Citrus Sinensis ID: 042581

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MEITMIASRGNQVTSETVQGANLAVQHLSCDICVEECSACKRDHTTEKLDISENNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGFGFLLGFSGTTFSLKSLIHTLQDAHGTRRH
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccHHHHHHHHHHHHccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
ccEEEEEccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccEEEEEHHHEEEEHEEEEEEEEccHHHHHHHcHcccccccccccccEEEHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHEHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
MEITMiasrgnqvtsetVQGANLAVQHLSCDICveecsackrdhttekldisennshagssFAHAVINMAGMLIglgqlstpyaienggwASAFLLIGLGVICAYSAHLLgkcldknpksrsyidigqhafgrkGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPslwlrdlssisfLSVGGILMSVLIFLSVAFTAIfggvkanhripvlnlhkiphisglYIFSYaghivfpnlykamkdpskftkVSIVSFTLVTALNTALgfmgtklfgpgvnsqitlsmpQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIfpcafyikiswphiSQRLLILNVTLIGFGFllgfsgttFSLKSLIHTLQDAHGTRRH
meitmiasrgnqvtsETVQGANLAVQHLSCDICVEECSACKRDHTTEKLDISENNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGFGFLLGFSGTTFSLKSLIHtlqdahgtrrh
MEITMIASRGNQVTSETVQGANLAVQHLSCDICVEECSACKRDHTTEKLDISENNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMirssvgsllliiiltlalslPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVtligfgfllgfsgttfslKSLIHTLQDAHGTRRH
*****************VQGANLAVQHLSCDICVEECSACKRDH****************SFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGFGFLLGFSGTTFSLKSLIHTL*********
****************************************************************AVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGFGFLLGFSGTTFSLKSL*************
*************TSETVQGANLAVQHLSCDICVEECSACKRDHTTEKLDISENNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGFGFLLGFSGTTFSLKSLIHTL*********
***********************************************KLDISENNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGFGFLLGFSGTTFSLKSLIHTLQ********
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MEITMIASRGNQVTSETVQGANLAVQHLSCDICVEECSACKRDHTTEKLDISENNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGFGFLLGFSGTTFSLKSLIHTLQDAHGTRRH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query459 2.2.26 [Sep-21-2011]
P47082602 Vacuolar amino acid trans yes no 0.742 0.566 0.254 2e-23
P34579486 Vesicular GABA transporte yes no 0.938 0.886 0.237 4e-19
Q6DIV6518 Vesicular inhibitory amin yes no 0.806 0.714 0.240 2e-16
Q6PF45518 Vesicular inhibitory amin N/A no 0.788 0.698 0.239 6e-16
Q9H598525 Vesicular inhibitory amin yes no 0.819 0.716 0.241 7e-14
O35458525 Vesicular inhibitory amin yes no 0.819 0.716 0.239 3e-13
Q95KE2525 Vesicular inhibitory amin N/A no 0.819 0.716 0.239 3e-13
O35633525 Vesicular inhibitory amin yes no 0.819 0.716 0.237 5e-13
Q7Z2H8476 Proton-coupled amino acid no no 0.897 0.865 0.237 2e-11
Q28HE5448 Probable sodium-coupled n no no 0.769 0.787 0.278 2e-11
>sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 173/377 (45%), Gaps = 36/377 (9%)

Query: 58  AGSSFA-HAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAY-SAHLLGKCLD 115
           AG S A   + N   +LIG+G L+ P  ++  GW     ++ +  +  + +A LL +CLD
Sbjct: 205 AGQSTAPQTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLD 264

Query: 116 KNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSW 175
            +P   SY D+G  AFG KGRA  +    L++  + VS  IL  D+L  +F   S     
Sbjct: 265 TDPTLISYADLGYAAFGTKGRALISALFTLDLLGSGVSLVILFGDSLNALFPQYS----- 319

