Similarity=0.190  Sum_probs=49.8

Q ss_pred             eeEEEcccCccccc----cchhhhccccCcEEEccCCcceee----cCcccccCCCCCEEeC--CCCccccc----Cchh
Q 042537          626 VKILDFSMNKLSGT----IPEEIMDLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDL--SQNQFVGG----IPSS  691 (789)
Q Consensus       626 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p~~  691 (789)
                      |++|+|++|++...    +...+...+.|++|+|++|.|+..    +...+...++|++|+|  ++|.+...    +...
T Consensus        67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~  146 (185)
T 1io0_A           67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM  146 (185)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred             cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence            35555555555432    233344456677777777776643    3444556667777777  66777643    2344


Q ss_pred             hhcCCCCCeEeccCCccc
Q 042537          692 LCQLSRLSVMNLSYNNLS  709 (789)
Q Consensus       692 l~~l~~L~~L~ls~N~l~  709 (789)
                      +...+.|++|++++|.+.
T Consensus       147 L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          147 LEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCcCEEeccCCCCC
Confidence            555577777777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.37  E-value=4.1e-07  Score=89.73  Aligned_cols=65  Identities=26%  Similarity=0.389  Sum_probs=28.2

Q ss_pred             cccCcEEEccCCccee--ecCcccccCCCCCEEeCCCCcccccCchhhhcCC--CCCeEeccCCcccccCC
Q 042537          647 LVGLVALNLSRNNLTG--QITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLS--RLSVMNLSYNNLSGKIP  713 (789)
Q Consensus       647 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~~~~p  713 (789)
                      +++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  .|++|++++|++++.+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            4444444444444443  2233334444444444444444433  1222222  44455555555444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=2.9e-07  Score=90.83  Aligned_cols=81  Identities=22%  Similarity=0.271  Sum_probs=67.4

Q ss_pred             cccCceeEEEcccCcccc--ccchhhhccccCcEEEccCCcceeecCcccccCC--CCCEEeCCCCcccccCc-------
Q 042537          621 STLGLVKILDFSMNKLSG--TIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLK--SLDFLDLSQNQFVGGIP-------  689 (789)
Q Consensus       621 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p-------  689 (789)
                      ..++.|+.|+||+|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457899999999999997  4567888999999999999999864  3455555  99999999999997665       


Q ss_pred             hhhhcCCCCCeEec
Q 042537          690 SSLCQLSRLSVMNL  703 (789)
Q Consensus       690 ~~l~~l~~L~~L~l  703 (789)
                      ..+..+++|+.||=
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            34778999998863

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.21  E-value=1.1e-06  Score=82.60  Aligned_cols=18  Identities=6%  Similarity=-0.046  Sum_probs=9.3

Q ss_pred             hhcCCCCcEEEccCCccc
Q 042537          282 FSELSNLKALHLDDNSFT  299 (789)
Q Consensus       282 ~~~l~~L~~L~L~~n~i~  299 (789)
                      +...++|++|++++|.+.
T Consensus       147 L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          147 LEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCcCEEeccCCCCC
Confidence            344455555555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=4.6e-06  Score=75.95  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=68.7

Q ss_pred             ceeEEEcccCccccccchhhhccccCcEEEccCCc-ceeecCcccccC----CCCCEEeCCCCc-ccccCchhhhcCCCC
Q 042537          625 LVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNN-LTGQITPKIDQL----KSLDFLDLSQNQ-FVGGIPSSLCQLSRL  698 (789)
Q Consensus       625 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L  698 (789)
                      .|+.||++++.++..--..+..+++|+.|+|++|. +++.--..+..+    ++|++|+|++|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            58999999999987666678899999999999995 776544556654    479999999985 876555678899999


Q ss_pred             CeEeccCCc
Q 042537          699 SVMNLSYNN  707 (789)
Q Consensus       699 ~~L~ls~N~  707 (789)
                      ++|++++++
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999986

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.58  E-value=3.3e-05  Score=70.31  Aligned_cols=60  Identities=13%  Similarity=0.222  Sum_probs=38.3

Q ss_pred             CceeEEEcccCc-cccccchhhhcc----ccCcEEEccCCc-ceeecCcccccCCCCCEEeCCCCc
Q 042537          624 GLVKILDFSMNK-LSGTIPEEIMDL----VGLVALNLSRNN-LTGQITPKIDQLKSLDFLDLSQNQ  683 (789)
Q Consensus       624 ~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~  683 (789)
                      +.|+.|+|++|. +++.--..+..+    ++|++|+|++|. +|..--..+..+++|++|+|+++.
T Consensus        85 ~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A           85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            334667777663 554333344443    367888888874 765544556777888888888875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.29  E-value=0.00034  Score=60.75  Aligned_cols=60  Identities=20%  Similarity=0.178  Sum_probs=37.8

Q ss_pred             EEEccCCcce-eecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCC
Q 042537          652 ALNLSRNNLT-GQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIP  713 (789)
Q Consensus       652 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  713 (789)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|++|+|++|++.+..-
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            4556666654 23443322  357777777777776666667777777777777777765443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.15  E-value=0.00022  Score=66.17  Aligned_cols=83  Identities=14%  Similarity=0.168  Sum_probs=49.6

Q ss_pred             eeEEEcccCccccc----cchhhhccccCcEEEccCCcceee----cCcccccCCCCCEEeCCCCc---ccc----cCch
Q 042537          626 VKILDFSMNKLSGT----IPEEIMDLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDLSQNQ---FVG----GIPS  690 (789)
Q Consensus       626 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~---l~~----~~p~  690 (789)
                      |+.|+|++|+|.+.    +.+.+..-+.|++|+|++|.|+..    +-+.+..-+.|++|+|++|.   +..    .+.+
T Consensus        72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~  151 (197)
T 1pgv_A           72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM  151 (197)
T ss_dssp             CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH
T ss_pred             cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH
Confidence            45666666666532    334444556777777777777643    22334555678888887653   332    2334


Q ss_pred             hhhcCCCCCeEeccCCcc
Q 042537          691 SLCQLSRLSVMNLSYNNL  708 (789)
Q Consensus       691 ~l~~l~~L~~L~ls~N~l  708 (789)
                      .+..-+.|+.|+++.|..
T Consensus       152 aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          152 AIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHCSSCCEEECCCCCH
T ss_pred             HHHhCCCcCeEeccCCCc
Confidence            566667788888877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.98  E-value=0.00057  Score=63.45  Aligned_cols=20  Identities=15%  Similarity=-0.032  Sum_probs=12.2

Q ss_pred             hhhhhCCCCCCEEEccCCCC
Q 042537          254 NQWLSRMYKLDALSLSGNSL  273 (789)
Q Consensus       254 ~~~l~~l~~L~~L~L~~n~l  273 (789)
                      ...+..-+.|+.|+++.|.+
T Consensus       150 a~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCcCeEeccCCCc
Confidence            34455566677777766654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.61  E-value=0.0038  Score=54.02  Aligned_cols=57  Identities=16%  Similarity=0.173  Sum_probs=36.0

Q ss_pred             EEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCC
Q 042537           79 HLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLN  137 (789)
Q Consensus        79 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~  137 (789)
                      +++.++++++...+|..+.  ++|++|+|++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666665112454332  45777777777777666666777777777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	789
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.0 bits (206), Expect = 3e-18
 Identities = 59/265 (22%), Positives = 96/265 (36%), Gaps = 4/265 (1%)

Query: 475 GFLHSIQTLSLYNNSLIG--ELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVL 532
              + +  L L   +L     +PS   +   L  + +G               L +L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 533 SLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYT 592
            +      G IP  + Q+  +  LD S N +SG +P  +++   +   +     I+    
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 593 FERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVA 652
                   L + +       + +     +   L          +       +        
Sbjct: 167 DSYGSFSKLFTSMTIS--RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 653 LNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKI 712
                 N       K+   K+L+ LDL  N+  G +P  L QL  L  +N+S+NNL G+I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 713 PLGTQLQSFNASVYAGNPELCGLPL 737
           P G  LQ F+ S YA N  LCG PL
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.1 bits (201), Expect = 2e-17
 Identities = 60/274 (21%), Positives = 100/274 (36%), Gaps = 9/274 (3%)

Query: 425 CSING--HKLEFLDLSNNILSGR--LPDCWMQFDRLAVLSLANN-FFSGKIPKSMGFLHS 479
           C  +   +++  LDLS   L     +P        L  L +       G IP ++  L  
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 480 IQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKF 539
           +  L + + ++ G +P F      L+ +D   N LSG +P  I   LP LV ++   N+ 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRI 161

Query: 540 HGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIE 599
            G IP      S +        N              +A    S   +  + +      +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 600 FLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNN 659
             +                  S       L    N++ GT+P+ +  L  L +LN+S NN
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDL--RNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 660 LTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLC 693
           L G+I P+   L+  D    + N+ + G P   C
Sbjct: 280 LCGEI-PQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.3 bits (191), Expect = 3e-16
 Identities = 69/307 (22%), Positives = 115/307 (37%), Gaps = 18/307 (5%)

Query: 2   EEEREALLEFKQSLVDEYGILSSWGREDDKRDCCY--WRGVRCSNTTGHVIVLDLQVLVH 59
            ++++ALL+ K+ L +    LSSW       DCC   W GV C   T    V +L +   
Sbjct: 5   PQDKQALLQIKKDLGNP-TTLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 60  SEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQ 119
           + P    I  SL  L +L  L +   +     IP  I  L +L YL ++     G IP  
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 120 LGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLH------- 172
           L  +  L  LD SY     S      I  LP+L  +  +   +   IP            
Sbjct: 121 LSQIKTLVTLDFSYN--ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 173 LNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTL 232
           +  S + L        +  +  +  L     +     L  +      +      ++    
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 233 YLGFNELEELF-LGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKAL 291
            +G ++      L  NR+ GT+ Q L+++  L +L++S N+L G + +     L      
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVS 296

Query: 292 HLDDNSF 298
              +N  
Sbjct: 297 AYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 52/261 (19%), Positives = 91/261 (34%), Gaps = 3/261 (1%)

Query: 258 SRMYKLDALSLSGNSLTGVVT-ESVFSELSNLKALHLDDN-SFTLKFSHDWIPPFQLIII 315
           ++ Y+++ L LSG +L       S  + L  L  L++    +             QL  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 316 LLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKL 375
            +    +    P +L     +  LD S   +S T+P     L + +       N I G +
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG-ITFDGNRISGAI 165

Query: 376 PNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFL 435
           P+    F    +S+ IS N   G IPP  +N ++  +  ++              K    
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 436 DLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELP 495
                               L  L L NN   G +P+ +  L  + +L++  N+L GE+P
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 496 SFFKSCSQLILMDLGKNGLSG 516
                    +        L G
Sbjct: 286 QGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 44/303 (14%), Positives = 89/303 (29%), Gaps = 36/303 (11%)

Query: 200 NISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSR 259
             + ++  LDL    L                                     I   L+ 
Sbjct: 47  TQTYRVNNLDLSGLNLPKPY--------------------------------PIPSSLAN 74

Query: 260 MYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGS 319
           +  L+ L + G +          ++L+ L  L++   + +            L+ +    
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

Query: 320 CQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLS 379
             +    P  + +   +  +      IS  +PD +   S       +S N + GK+P   
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 380 LRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSN 439
              +     +  +    +  +       +                  ++ +     DL N
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL-DLRN 253

Query: 440 NILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFK 499
           N + G LP    Q   L  L+++ N   G+IP   G L      +  NN  +   P    
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP--LP 310

Query: 500 SCS 502
           +C+
Sbjct: 311 ACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 9e-05
 Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 25  WGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSE 84
              ++ ++       +        +      + + +  + GT+   L +L  L  L++S 
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 85  NDFSGSRIPEFIGSLNKLRYLSLSSAEF--EGPIPS 118
           N+  G  IP+  G+L +    + ++ +     P+P+
Sbjct: 278 NNLCGE-IPQG-GNLQRFDVSAYANNKCLCGSPLPA 311

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.0 bits (183), Expect = 7e-15
 Identities = 66/388 (17%), Positives = 119/388 (30%), Gaps = 51/388 (13%)

Query: 339 LDISDAGISDTVPDWFWDLSHTIADFNLSNNHIK-----GKLPNLSLRFDPFSSSIDISS 393
             +    ++DTV     DL   +         IK       L NL+         I+ S+
Sbjct: 27  TVLGKTNVTDTVS--QTDLD-QVTTLQADRLGIKSIDGVEYLNNLT--------QINFSN 75

Query: 394 NYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQF 453
           N    + P    N + L       ++        N   L  L L NN ++   P   +  
Sbjct: 76  NQLTDITPL--KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 454 DRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFK-------------- 499
                LS         +              + +   +  L +  +              
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 500 -SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDL 558
              + L  +    N +S   P  I      L  LSL  N+        +  L+ +  LDL
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 559 SLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHE 618
           + N IS + P              + L + +N       +  L +  +  +   +     
Sbjct: 249 ANNQISNLAPLSGLT-------KLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301

Query: 619 YRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLD 678
             S L  +  L    N +S   P  +  L  L  L  + N ++      +  L ++++L 
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357

Query: 679 LSQNQFVGGIPSSLCQLSRLSVMNLSYN 706
              NQ     P  L  L+R++ + L+  
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.7 bits (164), Expect = 1e-12
 Identities = 63/377 (16%), Positives = 126/377 (33%), Gaps = 30/377 (7%)

Query: 66  TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSR 125
           T + S   L  +  L             + +  LN L  ++ S+ +     P  L NL++
Sbjct: 35  TDTVSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITP--LKNLTK 89

Query: 126 LKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYL 185
           L  + ++   +        + +        N      P    ++L  L  S++++  +  
Sbjct: 90  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 149

Query: 186 FENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLG 245
                S     +   ++    +    +NL     L+     VS  ++      LE L   
Sbjct: 150 LSGLTSLQQLSFGNQVTDLKPL----ANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 205

Query: 246 KNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHD 305
            N+++      +  +  LD LSL+GN L  +      + L+NL  L L +N  +      
Sbjct: 206 NNQISDITPLGI--LTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQIS--NLAP 258

Query: 306 WIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFN 365
                +L  + LG+ Q+    P    T          +   +             +    
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNL-----ELNENQLEDISPISNLKNLTYLT 313

Query: 366 LSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLP--SNASVLNLSRNKFSESISF 423
           L  N+I    P  SL        +  ++N     +  L   +N + L+   N+ S+    
Sbjct: 314 LYFNNISDISPVSSL---TKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTPL 369

Query: 424 LCSINGHKLEFLDLSNN 440
               N  ++  L L++ 
Sbjct: 370 ---ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 63  LKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGN 122
           L      ++  L  L  L   E + +       I +L  L YL+L         P  + +
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327

Query: 123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182
           L++L+ L  +   ++     +  +  L ++  L+  H  +  + P   L      + +  
Sbjct: 328 LTKLQRLFFANNKVSD----VSSLANLTNINWLSAGHNQISDLTPLANL------TRITQ 377

Query: 183 LYLFEN 188
           L L + 
Sbjct: 378 LGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 3e-12
 Identities = 42/280 (15%), Positives = 86/280 (30%), Gaps = 15/280 (5%)

Query: 432 LEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLI 491
              LDL NN ++      +     L  L L NN  S   P +   L  ++ L L  N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 492 GELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLS 551
                  K+  +L + +     +   +   +      +V L     K  G        + 
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 552 YIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLT 611
            +  + ++  NI+ I      + T +     + +      + +            N +  
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTEL-HLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 612 WKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTG------QIT 665
                      L  + + +  + K    +P  + D   +  + L  NN++          
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVK----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 666 PKIDQLKSLDFLDLSQN--QFVGGIPSSLCQLSRLSVMNL 703
               +  S   + L  N  Q+    PS+   +   + + L
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.5 bits (140), Expect = 8e-10
 Identities = 40/257 (15%), Positives = 73/257 (28%), Gaps = 5/257 (1%)

Query: 286 SNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAG 345
            +   L L +N  T     D+     L  ++L + ++    P       ++E L +S   
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 346 ISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPS 405
           + +        L       N      K     L+        +  + S+  E        
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 406 NASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF 465
             S + ++    +     L       L  L L  N ++          + LA L L+ N 
Sbjct: 151 KLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEG 525
            S     S+     ++ L L NN L+            + ++ L  N +S          
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY-IQVVYLHNNNISAIGSNDFCPP 265

