Citrus Sinensis ID: 042571

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930------
MRSSATSYQSMLLQRKLRNTLSFTKLIRLLTVAILMAECLKLPVRQIMDVRGAIMLQLALRQQPVTIFLIRCVNMKFIHYLLLAQKSGGSIEIFWGSYNIVCKMLFDHCMQVMWNAVFGDRVAEYSSAWRKRKLWSGHPKITGPASDYKDDRKRMEQAPSRHDSSVSDDDCPPGFGMVEIRTENDVQPYHLSLSVPVGENLSKQKNLSCNDHLLLDDVKCILDGVENELYLSTKATYTEYVEILVEDEVRKVVSASKGINMKEDVVDPSSHDLHTCQCGFADVNGGMRIDSNETSAEIFSSEDSKSLFQAGKPLSKDLLSNILACAFKRSFSGFVDNVVDELETDEPSPPGFEDSVRKLVPSCNGKFQFSWSDEFTTKMGEYVAIAMCRQKLHAIVVGEWKSLFVDDALQQFLALWCNMKECCEADGNEKAEGASNAHNEHHGDTSTVVDKLKEGSKRFHSSEASTMVEKYTYHRKKKLLRKKFGSPSNCSNSVENAFQTEHVEKSRKQGVAGDVFENAKVQPSAVSSKKIGKNKLIDASSKKIGANKFTSVPSKMIGKNKVTAESSASAGSSKVKSKLPSGYSSAKSTISQKVMKVTSAVQRDKVPVPKPSGEMLSTLSADGNDVGKVVRGKAHNVGIEKDSILDSSKSKPNATKESKQKRKRTMDGLELHATKALKVAKGTAKQAASRQVAMKKTKASKSRTSNLCPRSDGCARSSISGWEWHKWSLNASPAERARVRGAQYVHTKYLGPEVNASQWANGKGLSARTNRVKLRNLLAAAEGAELLKASQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCYCGSKKCHGSLN
ccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccEEEEEccccccEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEccccEEEccccccHHHHccccccccccEEEEEEccEEEEEEEEcccccccccEEEccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccEEEEEEEHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHccccEEcccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHcHHHHHHHHHHHHcHccccccccccccccccccccccHHHcccccccHccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccHHcccccccccccHHHcccccccccccccEcccccccccccccEEccccHcccccHHcccccccccccccccHHHHcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHccccccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHHHHHHHHEccccHHccccEEEccccccccEEEEEccEEEcHHHHHHHHHHHHHcccccEEEEEEcccEEEEcccccccEEEEEcccccccEEEEEEEccccEEEEEEccccccccEEEEEcccccccccccccccccHcccccc
MRSSATSYQSMLLQRKLRNTLSFTKLIRLLTVAILMAECLKLPVRQIMDVRGAIMLQLALRQQPVTIFLIRCVNMKFIHYLLLAQksggsieiFWGSYNIVCKMLFDHCMQVMWNAVFGDRVAEYSSAWRKrklwsghpkitgpasdykddrkrmeqapsrhdssvsdddcppgfgmveirtendvqpyhlslsvpvgenlskqknlscndhlllDDVKCILDGVENELYLSTKATYTEYVEILVEDEVRKVVSaskginmkedvvdpsshdlhtcqcgfadvnggmridsnetsaeifssedskslfqagkplsKDLLSNILACAfkrsfsgfvdnvvdeletdepsppgfedsvrklvpscngkfqfswsdEFTTKMGEYVAIAMCRQKLHAIVVGEWKSLFVDDALQQFLALWCNMKECceadgnekaegasnahnehhgdtstVVDKLkegskrfhsseASTMVEKYTYHRKKKLLrkkfgspsncsnsveNAFQTEHVEKsrkqgvagdvfenakvqpsavsskkigknklidasskkigankftsvpskmigknkvtaessasagsskvksklpsgyssakstISQKVMKVTSAvqrdkvpvpkpsgemlstlsadgndvgkvvrgkahnvgiekdsildsskskpnatkeskQKRKRTMDGLELHATKALKVAKGTAKQAASRQVAMKKTkasksrtsnlcprsdgcarssisgwewhkwslnaspaeraRVRGAQYVhtkylgpevnasqwangkglsarTNRVKLRNLLAAAEGAELLKASQVKARKKRLRFQRskihdwglvalepieaeDFVIEYVGELIRLKISDIRECryekmgigssylfrlddgyvvdatkrggiarfinhscnpncytkVISVEGQKKIFIYAKRHIAageeitynykfpleekkipcycgskkchgsln
mrssatsyQSMLLQRKLRNTLSFTKLIRLLTVAILMAECLKLPVRQIMDVRGAIMLQLALRQQPVTIFLIRCVNMKFIHYLLLAQKSGGSIEIFWGSYNIVCKMLFDHCMQVMWNAVFGDRVAEYSSAWrkrklwsghpkitgpasdykddRKRMEQapsrhdssvsdddcPPGFGMVEIRTENDVQPYHLSLSVPVGENLSKQKNLSCNDHLLLDDVKCILDGVENELYLSTKATYTEYVEILVEDEVRKVVSASKGINMKEDVVDPSSHDLHTCQCGFADVNGGMRIDSNETSAEIFSSEDSKSLFQAGKPLSKDLLSNILACAFKRSFSGFVDNVVDELETDEPSPPGFEDSVRKLVPSCNGKFQFSWSDEFTTKMGEYVAIAMCRQKLHAIVVGEWKSLFVDDALQQFLALWCNMKECCEADGNEKAEGasnahnehhgdtstvvdKLKEGSkrfhsseastmvekYTYHRKKKLLRkkfgspsncsnSVENAFQTEHVEKSrkqgvagdvfenakvqpsavsskkigknklidasskkigankftsvpskmigknkvtaessasagsskvksklpsgyssakstisqkvmkvtsavqrdkvpvpkpsgemlstlsadgndvgKVVRGKahnvgiekdsildsskskpnatkeskqkrkrtmdgLELHATKALKVAKGTAKQAASRQVamkktkasksrtsnlcprsdgCARSSISGWEWHKWSLNASPAERARVRGAQYVHTKylgpevnasqwangkglsarTNRVKLRNLLAAaegaellkasqvkarkkrlrfqrskihdwglvalepieaEDFVIEYVGELIRLKISDIRECRYEKmgigssylfrldDGYVVDATKRGGIarfinhscnpnCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEkkipcycgskkchgsln
MRSSATSYQSMLLQRKLRNTLSFTKLIRLLTVAILMAECLKLPVRQIMDVRGAIMLQLALRQQPVTIFLIRCVNMKFIHYLLLAQKSGGSIEIFWGSYNIVCKMLFDHCMQVMWNAVFGDRVAEYSSAWRKRKLWSGHPKITGPASDYKDDRKRMEQAPSRHDSSVSDDDCPPGFGMVEIRTENDVQPYHLSLSVPVGENLSKQKNLSCNDHLLLDDVKCILDGVENELYLSTKATYTEYVEILVEDEVRKVVSASKGINMKEDVVDPSSHDLHTCQCGFADVNGGMRIDSNETSAEIFSSEDSKSLFQAGKPLSKDLLSNILACAFKRSFSGFVDNVVDELETDEPSPPGFEDSVRKLVPSCNGKFQFSWSDEFTTKMGEYVAIAMCRQKLHAIVVGEWKSLFVDDALQQFLALWCNMKECCEADGNEKAEGASNAHNEHHGDTSTVVDKLKEGSKRFHSSEASTMVEKYTYHRKKKLLRKKFGSPSNCSNSVENAFQTEHVEKSRKQGVAGDVFENAKVQPSAVSSKKIGKNKLIDASSKKIGANKFTSVPSKMIGKNKVTaessasagsskvkskLPSGYSSAKSTISQKVMKVTSAVQRDKVPVPKPSGEMLSTLSADGNDVGKVVRGKAHNVGIEKDSILDSSKSKPNATKESKQKRKRTMDGLELHATKALKVAKGTAKQAASRQVAMKKTKASKSRTSNLCPRSDGCARSSISGWEWHKWSLNASPAERARVRGAQYVHTKYLGPEVNASQWANGKGLSARTNRVKlrnllaaaegaellkaSQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCYCGSKKCHGSLN
***********LLQRKLRNTLSFTKLIRLLTVAILMAECLKLPVRQIMDVRGAIMLQLALRQQPVTIFLIRCVNMKFIHYLLLAQKSGGSIEIFWGSYNIVCKMLFDHCMQVMWNAVFGDRVAEYSSAWRKRKLWS****************************************MVEIRTENDVQPYHLSLSVPVGENLSKQKNLSCNDHLLLDDVKCILDGVENELYLSTKATYTEYVEILVEDEVRKVVSASKGINMK*DVV****HDLHTCQCGFADVNGGM****************************KDLLSNILACAFKRSFSGFVDNVVD*****************KLVPSCNGKFQFSWSDEFTTKMGEYVAIAMCRQKLHAIVVGEWKSLFVDDALQQFLALWCNMKECCE****************************************************************************************************************************************************************************************************************************************************************************************************SSISGWEWHKWSLNASPAERARVRGAQYVHTKYLGPEVNASQWANGKGLSARTNRVKLRNLLAAAEGAELLKASQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCYCGSK*******
***********LLQRKLRNTLSFTKLIRLLTVAILMAECLKLPVRQIMDVRGAIMLQLALRQQPVTIFLIRCVNMKFIHYLLLAQKSGGSIEIFWGSYNIVCKMLFDHCMQVMWNAVFGDRVAEYSSAWRKRKLW*********************************************************************************DVKCILDGVENELYLSTKATYTEYVEILVEDEVRKVVSASKGI*****************************************************************CAFKRSFSGFV********************************************GEYVAI**************WKSLFVDDALQQFL********************************************************************************************************************************************************************************************************************************************************************TKALKVAKGTAKQA**************************CARSSISGWEWHKWS************************************************************ASQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCYCGSKKCHGSLN
**********MLLQRKLRNTLSFTKLIRLLTVAILMAECLKLPVRQIMDVRGAIMLQLALRQQPVTIFLIRCVNMKFIHYLLLAQKSGGSIEIFWGSYNIVCKMLFDHCMQVMWNAVFGDRVAEYSSAWRKRKLWSGHPKITGPAS***********************DCPPGFGMVEIRTENDVQPYHLSLSVPVGENLSKQKNLSCNDHLLLDDVKCILDGVENELYLSTKATYTEYVEILVEDEVRKVVSASKGINMKEDVVDPSSHDLHTCQCGFADVNGGMRIDSNETSAEIFSSEDSKSLFQAGKPLSKDLLSNILACAFKRSFSGFVDNVVDE**********FEDSVRKLVPSCNGKFQFSWSDEFTTKMGEYVAIAMCRQKLHAIVVGEWKSLFVDDALQQFLALWCNMKECCEADGN*******************VVDKLKEGSKRFHSSEASTMVEKYTYHRKKKLLRKKFGSPSNCSNSVENAFQ**********GVAGDVFENAKVQPSAVSSKKIGKNKLIDASSKKIGANKFTSVPSKMIGK****************************************AVQRDKVPVPKPSGEMLSTLSADGNDVGKVVRGKAHNVGIEKD***********************MDGLELHATKALK*************************************RSSISGWEWHKWSLNASPAERARVRGAQYVHTKYLGPEVNASQWANGKGLSARTNRVKLRNLLAAAEGAELLKASQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCYCGSKKCHGSLN
******SYQSMLLQRKLRNTLSFTKLIRLLTVAILMAECLKLPVRQIMDVRGAIMLQLALRQQPVTIFLIRCVNMKFIHYLLLAQKSGGSIEIFWGSYNIVCKMLFDHCMQVMWNAVFGDRVAEYSSAWRKRKLWSGHPK***************************DDDCPPGFGMVEIR***************************CNDHLLLDDVKCILDGVENELYLSTKATYTEYVEILVEDEVRKVVSASKGINMKEDVVDPSSHDLHTCQCGFADVNGGMRIDSNETSAEIFSSEDSKSLFQAGKPLSKDLLSNILACAFKRSFSGFVDNVVDELETDEPSPPGFEDSVRKLVPSCNGKFQFSWSDEFTTKMGEYVAIAMCRQKLHAIVVGEWKSLFVDDALQQFLALWCNMKECCE***************************************ASTMVEKYTYHRKKKLLRKK*********************************************************************************************************************************GEMLST**ADGNDVGKVVRGKAHNVGIEKDSILDS******ATKES****KRTMDGLELHATKALKVAKGTAKQAASRQVAMKKTKASKSRTSNLCPRSDGCARSSISGWEWHKWSLNASPAERARVRGAQYVHTKYLGPE*N*******************RNLLAAAEGAELLKASQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCYCGSKKC*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRSSATSYQSMLLQRKLRNTLSFTKLIRLLTVAILMAECLKLPVRQIMDVRGAIMLQLALRQQPVTIFLIRCVNMKFIHYLLLAQKSGGSIEIFWGSYNIVCKMLFDHCMQVMWNAVFGDRVAEYSSAWRKRKLWSGHPKITGPASDYKDDRKRMEQAPSRHDSSVSDDDCPPGFGMVEIRTENDVQPYHLSLSVPVGENLSKQKNLSCNDHLLLDDVKCILDGVENELYLSTKATYTEYVEILVEDEVRKVVSASKGINMKEDVVDPSSHDLHTCQCGFADVNGGMRIDSNETSAEIFSSEDSKSLFQAGKPLSKDLLSNILACAFKRSFSGFVDNVVDELETDEPSPPGFEDSVRKLVPSCNGKFQFSWSDEFTTKMGEYVAIAMCRQKLHAIVVGEWKSLFVDDALQQFLALWCNMKECCEADGNEKAEGASNAHNEHHGDTSTVVDKLKEGSKRFHSSEASTMVEKYTYHRKKKLLRKKFGSPSNCSNSVENAFQTEHVEKSRKQGVAGDVFENAKVQPSAVSSKKIGKNKLIDASSKKIGANKFTSVPSKMIGKNKVTAESSASAGSSKVKSKLPSGYSSAKSTISQKVMKVTSAVQRDKVPVPKPSGEMLSTLSADGNDVGKVVRGKAHNVGIEKDSILDSSKSKPNATKESKQKRKRTMDGLELHATKALKVAKGTAKQAASRQVAMKKTKASKSRTSNLCPRSDGCARSSISGWEWHKWSLNASPAERARVRGAQYVHTKYLGPEVNASQWANGKGLSARTNRVKLRNLLAAAEGAELLKASQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCYCGSKKCHGSLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query936 2.2.26 [Sep-21-2011]
Q08D571956 Histone-lysine N-methyltr yes no 0.196 0.094 0.571 6e-58
Q66J901938 Histone-lysine N-methyltr N/A no 0.196 0.094 0.560 1e-57
Q1LY771844 Histone-lysine N-methyltr no no 0.177 0.090 0.604 3e-57
O150471707 Histone-lysine N-methyltr yes no 0.179 0.098 0.581 3e-56
Q54HS31486 Histone-lysine N-methyltr yes no 0.177 0.111 0.567 7e-55
Q5F3P82008 Histone-lysine N-methyltr yes no 0.196 0.091 0.576 8e-54
Q9UPS61923 Histone-lysine N-methyltr no no 0.193 0.094 0.580 2e-53
Q8CFT21985 Histone-lysine N-methyltr no no 0.193 0.091 0.580 3e-53
Q6CEK81170 Histone-lysine N-methyltr yes no 0.182 0.146 0.546 4e-53
Q9Y7R4920 Histone-lysine N-methyltr yes no 0.183 0.186 0.544 1e-51
>sp|Q08D57|SET1B_XENTR Histone-lysine N-methyltransferase SETD1B OS=Xenopus tropicalis GN=setd1b PE=2 SV=1 Back     alignment and function desciption
 Score =  226 bits (577), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 140/189 (74%), Gaps = 5/189 (2%)