Query: 176 AKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKANH 235
                +    +++  I  P +++  LS +S +S+ GIL +    L +    ++       
Sbjct: 320 -----TTFFKIVSFFIVTPPVFI-PLSVLSNISLLGILSTTGTVLVICCCGLYKSSSPGS 373

Query: 236 RIPVLNLHKIP----HIS---GLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTA 288
            +  +     P    H+    GL    + GH VFPNL   M+ P KF      ++ + + 
Sbjct: 374 LVNPMETSMWPIDLKHLCLSIGLLSACWGGHAVFPNLKTDMRHPDKFKDCLKTTYKITSV 433

Query: 289 LNTALGFMGTKLFGPGVNSQITLSM------PQHLVVTKIALWATVLTPMTKYALEFAPL 342
            +     +G  +FG  V  +IT ++      P+  V   I+   T++ P+ K  L   P+
Sbjct: 434 TDIGTAVIGFLMFGNLVKDEITKNVLLTEGYPK-FVYGLISALMTII-PIAKTPLNARPI 491

Query: 343 AIQLENHLPIS--LSARSKMMIRSSVGSLLL------IIILTLALSLPYFQYVLSLTGSL 394
              L+  + +     A S +  R++ G  +       ++ + +A++ P F  +++  G+ 
Sbjct: 492 VSVLDVLMNVQHIDEAASAIKRRAAKGLQVFNRIFINVVFVLIAINFPEFDKIIAFLGAG 551

Query: 395 VSICICLIFPCAFYIKI 411
           +   ICLI PC FY+++
Sbjct: 552 LCFTICLILPCWFYLRL 568
Required for the vacuolar uptake of large neutral amino acids including tyrosine, glutamine, asparagine, isoleucine and leucine. Requires ATP for function.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|P34579|UNC47_CAEEL Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2 Back     alignment and function description
>sp|Q6DIV6|VIAAT_XENTR Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q6PF45|VIAAT_XENLA Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2 Back     alignment and function description
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus GN=Slc32a1 PE=1 SV=1 Back     alignment and function description
>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter OS=Macaca fascicularis GN=SLC32A1 PE=2 SV=1 Back     alignment and function description
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter OS=Mus musculus GN=Slc32a1 PE=1 SV=3 Back     alignment and function description
>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1 Back     alignment and function description
>sp|Q28HE5|S38A6_XENTR Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
224131460436 amino acid transporter [Populus trichoca 0.930 0.979 0.717 1e-172
255557208477 amino acid transporter, putative [Ricinu 0.973 0.937 0.707 1e-169
225433700434 PREDICTED: vacuolar amino acid transport 0.895 0.947 0.726 1e-164
356510901471 PREDICTED: vacuolar amino acid transport 0.949 0.925 0.704 1e-164
224069076435 amino acid transporter [Populus trichoca 0.925 0.977 0.685 1e-159
357462931476 Amino acid transporter [Medicago truncat 0.945 0.911 0.659 1e-156
356569170472 PREDICTED: vacuolar amino acid transport 0.967 0.940 0.643 1e-154
356538075482 PREDICTED: vacuolar amino acid transport 0.897 0.854 0.669 1e-154
212724086464 hypothetical protein [Zea mays] gi|19469 0.984 0.974 0.616 1e-151
125534141486 hypothetical protein OsI_35871 [Oryza sa 0.984 0.930 0.577 1e-148
>gi|224131460|ref|XP_002321090.1| amino acid transporter [Populus trichocarpa] gi|222861863|gb|EEE99405.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 313/436 (71%), Positives = 361/436 (82%), Gaps = 9/436 (2%)

Query: 28  LSCDICVEECSACKRDHTTEKL--------DISENNSHAGSSFAHAVINMAGMLIGLGQL 79
           ++CD CVEE   CK DH T+ L        D+  +   A SSFAH+VINM GMLIGLGQL
Sbjct: 1   VTCDACVEENKGCKCDHDTQDLKSAVVNEADVEHHTDQANSSFAHSVINMIGMLIGLGQL 60