Query: 526 LPKLVVLSLKSNKFHGN 542
                  S        N
Sbjct: 266 GYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 37/256 (14%), Positives = 75/256 (29%), Gaps = 32/256 (12%)

Query: 76  HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYIN 135
               LDL  N  +         +L  L  L L + +     P     L +L+ L LS   
Sbjct: 32  DTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 136 LNKSRDWLRIIDK--------LPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALY--- 184
           L +  + +    +        +  +R       +   ++      L  S    GA     
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 185 -LFENSLSS-SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEEL 242
            L    ++  +I      +   L  L LD N +          + +L  L L FN +  +
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 243 FLGKNRLNGTINQWL-------------SRMYKLDALSLSGNSLTGV-----VTESVFSE 284
             G       + +               +    +  + L  N+++ +           ++
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 270

Query: 285 LSNLKALHLDDNSFTL 300
            ++   + L  N    
Sbjct: 271 KASYSGVSLFSNPVQY 286

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 6e-08
 Identities = 43/218 (19%), Positives = 75/218 (34%), Gaps = 6/218 (2%)

Query: 520 TWIGEGLPK-LVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMA 578
             + + LP    +L L++NK           L  +  L L  N IS I P        + 
Sbjct: 23  EKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 579 QKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSG 638
           +   S   +        + ++ L   V    +T             +V  L  +  K SG
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQEL--RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 639 TIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRL 698
                   +  L  + ++  N+T   T       SL  L L  N+      +SL  L+ L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 699 SVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP 736
           + + LS+N++S               ++  N +L  +P
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 34/212 (16%), Positives = 74/212 (34%), Gaps = 8/212 (3%)

Query: 25  WGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSE 84
              ++ +        VR S   G   ++ +++  +     G  + +   +  L ++ +++
Sbjct: 100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 159

Query: 85  NDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLR 144
            + +   IP+  G    L  L L   +      + L  L+ L  L LS+ +++       
Sbjct: 160 TNIT--TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--VDNG 213

Query: 145 IIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSK 204
            +   P LR L+L +  L  +      H       L    +     +    P      + 
Sbjct: 214 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273

Query: 205 LVVLDLDSNLLQGSLLEP--FDRMVSLRTLYL 234
              + L SN +Q   ++P  F  +     + L
Sbjct: 274 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (152), Expect = 4e-11
 Identities = 58/476 (12%), Positives = 122/476 (25%), Gaps = 31/476 (6%)

Query: 126 LKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYL 185
           ++ LD+    L+ +R W  ++  L   + + L+ C L      D+        +L  L L
Sbjct: 4   IQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 186 FENSLS----SSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEE 241
             N L       +   L   S K+  L L +  L G+        +         +  + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 242 LFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLK 301
           L                +                     +     +  +     +    K
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRL--------------EKLQLEYCSLSAASCEPLASVLRAK 168

Query: 302 FSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTI 361
                +      I   G   +             +++        +            ++
Sbjct: 169 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 228

Query: 362 ADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESI 421
            +  L +N +               SS   +   +E  I           L   +  + +
Sbjct: 229 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 288

Query: 422 SFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQ 481
           S   +  G +   L     +  G   +           +  ++F S            I 
Sbjct: 289 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 348

Query: 482 TLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGL---PKLVVLSLKSNK 538
              L +  +        +  S L ++ L    +S    + +   L     L  L L +N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 539 FHGNIPFQVCQ-----LSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589
                  Q+ +        ++ L L     S  +   L       +K   +L + S
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA----LEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (141), Expect = 1e-09
 Identities = 60/479 (12%), Positives = 119/479 (24%), Gaps = 44/479 (9%)

Query: 77  LRHLDLSENDFSGSRIPEFIGSLNKLRYLSLS----SAEFEGPIPSQLGNLSRLKYLDLS 132
           ++ LD+   + S +R  E +  L + + + L     +      I S L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 133 YINLNKSRDWLRIIDKL----PSLRTLNLEHCHLPPIIPSD------LLHLNFSTSSLGA 182
              L        ++  L      ++ L+L++C L              L           
Sbjct: 64  SNELG-DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEEL 242
           L                    + + L+  S                     L  +  +  
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 243 FLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKF 302
             G   L   +     ++  L   S    S        + +  ++L+ L L  N      
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 303 SHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIA 362
             +  P        L +  +           +   VL   ++    ++            
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 363 DFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESIS 422
                                  ++     S+                N   +     + 
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL-LELQISNNRLEDAGVRELC 361

Query: 423 FLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQT 482
                 G  L  L L++  +S                          +  ++   HS++ 
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSC--------------------SSLAATLLANHSLRE 401

Query: 483 LSLYNNSLIGE-----LPSFFKSCSQLILMDLGKNGLSGEIPTWIG---EGLPKLVVLS 533
           L L NN L        + S  +    L  + L     S E+   +    +  P L V+S
Sbjct: 402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 56/473 (11%), Positives = 123/473 (26%), Gaps = 41/473 (8%)

Query: 238 ELEELFLGKNRLNGT-INQWLSRMYKLDALSLSGNSLTGVVTE---SVFSELSNLKALHL 293
           +++ L +    L+     + L  + +   + L    LT    +   S       L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 294 DDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQN-QIEVLDISDAGISDTVPD 352
             N                               + LQT + +I+ L + +  ++     
Sbjct: 63  RSNELG--------------------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

Query: 353 WFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNL 412
                  T+      +                    +       E L     S ++    
Sbjct: 103 VLSSTLRTLPTLQELHLSDNLLGDA---GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 159

Query: 413 SRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPK 472
                  +      +     +  +    +L   L D   Q + L + S      + +   
Sbjct: 160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 219

Query: 473 SMGFLHSIQTLSLYN-NSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVV 531
            +    +         N L     +            L    +     T  G G    V+
Sbjct: 220 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 279

Query: 532 LSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNY 591
            + +S K       ++       + +  L     +    + + +  A   S   ++ +  
Sbjct: 280 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 339

Query: 592 TFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGT----IPEEIMDL 647
            F  +         D  V        +  S L   ++L  +   +S +    +   ++  
Sbjct: 340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVL---RVLWLADCDVSDSSCSSLAATLLAN 396

Query: 648 VGLVALNLSRNNLTGQITPKI-----DQLKSLDFLDLSQNQFVGGIPSSLCQL 695
             L  L+LS N L      ++          L+ L L    +   +   L  L
Sbjct: 397 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 626 VKILDFSMNKLSGTIPEEIMD-LVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDLS 680
           ++ LD    +LS     E++  L     + L    LT      I+  +    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 681 QNQFVGGIPSSLCQLSRLSVMNLSYNNLSG 710
            N+        + Q  +     +   +L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 76  HLRHLDLSENDFSG---SRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLG-----NLSRLK 127
            LR L L++ D S    S +   + + + LR L LS+         QL          L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 128 YLDLSYINLN-KSRDWLR-IIDKLPSLRTL 155
            L L  I  + +  D L+ +    PSLR +
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 650 LVALNLSRNNLTGQITPKI-DQLKSLDFLDLSQNQF----VGGIPSSLCQLSRLSVMNLS 704
           + +L++    L+     ++   L+    + L            I S+L     L+ +NL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 705 YNNLSGKIP--LGTQLQSFNASV 725
            N L       +   LQ+ +  +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 57/399 (14%), Positives = 93/399 (23%), Gaps = 18/399 (4%)

Query: 67  ISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSL----NKLRYLSLSSAEFEGPIPSQLGN 122
           IS +L     L  L+L  N+     +   +  L     K++ LSL +    G     L +
Sbjct: 47  ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 106

Query: 123 LSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGA 182
             R           +       +      L         L     S         +S+  
Sbjct: 107 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 166

Query: 183 LYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEEL 242
                  L+ S           L     DS     +L      + S     L      + 
Sbjct: 167 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 226

Query: 243 FLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKF 302
            L +  L       +        L    + L  +              L     +     
Sbjct: 227 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 286

Query: 303 SHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIA 362
                            C+              ++    + A  S        +      
Sbjct: 287 ELSLAGNELGDEGARLLCETLLEPGCQ-LESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 345

Query: 363 DFNLSNNHIKGKLPNLSLRFDPFS-------SSIDISSNYFEGLIPPLPSNAS--VLNLS 413
             + +     G          P S       +  D+S +    L   L +N S   L+LS
Sbjct: 346 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 405

Query: 414 RNKFS-ESISFLCSI---NGHKLEFLDLSNNILSGRLPD 448
            N      I  L       G  LE L L +   S  + D
Sbjct: 406 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 5e-11
 Identities = 40/305 (13%), Positives = 78/305 (25%), Gaps = 30/305 (9%)

Query: 382 FDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNI 441
           ++    +        + +   +P+ +  + L  N+ S   +       +       SN +
Sbjct: 9   YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL 68

Query: 442 LSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSC 501
                           +    N       P +   L  + TL L    L    P  F+  
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128

Query: 502 SQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLN 561
           + L  + L  N L           L  L  L L  N+           L  +  L L  N
Sbjct: 129 AALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 562 NISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRS 621
            ++ + P    +   +         +++  T     +  L+                   
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY------------------ 229

Query: 622 TLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQ 681
                  L  + N          +    L     S + +   +     +L   D   L+ 
Sbjct: 230 -------LRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAA 278

Query: 682 NQFVG 686
           N   G
Sbjct: 279 NDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 48/255 (18%), Positives = 78/255 (30%), Gaps = 5/255 (1%)

Query: 456 LAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLS 515
              + L  N  S     S     ++  L L++N L     + F   + L  +DL  N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 516 GEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFT 575
             +      GL +L  L L         P     L+ +Q L L  N +  +      +  
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 576 GMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNK 635
            +         I+S      +G+  L+                    LG +  L    N 
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRL-LLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 636 LSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQL 695
           LS    E +  L  L  L L+ N               L     S ++    +P     L
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQR---L 268

Query: 696 SRLSVMNLSYNNLSG 710
           +   +  L+ N+L G
Sbjct: 269 AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 8e-07
 Identities = 45/240 (18%), Positives = 68/240 (28%), Gaps = 5/240 (2%)

Query: 500 SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLS 559
                +     + GL   +P  I         + L  N+              + IL L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 560 LNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEY 619
            N ++ I          + Q   S+ A   +              +       +      
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 620 RSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDL 679
              L  ++ L    N L     +   DL  L  L L  N ++         L SLD L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 680 SQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVY-AGNPELCGLPLR 738
            QN+     P +   L RL  + L  NNLS               +    NP +C    R
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 54/284 (19%), Positives = 96/284 (33%), Gaps = 27/284 (9%)

Query: 116 IPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNF 175
           +P  +      + + L    ++             +L  L L    L  I  +    L  
Sbjct: 26  VPVGIPAA--SQRIFLHGNRISHVPAA--SFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 176 STSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLG 235
                    L +N+   S+ P  F+   +L  L LD   LQ      F  + +L+ LYL 
Sbjct: 82  LEQL----DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 236 FNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDD 295
            N L+ L           +     +  L  L L GN ++ V   + F  L +L  L L  
Sbjct: 138 DNALQAL----------PDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLHQ 186

Query: 296 NSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGIS-DTVPDWF 354
           N       H +    +L+ + L +  +     + L     ++ L ++D     D      
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246

Query: 355 WDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEG 398
           W     +  F  S++ +   LP   L          +++N  +G
Sbjct: 247 WAW---LQKFRGSSSEVPCSLPQ-RLAGRDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 49/277 (17%), Positives = 89/277 (32%), Gaps = 31/277 (11%)

Query: 266 LSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLII-ILLGSCQMGP 324
           + L GN ++ V   S F    NL  L L  N      +  +     L    L  + Q+  
Sbjct: 37  IFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 325 HFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDP 384
             P       ++  L +   G+ +  P  F      +    L +N ++    +       
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-LAALQYLYLQDNALQALPDD------- 147

Query: 385 FSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSG 444
                                N + L L  N+   S+        H L+ L L  N ++ 
Sbjct: 148 ---------------TFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 445 RLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQL 504
             P  +    RL  L L  N  S    +++  L ++Q L L +N  + +  +     + L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW-AWL 250

Query: 505 ILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHG 541
                  + +   +P    + L    +  L +N   G
Sbjct: 251 QKFRGSSSEVPCSLP----QRLAGRDLKRLAANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 44/258 (17%), Positives = 88/258 (34%), Gaps = 15/258 (5%)

Query: 44  NTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLR 103
           + TG ++   +                    + ++H+DLS +    S +   +   +KL+
Sbjct: 15  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 74

Query: 104 YLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLE--HCH 161
            LSL       PI + L   S L  L+LS  +         ++     L  LNL      
Sbjct: 75  NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 134

Query: 162 LPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLE 221
               +   + H++ + + L      +N   S +   +    + + +   DS +L+    +
Sbjct: 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194

Query: 222 PFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESV 281
            F ++  L+ L L              +       L  +  L  L + G     V   ++
Sbjct: 195 EFFQLNYLQHLSLS---------RCYDIIPETLLELGEIPTLKTLQVFGI----VPDGTL 241

Query: 282 FSELSNLKALHLDDNSFT 299
                 L  L ++ + FT
Sbjct: 242 QLLKEALPHLQINCSHFT 259

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 37/277 (13%), Positives = 85/277 (30%), Gaps = 21/277 (7%)

Query: 435 LDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGE- 493
           LDL+   L   +    +    +       +F    + +       +Q + L N+ +    
Sbjct: 5   LDLTGKNLHPDVTG-RLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVST 62

Query: 494 LPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYI 553
           L      CS+L  + L    LS  I   + +    LV L+L           Q    S  
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 554 QILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWK 613
           ++ +L+L+       K +        ++ + L ++      ++            ++   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 614 GSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSR-NNLTGQITPKIDQLK 672
            S           +    +                 L  L+LSR  ++  +   ++ ++ 
Sbjct: 182 LSDSVMLKNDCFQEFFQLNY----------------LQHLSLSRCYDIIPETLLELGEIP 225

Query: 673 SLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLS 709
           +L  L +      G +      L  L +    +  ++
Sbjct: 226 TLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 388 SIDISSNYFEGLIPP--LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGR 445
           ++D++       +    L          R+   + ++   S    +++ +DLSN+++   
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP--FRVQHMDLSNSVIEVS 61

Query: 446 -LPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQL 504
            L     Q  +L  LSL     S  I  ++    ++  L+L   S   E        S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 505 ILM 507
            L 
Sbjct: 122 RLD 124

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 33/278 (11%), Positives = 76/278 (27%), Gaps = 25/278 (8%)

Query: 208 LDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALS 267
           LDL    L   +     R++S   +             ++ ++  + +  S  +++  + 
Sbjct: 5   LDLTGKNLHPDVTG---RLLSQGVIAFR--------CPRSFMDQPLAEHFS-PFRVQHMD 52

Query: 268 LSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHD--------WIPPFQLIIILLGS 319
           LS + +       + S+ S L+ L L+    +    +          +           +
Sbjct: 53  LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

Query: 320 CQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLS 379
            Q        L   N     D ++  +   V      ++         N         + 
Sbjct: 113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172

Query: 380 LRFDPFSSSIDISSNYFEGLIPPL--PSNASVLNLSRNKFSESISFLCSINGHKLEFLDL 437
              +     +  S              +    L+LSR       + L       L+ L +
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232

Query: 438 SNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMG 475
              +  G L            L +  + F+     ++G
Sbjct: 233 FGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIG 267

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 5/177 (2%)

Query: 386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGR 445
            +++D +    + +   +P + + L L+ N+     S         L  L+L  N L+G 
Sbjct: 10  GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 446 LPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLI 505
            P+ +     +  L L  N       K    LH ++TL+LY+N +   +P  F+  + L 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 506 LMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNN 562
            ++L  N  +            +    SL         P    ++  +QI DL  + 
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRK--KSLNGGAARCGAPS---KVRDVQIKDLPHSE 181

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 103 RYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHL 162
           R L L+  +    +   L  L  + +LDLS+   N+ R     +  L  L  L      L
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSH---NRLRALPPALAALRCLEVLQASDNAL 55