Query: 751  GPEVNASQWANGKGLSARTNRVKLRNLLAAAEGA---ELLKASQVKARKKRLRFQRSKIH 807
            G  + A   A+ +  S R  R + R LL++  G+   +LLK +Q+K RKK+LRF +S IH
Sbjct: 1770 GKSIPAQPQASTRAGSER--RSEQRRLLSSFTGSCDSDLLKFNQLKFRKKKLRFCKSHIH 1827

Query: 808  DWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKR 867
            DWGL A+EPI A++ VIEYVG+ IR  I+D+RE RYE  GIGSSY+FR+D   ++DATK 
Sbjct: 1828 DWGLFAMEPIIADEMVIEYVGQNIRQVIADMREKRYEDEGIGSSYMFRVDHDTIIDATKC 1887

Query: 868  GGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCYCG 927
            G  ARFINHSCNPNCY KVI+VE QKKI IY+K++I   EEITY+YKFP+E+ KIPC CG
Sbjct: 1888 GNFARFINHSCNPNCYAKVITVESQKKIVIYSKQYINVNEEITYDYKFPIEDVKIPCLCG 1947

Query: 928  SKKCHGSLN 936
            ++ C G+LN
Sbjct: 1948 AENCRGTLN 1956
Histone methyltransferase that specifically methylates 'Lys-4' of histone H3, when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q66J90|SET1B_XENLA Histone-lysine N-methyltransferase SETD1B OS=Xenopus laevis GN=setd1b PE=2 SV=1 Back     alignment and function description
>sp|Q1LY77|SE1BA_DANRE Histone-lysine N-methyltransferase SETD1B-A OS=Danio rerio GN=setd1ba PE=1 SV=2 Back     alignment and function description
>sp|O15047|SET1A_HUMAN Histone-lysine N-methyltransferase SETD1A OS=Homo sapiens GN=SETD1A PE=1 SV=3 Back     alignment and function description
>sp|Q54HS3|SET1_DICDI Histone-lysine N-methyltransferase set1 OS=Dictyostelium discoideum GN=set1 PE=1 SV=1 Back     alignment and function description
>sp|Q5F3P8|SET1B_CHICK Histone-lysine N-methyltransferase SETD1B OS=Gallus gallus GN=SETD1B PE=2 SV=1 Back     alignment and function description
>sp|Q9UPS6|SET1B_HUMAN Histone-lysine N-methyltransferase SETD1B OS=Homo sapiens GN=SETD1B PE=1 SV=2 Back     alignment and function description
>sp|Q8CFT2|SET1B_MOUSE Histone-lysine N-methyltransferase SETD1B OS=Mus musculus GN=Setd1b PE=2 SV=2 Back     alignment and function description
>sp|Q6CEK8|SET1_YARLI Histone-lysine N-methyltransferase, H3 lysine-4 specific OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SET1 PE=3 SV=1 Back     alignment and function description
>sp|Q9Y7R4|SET1_SCHPO Histone-lysine N-methyltransferase, H3 lysine-4 specific OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=set1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query936
255539394 1258 set domain protein, putative [Ricinus co 0.853 0.635 0.517 0.0
224061805 1390 SET domain protein [Populus trichocarpa] 0.867 0.584 0.483 0.0
356532622 1213 PREDICTED: uncharacterized protein LOC10 0.845 0.652 0.468 0.0
356558250 1300 PREDICTED: uncharacterized protein LOC10 0.852 0.613 0.468 0.0
449458127 1289 PREDICTED: uncharacterized protein LOC10 0.858 0.623 0.441 1e-180
357449257 1232 Histone-lysine N-methyltransferase SETD1 0.842 0.640 0.458 1e-174
115489550 1212 Os12g0613200 [Oryza sativa Japonica Grou 0.804 0.621 0.357 1e-110
357161607 1194 PREDICTED: uncharacterized protein LOC10 0.773 0.606 0.344 1e-110
157734198 1388 SDG25 [Arabidopsis thaliana] 0.239 0.161 0.771 1e-102
222617469 1165 hypothetical protein OsJ_36855 [Oryza sa 0.557 0.448 0.422 1e-101
>gi|255539394|ref|XP_002510762.1| set domain protein, putative [Ricinus communis] gi|223551463|gb|EEF52949.1| set domain protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/863 (51%), Positives = 555/863 (64%), Gaps = 64/863 (7%)

Query: 86   KSGGSIEIFWGSYNIVCKMLFDHCMQVMWNAVFGDRVAEYSSAWRKRKLWSGHPKITGPA 145
            KS G+I+ FWGSY +VC++LFD+CM+VMWNAVF D +A+YS++WR+RKLWS    I  PA
Sbjct: 448  KSVGTIDNFWGSYAVVCRILFDYCMEVMWNAVFYDAIADYSNSWRRRKLWSARSNIRLPA 507

Query: 146  SDYKDDRKRMEQAPSRHDSSVSDDDCPPGFGMVEIRTENDVQPYHLSLSVPVGENLSKQK 205
            S  KD    +E+  S                +V ++ +N  Q ++LS  + V E  SK  
Sbjct: 508  S-IKDYGGEIEKLSSE-------------LELVCLKKDNHAQSHNLSPFLHVRERASKLN 553

Query: 206  NLSCNDHLLLDDVKCILDGVENELYLSTKATYTEYVEILVEDEVRKVVSASKGINMKEDV 265
             LS   H     ++ IL+ V+NEL++STK  ++EYVE L++ EV K+V  S+   + E+ 
Sbjct: 554  ALS---HKAYRGIRRILEYVKNELHMSTKPFFSEYVEFLIDKEVGKIVRVSEDDKLNEET 610

Query: 266  VDPSSHDLHTCQCGFADVNGGMRIDSNETSAEIFSSEDSKSLFQAGKPLS----KDLLSN 321
            V+  S    T     ++    +  DS + + E  +S+D++SL QAGKPL     +DL SN
Sbjct: 611  VESFSRRCQTTDYSSSEFQDELTTDSVKLNVE--TSDDTQSLVQAGKPLGSLAPEDLFSN 668