Query: 80  STPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAA 139
           STPYA+ENGGW SAFLL+GLGVICAY++HLLGKCL K+PKSRSY DIGQHAFG  GR  A
Sbjct: 61  STPYALENGGWVSAFLLVGLGVICAYTSHLLGKCLAKSPKSRSYTDIGQHAFGSNGRVLA 120

Query: 140 ATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLS-WAKLSTSQMLTVIAVLIALPSLWL 198
           ATFIYLEIFMALVSYTI LHDNLITVF+GT L L  WAKL  SQ+LT++ VL+ALPSLWL
Sbjct: 121 ATFIYLEIFMALVSYTISLHDNLITVFAGTQLRLPIWAKLYKSQLLTLMGVLVALPSLWL 180

Query: 199 RDLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKANHRIPVLNLHKIPHISGLYIFSYAG 258
           RDLSSISFLS GGILMS++IF SVA TAIF  VKANH IP L+LHKIP ISGLYIFSYAG
Sbjct: 181 RDLSSISFLSSGGILMSIVIFTSVACTAIFQVVKANHSIPALHLHKIPAISGLYIFSYAG 240

Query: 259 HIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLV 318
           HIVFP+LYK+MKDPSKFT VSIVSF  VTAL  +L FMG +LFGP V+SQITLSMP+H +
Sbjct: 241 HIVFPDLYKSMKDPSKFTMVSIVSFASVTALYASLAFMGARLFGPEVSSQITLSMPRHHI 300

Query: 319 VTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLA 378
           +TKIALWATVLTPMTKYALEFAP AIQLE++LP S+S+R+K +IR +VGS LL++IL LA
Sbjct: 301 ITKIALWATVLTPMTKYALEFAPFAIQLEHNLPNSISSRTKTVIRGAVGSFLLLVILALA 360

Query: 379 LSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGFGFLLGFSG 438
           LS+PYF++VLSLTGSLVS+ IC++FPCAFYIK+SW  IS+ +LILNV L+ FG LLG  G
Sbjct: 361 LSVPYFEHVLSLTGSLVSVSICIVFPCAFYIKLSWAQISKPVLILNVILLAFGLLLGVFG 420

Query: 439 TTFSLKSLIHTLQDAH 454
           T  S K LI +L+ AH
Sbjct: 421 TISSSKLLITSLERAH 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255557208|ref|XP_002519635.1| amino acid transporter, putative [Ricinus communis] gi|223541225|gb|EEF42780.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225433700|ref|XP_002266204.1| PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera] gi|296089627|emb|CBI39446.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356510901|ref|XP_003524172.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224069076|ref|XP_002302894.1| amino acid transporter [Populus trichocarpa] gi|222844620|gb|EEE82167.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357462931|ref|XP_003601747.1| Amino acid transporter [Medicago truncatula] gi|355490795|gb|AES71998.1| Amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|356569170|ref|XP_003552778.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356538075|ref|XP_003537530.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|212724086|ref|NP_001132410.1| hypothetical protein [Zea mays] gi|194694308|gb|ACF81238.1| unknown [Zea mays] gi|414588280|tpg|DAA38851.1| TPA: hypothetical protein ZEAMMB73_211648 [Zea mays] Back     alignment and taxonomy information
>gi|125534141|gb|EAY80689.1| hypothetical protein OsI_35871 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
TAIR|locus:2149045426 AT5G16740 [Arabidopsis thalian 0.921 0.992 0.561 2e-118
TAIR|locus:2185143526 AT5G02170 [Arabidopsis thalian 0.786 0.686 0.371 1.3e-66
TAIR|locus:2185158550 AT5G02180 [Arabidopsis thalian 0.760 0.634 0.375 4.5e-66
TAIR|locus:2063255536 AT2G41190 [Arabidopsis thalian 0.793 0.679 0.368 2.6e-63
TAIR|locus:2056118550 AT2G39130 [Arabidopsis thalian 0.762 0.636 0.372 4.8e-62
TAIR|locus:2083549528 AT3G09340 "AT3G09340" [Arabido 0.762 0.662 0.353 7.1e-61
TAIR|locus:2082652546 AT3G54830 "AT3G54830" [Arabido 0.740 0.622 0.378 3.1e-60
TAIR|locus:2083529524 AT3G09330 "AT3G09330" [Arabido 0.762 0.667 0.347 2.2e-59
TAIR|locus:2087012405 AT3G28960 "AT3G28960" [Arabido 0.782 0.886 0.309 8.9e-54
TAIR|locus:2150911423 AT5G15240 [Arabidopsis thalian 0.816 0.886 0.320 3e-53
TAIR|locus:2149045 AT5G16740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 239/426 (56%), Positives = 285/426 (66%)