Query: 163 PPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQG 217
             +          +   L  L L  N L  S          +LV+L+L  N L  
Sbjct: 56  ENVDG------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 13/104 (12%)

Query: 207 VLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELF--LGKNRLNGTINQWLSRMYKLD 264
           VL L    L  ++L   ++++ +  L L  N L  L   L   R    +    + +  +D
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 265 A---------LSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT 299
                     L L  N L              L  L+L  NS  
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 13/129 (10%)

Query: 409 VLNLSRNKFSESISFLCSING-HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFS 467
           VL+L+       ++ LC +     +  LDLS+N    RL         L  L +     +
Sbjct: 2   VLHLAHKD----LTVLCHLEQLLLVTHLDLSHN----RLRALPPALAALRCLEVLQASDN 53

Query: 468 GKI-PKSMGFLHSIQTLSLYNNSLIG-ELPSFFKSCSQLILMDLGKNGLSGE--IPTWIG 523
                  +  L  +Q L L NN L          SC +L+L++L  N L  E  I   + 
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 524 EGLPKLVVL 532
           E LP +  +
Sbjct: 114 EMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 26/117 (22%)

Query: 627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDF---------- 676
           ++L  +   L  T+   +  L+ +  L+LS N L     P +  L+ L+           
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALEN 57

Query: 677 ------------LDLSQNQFVGG-IPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQS 720
                       L L  N+         L    RL ++NL  N+L  +  +  +L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 26/114 (22%)

Query: 66  TISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKL----------------------R 103
           T+   L +L  + HLDLS N      +P  + +L  L                      +
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVANLPRLQ 68

Query: 104 YLSLSSAEFEG-PIPSQLGNLSRLKYLDLSYINLNKSRDWL-RIIDKLPSLRTL 155
            L L +   +       L +  RL  L+L   +L +      R+ + LPS+ ++
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 13/117 (11%)

Query: 127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLF 186
           + L L++ +L      L  +++L  +  L+L H  L  + P+         ++L  L + 
Sbjct: 1   RVLHLAHKDLTV----LCHLEQLLLVTHLDLSHNRLRALPPA--------LAALRCLEVL 48

Query: 187 ENSLSSSIYPWLFNISSKLVVLDLDSNLLQG-SLLEPFDRMVSLRTLYLGFNELEEL 242
           + S ++           +L  L L +N LQ  + ++P      L  L L  N L + 
Sbjct: 49  QASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 14/149 (9%)

Query: 67  ISPSLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRL 126
           +   + K Y      L        R    + + N    L+  S+     +     N+  L
Sbjct: 12  LKLIMSKRYDGSQQALDLKGL---RSDPDLVAQNIDVVLNRRSSMAAT-LRIIEENIPEL 67

Query: 127 KYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLF 186
             L+LS   L +  D   I+ K P+L+ LNL    L      D +           L+L 
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE----LWLD 123

Query: 187 ENSLSSSIY------PWLFNISSKLVVLD 209
            NSLS +          +     KL+ LD
Sbjct: 124 GNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 7/144 (4%)

Query: 365 NLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSR-NKFSESISF 423
            L    ++     +S R+D    ++D+         P L +    + L+R +  + ++  
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRS---DPDLVAQNIDVVLNRRSSMAATLRI 59

Query: 424 LCSINGHKLEFLDLSNNILSGR--LPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQ 481
           +   N  +L  L+LSNN L     +     +   L +L+L+ N    +          ++
Sbjct: 60  IEE-NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 482 TLSLYNNSLIGELPSFFKSCSQLI 505
            L L  NSL           S + 
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIR 142

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 44/226 (19%), Positives = 71/226 (31%), Gaps = 26/226 (11%)

Query: 73  KLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLS 132
           K+     ++  + + +   +P  +        L LS         + L   +RL  L+L 
Sbjct: 8   KVASHLEVNCDKRNLT--ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 133 YINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSS 192
                     L++   LP L TL+L H  L  +          +   +    L      +
Sbjct: 64  ----RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL------T 113

Query: 193 SIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGT 252
           S+         +L  L L  N          +       L     +LE+L L  N L   
Sbjct: 114 SLPLGALRGLGELQELYLKGN----------ELKTLPPGLLTPTPKLEKLSLANNNLTEL 163

Query: 253 INQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSF 298
               L+ +  LD L L  NSL  +     F     L    L  N +
Sbjct: 164 PAGLLNGLENLDTLLLQENSLYTIPKG--FFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 30/178 (16%), Positives = 46/178 (25%), Gaps = 11/178 (6%)

Query: 266 LSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPH 325
           L LS N L    + +     + L  L+LD    T       +P    + +     Q  P 
Sbjct: 36  LHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94

Query: 326 FPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPF 385
             + L     ++V       +         +L       N       G L          
Sbjct: 95  LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154

Query: 386 SSSIDISSNYFEGLIPPLPSNAS---VLNLSRNKFSESISFLCSINGHKLEFLDLSNN 440
                +++N    L   L +       L L  N              H L F  L  N
Sbjct: 155 -----LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS--HLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 36/195 (18%), Positives = 57/195 (29%), Gaps = 24/195 (12%)

Query: 388 SIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLP 447
            ++        L P LP + ++L+LS N               +L  L+L    L+    
Sbjct: 14  EVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQV 72

Query: 448 DCWMQFDRLAVLSLANN---------------------FFSGKIPKSMGFLHSIQTLSLY 486
           D  +       LS                           +     ++  L  +Q L L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 487 NNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQ 546
            N L    P       +L  + L  N L+      +  GL  L  L L+ N  +  IP  
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLY-TIPKG 190

Query: 547 VCQLSYIQILDLSLN 561
                 +    L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 30/215 (13%), Positives = 51/215 (23%), Gaps = 32/215 (14%)

Query: 470 IPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKL 529
           +P  +        L L  N L     +     ++L  ++L +          +   LP L
Sbjct: 25  LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA---ELTKLQVDGTLPVL 79

Query: 530 VVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS 589
             L L  N+            +   +        S  +                N     
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN----- 134

Query: 590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVG 649
                                  K       +    ++ L  + N L+      +  L  
Sbjct: 135 ---------------------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 650 LVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQF 684
           L  L L  N+L   I         L F  L  N +
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 643 EIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMN 702
           E+  +   + +N  + NLT  + P +   K    L LS+N       ++L   +RL+ +N
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 703 LSYNN 707
           L    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 38/186 (20%), Positives = 58/186 (31%), Gaps = 4/186 (2%)

Query: 553 IQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTW 612
             IL LS N +       L  +T + Q +       +  T  +           ++    
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDR----AELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 613 KGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLK 672
             S      TL  + +LD S N+L+      +  L  L  L L  N L       +    
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 673 SLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPEL 732
            L+ L L+ N         L  L  L  + L  N+L               +   GNP L
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

Query: 733 CGLPLR 738
           C   + 
Sbjct: 209 CNCEIL 214

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 7e-05
 Identities = 52/327 (15%), Positives = 91/327 (27%), Gaps = 23/327 (7%)

Query: 403 LPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDC-----WMQFDRLA 457
           L   A  L L+    S     L  +  H LE L  S N L+  LP+       +  D   
Sbjct: 36  LDRQAHELELNNLGLSS----LPELPPH-LESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 458 VLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGE 517
           + +L++     +                 ++ L               L    +   +G 
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 518 IPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGM 577
                   L  L  L+      +         LS   I+  +         + L   T +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 578 AQKSSSNLAITSNYTFERQGIEFLESYVDNVVL----TWKGSQHEYRSTLGLVKILDFSM 633
              ++    +                  D   L    T+        S L  +    + +
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 634 NKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLC 693
           N  S  I         L  LN+S N L  ++     +L+    L  S N     +P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHL-AEVPELPQ 324

Query: 694 QLSRLSVMNLSYNNLSGKIPLGTQLQS 720
            L +L   ++ YN L     +   ++ 
Sbjct: 325 NLKQL---HVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 53/327 (16%), Positives = 92/327 (28%), Gaps = 15/327 (4%)

Query: 203 SKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYK 262
            +   L+L++  L  SL  P +    L +L    N L EL      L   +    +    
Sbjct: 38  RQAHELELNNLGLS-SL--P-ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 263 LDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQM 322
            D   L               EL N   L + D           +PP    I    +   
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 323 GPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRF 382
                + L     I   + S   + D        ++       L        L  +    
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 383 DPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNIL 442
           +   +  D+  +              +  L ++     +S        +L       N  
Sbjct: 214 NLLKTLPDLPPSLEAL-NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 443 SGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCS 502
           S  +         L  L+++NN    ++P        ++ L    N L  E+P   ++  
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHL-AEVPELPQNLK 327

Query: 503 QLILMDLGKNGLSGEIPTWIGEGLPKL 529
           QL    +  N L  E P    E +  L
Sbjct: 328 QL---HVEYNPLR-EFPDIP-ESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 45/328 (13%), Positives = 92/328 (28%), Gaps = 34/328 (10%)

Query: 262 KLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT--------------LKFSHDWI 307
           +   L L+   L+     S+     +L++L    NS T                 +   +
Sbjct: 39  QAHELELNNLGLS-----SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 308 PPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLS 367
                ++  LG           LQ  + ++++D+ +  +                +  L 
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 368 NNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSI 427
                  LP L+  +   +S   +               A    L      +++ FL +I
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPL----SLESIVAGNNILEELPELQNLPFLTTI 209

Query: 428 NGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYN 487
                    L +   S    +    +         +  F          L  +     Y 
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 488 NSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQV 547
           N+   E+ S       L  +++  N L       +    P+L  L    N     +P   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKL-----IELPALPPRLERLIASFNHL-AEVPELP 323

Query: 548 CQLSYIQILDLSLNNISGI--IPKCLNN 573
             L   + L +  N +     IP+ + +
Sbjct: 324 QNL---KQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 47/315 (14%), Positives = 80/315 (25%), Gaps = 22/315 (6%)

Query: 431 KLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSL 490
           +   L+L+N  LS  LP+       L  L  + N  + ++P+    L S+   +    +L
Sbjct: 39  QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 491 IGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQL 550
               P           ++      +      I      L  L                  
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 551 SYIQILDLSLNNISGIIPK---------CLNNFTGMAQKSSSNLAITSNYTFERQGIEFL 601
              ++ +L                                   L    N  F        
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 602 ESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLT 661
                   L         R                          L  L       N  +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 662 GQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSF 721
            +I    D   SL+ L++S N+ +  +P+   +L RL     S+N+L+    L   L+  
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLAEVPELPQNLKQL 329

Query: 722 NASVYAGNPELCGLP 736
           +      NP L   P
Sbjct: 330 HVE---YNP-LREFP 340

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 48/329 (14%), Positives = 89/329 (27%), Gaps = 29/329 (8%)

Query: 124 SRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLP--PIIPSDLLHLNFSTSSLG 181
            +   L+L+ + L+       + +  P L +L      L   P +P  L  L    ++L 
Sbjct: 38  RQAHELELNNLGLSS------LPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK 91

Query: 182 ALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEE 241
           AL      L          +S+  +    +        +   D     +   L  +    
Sbjct: 92  ALSDLPPLL------EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 242 LFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT-- 299
                        Q L  +  + A + S   L  +          N     L +      
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 300 LKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSH 359
           L   +      + +  L  S +       +L    ++           +          +
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 360 TIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSE 419
                  SN          SL        +++S+N     +P LP     L  S N  +E
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLE------ELNVSNNKLIE-LPALPPRLERLIASFNHLAE 318

Query: 420 SISFLCSINGHKLEFLDLSNNILSGRLPD 448
                 +     L+ L +  N L    PD
Sbjct: 319 VPELPQN-----LKQLHVEYNPLRE-FPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 85  NDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLR 144
            + S + I         L  L++S+ +    +P+    L   + L  S+ +L +      
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLAE------ 318

Query: 145 IIDKLPSLRTLNLEHCHL--PPIIPSDLLHLNFST 177
           + +   +L+ L++E+  L   P IP  +  L  ++
Sbjct: 319 VPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 12/129 (9%)

Query: 25  WGREDDKRDCCYWRGVRCSNTTGHVIVLDLQVLVHSEPLKGTISPSLLKLYHLRHLDLSE 84
               D          +  S      +      L +       I         L  L++S 
Sbjct: 234 NYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN 293

Query: 85  NDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLR 144
           N        E      +L  L  S       +P    N   LK L + Y   N  R++  
Sbjct: 294 NKLI-----ELPALPPRLERLIASFNHLAE-VPELPQN---LKQLHVEY---NPLREFPD 341

Query: 145 IIDKLPSLR 153
           I + +  LR
Sbjct: 342 IPESVEDLR 350

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 27/215 (12%), Positives = 59/215 (27%), Gaps = 21/215 (9%)

Query: 262 KLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFT-------------LKFSHDWIP 308
               ++   +++T  VT++   +L  +  L       T             L+   + I 
Sbjct: 20  NAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT 76

Query: 309 PFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSN 368
               +  L    ++               +  I    ++ T       L+       L  
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 369 NHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSIN 428
           +  +    +              ++   +       S  + L    NK S+        +
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA---S 193

Query: 429 GHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLAN 463
              L  + L NN +S   P        L +++L N
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 28/214 (13%), Positives = 51/214 (23%), Gaps = 17/214 (7%)

Query: 524 EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGI-----------IPKCLN 572
             L   + ++   +     +      L  I  L      ++ I           +    N
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 573 NFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFS 632
             T +A   +         +          + + ++      S      T          
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 633 MNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSL 692
           +      I              LS  N        +  L  L  L    N+     P  L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 693 CQLSRLSVMNLSYNNLSGKIPLG--TQLQSFNAS 724
             L  L  ++L  N +S   PL   + L     +
Sbjct: 192 ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 27/204 (13%), Positives = 63/204 (30%), Gaps = 14/204 (6%)

Query: 98  SLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNL 157
           +L     ++   +     +     +L  +  L      +      +  +  L +L  L L
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT----IEGVQYLNNLIGLEL 70

Query: 158 EHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNIS--SKLVVLDLDSNLL 215
           +   +  + P   L         G      ++++        +++      V  L     
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 216 QGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTG 275
              L    +++ ++  L    N              +    L+ + KL  L    N ++ 
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSI---GNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 276 VVTESVFSELSNLKALHLDDNSFT 299
           +   S  + L NL  +HL +N  +
Sbjct: 188 I---SPLASLPNLIEVHLKNNQIS 208

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 1/107 (0%)

Query: 478 HSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSN 537
           H    L    +  + +          L  + +        +      GL +L  L++  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 538 KFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSN 584
                 P        +  L+LS N +  +  K +   +      S N
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 2/111 (1%)

Query: 629 LDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQ-LKSLDFLDLSQNQFVGG 687
           L  + +         +     L  L +        +  +  + L  L  L + ++     
Sbjct: 13  LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 688 IPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLR 738
            P +     RLS +NLS+N L        Q  S    V +GNP  C   LR
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 37/324 (11%), Positives = 86/324 (26%), Gaps = 30/324 (9%)

Query: 426 SINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGK----IPKSMGFLHSIQ 481
           SI G  L+   ++       +    ++ D +  + L+ N    +    + +++     ++
Sbjct: 4   SIEGKSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 482 TLSLYNNSLI----------GELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVV 531
                +                L      C +L  + L  N         + + L K   
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 532 LSLKSNKFHGNIPFQV----CQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAI 587
           L       +G  P         L  + +   + N        C  N              
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 588 TSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDL 647
            S+       +       + +           +    L    +   +  S  +   +   
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 648 VGLVALNLSRNNLTGQITPKI------DQLKSLDFLDLSQNQFVGGIPSSLCQ-----LS 696
             L  L L+   L+ +    +       +   L  L L  N+       +L       + 
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 697 RLSVMNLSYNNLSGKIPLGTQLQS 720
            L  + L+ N  S +  +  +++ 
Sbjct: 303 DLLFLELNGNRFSEEDDVVDEIRE 326

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 9/151 (5%)

Query: 412 LSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIP 471
           L+     ++  +    N  +   LDL    +   + +     D+   +  ++N    +  
Sbjct: 3   LTAELIEQAAQY---TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKL 56