Query: 322  ILACAFKRSFSGFVDNVVDELETDEPSPPGFEDSVRKLVPSCNGKFQFSWSDEFTTKMGE 381
             +A AF +S    VD V+ +   DEP PPGF D+ R LVPS   KF+ +  +E   K+ E
Sbjct: 669  FVASAFAKSQVD-VDFVMVDQNIDEPPPPGFGDNARTLVPSPIHKFRPTQPEESIPKIRE 727

Query: 382  YVAIAMCRQKLHAIVVGEWKSLFVDDALQQFLALWCNMKECCEADGNEKAEGASNAHNEH 441
            YVA+A+CRQKLH  V+ EWKS F+D  L QFL     +++ C+     K  G SNA+ +H
Sbjct: 728  YVAMAICRQKLHDDVLSEWKSFFIDGILNQFLRSIHTLRQHCQP--GSKMGGTSNANKDH 785

Query: 442  HGDTSTVVDKLKEGSKRFHSSEA---STMVEKYTYHRKKKLLRKKFGSPSNCSNSVENAF 498
            +G   T + KLK G++ F+SS++   S++ +KYTY+RKKKL+RKK GS S     V+   
Sbjct: 786  NGTALTSLYKLK-GTREFNSSDSAGVSSVCDKYTYYRKKKLVRKKLGSSSQSITPVDTGL 844

Query: 499  QTEHVEKSRKQGVAGDVFENAKVQPSAVSSKKIGKNKLIDASSKKIGANKFTSVPSKMIG 558
            Q   VEK +KQ V  D+     V       +K G+ +L D                    
Sbjct: 845  QHHPVEKLQKQNVVKDIEVEPVVATLKKKKQKKGQTELSD-------------------- 884

Query: 559  KNKVTAESSASAGSSKVKSKLPSGYSSAKSTISQKVMKVTSAVQRDKVPVP----KPSGE 614
                       A  S VKS LPS  S AK+   QKV+K   AV R  + V     KP+ +
Sbjct: 885  --------DRRAIKSIVKSSLPSDQSMAKNGTHQKVIKYKHAVPRPSINVTIDTIKPNRK 936

Query: 615  MLSTLSADGNDVGKVVRGKAHNVGIEKDSILDSSKSKPNATKESKQKRKRTMDGLEL-HA 673
              S +S D   V KV     H+ GIE+    D SK K  ATK SK KRK + DG  + H 
Sbjct: 937  NSSDVSKDHAKVKKVSDSNNHDGGIEEVPTHDYSK-KNLATKISKLKRKHSADGRSVSHP 995

Query: 674  TKALKVAKGTAKQAASRQVAMKKTKASKSRTSNLCPRSDGCARSSISGWEWHKWSLNASP 733
             K LKV    +KQAASRQV   K K+ KSR SN CPRSDGCARSSI+GWEWHKWS +ASP
Sbjct: 996  MKFLKVTTSGSKQAASRQVTAGKAKSRKSRASNSCPRSDGCARSSITGWEWHKWSHSASP 1055

Query: 734  AERARVRGAQYVHTKYLGPEVNASQWANGKGLSARTNRVKLRNLLAAAEGAELLKASQVK 793
            A+RARVRG   +H  Y   E   SQ +NGK LSARTNRVK+RNLLAAAEGA+LLKA+Q+K
Sbjct: 1056 ADRARVRGIHCLHANYSVSEAYTSQLSNGKVLSARTNRVKMRNLLAAAEGADLLKATQLK 1115

Query: 794  ARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYL 853
            ARKKRLRFQ+SKIHDWGLVALEPIEAEDFVIEYVGELIR +ISDIRE  YEKMGIGSSYL
Sbjct: 1116 ARKKRLRFQQSKIHDWGLVALEPIEAEDFVIEYVGELIRPRISDIRERLYEKMGIGSSYL 1175

Query: 854  FRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
            FRLDDGYVVDATKRGG+ARFINHSC PNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY
Sbjct: 1176 FRLDDGYVVDATKRGGVARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 1235

Query: 914  KFPLEEKKIPCYCGSKKCHGSLN 936
            KFPLEEKKIPC CGS+KC GSLN
Sbjct: 1236 KFPLEEKKIPCNCGSRKCRGSLN 1258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061805|ref|XP_002300607.1| SET domain protein [Populus trichocarpa] gi|222842333|gb|EEE79880.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356532622|ref|XP_003534870.1| PREDICTED: uncharacterized protein LOC100805708 [Glycine max] Back     alignment and taxonomy information
>gi|356558250|ref|XP_003547420.1| PREDICTED: uncharacterized protein LOC100806034 [Glycine max] Back     alignment and taxonomy information
>gi|449458127|ref|XP_004146799.1| PREDICTED: uncharacterized protein LOC101220062 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357449257|ref|XP_003594905.1| Histone-lysine N-methyltransferase SETD1B [Medicago truncatula] gi|355483953|gb|AES65156.1| Histone-lysine N-methyltransferase SETD1B [Medicago truncatula] Back     alignment and taxonomy information
>gi|115489550|ref|NP_001067262.1| Os12g0613200 [Oryza sativa Japonica Group] gi|108862955|gb|ABA99391.2| SET domain containing protein, expressed [Oryza sativa Japonica Group] gi|113649769|dbj|BAF30281.1| Os12g0613200 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357161607|ref|XP_003579145.1| PREDICTED: uncharacterized protein LOC100843412 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|157734198|gb|ABV68922.1| SDG25 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222617469|gb|EEE53601.1| hypothetical protein OsJ_36855 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query936
TAIR|locus:21623461423 SDG25 "SET domain protein 25" 0.356 0.234 0.543 8.7e-111
FB|FBgn00400221641 Set1 [Drosophila melanogaster 0.185 0.106 0.551 4.1e-47
UNIPROTKB|F1M3Y21838 F1M3Y2 "Uncharacterized protei 0.157 0.079 0.653 1e-46
UNIPROTKB|F1LPS5853 F1LPS5 "Uncharacterized protei 0.157 0.172 0.632 1.1e-46
UNIPROTKB|Q5F3P82008 SETD1B "Histone-lysine N-methy 0.157 0.073 0.653 2.4e-46
MGI|MGI:26528201985 Setd1b "SET domain containing 0.157 0.074 0.653 2.5e-46
UNIPROTKB|F1NW811986 SETD1B "Histone-lysine N-methy 0.157 0.074 0.653 5.9e-46
UNIPROTKB|F1LWJ11879 F1LWJ1 "Uncharacterized protei 0.157 0.078 0.653 5.9e-46
UNIPROTKB|F1NKV42009 SETD1B "Histone-lysine N-methy 0.157 0.073 0.653 6.2e-46
UNIPROTKB|F1RNR21968 SETD1B "Uncharacterized protei 0.248 0.118 0.476 8.4e-46
TAIR|locus:2162346 SDG25 "SET domain protein 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 865 (309.6 bits), Expect = 8.7e-111, Sum P(3) = 8.7e-111
 Identities = 188/346 (54%), Positives = 225/346 (65%)

Query:   589 TISQKVMKVT-SAVQRDKVPVPK-----PSGEMLSTLSADGNDVGKVVRGKAHNVGIEKD 642
             +ISQK  K + S++ + K  + +     PS   LS  S D  D   V++        EK 
Sbjct:  1058 SISQKGRKSSQSSILKRKHQLDEKISNVPSRRRLSLSSTDSEDA--VIKEDYDVRNEEKL 1115