Query:    30 CDICVEECSACKRDHTTEKLDISENNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGG 89
             C  CVEE   C+ +H     ++    +   SSF H+VINM GMLIGLGQLS PYA+E+GG
Sbjct:     3 CVACVEENKGCECEHEKPVRELVLEAASENSSFLHSVINMVGMLIGLGQLSMPYAVESGG 62

Query:    90 WASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFM 149
             W S FLLI  G++  Y++H+LGKC+ +NPKS+SY DIG  AFGR GR     FIYLEIFM
Sbjct:    63 WMSIFLLISFGILTTYTSHILGKCIRRNPKSKSYSDIGYSAFGRHGRLIVCLFIYLEIFM 122

Query:   150 ALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSV 209
             ALVSYTI LHDN+   F  T    S      +  LT +AV IALPSLW+RDLSSISFLS 
Sbjct:   123 ALVSYTISLHDNISAAFPAT---FSNHGHFPAAKLTAVAVAIALPSLWIRDLSSISFLSS 179

Query:   210 GGILMSVLIFLSVAFTAIFGGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAM 269
             GGILMS +IF SV +TAIFGGV  + +IPVL L  IP +SG+Y+FS+ GHIVFPNLY +M
Sbjct:   180 GGILMSAIIFGSVVYTAIFGGVIDDGKIPVLRLENIPTVSGIYLFSFGGHIVFPNLYTSM 239

Query:   270 KDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVL 329
             KDPSKFTKVSIVSF  VTAL  AL   G K+FGP VNSQITLS+P+HLVVTKIALWATVL
Sbjct:   240 KDPSKFTKVSIVSFATVTALYGALAITGAKMFGPSVNSQITLSLPKHLVVTKIALWATVL 299

Query:   330 TPMTKYALEFAPLAIQLENHLPISLSARSKMMXXXXXXXXXXXXXXXXXXXXPYFQYVLS 389
             TPMTKYALEFAPLAIQLE  LP +++ R+K++                    PYF YVLS
Sbjct:   300 TPMTKYALEFAPLAIQLERSLPSTMTDRTKLVARGLMGSALLLVILALALTVPYFGYVLS 359

Query:   390 LTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVXXXXXXXXXXXXXXXXXXKSLIHT 449
             LTGSLVS+ I +  P AFY+KI W  +++     N+                  K L+  
Sbjct:   360 LTGSLVSVTIAVTLPSAFYLKICWDGMTKFTRAANLGFVVLGCVLGVLGSFESSKLLVKE 419

Query:   450 LQDAHG 455
             L   HG
Sbjct:   420 LVRVHG 425
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2185143 AT5G02170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185158 AT5G02180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063255 AT2G41190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056118 AT2G39130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083549 AT3G09340 "AT3G09340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082652 AT3G54830 "AT3G54830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083529 AT3G09330 "AT3G09330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087012 AT3G28960 "AT3G28960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150911 AT5G15240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 5e-48
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 2e-19
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 3e-10
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 8e-04
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  169 bits (431), Expect = 5e-48
 Identities = 119/412 (28%), Positives = 186/412 (45%), Gaps = 35/412 (8%)