Query: 472 KSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVV 531
                L  ++TL + NN +        ++   L  + L  N L           L  L  
Sbjct: 57  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 116

Query: 532 LSLKSNKFH---GNIPFQVCQLSYIQILDLS 559
           L +  N          + + ++  +++LD  
Sbjct: 117 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 639 TIPEEIMD------LVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSL 692
           T+P  I            +  NL + ++T  +T   ++L S+D +  + +         +
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--I 64

Query: 693 CQLSRLSVMNLSYNNLSGKIPLG 715
             L  ++ + L+ N L+   PL 
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLA 87

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 18/203 (8%)

Query: 502 SQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLN 561
           ++ I  +L K  ++  +       L  +  +   ++        Q   L  +  L L+ N
Sbjct: 24  AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGN 78

Query: 562 NISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRS 621
            ++    K L N   +         +    + +        S   N +    G  H  + 
Sbjct: 79  KLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ- 135

Query: 622 TLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQ 681
               ++ L    NK++       +  +  +    S  +        +  L  L  L LS+
Sbjct: 136 ----LESLYLGNNKITDITVLSRLTKLDTL----SLEDNQISDIVPLAGLTKLQNLYLSK 187

Query: 682 NQFVGGIPSSLCQLSRLSVMNLS 704
           N        +L  L  L V+ L 
Sbjct: 188 NHISD--LRALAGLKNLDVLELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	789
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.49
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.61
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.53
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.66

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.2e-37  Score=322.94  Aligned_cols=291  Identities=27%  Similarity=0.411  Sum_probs=241.1

Q ss_pred             CHHHHHHHHHHhhcCcCCCCCCCCCCCCCCCCCCCc--eeeeEecCCC--CcEEEEEcCCCCCCCCccc--ccCccccCC
Q 042537            1 MEEEREALLEFKQSLVDEYGILSSWGREDDKRDCCY--WRGVRCSNTT--GHVIVLDLQVLVHSEPLKG--TISPSLLKL   74 (789)
Q Consensus         1 ~~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~~~~~l~~--~l~~~~~~l   74 (789)
                      .|+||+||++||+++.||. .+++|.   .++|||.  |.||+|+...  +||++|+|++    +.+.|  .+|++++++
T Consensus         4 ~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~----~~l~g~~~lp~~l~~L   75 (313)
T d1ogqa_           4 NPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG----LNLPKPYPIPSSLANL   75 (313)
T ss_dssp             CHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC----CCCSSCEECCGGGGGC
T ss_pred             CHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCC----CCCCCCCCCChHHhcC
Confidence            4899999999999999875 699998   5789995  9999998543  4899999999    77776  688999999


Q ss_pred             CCCCEEeCCC-CCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCC
Q 042537           75 YHLRHLDLSE-NDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLR  153 (789)
Q Consensus        75 ~~L~~L~Ls~-n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~  153 (789)
                      ++|++|+|++ |.+++. +|..|+++++|++|+|++|++.+..+..+..+.+|+++++++|.+...  +|..++++++|+
T Consensus        76 ~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~--~p~~l~~l~~L~  152 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT--LPPSISSLPNLV  152 (313)
T ss_dssp             TTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC--CCGGGGGCTTCC
T ss_pred             ccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhccccccccccccc--CchhhccCcccc
Confidence            9999999996 888875 999999999999999999999998899999999999999999998874  678999999999


Q ss_pred             EEEcCCCCCCCCccccccccccCCCC-CCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEE
Q 042537          154 TLNLEHCHLPPIIPSDLLHLNFSTSS-LGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTL  232 (789)
Q Consensus       154 ~L~L~~n~l~~~~~~~~~~~~l~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  232 (789)
                      ++++++|.+.+.+|..+  ..+  .. ++.++++.|++++..+..+...  ....++++++...+.+|..+..+++|+.+
T Consensus       153 ~l~l~~n~l~~~ip~~~--~~l--~~l~~~l~~~~n~l~~~~~~~~~~l--~~~~l~l~~~~~~~~~~~~~~~~~~l~~l  226 (313)
T d1ogqa_         153 GITFDGNRISGAIPDSY--GSF--SKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             EEECCSSCCEEECCGGG--GCC--CTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             eeecccccccccccccc--ccc--ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence            99999999988877433  333  44 4888899998887777665544  45678899888888888888888888888


Q ss_pred             ECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccc
Q 042537          233 YLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQL  312 (789)
Q Consensus       233 ~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L  312 (789)
                      +++          +|.+.+.++ .++.+++|++|+|++|+++|.+|. .|.++++|++|+|++|++++.+| .+..+.+|
T Consensus       227 ~~~----------~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~-~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L  293 (313)
T d1ogqa_         227 HLA----------KNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF  293 (313)
T ss_dssp             ECC----------SSEECCBGG-GCCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEEECC-CSTTGGGS
T ss_pred             ccc----------ccccccccc-ccccccccccccCccCeecccCCh-HHhCCCCCCEEECcCCcccccCC-CcccCCCC
Confidence            888          566655554 477788899999999999888887 58888999999999998887655 34455566


Q ss_pred             eeEeccCcc
Q 042537          313 IIILLGSCQ  321 (789)
Q Consensus       313 ~~L~l~~~~  321 (789)
                      +.+++++|+
T Consensus       294 ~~l~l~~N~  302 (313)
T d1ogqa_         294 DVSAYANNK  302 (313)
T ss_dssp             CGGGTCSSS
T ss_pred             CHHHhCCCc
Confidence            666666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=4.8e-32  Score=280.52  Aligned_cols=259  Identities=32%  Similarity=0.527  Sum_probs=237.7

Q ss_pred             CCCCEEEcCCCcccc--CCCcccccCCCCcEEEcCC-CcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcE
Q 042537          430 HKLEFLDLSNNILSG--RLPDCWMQFDRLAVLSLAN-NFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLIL  506 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  506 (789)
                      .+++.|+|++|.+++  .+|.+++++++|++|+|++ |++.|.+|..|+++++|++|++++|++.+..+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            468899999999987  4789999999999999997 8899999999999999999999999999999999999999999


Q ss_pred             EeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcC-ceEeccCCcccccCCccccccccCcccCCCcc
Q 042537          507 MDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYI-QILDLSLNNISGIIPKCLNNFTGMAQKSSSNL  585 (789)
Q Consensus       507 L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  585 (789)
                      +++++|.+.+.+|..+. .++.|+.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..         
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~---------  199 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL---------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC---------
T ss_pred             cccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc---------
Confidence            99999999989998887 79999999999999999999999888876 88999999999988877655432         


Q ss_pred             ccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecC
Q 042537          586 AITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQIT  665 (789)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  665 (789)
                                                               ..++++++...+.+|..+..+++++.+++++|.+++.+|
T Consensus       200 -----------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~  238 (313)
T d1ogqa_         200 -----------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG  238 (313)
T ss_dssp             -----------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred             -----------------------------------------ccccccccccccccccccccccccccccccccccccccc
Confidence                                                     468999999999999999999999999999999997654


Q ss_pred             cccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCCCCCCC
Q 042537          666 PKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLPLRNKC  741 (789)
Q Consensus       666 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~l~~~c  741 (789)
                       .++.+++|+.|+|++|+++|.+|+.|+++++|++|||++|+|+|.+|..+.+.+++...+.||+.+||.|+. .|
T Consensus       239 -~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         239 -KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             -GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             -ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence             688999999999999999999999999999999999999999999999888899999999999999999875 56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.4e-26  Score=245.23  Aligned_cols=356  Identities=22%  Similarity=0.296  Sum_probs=236.7

Q ss_pred             EccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCC
Q 042537          209 DLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNL  288 (789)
Q Consensus       209 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  288 (789)
                      .++.+.+++.+.  ...+.+|++|+++++.++.+            +.++.+++|++|++++|+++ .+++  ++++++|
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l------------~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L   90 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI------------DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKL   90 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC------------TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc------------cccccCCCCCEEeCcCCcCC-CCcc--ccCCccc
Confidence            566666665433  34567788888885554432            23677888888888888887 4554  7888888


Q ss_pred             cEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeecc
Q 042537          289 KALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSN  368 (789)
Q Consensus       289 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~  368 (789)
                      ++|++++|++...                         + .+..+++|+.++++++.+++..+...   ...+.......
T Consensus        91 ~~L~L~~n~i~~i-------------------------~-~l~~l~~L~~L~~~~~~~~~~~~~~~---~~~~~~~~~~~  141 (384)
T d2omza2          91 VDILMNNNQIADI-------------------------T-PLANLTNLTGLTLFNNQITDIDPLKN---LTNLNRLELSS  141 (384)
T ss_dssp             CEEECCSSCCCCC-------------------------G-GGTTCTTCCEEECCSSCCCCCGGGTT---CTTCSEEEEEE
T ss_pred             ccccccccccccc-------------------------c-cccccccccccccccccccccccccc---ccccccccccc
Confidence            8888888877632                         2 15667777777777777765443321   12445555555


Q ss_pred             ccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCc
Q 042537          369 NHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPD  448 (789)
Q Consensus       369 n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  448 (789)
                      |.+....+. .....  ....                   ..........    ...  ............|...  ...
T Consensus       142 ~~l~~~~~~-~~~~~--~~~~-------------------~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~--~~~  191 (384)
T d2omza2         142 NTISDISAL-SGLTS--LQQL-------------------SFGNQVTDLK----PLA--NLTTLERLDISSNKVS--DIS  191 (384)
T ss_dssp             EEECCCGGG-TTCTT--CSEE-------------------EEEESCCCCG----GGT--TCTTCCEEECCSSCCC--CCG
T ss_pred             ccccccccc-ccccc--cccc-------------------ccccccchhh----hhc--cccccccccccccccc--ccc
Confidence            554421111 00000  0000                   0000000000    000  0133444455555442  345


Q ss_pred             ccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCC
Q 042537          449 CWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPK  528 (789)
Q Consensus       449 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~  528 (789)
                      .+..+++++.+++++|.+++..|  +...++|++|++++|.++..  ..+..+++|+.|++++|.++ .++. +. .+++
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~~~~-~~-~~~~  264 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-NLAP-LS-GLTK  264 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-GT-TCTT
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccC-CCCc-cc-cccc
Confidence            56778888888888888886544  45567888888888888743  35778888888999988888 4443 22 5788


Q ss_pred             CcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCccccccccccccccccee
Q 042537          529 LVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNV  608 (789)
Q Consensus       529 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  608 (789)
                      |++|++++|++++..  .+..++.++.+++++|.+++.  ..+..+                                  
T Consensus       265 L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~----------------------------------  306 (384)
T d2omza2         265 LTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNL----------------------------------  306 (384)
T ss_dssp             CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGC----------------------------------
T ss_pred             CCEeeccCcccCCCC--ccccccccccccccccccccc--cccchh----------------------------------
Confidence            999999988887543  366788888999988887743  123333                                  


Q ss_pred             EEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccC
Q 042537          609 VLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGI  688 (789)
Q Consensus       609 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  688 (789)
                                     +.++.|++++|++++..+  +..+++|++|++++|++++ ++ .++++++|++|++++|++++..
T Consensus       307 ---------------~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         307 ---------------KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             ---------------TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             ---------------cccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCCh
Confidence                           334889999999986533  8889999999999999984 43 6899999999999999999776


Q ss_pred             chhhhcCCCCCeEeccCC
Q 042537          689 PSSLCQLSRLSVMNLSYN  706 (789)
Q Consensus       689 p~~l~~l~~L~~L~ls~N  706 (789)
                      |  +.++++|++|++++|
T Consensus       368 ~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         368 P--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             G--GTTCTTCSEEECCCE
T ss_pred             h--hccCCCCCEeeCCCC
Confidence            5  889999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=3.3e-25  Score=236.37  Aligned_cols=340  Identities=24%  Similarity=0.297  Sum_probs=212.4

Q ss_pred             CCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhh
Q 042537          204 KLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFS  283 (789)
Q Consensus       204 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  283 (789)
                      +|++|+++++.|+.+  +.++.+++|++|++++|+|+          +..  .++++++|++|++++|++.+ +++  +.
T Consensus        45 ~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~----------~l~--~l~~L~~L~~L~L~~n~i~~-i~~--l~  107 (384)
T d2omza2          45 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT----------DIT--PLKNLTKLVDILMNNNQIAD-ITP--LA  107 (384)
T ss_dssp             TCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC----------CCG--GGTTCTTCCEEECCSSCCCC-CGG--GT
T ss_pred             CCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC----------CCc--cccCCccccccccccccccc-ccc--cc
Confidence            688888888888754  45777888888888854443          332  27788888888888888873 443  77


Q ss_pred             cCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCe
Q 042537          284 ELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIAD  363 (789)
Q Consensus       284 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~  363 (789)
                      .+++|+.|+++++.+.......                          ....+.......+.+....+...... .....
T Consensus       108 ~l~~L~~L~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~  160 (384)
T d2omza2         108 NLTNLTGLTLFNNQITDIDPLK--------------------------NLTNLNRLELSSNTISDISALSGLTS-LQQLS  160 (384)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGT--------------------------TCTTCSEEEEEEEEECCCGGGTTCTT-CSEEE
T ss_pred             cccccccccccccccccccccc--------------------------cccccccccccccccccccccccccc-ccccc
Confidence            8888888888888776433211                          12222333333333222211111000 00000


Q ss_pred             eeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccc
Q 042537          364 FNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILS  443 (789)
Q Consensus       364 L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~  443 (789)
                      .........      .+............                     .|........   ...++++.+++++|.++
T Consensus       161 ~~~~~~~~~------~~~~~~~~~~~~~~---------------------~~~~~~~~~~---~~l~~~~~l~l~~n~i~  210 (384)
T d2omza2         161 FGNQVTDLK------PLANLTTLERLDIS---------------------SNKVSDISVL---AKLTNLESLIATNNQIS  210 (384)
T ss_dssp             EEESCCCCG------GGTTCTTCCEEECC---------------------SSCCCCCGGG---GGCTTCSEEECCSSCCC
T ss_pred             cccccchhh------hhcccccccccccc---------------------cccccccccc---ccccccceeeccCCccC
Confidence            000000000      11111111222222                     2222111111   11166777777777777


Q ss_pred             cCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhh
Q 042537          444 GRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIG  523 (789)
Q Consensus       444 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~  523 (789)
                      +..|  +..+++|+.|++++|.++..  +.+..+++|+.|++++|.+++..+  +..+++|++|++++|+++ .++..  
T Consensus       211 ~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~-~~~~~--  281 (384)
T d2omza2         211 DITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPL--  281 (384)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGGG--
T ss_pred             CCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccC-CCCcc--
Confidence            5443  45567788888888877742  356777888888888888775433  677888888888888887 44432  


Q ss_pred             hcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCccccccccccccc
Q 042537          524 EGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLES  603 (789)
Q Consensus       524 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~  603 (789)
                      ..++.++.+.++.|++.+.  ..+..+++++.|++++|++++..+  +..+++                           
T Consensus       282 ~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~---------------------------  330 (384)
T d2omza2         282 AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTK---------------------------  330 (384)
T ss_dssp             TTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTT---------------------------
T ss_pred             ccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCC---------------------------
Confidence            2578888888888888753  346778888888998888876532  444433                           


Q ss_pred             ccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCc
Q 042537          604 YVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQ  683 (789)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  683 (789)
                                            |+.|++++|++++ ++ .+.++++|++|++++|++++.+|  +.++++|+.|+|++|.
T Consensus       331 ----------------------L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         331 ----------------------LQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             ----------------------CCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             ----------------------CCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence                                  4889999999884 44 58899999999999999986554  8899999999999883

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-25  Score=225.96  Aligned_cols=230  Identities=19%  Similarity=0.110  Sum_probs=187.2

Q ss_pred             CEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCC-
Q 042537          433 EFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGK-  511 (789)
Q Consensus       433 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~-  511 (789)
                      ..++.+++.++ .+|..+.  +++++|+|++|+|++..+.+|.+++.|++|++++|.+..+.+..+..+..++.++... 
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            34566666666 4554443  4678888888888877777788888888888888888888888888888888887654 