Query:   643 SILDSSKSKPNATKESKQKRKRTMDGLELHATKALKVAKGTAKQAASRQVAMKKTKASKS 702
                 S K +    K  ++++       E    K L V  G  K  A + +    +K SK 
Sbjct:  1116 PCHTSDKLQKGPNKLIRRRKPLAKHTTERSPIKDLSVDDGRPKPIALKPLEKLSSKPSKK 1175

Query:   703 RTSNLCPRSDGCARSSISGWEWHKWSLNASPAERARVRGAQYVHTKYLGPEVNASQWANG 762
             +     P+SDGCAR+SI+GW WH WSL AS  ERARVRG+  VH ++ G + + +Q    
Sbjct:  1176 KLFLSIPKSDGCARTSINGWHWHAWSLKASAEERARVRGSSCVHMQHFGSKSSLTQ---- 1231

Query:   763 KGLSARTNRVKXXXXXXXXXXXXXXXXSQVKARKKRLRFQRSKIHDWGLVALEPIEAEDF 822
               LSARTNR K                SQ+KARKK LRFQ+SKIHDWGLVALEPIEAEDF
Sbjct:  1232 NVLSARTNRAKLRNLLAAADGADVLKMSQLKARKKHLRFQQSKIHDWGLVALEPIEAEDF 1291

Query:   823 VIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCNPNC 882
             VIEYVGELIR  IS+IRE +YEKMGIGSSYLFRLDDGYV+DATKRGGIARFINHSC PNC
Sbjct:  1292 VIEYVGELIRSSISEIRERQYEKMGIGSSYLFRLDDGYVLDATKRGGIARFINHSCEPNC 1351

Query:   883 YTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCYCGS 928
             YTK+ISVEG+KKIFIYAKRHI AGEEI+YNYKFPLE+ KIPC CG+
Sbjct:  1352 YTKIISVEGKKKIFIYAKRHIDAGEEISYNYKFPLEDDKIPCNCGA 1397
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP
GO:0010452 "histone H3-K36 methylation" evidence=IDA
GO:0051568 "histone H3-K4 methylation" evidence=IGI;ISS
GO:0009909 "regulation of flower development" evidence=IMP
FB|FBgn0040022 Set1 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1M3Y2 F1M3Y2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPS5 F1LPS5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3P8 SETD1B "Histone-lysine N-methyltransferase SETD1B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2652820 Setd1b "SET domain containing 1B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW81 SETD1B "Histone-lysine N-methyltransferase SETD1B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1LWJ1 F1LWJ1 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKV4 SETD1B "Histone-lysine N-methyltransferase SETD1B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RNR2 SETD1B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.737
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query936
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 2e-44
pfam00856113 pfam00856, SET, SET domain 5e-36
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 7e-31
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information 
 Score =  155 bits (395), Expect = 2e-44
 Identities = 47/124 (37%), Positives = 69/124 (55%)

Query: 797 KRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRL 856
            +L   +S    WG+ A E I   +F+ EYVGE+I  + ++ R   Y+  G  + YLF +
Sbjct: 1   NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDI 60

Query: 857 DDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFP 916
           D    +DA ++G +ARFINHSC PNC    + V G  +I I+A R I  GEE+T +Y   
Sbjct: 61  DSDLCIDARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGSD 120

Query: 917 LEEK 920
              +
Sbjct: 121 YANE 124

Putative methyl transferase, based on outlier plant homologues. Length = 124
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 936
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 100.0
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 99.95
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.94
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.91
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.79
KOG1085392 consensus Predicted methyltransferase (contains a 99.76
COG2940480 Proteins containing SET domain [General function p 99.69
KOG11411262 consensus Predicted histone methyl transferase [Ch 99.66
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.6
KOG2589 453 consensus Histone tail methylase [Chromatin struct 98.9
KOG1081463 consensus Transcription factor NSD1 and related SE 98.83
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 97.56
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 97.07
smart0050826 PostSET Cysteine-rich motif following a subset of 95.41
KOG2084 482 consensus Predicted histone tail methylase contain 91.26
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-49  Score=471.13  Aligned_cols=748  Identities=24%  Similarity=0.223  Sum_probs=430.8

Q ss_pred             eEEEEEeechhHHHHHHHHhhccCcchhhhhhHHHHHHHHHHhHHHHHHhhHhhhhhhhHhHHHHHhccccCCCCcccCC
Q 042571           65 VTIFLIRCVNMKFIHYLLLAQKSGGSIEIFWGSYNIVCKMLFDHCMQVMWNAVFGDRVAEYSSAWRKRKLWSGHPKITGP  144 (936)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~ksvg~i~~f~~~~~~V~~~l~d~~MqvmWnaVfyD~va~y~~~WrKrklws~~~~~~~~  144 (936)
                      +-.++-.-.-.++-++.++...|+|+++++....+.|++....++|++||.     ...+.-+.||..  |- ....+.+
T Consensus       105 ~ke~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~s~~~~~~~~~~ss~~~~-----~~~~~~s~~~~~--~i-~~~~~~p  176 (1005)
T KOG1080|consen  105 SKEFETEGEILKVNSEFEEVKVSSGSSKLHPSKDSKVFPRKDNPDSSEVSC-----IDYWEASQDRYD--EI-VANDGMP  176 (1005)
T ss_pred             cccccCcceeeecccccCCceeccCccccCcccccccCCcCCCCcccccch-----hhhhhcccCccc--ce-eeccCCc
Confidence            333444444556778899999999999999999999999999999999999     233444557776  66 4444467


Q ss_pred             CCccchhhcccccCCCCCCCCcccCCC--CCCCCccccccccCcCCcccccccccCCcccccccCccCccccccchhHHH
Q 042571          145 ASDYKDDRKRMEQAPSRHDSSVSDDDC--PPGFGMVEIRTENDVQPYHLSLSVPVGENLSKQKNLSCNDHLLLDDVKCIL  222 (936)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~d~~~~~~d~--~~~fg~~~~~te~~~~~~~~s~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~  222 (936)
                      .+.+....+..+++.+..|..++-..+  ++..++..+-.               -.+.+++-..||.+-.-.--+.+..
T Consensus       177 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~d~---------------~~~~~~~v~as~~~~~~~~~~~~~s  241 (1005)
T KOG1080|consen  177 LKSDASSKGVYKPEEFTVGDLVWAKSGRNEPPWPAIVIDP---------------IRQAPRGVLASCLPVAACVMFFGNS  241 (1005)
T ss_pred             CcccccccccccCcccccchhhhcccccCCcccccceeeh---------------hhcchhhhhccCcchhhhheeeecc
Confidence            777788888888776555555543332  33333332222               2344455566666511111133444