Query: 59  GSSFAHAVINMAGMLIGLGQLSTPYAIENGGW-ASAFLLIGLGVICAYSAHLLGKCLD-- 115
             S   AV N+   +IG G LS PYA +  GW     LL+ +G+I  Y+ HLL +C    
Sbjct: 2   TISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYV 61

Query: 116 ---KNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLD 172
              K  + +SY D+G   FG KG+      I + +F   +SY I   DNL  +F      
Sbjct: 62  DKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFDT 121

Query: 173 LSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFG--- 229
              + +       +I  LI +P  ++ +LS++S LS+   + S+ I + V   A  G   
Sbjct: 122 CHISLVY----FIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLT 177

Query: 230 --GVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKF---TKVSIVSFT 284
             GV +      + L ++    G+ +F++ GH V   +   MK PSKF   TKV + +  
Sbjct: 178 AQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAII 237

Query: 285 LVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAI 344
           +VT L   +G +G   FG  V   I L++P+   +  IA    VL  +  Y L+  P+  
Sbjct: 238 IVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQ 297

Query: 345 QLENHL--------PISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVS 396
            +EN L            S   +++IRS     L++I   +A+S+P+    LSL G+   
Sbjct: 298 IVENLLFRKGASGKHNPKSKLLRVVIRS----GLVVITYLIAISVPFLGDFLSLVGATSG 353

Query: 397 ICICLIFPCAFYIKISWP-HISQR----LLILNVTLIGFGFLLGFSGTTFSL 443
             +  I P  F++K+      S        IL+V  I  G LL   G    +
Sbjct: 354 APLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLI 405

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 459
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.96
PRK10483414 tryptophan permease; Provisional 99.96
PRK09664415 tryptophan permease TnaB; Provisional 99.95
PRK15132403 tyrosine transporter TyrP; Provisional 99.95
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.95
PRK13629443 threonine/serine transporter TdcC; Provisional 99.92
TIGR00814397 stp serine transporter. The HAAAP family includes 99.9
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.83
PRK10655438 potE putrescine transporter; Provisional 99.83
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.83
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.82
PRK11021410 putative transporter; Provisional 99.81
PRK10644445 arginine:agmatin antiporter; Provisional 99.81
PRK10249458 phenylalanine transporter; Provisional 99.81
PRK15049499 L-asparagine permease; Provisional 99.8
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.79
PRK10746461 putative transport protein YifK; Provisional 99.79
TIGR00909429 2A0306 amino acid transporter. 99.79
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.78
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.78
PRK11387471 S-methylmethionine transporter; Provisional 99.78
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.78
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.77
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.77
PRK10836489 lysine transporter; Provisional 99.77
TIGR00930 953 2a30 K-Cl cotransporter. 99.77
PRK10238456 aromatic amino acid transporter; Provisional 99.76
TIGR00911501 2A0308 L-type amino acid transporter. 99.76
PRK10580457 proY putative proline-specific permease; Provision 99.75
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.75
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.73
TIGR00913478 2A0310 amino acid permease (yeast). 99.73
COG0833541 LysP Amino acid transporters [Amino acid transport 99.73
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.72
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.71
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.63
COG0531466 PotE Amino acid transporters [Amino acid transport 99.59
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.56
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.55
PF03845320 Spore_permease: Spore germination protein; InterPr 99.54
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.5
PRK15238496 inner membrane transporter YjeM; Provisional 99.49
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.46
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.37
KOG3832319 consensus Predicted amino acid transporter [Genera 99.14
KOG1289550 consensus Amino acid transporters [Amino acid tran 99.09
COG3949349 Uncharacterized membrane protein [Function unknown 99.01
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.9
COG1457442 CodB Purine-cytosine permease and related proteins 98.87
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.86
PRK11375484 allantoin permease; Provisional 98.7
TIGR00813407 sss transporter, SSS family. have different number 98.69
PRK12488549 acetate permease; Provisional 98.63
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.6
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.59
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.58
PRK11017404 codB cytosine permease; Provisional 98.58
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.48
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 98.46
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.42
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.4
PRK09395551 actP acetate permease; Provisional 98.38
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.35
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.33
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 98.25
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 98.2
PRK15419502 proline:sodium symporter PutP; Provisional 98.2
PRK10484523 putative transporter; Provisional 98.18
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.06
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.99
PRK00701439 manganese transport protein MntH; Reviewed 97.95
COG4147529 DhlC Predicted symporter [General function predict 97.77
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 97.63
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.58
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.46
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.33
PHA02764399 hypothetical protein; Provisional 97.1
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 97.09
COG0733439 Na+-dependent transporters of the SNF family [Gene 96.72
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.56
PRK15015 701 carbon starvation protein A; Provisional 96.51
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.34
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 96.32
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 95.91
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 95.15
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 95.09
KOG2466572 consensus Uridine permease/thiamine transporter/al 94.86
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 94.24
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 93.86
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 91.88
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 87.26
PRK15433439 branched-chain amino acid transport system 2 carri 86.79
KOG3659 629 consensus Sodium-neurotransmitter symporter [Signa 85.75
PLN02680232 carbon-monoxide oxygenase 83.43
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 82.31
KOG4812262 consensus Golgi-associated protein/Nedd4 WW domain 81.52
KOG3660 629 consensus Sodium-neurotransmitter symporter [Signa 80.48
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-58  Score=438.06  Aligned_cols=387  Identities=24%  Similarity=0.353  Sum_probs=351.6