Q ss_pred             CcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCc
Q 042537          512 NGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNY  591 (789)
Q Consensus       512 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~  591 (789)
                      +.++ .++...+.++++|++|++++|.+....+..+....+|+.+++++|+++++.+..|..++++              
T Consensus        91 ~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L--------------  155 (284)
T d1ozna_          91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------  155 (284)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             cccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch--------------
Confidence            4555 6655555578888888888888877667777888889999999999887777766665555              


Q ss_pred             ccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccC
Q 042537          592 TFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQL  671 (789)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  671 (789)
                                                         +.|++++|++++..+..|.++++|+.+++++|++++..|..|..+
T Consensus       156 -----------------------------------~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l  200 (284)
T d1ozna_         156 -----------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (284)
T ss_dssp             -----------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             -----------------------------------hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhh
Confidence                                               889999999998888889999999999999999998889999999


Q ss_pred             CCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCC
Q 042537          672 KSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG  715 (789)
Q Consensus       672 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  715 (789)
                      ++|++||+++|.+.+..|..|..+++|++|++++|++.|.++..
T Consensus       201 ~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             hhcccccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence            99999999999999998899999999999999999999887753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3.8e-24  Score=219.82  Aligned_cols=267  Identities=22%  Similarity=0.279  Sum_probs=166.6

Q ss_pred             CCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCc
Q 042537          386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF  465 (789)
Q Consensus       386 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  465 (789)
                      .+.++.++..++..++..++++++|++++|+|+...+..+. .+++|++|++++|.+....|.+|.++++|+.|++++|+
T Consensus        12 ~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~-~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhh-ccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            45667777777666555556677777777766665543221 22667777777777776666667777777777777777


Q ss_pred             CcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCccccc-CchhhhhcCCCCcEEEcCCCcccccCC
Q 042537          466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGE-IPTWIGEGLPKLVVLSLKSNKFHGNIP  544 (789)
Q Consensus       466 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~  544 (789)
                      ++. +|..+  ...++.|++.+|.+.+..+..+.....+..++...|..... .....+..+++|+.+++++|.+.. +|
T Consensus        91 l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~  166 (305)
T d1xkua_          91 LKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IP  166 (305)
T ss_dssp             CSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CC
T ss_pred             cCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cC
Confidence            763 33322  24566777777777665555566666666677666644311 112223356677777777776653 33


Q ss_pred             CCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccC
Q 042537          545 FQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLG  624 (789)
Q Consensus       545 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  624 (789)
                      ..  .+++|+.|++++|..++..+..|..++.+                                               
T Consensus       167 ~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l-----------------------------------------------  197 (305)
T d1xkua_         167 QG--LPPSLTELHLDGNKITKVDAASLKGLNNL-----------------------------------------------  197 (305)
T ss_dssp             SS--CCTTCSEEECTTSCCCEECTGGGTTCTTC-----------------------------------------------
T ss_pred             cc--cCCccCEEECCCCcCCCCChhHhhccccc-----------------------------------------------
Confidence            32  24567777777776666665555544444                                               


Q ss_pred             ceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhh------hcCCCC
Q 042537          625 LVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSL------CQLSRL  698 (789)
Q Consensus       625 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l------~~l~~L  698 (789)
                        ++|++++|.+++..+..|.++++|++|+|++|+|+ .+|.+|..+++|+.|+|++|+|+......|      ..+.+|
T Consensus       198 --~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L  274 (305)
T d1xkua_         198 --AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY  274 (305)
T ss_dssp             --CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred             --cccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCC
Confidence              66777777777666667777777777777777776 456677777777777777777765433332      345667


Q ss_pred             CeEeccCCccc
Q 042537          699 SVMNLSYNNLS  709 (789)
Q Consensus       699 ~~L~ls~N~l~  709 (789)
                      +.|++++|++.
T Consensus       275 ~~L~L~~N~~~  285 (305)
T d1xkua_         275 SGVSLFSNPVQ  285 (305)
T ss_dssp             SEEECCSSSSC
T ss_pred             CEEECCCCcCc
Confidence            77777777764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.2e-24  Score=218.90  Aligned_cols=234  Identities=22%  Similarity=0.244  Sum_probs=187.9

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEcc-CCeeeeeCCcCccCCCCCcEEe
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLY-NNSLIGELPSFFKSCSQLILMD  508 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~  508 (789)
                      +.+++|+|++|+|+...+.+|.++++|++|++++|++....+..+..+..++.+... .+.++...+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            567888888888887777788888889999999888888888888888888888764 5667767778888889999999


Q ss_pred             CCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccc
Q 042537          509 LGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAIT  588 (789)
Q Consensus       509 ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  588 (789)
                      +++|.+. .++...+...++|+.+++++|+++++.+..|..+++|+.|++++|++++..+..|.++++|           
T Consensus       112 l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L-----------  179 (284)
T d1ozna_         112 LDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-----------  179 (284)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred             cCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc-----------
Confidence            9999887 5555555567889999999999987777788888899999999999888777777766666           


Q ss_pred             cCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCccc
Q 042537          589 SNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKI  668 (789)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  668 (789)
                                                            +.+++++|++++..|..|..+++|++|++++|++++..+..|
T Consensus       180 --------------------------------------~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~  221 (284)
T d1ozna_         180 --------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL  221 (284)
T ss_dssp             --------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred             --------------------------------------chhhhhhccccccChhHhhhhhhccccccccccccccccccc
Confidence                                                  889999999998888999999999999999999998778888


Q ss_pred             ccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCC
Q 042537          669 DQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPL  714 (789)
Q Consensus       669 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  714 (789)
                      +.+++|+.|++++|.+.+.-+. ..-...++.+....+++.|..|.
T Consensus       222 ~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         222 APLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             TTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESG
T ss_pred             ccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCch
Confidence            9999999999999998865432 11122355666677788777664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.2e-23  Score=212.85  Aligned_cols=266  Identities=23%  Similarity=0.259  Sum_probs=218.9

Q ss_pred             CCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEc
Q 042537          406 NASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSL  485 (789)
Q Consensus       406 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  485 (789)
                      ..+.++.+++.++..+..+.    +++++|++++|+|+...+.+|.++++|++|++++|.+....|..|..++.|++|++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~----~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCccCCCCC----CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            45678888888887765432    68999999999999766778999999999999999999888889999999999999


Q ss_pred             cCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCccc--ccCCCCccCCCcCceEeccCCcc
Q 042537          486 YNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFH--GNIPFQVCQLSYIQILDLSLNNI  563 (789)
Q Consensus       486 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l  563 (789)
                      ++|+++.. |..+  ...++.|++.+|.+. .++...+.....++.++...|...  ...+..+..+++|+.+++++|.+
T Consensus        87 ~~n~l~~l-~~~~--~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          87 SKNQLKEL-PEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CSSCCSBC-CSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             cCCccCcC-ccch--hhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            99999854 4332  357899999999998 677776667788899999887554  33456788889999999999988


Q ss_pred             cccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchh
Q 042537          564 SGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEE  643 (789)
Q Consensus       564 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  643 (789)
                      +.. |..+                                                   .++++.|++++|..++..+..
T Consensus       163 ~~l-~~~~---------------------------------------------------~~~L~~L~l~~n~~~~~~~~~  190 (305)
T d1xkua_         163 TTI-PQGL---------------------------------------------------PPSLTELHLDGNKITKVDAAS  190 (305)
T ss_dssp             CSC-CSSC---------------------------------------------------CTTCSEEECTTSCCCEECTGG
T ss_pred             ccc-Cccc---------------------------------------------------CCccCEEECCCCcCCCCChhH
Confidence            743 2211                                                   234589999999999999999


Q ss_pred             hhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCC--------
Q 042537          644 IMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLG--------  715 (789)
Q Consensus       644 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~--------  715 (789)
                      |..++.+++|++++|.+++..+..+.++++|++|+|++|+|+ .+|..|..+++|++|++++|+++ .++..        
T Consensus       191 ~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~  268 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYN  268 (305)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCC
T ss_pred             hhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChhhccCcchh
Confidence            999999999999999999988999999999999999999998 56889999999999999999998 44432        


Q ss_pred             CccccccccccCCCCCCC
Q 042537          716 TQLQSFNASVYAGNPELC  733 (789)
Q Consensus       716 ~~~~~~~~~~~~~n~~lc  733 (789)
                      ....++....+.|||+-+
T Consensus       269 ~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         269 TKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             TTSCCCSEEECCSSSSCG
T ss_pred             cccCCCCEEECCCCcCcc
Confidence            123345556688998865

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-23  Score=208.76  Aligned_cols=205  Identities=21%  Similarity=0.249  Sum_probs=151.6

Q ss_pred             cCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcE
Q 042537          452 QFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVV  531 (789)
Q Consensus       452 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~  531 (789)
                      +...+.+++.+++.++ .+|..+.  +++++|+|++|+|+++.+..|.++++|++|++++|+|+ .+|..  ..+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--cccccccc
Confidence            3344555666666666 3454442  45677777777776666666777777777777777776 55543  24777777


Q ss_pred             EEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEE
Q 042537          532 LSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLT  611 (789)
Q Consensus       532 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (789)
                      |++++|++++ .+..+..+++|+.|++++|.+.+..+..+..+.++                                  
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l----------------------------------  126 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL----------------------------------  126 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC----------------------------------
T ss_pred             cccccccccc-cccccccccccccccccccccceeecccccccccc----------------------------------
Confidence            7777777763 45567778888888888887776655555444443                                  


Q ss_pred             eeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchh
Q 042537          612 WKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSS  691 (789)
Q Consensus       612 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  691 (789)
                                     +.|++++|.++...+..+..++.|+.|++++|++++..+..|..+++|++|||++|+|+ .+|+.
T Consensus       127 ---------------~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~  190 (266)
T d1p9ag_         127 ---------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG  190 (266)
T ss_dssp             ---------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             ---------------ccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChh
Confidence                           78888888888777777888899999999999999877788899999999999999998 67888


Q ss_pred             hhcCCCCCeEeccCCcccccCC
Q 042537          692 LCQLSRLSVMNLSYNNLSGKIP  713 (789)
Q Consensus       692 l~~l~~L~~L~ls~N~l~~~~p  713 (789)
                      +..+++|+.|++++|++.|.+.
T Consensus       191 ~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         191 FFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             TTTTCCCSEEECCSCCBCCSGG
T ss_pred             HCCCCCCCEEEecCCCCCCCcc
Confidence            8889999999999999887654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.8e-22  Score=197.86  Aligned_cols=200  Identities=21%  Similarity=0.163  Sum_probs=167.5

Q ss_pred             CCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          430 HKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      ..+.+++.++++++ .+|..+.  +++++|+|++|+|++..+.+|..+++|++|++++|+++...  .+..+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccc
Confidence            55667788888888 4565553  47888999999988777778888889999999999888543  3567889999999


Q ss_pred             CCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCcccccc
Q 042537          510 GKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITS  589 (789)
Q Consensus       510 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  589 (789)
                      ++|+++ .++..+. ++++|+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..++.+            
T Consensus        85 s~N~l~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l------------  150 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL------------  150 (266)
T ss_dssp             CSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------------
T ss_pred             cccccc-ccccccc-cccccccccccccccceeeccccccccccccccccccccceeccccccccccc------------
Confidence            999988 5555554 68999999999999988778888889999999999999987776666655555            


Q ss_pred             CcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccc
Q 042537          590 NYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKID  669 (789)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  669 (789)
                                                           +.+++++|++++..+..|..+++|++|+|++|+|+ .+|+.+.
T Consensus       151 -------------------------------------~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~  192 (266)
T d1p9ag_         151 -------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (266)
T ss_dssp             -------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             -------------------------------------hhcccccccccccCccccccccccceeecccCCCc-ccChhHC
Confidence                                                 89999999999888888999999999999999999 7898899


Q ss_pred             cCCCCCEEeCCCCcccc
Q 042537          670 QLKSLDFLDLSQNQFVG  686 (789)
Q Consensus       670 ~l~~L~~L~Ls~N~l~~  686 (789)
                      .+++|+.|+|++|.+..
T Consensus       193 ~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         193 GSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTCCCSEEECCSCCBCC
T ss_pred             CCCCCCEEEecCCCCCC
Confidence            99999999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=1.4e-17  Score=174.31  Aligned_cols=314  Identities=26%  Similarity=0.340  Sum_probs=148.7

Q ss_pred             CCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEE
Q 042537           76 HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTL  155 (789)
Q Consensus        76 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L  155 (789)
                      ++++|||++++++  .+|+.   +++|++|+|++|+|+ .+|+.+   .+|+.|++++|+++.++++|      +.|++|
T Consensus        39 ~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~~lp------~~L~~L  103 (353)
T d1jl5a_          39 QAHELELNNLGLS--SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSDLP------PLLEYL  103 (353)
T ss_dssp             TCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCCSCC------TTCCEE
T ss_pred             CCCEEEeCCCCCC--CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhhhhc------cccccc
Confidence            4556666666665  24532   345666666666665 345432   35666666666665543322      346666


Q ss_pred             EcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECC
Q 042537          156 NLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLG  235 (789)
Q Consensus       156 ~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  235 (789)
                      ++++|.+.....  .  ..+  ++|++|+++++.+.... .    ....+..+.+..+....  ...+..++.++.+.++
T Consensus       104 ~L~~n~l~~lp~--~--~~l--~~L~~L~l~~~~~~~~~-~----~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_         104 GVSNNQLEKLPE--L--QNS--SFLKIIDVDNNSLKKLP-D----LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYAD  170 (353)
T ss_dssp             ECCSSCCSSCCC--C--TTC--TTCCEEECCSSCCSCCC-C----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECC
T ss_pred             cccccccccccc--h--hhh--ccceeeccccccccccc-c----ccccccchhhccccccc--cccccccccceecccc
Confidence            666666554322  1  222  55555555555443211 1    11245556555554432  2345555666666666


Q ss_pred             CCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeE
Q 042537          236 FNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIII  315 (789)
Q Consensus       236 ~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L  315 (789)
                      +|..+..          .    ......+.+...++.+. .++.  +..++.|+.+++++|.....              
T Consensus       171 ~n~~~~~----------~----~~~~~~~~l~~~~~~~~-~~~~--~~~l~~L~~l~l~~n~~~~~--------------  219 (353)
T d1jl5a_         171 NNSLKKL----------P----DLPLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTL--------------  219 (353)
T ss_dssp             SSCCSSC----------C----CCCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSC--------------
T ss_pred             ccccccc----------c----ccccccccccccccccc-cccc--cccccccccccccccccccc--------------
Confidence            4432211          0    01122344455444443 3332  44555666666665544311              


Q ss_pred             eccCccCCCCCchhccCCCCccEEEccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCc
Q 042537          316 LLGSCQMGPHFPKWLQTQNQIEVLDISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNY  395 (789)
Q Consensus       316 ~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~  395 (789)
                                 +   ....++..+.+.++.+.....     ....+.                         ..++..+.
T Consensus       220 -----------~---~~~~~l~~~~~~~~~~~~~~~-----~~~~l~-------------------------~~~~~~~~  255 (353)
T d1jl5a_         220 -----------P---DLPPSLEALNVRDNYLTDLPE-----LPQSLT-------------------------FLDVSENI  255 (353)
T ss_dssp             -----------C---SCCTTCCEEECCSSCCSCCCC-----CCTTCC-------------------------EEECCSSC
T ss_pred             -----------c---ccccccccccccccccccccc-----cccccc-------------------------cccccccc
Confidence                       1   011223333333333321110     011222                         22222222


Q ss_pred             ccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCcccc
Q 042537          396 FEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMG  475 (789)
Q Consensus       396 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  475 (789)
                      +.+. ...+......++..+.+.+....     .++|++|++++|+++ .+|..   +++|+.|++++|+|+ .+|..  
T Consensus       256 ~~~l-~~l~~~~~~~~~~~~~~~~~~~~-----~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~--  322 (353)
T d1jl5a_         256 FSGL-SELPPNLYYLNASSNEIRSLCDL-----PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL--  322 (353)
T ss_dssp             CSEE-SCCCTTCCEEECCSSCCSEECCC-----CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC--
T ss_pred             cccc-ccccchhcccccccCcccccccc-----CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc--
Confidence            2221 11122333444444444433211     156777777777776 44432   466777788877777 34432  