Q ss_pred             HhhhhhhhhhhhhhHHHHHHHHHHHHhhccccccccCCCCccccCCCCCCCCCCCCCccCCCC--Ccccccccccchhcc
Q 042571          223 DGVENELYLSTKATYTEYVEILVEDEVRKVVSASKGINMKEDVVDPSSHDLHTCQCGFADVNG--GMRIDSNETSAEIFS  300 (936)
Q Consensus       223 ~~v~nel~~s~k~~l~~~~~~~i~~ev~~~~~~~~~~~~~e~~~~~~~h~~~~~~~~~~~~~~--~~~~~~~~~~~e~~~  300 (936)
                      +...+.+|-.-+..+.+++-.++...-.+.....++....|.-.          +.+...|.+  +..+++.++-+  ..
T Consensus       242 ~~~~~~~~~~~r~~m~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----------~~~~~~e~~~~~~~~~~~~~~~--~~  309 (1005)
T KOG1080|consen  242 GVPTERDYAWVRRGMERPFSRPVRPFQDQTELKREKARSFEQAL----------EEAGLAEQGNWKKDVDDAHLIT--GD  309 (1005)
T ss_pred             CCccccchhhhhhccccccchhhhhccccccccccCccchhHHH----------HHhhccccccccccccchhhhc--CC
Confidence            55567778888888888888888888888777777777666422          122223332  22222222111  11


Q ss_pred             C-cCchhhhhcCc----cchhhHHhHHHHHHHhhhccCccccccccccccCCCCCCccccccccccccCCCccccccccc
Q 042571          301 S-EDSKSLFQAGK----PLSKDLLSNILACAFKRSFSGFVDNVVDELETDEPSPPGFEDSVRKLVPSCNGKFQFSWSDEF  375 (936)
Q Consensus       301 ~-~~~~~~~~~~~----~~~~~~~s~~~~~~f~~~~~~~~~~~~d~~~~~~~~ppg~e~~~~~~~~~~~~k~~ps~s~~~  375 (936)
                      + .+++.....+.    ....+|...++.+.... +++.+.+.+.-+.++.++|||++...  .+|+.... ++....++
T Consensus       310 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~v-~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~-~~l~~k~~  385 (1005)
T KOG1080|consen  310 SSATDSALSEGGPSSFSELQKLHEKGFIKSHSSV-FRKSDKIHVPSTSITKSPPPIAKSAK--KTKALPPA-QGLLCKEC  385 (1005)
T ss_pred             CccchhhhhccccccccccccccccCCccccccc-cCCCccccccccccccCCCCchhhcc--ccCccccc-chhhhhhh
Confidence            1 12222222232    22677888888888888 89999999998889999999999885  88999988 99999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccCccccccccccccCCCCCCccchhhcccc
Q 042571          376 TTKMGEYVAIAMCRQKLHAIVVGEWKSLFVDDALQQFLALWCNMKECCEADGNEKAEGASNAHNEHHGDTSTVVDKLKEG  455 (936)
Q Consensus       376 ~p~i~~yv~~a~crq~lh~~v~~~w~slf~~~~~~~~~~s~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~k~~~~  455 (936)
                      .+++.-|+..++|++..|-.++.+| .+|.      .-++|.--.-             .....++.+.          .
T Consensus       386 ~~~~~s~~~~g~~~~~~~~~~~~d~-~~~~------~c~~~~~~~~-------------~~~~~~~~~~----------~  435 (1005)
T KOG1080|consen  386 SDETKSNQTCGICKRIWHSSDSGDW-VRCD------GCDVWIHARC-------------DKISSEKFKY----------S  435 (1005)
T ss_pred             hchhhccccccccceecccccccce-eeec------ccccceeecc-------------Cccccccccc----------c
Confidence            9999999999999999999999999 3332      2223322110             0000011111          1


Q ss_pred             ccccccccccccccchh-----hhhhhHHHHhhh----------------------------------------------
Q 042571          456 SKRFHSSEASTMVEKYT-----YHRKKKLLRKKF----------------------------------------------  484 (936)
Q Consensus       456 ~~~~~~~~~~~~~~~~t-----y~rk~k~~rk~~----------------------------------------------  484 (936)
                      |.-.+...+++++.+|+     |+++.++.+...                                              
T Consensus       436 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~s~~~~~~~~~~~~~~~~~~~~~k~~~~e~~k~~~~~~~~~k~~~~~  515 (1005)
T KOG1080|consen  436 SSGMHNYQTLNFPQEYTALNLSYCPKCKLTFDDLSTDLSPAALARVFHMLRYSVKKKKFLSEWERHTGATAKIWKDSSRV  515 (1005)
T ss_pred             cccccccccccchhhhhhhhccccchhheecccccccCCcchheeeecccCcchhhhhcccchhhhhccccccccccccc
Confidence            11111112222222222     333332221111                                              


Q ss_pred             ------------------------CCCCCCCCc------cch----------h-----hhh--hHHHhhhhcCCCCcccc
Q 042571          485 ------------------------GSPSNCSNS------VEN----------A-----FQT--EHVEKSRKQGVAGDVFE  517 (936)
Q Consensus       485 ------------------------~~~~~~~~~------~e~----------~-----~~~--~~~~k~~~~~~~~~~~~  517 (936)
                                              ..+.+|..-      ..+          +     .++  -+.....-+|+.-+..+
T Consensus       516 ~~~~~~l~~~~~~~~~~~~~~~~~~~p~s~~~~~~~s~~~~~~~~~~~~~~~l~~~~t~~c~~~~~~~~~~~n~~~~~~~  595 (1005)
T KOG1080|consen  516 KDELLPLPKWVESRGRSIMNTYNSEKPKSIVLMGKTSVQRMLLELIEKREPRLSKWTTERCAVCRDDEDWEKNVSIICDR  595 (1005)
T ss_pred             ccccccchhhhhhccccccccccccCCcchhhhccchhhhhcCcccccchhhhcCCCcccccccccccccccceeeeecc
Confidence                                    011111100      000          0     000  00001112222222222


Q ss_pred             cccccccc-----------ccccccCccccccc----ccccccCCcccC-------------------CCcccccccchh
Q 042571          518 NAKVQPSA-----------VSSKKIGKNKLIDA----SSKKIGANKFTS-------------------VPSKMIGKNKVT  563 (936)
Q Consensus       518 ~~~~~~~~-----------~~~~~~~k~~~~~~----~~~~~~~~~~~~-------------------~~~~~~~~~~~~  563 (936)
                      .+..-++-           ..-+.--.+..|+-    -..+.|+.++|.                   ++.+|+-++...
T Consensus       596 ~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~g~al~p~d~gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~  675 (1005)
T KOG1080|consen  596 CTRSVHSECYGNLKSYDGTSWVCDSCETLDIKRSCCLCPVKGGALKPTDEGRWVHVECAWFRPEVCLASPERMEPAVGTF  675 (1005)
T ss_pred             ccccCCCcccccCCCCCCCcchhhccccccCCchhhhccccCcccCCCCccchhhhhchhccccccCCCccCCCCccccc
Confidence            22221111           00000111101110    123445555544                   222221111111


Q ss_pred             hccccccCCccccCCCCCCCCccccccccccceeecccccCcccCCCCCcccccccccCCCccc--ceecc----ccccc
Q 042571          564 AESSASAGSSKVKSKLPSGYSSAKSTISQKVMKVTSAVQRDKVPVPKPSGEMLSTLSADGNDVG--KVVRG----KAHNV  637 (936)
Q Consensus       564 ~~~~~s~~~~~v~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--k~~~~----~~~~~  637 (936)
                        +        ++   +.+-+.+...       ...-+|.+....+...+-++..+ -+...+.  ++.-.    ..++.
T Consensus       676 --~--------~p---~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~  734 (1005)
T KOG1080|consen  676 --K--------IP---ALSFLKICFI-------HGSCRQCCKCETGSHAMCASRAG-YIMEAVSLEEVSQQTTSYVKEDG  734 (1005)
T ss_pred             --c--------cC---ccchhhhccc-------cccccccchhhhcceehhhcCcc-Chhhhhhhhhhhhhhhhhhhhcc
Confidence              0        00   0000000000       11223556666665544444422 1111111  11000    01111