Q ss_pred             ccCCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhC-----CCCCCHHHH
Q 042581           53 ENNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKN-----PKSRSYIDI  126 (459)
Q Consensus        53 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~y~~~  126 (459)
                      ..+.++..|..++..|+.++++|+|+|++|++|+++||+ |.+..++++.++.||++.+++|.++.     ....+|++.
T Consensus        40 ~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~  119 (449)
T KOG1304|consen   40 LRDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAET  119 (449)
T ss_pred             cccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHH
Confidence            334456799999999999999999999999999999998 99999999999999999999986431     113677777


Q ss_pred             HHHH----------hchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-ccCccccccchhhHHHHHHHHHHHhh
Q 042581          127 GQHA----------FGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGT-SLDLSWAKLSTSQMLTVIAVLIALPS  195 (459)
Q Consensus       127 ~~~~----------~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~pl  195 (459)
                      ++.+          +||++|.+++..+.+.++|.|++|.++.++.++++++.. ....      +.+.++.+.....+++
T Consensus       120 ~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~------s~~~~i~~~~~~~lll  193 (449)
T KOG1304|consen  120 AESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVL------SVRLYILIQLPPLLLL  193 (449)
T ss_pred             HHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCc------cHHHHHHHHHHHHHHH
Confidence            6655          589999999999999999999999999999999999832 2222      5788899999999999


Q ss_pred             cccCCCCChhHHHHHHHHHHHHHHHHhhhhhhccCcccCCCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCccc
Q 042581          196 LWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKF  275 (459)
Q Consensus       196 ~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~  275 (459)
                      +++|+++.++.+|.++.++.++.++++.++...+.++.++.....++.+++..+|+.+|||+|+..+.|++++||+|+++
T Consensus       194 ~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F  273 (449)
T KOG1304|consen  194 NLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKF  273 (449)
T ss_pred             HHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhc
Confidence            99999999999999999999998888888888776666666667778999999999999999999999999999999999