Q ss_pred             ccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCC
Q 042537          476 FLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLG  510 (789)
Q Consensus       476 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls  510 (789)
                       +++|++|++++|+++ .+|..   ..+|+.|.+.
T Consensus       323 -~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         323 -PQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             -CTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             -cCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence             456778888888776 44542   2356666553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=6.7e-17  Score=168.94  Aligned_cols=315  Identities=21%  Similarity=0.265  Sum_probs=189.3

Q ss_pred             CCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCccccccccccCCCC
Q 042537          100 NKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPIIPSDLLHLNFSTSS  179 (789)
Q Consensus       100 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~  179 (789)
                      .++++|||+++.++ .+|+.   .++|++|+|++|+++.++   ..   +.+|+.|++++|.++....            
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~lp---~~---~~~L~~L~l~~n~l~~l~~------------   95 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTELP---EL---PQSLKSLLVDNNNLKALSD------------   95 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSCC---CC---CTTCCEEECCSSCCSCCCS------------
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCcccc---cc---hhhhhhhhhhhcccchhhh------------
Confidence            46889999999988 56753   468899999999888753   22   4578888888887654211            


Q ss_pred             CCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcEEECCCCCccEEecCCCcCcccchhhhhC
Q 042537          180 LGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRTLYLGFNELEELFLGKNRLNGTINQWLSR  259 (789)
Q Consensus       180 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~  259 (789)
                                           .++.|++|++++|.+... | .++.+++|+.|+++++.++.          ..    ..
T Consensus        96 ---------------------lp~~L~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~~~~~~----------~~----~~  138 (353)
T d1jl5a_          96 ---------------------LPPLLEYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKK----------LP----DL  138 (353)
T ss_dssp             ---------------------CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSC----------CC----CC
T ss_pred             ---------------------hccccccccccccccccc-c-chhhhccceeeccccccccc----------cc----cc
Confidence                                 012466666666666543 2 24556666666666443321          11    11


Q ss_pred             CCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccCCcccccccCCCCCcccceeEeccCccCCCCCchhccCCCCccEE
Q 042537          260 MYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDDNSFTLKFSHDWIPPFQLIIILLGSCQMGPHFPKWLQTQNQIEVL  339 (789)
Q Consensus       260 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  339 (789)
                      ...+..+.+..+... ...  .+..++.++.+++++|.+......    ....+.+....+.+. .++ .+..++.|+.+
T Consensus       139 ~~~l~~l~~~~~~~~-~~~--~l~~l~~l~~L~l~~n~~~~~~~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l  209 (353)
T d1jl5a_         139 PPSLEFIAAGNNQLE-ELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTI  209 (353)
T ss_dssp             CTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEE
T ss_pred             cccccchhhcccccc-ccc--cccccccceecccccccccccccc----ccccccccccccccc-ccc-ccccccccccc
Confidence            335556666555544 111  255566666777766655422111    111222222222221 222 23445566666


Q ss_pred             EccCCcCCCCcchhHhhhccCCCeeeeccccccccCCCCCCCCCCCCCEEEccCCcccccCCCCCCCCcEEEcCCCcCcc
Q 042537          340 DISDAGISDTVPDWFWDLSHTIADFNLSNNHIKGKLPNLSLRFDPFSSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSE  419 (789)
Q Consensus       340 ~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~  419 (789)
                      ++++|......                              .....+..+.+.++.+... +..+..+...++..+.+.+
T Consensus       210 ~l~~n~~~~~~------------------------------~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  258 (353)
T d1jl5a_         210 YADNNLLKTLP------------------------------DLPPSLEALNVRDNYLTDL-PELPQSLTFLDVSENIFSG  258 (353)
T ss_dssp             ECCSSCCSSCC------------------------------SCCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSE
T ss_pred             ccccccccccc------------------------------ccccccccccccccccccc-ccccccccccccccccccc
Confidence            66665543211                              1122345555555555432 3345677888887776654


Q ss_pred             ccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCcc
Q 042537          420 SISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFK  499 (789)
Q Consensus       420 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  499 (789)
                      .....     ......++..+.+.+.    ...+++|++|++++|+++ .+|..   +++|+.|++++|+|+ .+|..  
T Consensus       259 l~~l~-----~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~--  322 (353)
T d1jl5a_         259 LSELP-----PNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL--  322 (353)
T ss_dssp             ESCCC-----TTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC--
T ss_pred             ccccc-----chhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc--
Confidence            32211     4456778888777633    234678999999999999 45643   578999999999998 45543  


Q ss_pred             CCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcC
Q 042537          500 SCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLK  535 (789)
Q Consensus       500 ~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~  535 (789)
                       +++|++|++++|+++ .+|..    ..+|+.|.+.
T Consensus       323 -~~~L~~L~L~~N~L~-~lp~~----~~~L~~L~~~  352 (353)
T d1jl5a_         323 -PQNLKQLHVEYNPLR-EFPDI----PESVEDLRMN  352 (353)
T ss_dssp             -CTTCCEEECCSSCCS-SCCCC----CTTCCEEECC
T ss_pred             -cCCCCEEECcCCcCC-CCCcc----ccccCeeECc
Confidence             568999999999998 88853    3468888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-19  Score=198.08  Aligned_cols=84  Identities=21%  Similarity=0.083  Sum_probs=40.6

Q ss_pred             eeEEEcccCccccc----cchhhh-ccccCcEEEccCCcceee----cCcccccCCCCCEEeCCCCcccccCchhh----
Q 042537          626 VKILDFSMNKLSGT----IPEEIM-DLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDLSQNQFVGGIPSSL----  692 (789)
Q Consensus       626 L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l----  692 (789)
                      |+.|||++|++++.    +++.+. ..+.|++|+|++|+|+..    ++..+...++|++|||++|+|+......+    
T Consensus       342 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l  421 (460)
T d1z7xw1         342 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV  421 (460)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred             hhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHH
Confidence            35555555555432    222222 234466666666665532    23334445566666666666553322222    


Q ss_pred             h-cCCCCCeEeccCCccc
Q 042537          693 C-QLSRLSVMNLSYNNLS  709 (789)
Q Consensus       693 ~-~l~~L~~L~ls~N~l~  709 (789)
                      . ....|+.|++.+|++.
T Consensus       422 ~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         422 RQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             TSTTCCCCEEECTTCCCC
T ss_pred             HhCCCccCEEECCCCCCC
Confidence            1 2234666666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=6e-18  Score=164.50  Aligned_cols=203  Identities=22%  Similarity=0.324  Sum_probs=133.1

Q ss_pred             EEcCCCccccCCCcccccCCCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcc
Q 042537          435 LDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGL  514 (789)
Q Consensus       435 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  514 (789)
                      ++++.+++++..  .+..+.+|+.|++.+|.++.. + .+..+++|++|++++|.+++..+  +..+++++.+++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            445555554332  344556666666666666632 2 36666677777777776664432  66667777777777766


Q ss_pred             cccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccc
Q 042537          515 SGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFE  594 (789)
Q Consensus       515 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~  594 (789)
                      + .++. +. ++++|+.+++++|...+..  .+...+.++.+.++++.+....  .+..                     
T Consensus        98 ~-~i~~-l~-~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~---------------------  149 (227)
T d1h6ua2          98 K-NVSA-IA-GLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAG---------------------  149 (227)
T ss_dssp             S-CCGG-GT-TCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGG---------------------
T ss_pred             c-cccc-cc-ccccccccccccccccccc--hhccccchhhhhchhhhhchhh--hhcc---------------------
Confidence            6 4543 33 5677777777777665332  3455667777777776655322  1222                     


Q ss_pred             cccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCC
Q 042537          595 RQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSL  674 (789)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  674 (789)
                                                  .+.|+.|++++|.+.+..  .++++++|++|+|++|++++ ++ .++++++|
T Consensus       150 ----------------------------~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L  197 (227)
T d1h6ua2         150 ----------------------------LTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNL  197 (227)
T ss_dssp             ----------------------------CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTC
T ss_pred             ----------------------------ccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCC
Confidence                                        233478888888876433  37888899999999999885 33 38888999


Q ss_pred             CEEeCCCCcccccCchhhhcCCCCCeEeccC
Q 042537          675 DFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY  705 (789)
Q Consensus       675 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  705 (789)
                      ++|+|++|+++...  .++.+++|++|++++
T Consensus       198 ~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         198 IEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             CEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            99999999988653  378889999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.2e-17  Score=160.50  Aligned_cols=191  Identities=25%  Similarity=0.301  Sum_probs=141.5

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCC
Q 042537           70 SLLKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKL  149 (789)
Q Consensus        70 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  149 (789)
                      .+..+.+|++|++.+|+|+.  ++ .+..+++|++|++++|.+++..|  +.++++|+++++++|.++.+    ..+.++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i----~~l~~l  106 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV----SAIAGL  106 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC----GGGTTC
T ss_pred             CHHHcCCcCEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc----cccccc
Confidence            45678889999999999884  43 57889999999999999886543  88999999999999988875    357789


Q ss_pred             CCCCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCC
Q 042537          150 PSLRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSL  229 (789)
Q Consensus       150 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L  229 (789)
                      ++|+.++++++...+..+  +..  .  +.++.+.++.+.+....+  +.. .++|+.|++++|.+...  ..++++++|
T Consensus       107 ~~L~~l~l~~~~~~~~~~--~~~--~--~~~~~l~~~~~~~~~~~~--~~~-~~~L~~L~l~~n~~~~~--~~l~~l~~L  175 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDVTP--LAG--L--SNLQVLYLDLNQITNISP--LAG-LTNLQYLSIGNAQVSDL--TPLANLSKL  175 (227)
T ss_dssp             TTCCEEECTTSCCCCCGG--GTT--C--TTCCEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             ccccccccccccccccch--hcc--c--cchhhhhchhhhhchhhh--hcc-ccccccccccccccccc--hhhcccccc
Confidence            999999999988776544  222  2  778888888877764332  223 34788888888887643  347778888


Q ss_pred             cEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEEEccC
Q 042537          230 RTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKALHLDD  295 (789)
Q Consensus       230 ~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  295 (789)
                      +.|++++|++          ++.  ..++++++|++|+|++|+++ .++.  +.++++|++|++++
T Consensus       176 ~~L~Ls~n~l----------~~l--~~l~~l~~L~~L~Ls~N~lt-~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         176 TTLKADDNKI----------SDI--SPLASLPNLIEVHLKNNQIS-DVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CEEECCSSCC----------CCC--GGGGGCTTCCEEECTTSCCC-BCGG--GTTCTTCCEEEEEE
T ss_pred             eecccCCCcc----------CCC--hhhcCCCCCCEEECcCCcCC-CCcc--cccCCCCCEEEeeC
Confidence            8888874443          332  12677888888888888887 4554  77888888888763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.1e-19  Score=198.12  Aligned_cols=112  Identities=21%  Similarity=0.239  Sum_probs=56.0

Q ss_pred             cEEEEEcCCCCCCCCccccc-CccccCCCCCCEEeCCCCCCCCC---CCcccccCCCCCCEEecCCCcCCCC----CCcc
Q 042537           48 HVIVLDLQVLVHSEPLKGTI-SPSLLKLYHLRHLDLSENDFSGS---RIPEFIGSLNKLRYLSLSSAEFEGP----IPSQ  119 (789)
Q Consensus        48 ~v~~l~L~~~~~~~~l~~~l-~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~Ls~n~i~~~----~p~~  119 (789)
                      +++.||+++    +++++.- ..-+..++++|+|+|++|.++..   .+...+..+++|++|||++|.|+..    +...
T Consensus         3 ~l~~ld~~~----~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~   78 (460)
T d1z7xw1           3 DIQSLDIQC----EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEES----CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             CCCEEEeeC----CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence            456666665    4444321 22344556666666666665421   1233445566666666666655321    1112


Q ss_pred             cc-CCCCCcEEeccCccCCCC--cchHHhhCCCCCCCEEEcCCCCCC
Q 042537          120 LG-NLSRLKYLDLSYINLNKS--RDWLRIIDKLPSLRTLNLEHCHLP  163 (789)
Q Consensus       120 ~~-~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~  163 (789)
                      +. ...+|++|+|++|+++..  ..++..+..+++|++|++++|.+.
T Consensus        79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            21 223566666666665532  223445555666666666666543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.1e-18  Score=168.68  Aligned_cols=78  Identities=17%  Similarity=0.037  Sum_probs=47.0

Q ss_pred             eEEEcccCccccccchhhhccccCcE-EEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccC
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVA-LNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY  705 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  705 (789)
                      +.|++++|+++...+..+ ...++++ +++++|+++...+..|.++++|++|+|++|+|+...+..|.+++.|+++++.+
T Consensus       156 ~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         156 VILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             EEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             eeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            566666666664333333 3344433 34566677644444567777777777777777755555666666666666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=2.7e-18  Score=161.95  Aligned_cols=177  Identities=21%  Similarity=0.216  Sum_probs=126.3

Q ss_pred             CcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccC-CCCccCCCcCceEeccCCcccccCCccccccccCcccCC
Q 042537          504 LILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNI-PFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSS  582 (789)
Q Consensus       504 L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  582 (789)
                      .++++.++++++ .+|..+.   +++++|+|++|+|++.+ +..|.++++|+.|++++|++.+..+..|..++.|     
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L-----   80 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI-----   80 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC-----
T ss_pred             CCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc-----
Confidence            356778888887 7777653   57888888888887533 5566778888888888888887777776665555     


Q ss_pred             CccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCccee
Q 042537          583 SNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTG  662 (789)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  662 (789)
                                                                  +.|+|++|+|++..|..|.++++|++|+|++|+|++
T Consensus        81 --------------------------------------------~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~  116 (192)
T d1w8aa_          81 --------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             --------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             --------------------------------------------ceeeeccccccccCHHHHhCCCcccccccCCccccc
Confidence                                                        788888888887777778888888888888888887


Q ss_pred             ecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCcccccCCCCCccccccccccCCCCCCCCCC
Q 042537          663 QITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGKIPLGTQLQSFNASVYAGNPELCGLP  736 (789)
Q Consensus       663 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  736 (789)
                      ..|..|..+++|++|+|++|.+....+... -...++.+.+..|.+.+..|..  ++......+..|...|..+
T Consensus       117 i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~--l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             ECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred             cCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCChh--hcCCEeeecCHhhCcCCCC
Confidence            777788888888888888888875433211 1123556677778887777743  3333444456666666544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=8.5e-18  Score=165.50  Aligned_cols=154  Identities=19%  Similarity=0.147  Sum_probs=80.1

Q ss_pred             cEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCccc-CCccccccCcccEEEcc
Q 042537          408 SVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGK-IPKSMGFLHSIQTLSLY  486 (789)
Q Consensus       408 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~  486 (789)
                      +.++.++..++..++...    +++++|++++|+++...+.+|.++++|++|++++|.+... .+.+|..++.++++.+.
T Consensus        11 ~~i~c~~~~l~~iP~~l~----~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC----SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCCcCCCCC----CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            345555555554333221    3566666666666544444566666666666666655432 23345556666666554


Q ss_pred             C-CeeeeeCCcCccCCCCCcEEeCCCCcccccCch-hhhhcCCCCcEEEcCCCcccccCCCCccCCC-cCceEeccCCcc
Q 042537          487 N-NSLIGELPSFFKSCSQLILMDLGKNGLSGEIPT-WIGEGLPKLVVLSLKSNKFHGNIPFQVCQLS-YIQILDLSLNNI  563 (789)
Q Consensus       487 ~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l  563 (789)
                      . |.+....+..|.++++|+++++++|++. ..+. .....+..+..+..+++.+....+..+.+++ .++.|++++|++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccccccccccccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            2 4555555555666666666666666655 2322 2222334444445555555544444444443 455566666655


Q ss_pred             ccc
Q 042537          564 SGI  566 (789)
Q Consensus       564 ~~~  566 (789)
                      +..
T Consensus       166 ~~i  168 (242)
T d1xwdc1         166 QEI  168 (242)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=1.8e-17  Score=156.19  Aligned_cols=174  Identities=21%  Similarity=0.212  Sum_probs=134.2

Q ss_pred             CCEEEccCCcccccCCCCCCCCcEEEcCCCcCccccchhcccCCCCCCEEEcCCCccccCCCcccccCCCCcEEEcCCCc
Q 042537          386 SSSIDISSNYFEGLIPPLPSNASVLNLSRNKFSESISFLCSINGHKLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNF  465 (789)
Q Consensus       386 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  465 (789)
                      .+.++++++.++.++...++++++|++++|+|++.++...+..+++|+.|++++|.+....+..|..+++|++|++++|+
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            34677777777766555677888888888888776655555455889999999999988888889999999999999999


Q ss_pred             CcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCC
Q 042537          466 FSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPF  545 (789)
Q Consensus       466 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~  545 (789)
                      ++...+.+|.++++|++|+|++|+|+++.+..|..+++|++|++++|.+....+...+  ...++.+.+..+.++...|.
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBCSST
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeCCCh
Confidence            9988888899999999999999999988888899999999999999988743332222  23456666777777766665


Q ss_pred             CccCCCcCceEeccCCccc
Q 042537          546 QVCQLSYIQILDLSLNNIS  564 (789)
Q Consensus       546 ~~~~l~~L~~L~Ls~N~l~  564 (789)
                      .   +..++.++++.|.+.
T Consensus       168 ~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         168 K---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             T---TTTSBGGGSCTTTCC
T ss_pred             h---hcCCEeeecCHhhCc
Confidence            4   445666778887765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.7e-16  Score=151.66  Aligned_cols=165  Identities=25%  Similarity=0.310  Sum_probs=102.0

Q ss_pred             cCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceE
Q 042537          477 LHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQIL  556 (789)
Q Consensus       477 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  556 (789)
                      +.+|++|++++|.++...  .+..+++|++|++++|+++ .++. +. .+++|++|++++|++++ ++ .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~-~l~~-~~-~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCcccc-Cccc-cc-cCccccccccccccccc-cc-ccccccccccc
Confidence            345555555555554321  2455556666666666655 3432 22 45666666666666653 22 35566666666


Q ss_pred             eccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCcc
Q 042537          557 DLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKL  636 (789)
Q Consensus       557 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  636 (789)
                      ++++|.+...  ..+..+                                                 +.++.+++++|.+
T Consensus       118 ~l~~~~~~~~--~~l~~l-------------------------------------------------~~l~~l~~~~n~l  146 (210)
T d1h6ta2         118 SLEHNGISDI--NGLVHL-------------------------------------------------PQLESLYLGNNKI  146 (210)
T ss_dssp             ECTTSCCCCC--GGGGGC-------------------------------------------------TTCCEEECCSSCC
T ss_pred             cccccccccc--cccccc-------------------------------------------------ccccccccccccc
Confidence            6666665421  122222                                                 2336777777777


Q ss_pred             ccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccC
Q 042537          637 SGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY  705 (789)
Q Consensus       637 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  705 (789)
                      ++  +..+..+++|+++++++|++++ ++ .+.++++|+.|+|++|+++. +| .+..+++|++|++++
T Consensus       147 ~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         147 TD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            63  2346677888888888888875 33 37888888888888888874 44 578888888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.3e-15  Score=144.03  Aligned_cols=163  Identities=23%  Similarity=0.334  Sum_probs=96.4

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCC
Q 042537           72 LKLYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPS  151 (789)
Q Consensus        72 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  151 (789)
                      ..+.++++|++++|+++.  + +.++.+++|++|++++|++++..|  ++++++|++|++++|.+..+    ..++++++
T Consensus        37 ~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~----~~l~~l~~  107 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI----TPLANLTN  107 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTT
T ss_pred             HHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc----cccccccc
Confidence            345566666666666653  2 235556666666666666664322  66666666666666665553    23556666


Q ss_pred             CCEEEcCCCCCCCCccccccccccCCCCCCeEEccCCCCCCCchhHHHhhcCCCcEEEccCCCCcccCchhhhcCCCCcE
Q 042537          152 LRTLNLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLSSSIYPWLFNISSKLVVLDLDSNLLQGSLLEPFDRMVSLRT  231 (789)
Q Consensus       152 L~~L~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  231 (789)
                      |++|++++|.+....+                              +.. .++|+.|++++|++...  +.+..+++|+.
T Consensus       108 L~~L~l~~~~~~~~~~------------------------------~~~-l~~L~~L~l~~n~l~~~--~~l~~~~~L~~  154 (199)
T d2omxa2         108 LTGLTLFNNQITDIDP------------------------------LKN-LTNLNRLELSSNTISDI--SALSGLTSLQQ  154 (199)
T ss_dssp             CSEEECCSSCCCCCGG------------------------------GTT-CTTCSEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             cccccccccccccccc------------------------------cch-hhhhHHhhhhhhhhccc--ccccccccccc
Confidence            6666666655443221                              111 23677777777766532  34667777777


Q ss_pred             EECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCCCCCCccChhhhhcCCCCcEE
Q 042537          232 LYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGNSLTGVVTESVFSELSNLKAL  291 (789)
Q Consensus       232 L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  291 (789)
                      |++.+|++          ++..  .++++++|++|++++|+++ .++.  +..+++|++|
T Consensus       155 L~l~~n~l----------~~l~--~l~~l~~L~~L~ls~N~i~-~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         155 LNFSSNQV----------TDLK--PLANLTTLERLDISSNKVS-DISV--LAKLTNLESL  199 (199)
T ss_dssp             EECCSSCC----------CCCG--GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEE
T ss_pred             cccccccc----------cCCc--cccCCCCCCEEECCCCCCC-CCcc--ccCCCCCCcC
Confidence            77774433          3221  2677778888888888877 4443  6777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=5e-16  Score=148.30  Aligned_cols=163  Identities=23%  Similarity=0.313  Sum_probs=88.1

Q ss_pred             CCCcEEEcCCCcCcccCCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEE
Q 042537          454 DRLAVLSLANNFFSGKIPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLS  533 (789)
Q Consensus       454 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~  533 (789)
                      .+|+.|++++|.++.. + .+..+++|++|++++|++++..  .+..+++|++|++++|+++ .+|. +. .+++|+.|+
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~~-l~-~l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLSS-LK-DLKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGGG-GT-TCTTCCEEE
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-cccc-cc-ccccccccc
Confidence            3444555555554422 1 2444555555555555554322  2344555555555555555 3442 22 455566666


Q ss_pred             cCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEee
Q 042537          534 LKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWK  613 (789)
Q Consensus       534 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  613 (789)
                      +++|.+..  ...+..++.++.+++++|.+++.  ..+..+                                       
T Consensus       119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l---------------------------------------  155 (210)
T d1h6ta2         119 LEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRL---------------------------------------  155 (210)
T ss_dssp             CTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGC---------------------------------------
T ss_pred             cccccccc--ccccccccccccccccccccccc--cccccc---------------------------------------
Confidence            66655542  12355556666666666655422  112222                                       


Q ss_pred             ccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCC
Q 042537          614 GSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLS  680 (789)
Q Consensus       614 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  680 (789)
                                +.|+.+++++|++++. + .+.++++|++|+|++|++++ +| .+..+++|+.|+|+
T Consensus       156 ----------~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         156 ----------TKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             ----------TTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             ----------cccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence                      2336677777777643 3 26777777777777777763 44 47777777777775

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=5.9e-16  Score=146.49  Aligned_cols=69  Identities=32%  Similarity=0.484  Sum_probs=43.6

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeE
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVM  701 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  701 (789)
                      +.|++++|++. .++ .+..+++|++|++++|++++. + .++++++|++|++++|+++. ++ .+..+++|++|
T Consensus       131 ~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         131 NRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             SEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             HHhhhhhhhhc-ccc-cccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            56666666655 222 356667777777777777642 2 36677777777777777764 33 46667777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.2e-15  Score=151.14  Aligned_cols=186  Identities=23%  Similarity=0.254  Sum_probs=84.1

Q ss_pred             CCCCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCc-cCCCCcchHHhhCCCCCC
Q 042537           74 LYHLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYI-NLNKSRDWLRIIDKLPSL  152 (789)
Q Consensus        74 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L  152 (789)
                      ..+|++||++++.++...+...+..+++|++|+++++.+++..+..++.+++|++|++++| .++.. .+...+..+++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~-~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc-ccchhhHHHHhc
Confidence            3456666666665543323444555666666666666555444555556666666666654 23321 122333455666


Q ss_pred             CEEEcCCCC-CCCCccccccccccCCCCCCeEEccCC--CCCCCchhHHHhhcCCCcEEEccCC-CCcccCchhhhcCCC
Q 042537          153 RTLNLEHCH-LPPIIPSDLLHLNFSTSSLGALYLFEN--SLSSSIYPWLFNISSKLVVLDLDSN-LLQGSLLEPFDRMVS  228 (789)
Q Consensus       153 ~~L~L~~n~-l~~~~~~~~~~~~l~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~  228 (789)
                      ++|++++|. ++............  +.|+.|+++++  .++......+....++|++|++++| .+++.....+.++++
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVS--ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSC--TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             cccccccccccccccchhhhcccc--cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            666666543 22110000000011  45555555543  1222222223333335555555543 244344444555555


Q ss_pred             CcEEECCCCCccEEecCCCcCcccchhhhhCCCCCCEEEccCC
Q 042537          229 LRTLYLGFNELEELFLGKNRLNGTINQWLSRMYKLDALSLSGN  271 (789)
Q Consensus       229 L~~L~L~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  271 (789)
                      |++|++++|         ..+++.....++++++|++|+++++
T Consensus       202 L~~L~L~~C---------~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         202 LQHLSLSRC---------YDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTC---------TTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCEEECCCC---------CCCChHHHHHHhcCCCCCEEeeeCC
Confidence            555555421         1233333334445555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.7e-15  Score=150.49  Aligned_cols=229  Identities=17%  Similarity=0.134  Sum_probs=135.6

Q ss_pred             CCCEEEcCCCccccCCCcccccCCCCcEEEcCCCcCccc-CCccccccCcccEEEccCCeeeeeCCcCccCCCCCcEEeC
Q 042537          431 KLEFLDLSNNILSGRLPDCWMQFDRLAVLSLANNFFSGK-IPKSMGFLHSIQTLSLYNNSLIGELPSFFKSCSQLILMDL  509 (789)
Q Consensus       431 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  509 (789)
                      .+..+.++...+..... ......+|++||+++|.+... ++..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus        24 ~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  102 (284)
T d2astb2          24 GVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  102 (284)
T ss_dssp             TCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccc
Confidence            34566666655542222 233445788888888776643 2344667788888888888776666666777788888888


Q ss_pred             CCC-cccccCchhhhhcCCCCcEEEcCCCc-cccc-CCCCcc-CCCcCceEeccCCc--ccccCCccccccccCcccCCC
Q 042537          510 GKN-GLSGEIPTWIGEGLPKLVVLSLKSNK-FHGN-IPFQVC-QLSYIQILDLSLNN--ISGIIPKCLNNFTGMAQKSSS  583 (789)
Q Consensus       510 s~n-~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~-~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~l~~~  583 (789)
                      ++| .+++..-..+..++++|++|++++|. ++.. ....+. ..++|+.|+++++.  ++..   .+.           
T Consensus       103 s~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~---~l~-----------  168 (284)
T d2astb2         103 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS---DLS-----------  168 (284)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH---HHH-----------
T ss_pred             cccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccc---ccc-----------
Confidence            885 45432222334467888888888763 3321 111122 23577778777642  2211   000           


Q ss_pred             ccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccC-ccccccchhhhccccCcEEEccCC-cce
Q 042537          584 NLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMN-KLSGTIPEEIMDLVGLVALNLSRN-NLT  661 (789)
Q Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N-~l~  661 (789)
                                                        .....+++|+.|++++| .+++.....+..+++|++|+|++| .++
T Consensus       169 ----------------------------------~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         169 ----------------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             ----------------------------------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             ----------------------------------ccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence                                              00122445678888775 466666677777888888888874 576


Q ss_pred             eecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccCCccccc
Q 042537          662 GQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSYNNLSGK  711 (789)
Q Consensus       662 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  711 (789)
                      +.....++++++|+.|+++++--.+.++.....+++|   ++..++++..
T Consensus       215 ~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~  261 (284)
T d2astb2         215 PETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTI  261 (284)
T ss_dssp             GGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCT
T ss_pred             hHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCC
Confidence            6666667777888888888772222233333345554   3455666544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=9.8e-14  Score=118.97  Aligned_cols=103  Identities=26%  Similarity=0.270  Sum_probs=69.4

Q ss_pred             CEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEc
Q 042537           78 RHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNL  157 (789)
Q Consensus        78 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L  157 (789)
                      |+|+|++|+++.  ++ .++.+++|++|++++|+++ .+|.+|+.+++|++|++++|.++.+    ..++++++|++|++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l----~~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV----DGVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC----GGGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc----CccccccccCeEEC
Confidence            578888888873  44 3677888888888888887 4666778888888888888888774    24777888888888


Q ss_pred             CCCCCCCCccccccccccCCCCCCeEEccCCCCC
Q 042537          158 EHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLS  191 (789)
Q Consensus       158 ~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~  191 (789)
                      ++|++...... ..+..+  ++|+.|++++|.++
T Consensus        73 ~~N~i~~~~~~-~~l~~~--~~L~~L~l~~N~i~  103 (124)
T d1dcea3          73 CNNRLQQSAAI-QPLVSC--PRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSCCCSSSTT-GGGGGC--TTCCEEECTTSGGG
T ss_pred             CCCccCCCCCc-hhhcCC--CCCCEEECCCCcCC
Confidence            88877654321 122233  45555555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.4e-14  Score=126.61  Aligned_cols=76  Identities=21%  Similarity=0.207  Sum_probs=43.0

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecC-cccccCCCCCEEeCCCCcccccC---chhhhcCCCCCeEe
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQIT-PKIDQLKSLDFLDLSQNQFVGGI---PSSLCQLSRLSVMN  702 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~  702 (789)
                      +.|++++|+++...+..+..+++|+.|++++|+++.... ..+..+++|++|++++|.++...   +..+..+++|++||
T Consensus        66 ~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          66 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             hhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            455555555553333344556666666666666653211 34566667777777777665332   23466677777766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=7.4e-15  Score=152.28  Aligned_cols=237  Identities=16%  Similarity=0.167  Sum_probs=142.7

Q ss_pred             CCCCEEEcCCCccccC----CCcccccCCCCcEEEcCCCcCccc----------CCccccccCcccEEEccCCeeeee--
Q 042537          430 HKLEFLDLSNNILSGR----LPDCWMQFDRLAVLSLANNFFSGK----------IPKSMGFLHSIQTLSLYNNSLIGE--  493 (789)
Q Consensus       430 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~n~l~~~--  493 (789)
                      ..++.|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++|.+...  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            5566666666665432    223344556666777666543211          112234456777777777776532  


Q ss_pred             --CCcCccCCCCCcEEeCCCCcccccCchhh------------hhcCCCCcEEEcCCCcccccC----CCCccCCCcCce
Q 042537          494 --LPSFFKSCSQLILMDLGKNGLSGEIPTWI------------GEGLPKLVVLSLKSNKFHGNI----PFQVCQLSYIQI  555 (789)
Q Consensus       494 --~~~~~~~l~~L~~L~ls~n~l~~~~p~~~------------~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~  555 (789)
                        +...+..+++|+.|++++|.+.......+            ....+.|+.+++++|++....    ...+...+.|+.
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              12234456777777777776642111111            124567888888888775321    223445677888


Q ss_pred             EeccCCcccccCCccccccccCcccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCc
Q 042537          556 LDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNK  635 (789)
Q Consensus       556 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  635 (789)
                      |++++|.+.......  .+.                                          ......+.|+.|++++|.
T Consensus       191 L~L~~n~i~~~g~~~--~l~------------------------------------------~~l~~~~~L~~L~Ls~N~  226 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEH--LLL------------------------------------------EGLAYCQELKVLDLQDNT  226 (344)
T ss_dssp             EECCSSCCCHHHHHH--HHH------------------------------------------TTGGGCTTCCEEECCSSC
T ss_pred             ccccccccccccccc--chh------------------------------------------hhhcchhhhccccccccc
Confidence            888888765321000  000                                          001234456888999988


Q ss_pred             cccc----cchhhhccccCcEEEccCCcceeecCcc----cc--cCCCCCEEeCCCCccccc----Cchhhh-cCCCCCe
Q 042537          636 LSGT----IPEEIMDLVGLVALNLSRNNLTGQITPK----ID--QLKSLDFLDLSQNQFVGG----IPSSLC-QLSRLSV  700 (789)
Q Consensus       636 l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~--~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~  700 (789)
                      ++..    +...+...++|++|+|++|.|++.....    +.  ..+.|++||+++|+|+..    +...+. +.+.|++
T Consensus       227 i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~  306 (344)
T d2ca6a1         227 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  306 (344)
T ss_dssp             CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCE
Confidence            8643    4456678889999999999987543332    22  246799999999998753    233443 5788999


Q ss_pred             EeccCCcccc
Q 042537          701 MNLSYNNLSG  710 (789)
Q Consensus       701 L~ls~N~l~~  710 (789)
                      |++++|++..
T Consensus       307 L~l~~N~~~~  316 (344)
T d2ca6a1         307 LELNGNRFSE  316 (344)
T ss_dssp             EECTTSBSCT
T ss_pred             EECCCCcCCC
Confidence            9999999863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.7e-13  Score=117.47  Aligned_cols=81  Identities=30%  Similarity=0.390  Sum_probs=54.9

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCc-hhhhcCCCCCeEeccC
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIP-SSLCQLSRLSVMNLSY  705 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~  705 (789)
                      ++||+++|+|+ .+|+.|+.+++|++|++++|+|++ +| .+..+++|+.|++++|+++.... ..+..+++|++|++++
T Consensus        23 ~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          23 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            66777777776 456667777777777777777763 33 46777777777777777764432 4566777777777777


Q ss_pred             Ccccc
Q 042537          706 NNLSG  710 (789)
Q Consensus       706 N~l~~  710 (789)
                      |++++
T Consensus       100 N~i~~  104 (124)
T d1dcea3         100 NSLCQ  104 (124)
T ss_dssp             SGGGG
T ss_pred             CcCCc
Confidence            77764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.1e-13  Score=125.10  Aligned_cols=127  Identities=18%  Similarity=0.170  Sum_probs=82.1

Q ss_pred             ccCCCCCcEEeCCCCcccccCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccC
Q 042537          498 FKSCSQLILMDLGKNGLSGEIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGM  577 (789)
Q Consensus       498 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  577 (789)
                      |.++..+++|++++|+|+ .++.. +..+++|+.|++++|+++.. + .+..+++|++|++++|+++...+..+..++++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~-~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENL-GATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCG-GGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCcc-ccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            445566666777777666 55543 23566777777777777643 2 46667777777777777765554444444443


Q ss_pred             cccCCCccccccCcccccccccccccccceeEEEeeccccccccccCceeEEEcccCccccccc-hhhhccccCcEEEcc
Q 042537          578 AQKSSSNLAITSNYTFERQGIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIP-EEIMDLVGLVALNLS  656 (789)
Q Consensus       578 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls  656 (789)
                                                                       +.|++++|+++.... ..+..+++|++|+++
T Consensus        90 -------------------------------------------------~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~  120 (162)
T d1a9na_          90 -------------------------------------------------TELILTNNSLVELGDLDPLASLKSLTYLCIL  120 (162)
T ss_dssp             -------------------------------------------------CEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred             -------------------------------------------------ccceeccccccccccccccccccccchhhcC
Confidence                                                             777777777763211 356778888888888


Q ss_pred             CCcceeecCc----ccccCCCCCEEe
Q 042537          657 RNNLTGQITP----KIDQLKSLDFLD  678 (789)
Q Consensus       657 ~N~l~~~~p~----~~~~l~~L~~L~  678 (789)
                      +|+++. .|.    .+..+++|+.||
T Consensus       121 ~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         121 RNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             CCcccc-ccchHHHHHHHCCCcCeeC
Confidence            888863 332    467788888877

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=1.6e-13  Score=142.01  Aligned_cols=96  Identities=20%  Similarity=0.183  Sum_probs=58.2

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCC---CCcccccCCCCCCEEecCCCcCCCC----------CCccccCCCCCcEEeccC
Q 042537           67 ISPSLLKLYHLRHLDLSENDFSGS---RIPEFIGSLNKLRYLSLSSAEFEGP----------IPSQLGNLSRLKYLDLSY  133 (789)
Q Consensus        67 l~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~Ls~n~i~~~----------~p~~~~~l~~L~~L~Ls~  133 (789)
                      +..++.....|+.|+|++|.+...   .+...+...++|+.|+++++.....          +..++...++|++|+|++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            344566778888888888877532   1233456677888888877654321          112244566677777777


Q ss_pred             ccCCCC--cchHHhhCCCCCCCEEEcCCCCC
Q 042537          134 INLNKS--RDWLRIIDKLPSLRTLNLEHCHL  162 (789)
Q Consensus       134 n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l  162 (789)
                      |.+...  ..+...+..+++|++|++++|.+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             cccccccccchhhhhcccccchheecccccc
Confidence            766542  22444555566677777776655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=1.6e-13  Score=128.70  Aligned_cols=131  Identities=23%  Similarity=0.268  Sum_probs=93.6

Q ss_pred             cCchhhhhcCCCCcEEEcCCCcccccCCCCccCCCcCceEeccCCcccccCCccccccccCcccCCCccccccCcccccc
Q 042537          517 EIPTWIGEGLPKLVVLSLKSNKFHGNIPFQVCQLSYIQILDLSLNNISGIIPKCLNNFTGMAQKSSSNLAITSNYTFERQ  596 (789)
Q Consensus       517 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~  596 (789)
                      .+|..+. .+++|++|+|++|+|+. ++ .+..+++|++|++++|.++.. |..+..+                      
T Consensus        39 ~l~~sl~-~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~----------------------   92 (198)
T d1m9la_          39 KMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDAVA----------------------   92 (198)
T ss_dssp             CCHHHHH-HTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSC-SSHHHHH----------------------
T ss_pred             hhhhHHh-cccccceeECcccCCCC-cc-cccCCccccChhhcccccccc-ccccccc----------------------
Confidence            5555555 68888888888888874 33 477888888888888887633 3222222                      


Q ss_pred             cccccccccceeEEEeeccccccccccCceeEEEcccCccccccchhhhccccCcEEEccCCcceeecC-cccccCCCCC
Q 042537          597 GIEFLESYVDNVVLTWKGSQHEYRSTLGLVKILDFSMNKLSGTIPEEIMDLVGLVALNLSRNNLTGQIT-PKIDQLKSLD  675 (789)
Q Consensus       597 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~  675 (789)
                                                 +.|+.|++++|+++. + +.+..+++|+.|++++|+++.... ..+..+++|+
T Consensus        93 ---------------------------~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~  143 (198)
T d1m9la_          93 ---------------------------DTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE  143 (198)
T ss_dssp             ---------------------------HHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred             ---------------------------ccccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccc
Confidence                                       234888888888874 3 347888889999999998874322 4578888999


Q ss_pred             EEeCCCCcccccCchh----------hhcCCCCCeEe
Q 042537          676 FLDLSQNQFVGGIPSS----------LCQLSRLSVMN  702 (789)
Q Consensus       676 ~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  702 (789)
                      .|+|++|++....+..          +..+++|+.||
T Consensus       144 ~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             eeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999999886544432          56788888886

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.2e-12  Score=114.38  Aligned_cols=108  Identities=21%  Similarity=0.226  Sum_probs=72.2

Q ss_pred             eEEEcccCccccccchhhhccccCcEEEccCC-cceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEeccC
Q 042537          627 KILDFSMNKLSGTIPEEIMDLVGLVALNLSRN-NLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNLSY  705 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  705 (789)
                      +.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+.+.|..|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            45677777766 55666777777777777655 36655556677777777777777777776677777777777777777


Q ss_pred             CcccccCCCC-CccccccccccCCCCCCCCCC
Q 042537          706 NNLSGKIPLG-TQLQSFNASVYAGNPELCGLP  736 (789)
Q Consensus       706 N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  736 (789)
                      |+++ .+|.+ .....+....+.|||+.|+|.
T Consensus        90 N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          90 NALE-SLSWKTVQGLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             SCCS-CCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCCc-ccChhhhccccccccccCCCcccCCch
Confidence            7776 34433 222234555667777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.5e-11  Score=110.02  Aligned_cols=87  Identities=20%  Similarity=0.075  Sum_probs=72.7

Q ss_pred             ceeEEEcccC-ccccccchhhhccccCcEEEccCCcceeecCcccccCCCCCEEeCCCCcccccCchhhhcCCCCCeEec
Q 042537          625 LVKILDFSMN-KLSGTIPEEIMDLVGLVALNLSRNNLTGQITPKIDQLKSLDFLDLSQNQFVGGIPSSLCQLSRLSVMNL  703 (789)
Q Consensus       625 ~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  703 (789)
                      ++++|++++| .++...+..|.++++|+.|+|++|+|++..|..|..+++|++|+|++|+|+...+..|..+ +|+.|+|
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L  110 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVL  110 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEEC
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-ccccccc
Confidence            3478888765 4776667789999999999999999998888889999999999999999996666666544 7999999


Q ss_pred             cCCcccccC
Q 042537          704 SYNNLSGKI  712 (789)
Q Consensus       704 s~N~l~~~~  712 (789)
                      ++|++.+.+
T Consensus       111 ~~Np~~C~C  119 (156)
T d2ifga3         111 SGNPLHCSC  119 (156)
T ss_dssp             CSSCCCCCG
T ss_pred             CCCcccCCc
Confidence            999997654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=3.1e-13  Score=126.61  Aligned_cols=57  Identities=25%  Similarity=0.256  Sum_probs=36.6

Q ss_pred             eEEEcccCccccccc-hhhhccccCcEEEccCCcceeecCcc----------cccCCCCCEEeCCCCccc
Q 042537          627 KILDFSMNKLSGTIP-EEIMDLVGLVALNLSRNNLTGQITPK----------IDQLKSLDFLDLSQNQFV  685 (789)
Q Consensus       627 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~L~Ls~N~l~  685 (789)
                      +.|++++|+++.... ..+..+++|+.|+|++|+++...+..          +..+++|+.||  +..++
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            666777776663221 35677778888888888776543332          56678888887  44444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4.4e-09  Score=94.25  Aligned_cols=106  Identities=27%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             CCCEEeCCCCCCCCCCCcccccCCCCCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEE
Q 042537           76 HLRHLDLSENDFSGSRIPEFIGSLNKLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTL  155 (789)
Q Consensus        76 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L  155 (789)
                      ..+.||+++....     ..+..+..+..++..++... .++..+.++++|++|+|++|+++.+..++..+..+++|+.|
T Consensus        23 ~~~~Ldls~l~~~-----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L   96 (162)
T d1koha1          23 SQQALDLKGLRSD-----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL   96 (162)
T ss_dssp             SSCCBCCCCCSSC-----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCC
T ss_pred             hhCeeecccCCCC-----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccc
Confidence            3455666554322     12333444444444444333 33444456677777777777777665555666667777777


Q ss_pred             EcCCCCCCCCccccccccccCCCCCCeEEccCCCCC
Q 042537          156 NLEHCHLPPIIPSDLLHLNFSTSSLGALYLFENSLS  191 (789)
Q Consensus       156 ~L~~n~l~~~~~~~~~~~~l~~~~L~~L~l~~n~l~  191 (789)
                      ++++|.+....+  ......  ..|+.+++++|.+.
T Consensus        97 ~Ls~N~i~~l~~--l~~l~~--~~L~~L~L~~Npl~  128 (162)
T d1koha1          97 NLSGNELKSERE--LDKIKG--LKLEELWLDGNSLS  128 (162)
T ss_dssp             CCTTSCCCCGGG--HHHHTT--CCCSSCCCTTSTTS
T ss_pred             ccccCccccchh--hhhhhc--cccceeecCCCCcC
Confidence            777777665433  222222  44555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.4e-07  Score=84.16  Aligned_cols=59  Identities=19%  Similarity=0.107  Sum_probs=35.8

Q ss_pred             CCCEEecCCCcCCCCCCccccCCCCCcEEeccCccCCCCcchHHhhCCCCCCCEEEcCCCCCCCCc
Q 042537          101 KLRYLSLSSAEFEGPIPSQLGNLSRLKYLDLSYINLNKSRDWLRIIDKLPSLRTLNLEHCHLPPII  166 (789)
Q Consensus       101 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  166 (789)
                      ..+.|++++....    ..+..+..+..++...+....   ++..+.++++|++|+|++|+|+...
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~~---l~~~~~~~~~L~~L~Ls~N~i~~l~   81 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAAT---LRIIEENIPELLSLNLSNNRLYRLD   81 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHHH---HHHHHHHCTTCCCCCCCSSCCCCCS
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHhhh---hHHHHHhCCCCCEeeCCCccccCCc
Confidence            4566777765432    234455555555555554333   3344567888888888888887643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.61  E-value=2.2e-05  Score=69.78  Aligned_cols=82  Identities=15%  Similarity=0.105  Sum_probs=46.5

Q ss_pred             eEEEcccCcccc----ccchhhhccccCcEEEccCCcceee----cCcccccCCCCCEEeCCCCccccc-------Cchh
Q 042537          627 KILDFSMNKLSG----TIPEEIMDLVGLVALNLSRNNLTGQ----ITPKIDQLKSLDFLDLSQNQFVGG-------IPSS  691 (789)
Q Consensus       627 ~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-------~p~~  691 (789)
                      +.|++++|.+..    .+.+.+...+.|++|+|++|.++..    +-..+...++|++|++++|.+...       +...
T Consensus        47 ~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~  126 (167)
T d1pgva_          47 EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA  126 (167)
T ss_dssp             CEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH
T ss_pred             ceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHH
Confidence            455555555442    1223344556677777777766643    222345556777777777765432       3344


Q ss_pred             hhcCCCCCeEeccCCcc
Q 042537          692 LCQLSRLSVMNLSYNNL  708 (789)
Q Consensus       692 l~~l~~L~~L~ls~N~l  708 (789)
                      +...++|+.|+++++..
T Consensus       127 L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         127 IEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHCSSCCEEECCCCCH
T ss_pred             HHhCCCccEeeCcCCCc
Confidence            55567777777776543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.53  E-value=3.8e-05  Score=68.17  Aligned_cols=19  Identities=16%  Similarity=-0.083  Sum_probs=11.5

Q ss_pred             hhhhhCCCCCCEEEccCCC
Q 042537          254 NQWLSRMYKLDALSLSGNS  272 (789)
Q Consensus       254 ~~~l~~l~~L~~L~L~~n~  272 (789)
                      ...+...+.|+.|+++.+.
T Consensus       124 ~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         124 MMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCCccEeeCcCCC
Confidence            3445556677777776553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.96  E-value=0.00066  Score=59.83  Aligned_cols=21  Identities=0%  Similarity=0.020  Sum_probs=10.9

Q ss_pred             HHhhCCCCCCCEEEcCCCCCC
Q 042537          143 LRIIDKLPSLRTLNLEHCHLP  163 (789)
Q Consensus       143 ~~~l~~l~~L~~L~L~~n~l~  163 (789)
                      ...+...++|++|++++|.+.
T Consensus        39 ~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          39 AEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             HHHHTTCCSCCEEECTTSCCC
T ss_pred             HHHHhcCCccCeeeccCCccc
Confidence            344445555555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.66  E-value=0.00029  Score=62.25  Aligned_cols=42  Identities=10%  Similarity=0.090  Sum_probs=19.2

Q ss_pred             cCCCCCCEEeCCC-CCCCCCC---CcccccCCCCCCEEecCCCcCC
Q 042537           72 LKLYHLRHLDLSE-NDFSGSR---IPEFIGSLNKLRYLSLSSAEFE  113 (789)
Q Consensus        72 ~~l~~L~~L~Ls~-n~i~~~~---~~~~~~~l~~L~~L~Ls~n~i~  113 (789)
                      .+.+.|++|++++ +.++...   +-.++...++|++|++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            3445666666665 3343211   1122334455555555555443