Q ss_pred             ccccccccccCCCCCCcchhhhhhhhcccCCcccccccceeccCCccchHhhHHHHhhhhhccCCCcCCCCCCCCCCccc
Q 042571          638 GIEKDSILDSSKSKPNATKESKQKRKRTMDGLELHATKALKVAKGTAKQAASRQVAMKKTKASKSRTSNLCPRSDGCARS  717 (936)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~g~e~~~~~~l~~~~~~~~~~a~k~~~~~k~ks~gck~~~~C~~s~GCARs  717 (936)
                      +....+.-.-+..-...+...-.+++++.+              |.+...+++..+........-.....+...++|.+.
T Consensus       735 ~~~d~~l~~~~~~~~~~~~~~~~~k~~~~~--------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  800 (1005)
T KOG1080|consen  735 PGPDSVLKVNTPSGKFGAENLSQNKKSRTD--------------GVRLVLTYKEYAPLREIKSRAEPLNRIDFSSEARCR  800 (1005)
T ss_pred             CCcccceeecCccccccccchhhhhhcccc--------------ccccccccccccccccchhcccCCcccCcccccccc
Confidence            111111111111111111111222222222              222233332221111112222333444444444433


Q ss_pred             CCCCcccccccccCChHHHhhhhCCccccccccCCccccccccCCCCCcccchhhhhhhHHHHhh------hhhHHHHHH
Q 042571          718 SISGWEWHKWSLNASPAERARVRGAQYVHTKYLGPEVNASQWANGKGLSARTNRVKLRNLLAAAE------GAELLKASQ  791 (936)
Q Consensus       718 ~p~G~~~~~w~~~a~~~~r~rvrg~Pcv~~~~l~~E~~~~q~s~~~~~ssR~NRv~qR~ll~~~e------g~dllK~~q  791 (936)
                      .+.    +.|....    .+..++.+........            -.....+|..|+++++...      ..++++++|
T Consensus       801 ~~~----r~~~~~~----~~~~~s~~~~~s~~~s------------~~~s~~~rl~q~rl~a~~~~~~~~~~~~~~~~~~  860 (1005)
T KOG1080|consen  801 SES----RSDNSKS----PLAEESESDITSGGSS------------HDLSAEERLNQFRLSASFTASFILDEAEVLRYNQ  860 (1005)
T ss_pred             chh----hcccccc----cccccccccccccccc------------cchhHHhhhHHHHhhhhcccccccchHHHHHHHH
Confidence            311    2122222    2233333332211111            1234567888888887654      478999999


Q ss_pred             hhhccccEEEEecCCCcceEEEcccCCCCCEEEEeecEEeehhhhhHHHHHHhhhCCCceeEEEecCCeEEeccccCCcc
Q 042571          792 VKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIA  871 (936)
Q Consensus       792 lkgrkkrLeV~rSpikGwGVFAtedIpkGtfI~EYvGEVIs~eEad~Re~~y~~~g~~ssYlF~Lddd~vIDAt~~GNiA  871 (936)
                      ++.++++|.|++|.+|||||||.++|.+|+||+||+||+|+..+++.|+..|...|++..|+|++|++.||||+++||+|
T Consensus       861 ~~~rkk~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gniA  940 (1005)
T KOG1080|consen  861 LKFRKKYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGNIA  940 (1005)
T ss_pred             HhhhhhhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCceEEEEEECCeEEEEEEEccCCCCCCeeeeeCCCCCCCCCcceecCCCCCcccCC
Q 042571          872 RFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCYCGSKKCHGSLN  936 (936)
Q Consensus       872 RFINHSC~PNC~~r~V~veg~~RIvIfAlRDIkaGEELTIDYG~d~eekkf~ClCGS~nCRG~LN  936 (936)
                      |||||||+|||+++++.++|+.+|+|||.|+|.+||||||||.|+.++.+++|+||+++|||+||
T Consensus       941 r~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~kipClCgap~Crg~~n 1005 (1005)
T KOG1080|consen  941 RFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDDKIPCLCGAPNCRGFLN 1005 (1005)
T ss_pred             heeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccccccccccccccCCCccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999998

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains Back     alignment and domain information
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query936
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 2e-36
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 1e-19
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 2e-19
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 6e-19
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 2e-17
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 3e-17
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 6e-17
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 1e-16
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 1e-16
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 6e-16
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 1e-15
4ij8_A165 Crystal Structure Of The Complex Of Setd8 With Sam 4e-12
1zkk_A167 Crystal Structure Of Hset8 In Ternary Complex With 9e-12
2bqz_A161 Crystal Structure Of A Ternary Complex Of The Human 1e-11
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 1e-11
3f9z_A166 Structural Insights Into Lysine Multiple Methylatio 2e-11
3f9w_A166 Structural Insights Into Lysine Multiple Methylatio 2e-11
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 7e-11
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 2e-07
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure 
Iteration: 1

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 98/146 (67%), Gaps = 3/146 (2%)
Query: 793 KARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSY 852
           K  K+ +   RS IH  GL     I+A + VIEY G +IR   +D RE  Y+  GIG  Y
Sbjct: 48  KTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGC-Y 106
Query: 853 LFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYN 912
           +FR+DD  VVDAT  G  ARFINHSC PNCY++VI+++GQK I I+A R I  GEE+TY+
Sbjct: 107 MFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYD 166
Query: 913 YKFPLEE--KKIPCYCGSKKCHGSLN 936
           YKFP+E+   K+PC CG+KKC   LN
Sbjct: 167 YKFPIEDASNKLPCNCGAKKCRKFLN 192
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 Back     alignment and structure
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 Back     alignment and structure
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query936
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 8e-78
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 1e-66
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 6e-64
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 9e-64
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 1e-61
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 1e-45
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 2e-44
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 6e-43
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 6e-42
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 8e-42
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 1e-38
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 2e-34
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 4e-32
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 2e-29
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 3e-17
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 7e-16
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 1e-14
3db5_A151 PR domain zinc finger protein 4; methyltransferase 3e-14
3dal_A196 PR domain zinc finger protein 1; methyltransferase 7e-13
3ray_A237 PR domain-containing protein 11; structural genomi 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 1e-06
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 4e-06
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 3e-05
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
 Score =  250 bits (641), Expect = 8e-78
 Identities = 77/146 (52%), Positives = 98/146 (67%), Gaps = 3/146 (2%)

Query: 793 KARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSY 852
           K  K+ +   RS IH  GL     I+A + VIEY G +IR   +D RE  Y+  GIG  Y
Sbjct: 48  KTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGC-Y 106

Query: 853 LFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYN 912
           +FR+DD  VVDAT  G  ARFINHSC PNCY++VI+++GQK I I+A R I  GEE+TY+
Sbjct: 107 MFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYD 166

Query: 913 YKFPLEE--KKIPCYCGSKKCHGSLN 936
           YKFP+E+   K+PC CG+KKC   LN
Sbjct: 167 YKFPIEDASNKLPCNCGAKKCRKFLN 192
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query936
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 99.97
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.92
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.92
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.92
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.91
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.91
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.86
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.75
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.71
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.7
3ray_A237 PR domain-containing protein 11; structural genomi 99.52
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.45
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 98.75
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 98.73
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 98.63
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 96.69
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 96.16
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 95.47
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6e-38  Score=322.01  Aligned_cols=156  Identities=33%  Similarity=0.566  Sum_probs=143.9