Q ss_pred             h---hHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCC
Q 042581          276 T---KVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPI  352 (459)
Q Consensus       276 ~---~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~  352 (459)
                      +   +++..++.+++++|..+|++||++||+++++.+++|+|+ +++...+++++++.++.+||++++|..+.+++.+.+
T Consensus       274 ~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~  352 (449)
T KOG1304|consen  274 PGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRK  352 (449)
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHH
Confidence            8   999999999999999999999999999999999999999 888889999999999999999999999999998876


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCC---cchhHHHHHHHHHh
Q 042581          353 SLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPH---ISQRLLILNVTLIG  429 (459)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~---~~~~~~~~~~~~~~  429 (459)
                      +..++++++..+.+|..++.+++.+|..+||++.+++++|+++++.+.+++|++++++.++++   +.+|+.+.+..+++
T Consensus       353 k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~  432 (449)
T KOG1304|consen  353 KFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIV  432 (449)
T ss_pred             hcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHH
Confidence            666555788889999999999999999999999999999999999999999999999998875   34799999999999


Q ss_pred             hhhhhhhhhhHHHHHHH
Q 042581          430 FGFLLGFSGTTFSLKSL  446 (459)
Q Consensus       430 ~g~~~~v~~~~~~i~~l  446 (459)
                      +|++.++.|||+++.++
T Consensus       433 ~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  433 FGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHHHhhhhhcC
Confidence            99999999999999864

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>PLN02680 carbon-monoxide oxygenase Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only] Back     alignment and domain information
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.5 bits (104), Expect = 7e-05
 Identities = 46/259 (17%), Positives = 77/259 (29%), Gaps = 74/259 (28%)

Query: 142 FIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDL 201
           F  L +F              I   +   L L W  +  S ++ V+  L    SL  +  
Sbjct: 375 FDRLSVFPP---------SAHIP--TIL-LSLIWFDVIKSDVMVVVNKLHKY-SLVEKQP 421

Query: 202 SSISFLSVGGILMSVLIFLSVAFTAIFGGVKANHRIPV--LNLHK--------IPHISGL 251
              +  S+  I + + + L            A HR  V   N+ K         P++   
Sbjct: 422 KESTI-SIPSIYLELKVKLE--------NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ- 471

Query: 252 YIFSYAGHIVFPNLYKAMKD--PSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQI 309
           Y +S+ GH    +L         + F  V    F     L+    F+  K+         
Sbjct: 472 YFYSHIGH----HLKNIEHPERMTLFRMV----F-----LD--FRFLEQKIRHDSTAWNA 516

Query: 310 TLSMPQHLVVTK-----IALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRS 364
           + S+   L   K     I         +    L+F P   ++E +L  S           
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP---KIEENLICSKYTD------- 566

Query: 365 SVGSLLLIIILTLALSLPY 383
                    +L +AL    
Sbjct: 567 ---------LLRIALMAED 576

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.88
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.79
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.7
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.11
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.53
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.17
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 96.36
4ain_A539 Glycine betaine transporter BETP; membrane protein 81.01
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.88  E-value=2.4e-20  Score=186.45  Aligned_cols=349  Identities=10%  Similarity=0.078  Sum_probs=219.2

Q ss_pred             CCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchh
Q 042581           55 NSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRK  134 (459)
Q Consensus        55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~  134 (459)
                      +++|+.+.++.++..+++++|+|++.+|...++.|..+++.+++.+++....+..+.|...+.|+.++..++.++.+||+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~   84 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPF   84 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCCh
Confidence            34688999999999999999999999998888888768888888999999999999999999999789999999999999


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 042581          135 GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILM  214 (459)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~  214 (459)
                      .+++..+.+++.......++....++++..+++....++      ....+.++.. +.......+..+....++.+....
T Consensus        85 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~in~~g~~~~~~~~~~~~~~  157 (445)
T 3l1l_A           85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPW------VLTITCVVVL-WIFVLLNIVGPKMITRVQAVATVL  157 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHH------HHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccH------HHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHHHH
Confidence            999999999998888888888888888887765432111      1122222222 222222234555555555554444


Q ss_pred             HHHHHHHhhhhhhcc-Cccc-CCCC---CcccCCchhhHHHHHhhhcccceeccchhhhccCCc-cchhHHHHHHHHHHH
Q 042581          215 SVLIFLSVAFTAIFG-GVKA-NHRI---PVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPS-KFTKVSIVSFTLVTA  288 (459)
Q Consensus       215 ~~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~-~~~~~~~~~~~~~~~  288 (459)
                      .+..++.++...... +.+. .+..   ...++.++..++...+|+|.|++.+....+|+|||+ +.+|++..+..++.+
T Consensus       158 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~  237 (445)
T 3l1l_A          158 ALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAV  237 (445)
T ss_dssp             HHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHH
Confidence            433333333322221 1111 1111   112355788899999999999999999999999997 599999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCh----hhHh---hcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHh-----hCCCCccc
Q 042581          289 LNTALGFMGTKLFGPGVN----SQIT---LSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLEN-----HLPISLSA  356 (459)
Q Consensus       289 ~Y~~~g~~gy~~fg~~~~----~~il---~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~-----~~~~~~~~  356 (459)
                      +|++..+......+.+..    ++..   .... .++...+..+...+..+.+..-..+...+.+..     .+|+...+
T Consensus       238 ~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~  316 (445)
T 3l1l_A          238 CYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFAR  316 (445)
T ss_dssp             HHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGC
T ss_pred             HHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHh
Confidence            999998887776664321    1111   1111 122333444445555555444444444333332     33322111


Q ss_pred             --hhhHHHH-HHHHHHHHHHHHHHHHh--Cc----hHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCCc
Q 042581          357 --RSKMMIR-SSVGSLLLIIILTLALS--LP----YFQYVLSLTGSLVSICICLIFPCAFYIKISWPHI  416 (459)
Q Consensus       357 --~~~~~~~-~~~~~~~~~~~~~ia~~--~~----~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~~  416 (459)
                        +.+...+ .++...+   +.++...  .|    .++.+.++.+  ....+.|.++++.+++.++++.
T Consensus       317 ~~~~~~P~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          317 VNKAGTPVAGLIIVGIL---MTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             CCTTCCCHHHHHHHHHH---HHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             cCCCCCCHHHHHHHHHH---HHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence              1111111 1111111   1222222  22    3556666544  3456788899999998887654
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 96.94
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.94  E-value=0.18  Score=47.98  Aligned_cols=104  Identities=17%  Similarity=0.164  Sum_probs=62.9

Q ss_pred             CCCchHHHHHHHHHhhhhhc-cchhHHHHh-hhchHH----HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHh
Q 042581           58 AGSSFAHAVINMAGMLIGLG-QLSTPYAIE-NGGWAS----AFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAF  131 (459)
Q Consensus        58 ~~~s~~~~~~~l~~~~iG~G-il~lP~~~~-~~G~~g----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~  131 (459)
                      +-.|..+-++..++..+|.| +.=.|+-.. +.|..-    .++++++|+=..+.=..+.+..++.+- ..+..+.....
T Consensus         3 ~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i-~~~~~i~~~~~   81 (509)
T d2a65a1           3 HWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH-GTTPAIFYLLW   81 (509)
T ss_dssp             CCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC-CSHHHHHHHHS
T ss_pred             CCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc-cHHHHHHHHhc
Confidence            45678889999999999998 566997754 555333    333344444444444555666555554 78888877766


Q ss_pred             chhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042581          132 GRKGRAAAATFIYLEIFMALVSYTILLHDNL  162 (459)
Q Consensus       132 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l  162 (459)
                      +++....+++...+..+..++-|.+..+-.+
T Consensus        82 ~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l  112 (509)
T d2a65a1          82 RNRFAKILGVFGLWIPLVVAIYYVYIESWTL  112 (509)
T ss_dssp             CSHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5433333444444444555555555555433