Q ss_pred             CCCcccchhhhhhhHHHHhhhhhHHHHHHhhhccccEEEEecCCCcceEEEcccCCCCCEEEEeecEEeehhhhhHHHHH
Q 042571          763 KGLSARTNRVKLRNLLAAAEGAELLKASQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECR  842 (936)
Q Consensus       763 ~~~ssR~NRv~qR~ll~~~eg~dllK~~qlkgrkkrLeV~rSpikGwGVFAtedIpkGtfI~EYvGEVIs~eEad~Re~~  842 (936)
                      .|...|.||+.|+                  +...+++|++++.+||||||+++|++|++|+||+|++++..+++.|...
T Consensus        76 ~c~~~C~Nr~~q~------------------~~~~~lev~~t~~kG~Gl~A~~~I~~G~~I~ey~Gevi~~~e~~~r~~~  137 (232)
T 3ooi_A           76 PAGGRCQNQCFSK------------------RQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRY  137 (232)
T ss_dssp             TTGGGCCCCHHHH------------------TCCCCEEEEECSSSSEEEEESSCBCTTCEEEECCEEEECHHHHHHHHHH
T ss_pred             CCCCCcCCccccC------------------CCCccEEEEEcCCceeEEEECceecCCceeeEeeeeccCHHHHHHHHHH
Confidence            5667888988654                  5678999999999999999999999999999999999999999999887


Q ss_pred             HhhhCCCceeEEEecCCeEEeccccCCccccccCCCCCCceEEEEEECCeEEEEEEEccCCCCCCeeeeeCCCCCCC-CC
Q 042571          843 YEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEE-KK  921 (936)
Q Consensus       843 y~~~g~~ssYlF~Lddd~vIDAt~~GNiARFINHSC~PNC~~r~V~veg~~RIvIfAlRDIkaGEELTIDYG~d~ee-kk  921 (936)
                      +...+....|+|.++.+++|||+..||++|||||||.|||.++.+.+++..+|+|||+|||++||||||||++++.. .+
T Consensus       138 ~~~~~~~~~y~~~l~~~~~IDa~~~Gn~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~~~  217 (232)
T 3ooi_A          138 AQEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGNGK  217 (232)
T ss_dssp             HHHTTCCCCCEEEEETTEEEEEEEEECGGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCSTTCTT
T ss_pred             HhhcCCCceeeeecCcceEEeccccccccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCcCCCCC
Confidence            77777788999999999999999999999999999999999999999999999999999999999999999998654 57


Q ss_pred             cceecCCCCCcccCC
Q 042571          922 IPCYCGSKKCHGSLN  936 (936)
Q Consensus       922 f~ClCGS~nCRG~LN  936 (936)
                      |.|+||+++|||+|-
T Consensus       218 ~~C~CGs~~CrG~lG  232 (232)
T 3ooi_A          218 TVCKCGAPNCSGFLG  232 (232)
T ss_dssp             CBCCCCCTTCCSBCC
T ss_pred             cEeECCCCcCcCcCC
Confidence            999999999999983
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 936
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 6e-33
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 2e-31
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 6e-31
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 2e-21
d2h2ja2261 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain 0.003
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (308), Expect = 6e-33
 Identities = 29/150 (19%), Positives = 45/150 (30%), Gaps = 21/150 (14%)

Query: 795 RKKRLRFQRSKIHD--WGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSY 852
             +R+    S I     GL +   +     +  Y G  I  +  D R+            
Sbjct: 19  ESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALN------GN 72

Query: 853 LFRLDDGYVVDATK--------RGGIARFINHSCNPNC-YTKVISVEGQKKIFIYAKRHI 903
              LD+  V+D  +           +    NHS  PNC Y   +         I   R +
Sbjct: 73  TLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAV 132

Query: 904 AAGEEITYNYKFPLEEKKIPCYCGSKKCHG 933
            A EE+T  Y +       P      +   
Sbjct: 133 EADEELTVAYGYDHS----PPGKSGPEAPE 158
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query936
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 99.97
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.91
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.87
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 98.25
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.6e-33  Score=292.76  Aligned_cols=143  Identities=31%  Similarity=0.477  Sum_probs=124.9

Q ss_pred             ccccccccCCCCCcccchhhhhhhHHHHhhhhhHHHHHHhhhccccEEEEecCCCcceEEEcccCCCCCEEEEeecEEee
Q 042571          753 EVNASQWANGKGLSARTNRVKLRNLLAAAEGAELLKASQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIR  832 (936)
Q Consensus       753 E~~~~q~s~~~~~ssR~NRv~qR~ll~~~eg~dllK~~qlkgrkkrLeV~rSpikGwGVFAtedIpkGtfI~EYvGEVIs  832 (936)
                      ||+..|    .|...|.||+.|+                  +...+|+|++++.+||||||+++|++|++|+||.|++++
T Consensus       114 EC~~~C----~C~~~C~Nr~~q~------------------g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gevi~  171 (269)
T d1mvha_         114 ECNSFC----SCSMECPNRVVQR------------------GRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVIT  171 (269)
T ss_dssp             CCCTTS----CSCTTCTTCTGGG------------------CCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEEEE
T ss_pred             ECCCCC----CCCCCCCCeecCC------------------CCccCEEEEEcCCCCeEEEeCcccCCCceEEEecceEEc
Confidence            666555    6778899998654                  678899999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHhhhCCCceeEEEec-----CCeEEeccccCCccccccCCCCCCceEEEEEECC----eEEEEEEEccCC
Q 042571          833 LKISDIRECRYEKMGIGSSYLFRLD-----DGYVVDATKRGGIARFINHSCNPNCYTKVISVEG----QKKIFIYAKRHI  903 (936)
Q Consensus       833 ~eEad~Re~~y~~~g~~ssYlF~Ld-----dd~vIDAt~~GNiARFINHSC~PNC~~r~V~veg----~~RIvIfAlRDI  903 (936)
                      ..+++.|+..|...+  ..|+|.+.     ..++|||+..||++|||||||+|||.++.+++++    .++|+|||+|||
T Consensus       172 ~~e~~~R~~~y~~~~--~~~~~~l~~~~~~~~~~iDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI  249 (269)
T d1mvha_         172 SAEAAKRDKNYDDDG--ITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDI  249 (269)
T ss_dssp             HHHHHHHHTTCCSCS--CCCEEEECSSCSSSCEEEECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCB
T ss_pred             HHHHHHHHHhHhhcC--CcchhheecccccccceeeeeecCcceEEeecCCCCCcEEEEEEecCCcCccceEEEEECCcc
Confidence            999999988877654  46777663     5689999999999999999999999999888765    379999999999


Q ss_pred             CCCCeeeeeCCCCCCC
Q 042571          904 AAGEEITYNYKFPLEE  919 (936)
Q Consensus       904 kaGEELTIDYG~d~ee  919 (936)
                      ++|||||||||+..+.
T Consensus       250 ~~GEELt~DYG~~~d~  265 (269)
T d1mvha_         250 QPLEELTFDYAGAKDF  265 (269)
T ss_dssp             CTTCBCEECCCTTSSS
T ss_pred             CCCCEEEEecCCCcCC
Confidence            9999999999986543
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure