Citrus Sinensis ID: 042585

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
SLYEMCRLKKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTVKTYGSEAALNFANRCISYAIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINTCESNTIFSFGSIALFSLALRKPLGLASREAQDFLATFGKVV
Secondary Structure (PSIPRED)
cHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHHHHcccccccccccEEEEEEcccccccccEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEcccEEEEEEEccccccccccccccccccEEEEEEEEEcHHHHHHHHHccccccEEEEEEEEccccEEEcccccEEEEEEEEEccccccEEEcccccEEEEEEEEccccEEEEEccccccEEEEEEEEcccEEEEccccEEEEEEEccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccEcccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccEEEEccEEEEEEEEEEEcccccccccccccHcEEEcccccccHHHHHHHHccccHHHHEEEEEccccEEccccccccEEEcccccccHHHHHHHHcccccHEEEEEEEcccccEEEEcccccEEEEEEccccccccccccccHEEEEccccccHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
slyemcrlkknhnvdrisalpqPILQLIMSFLPFKQVVQICMVSKVWLQawhtfpdleidkvkflgpskkltvktygSEAALNFANRCISYAIERNVEELEVEHLRRldtwnslpqmvLRSKSIKVLTLQNykleslgnddvKLLSLRKLhlsdvyaddqvmnnlfaqspllqhlefvrynnlvnvsscknlkhldlcdgsytdewlnsqisglpLLEQLHISLCNNIESITISSLRLKKLIINTcesntifsfgsIALFSLALRKPLGLASREAQDFLATFGKVV
Flexible Loop (DISEMBL)
slyemcrlkknhnvdrisALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTVKTYGSEAALNFANRCISYAIERNVEELEVEHLRrldtwnslpqmvLRSKSIKVLTLQNykleslgnddVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINTCESNTIFSFGSIALFSLALRKPLGLASREAQDFLATFGKVV
Low Complexity Region (SEG)
SLYEMCRLKKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTVKTYGSEAALNFANRCISYAIernveelevehlrrlDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINTCESNTIFSFGSIALFSLALRKPLGLASREAQDFLATFGKVV
Disordered region (IsUnstruct)
*****CRLKKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTVKTYGSEAALNFANRCISYAIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINTCESNTIFSFGSIALFSLALRKPLGLASREAQDFLAT*****
Disordered Region (DISOPRED)
******************ALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTVKTYGSEAALNFANRCISYAIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINTCESNTIFSFGSIALFSLALRKPLGLASREAQDFLATFGKVV
Disordered Region (DISEMBL)
SLYEMCRLKKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTVKTYGSEAALNFANRCISYAIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINTCESNTIFSFGSIALFSLALRKPLGLASREAQDFLATFGKVV
Disordered Region (DISPRO)
SLYEMCRLKKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTVKTYGSEAALNFANRCISYAIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINTCESNTIFSFGSIALFSLALRKPLGLASREAQDFLATFGKVV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SLYEMCRLKKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTVKTYGSEAALNFANRCISYAIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINTCESNTIFSFGSIALFSLALRKPLGLASREAQDFLATFGKVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q9LV26	456	Putative F-box/LRR-repeat	yes	no	0.597	0.375	0.282	3e-10
Q9LXJ7	416	FBD-associated F-box prot	no	no	0.737	0.507	0.282	7e-09
Q8H1R7	419	F-box/FBD/LRR-repeat prot	no	no	0.835	0.570	0.268	9e-09
Q9LYZ2	469	Putative F-box/LRR-repeat	no	no	0.674	0.411	0.275	2e-08
Q9FM94	421	FBD-associated F-box prot	no	no	0.800	0.543	0.241	9e-08
Q501E9	455	F-box/FBD/LRR-repeat prot	no	no	0.720	0.452	0.277	6e-07
Q9LJF8	306	F-box/LRR-repeat protein	no	no	0.741	0.692	0.28	7e-07
Q8LF09	453	F-box/FBD/LRR-repeat prot	no	no	0.678	0.428	0.269	7e-07
Q9C7M1	422	Putative FBD-associated F	no	no	0.758	0.514	0.270	7e-07
Q9LYZ4	458	F-box/LRR-repeat protein	no	no	0.517	0.323	0.262	2e-06

>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 38/209 (18%)

Query: 7   RLKKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLG 66
           R K    VD IS+LP  ILQ I+SF+P K  +   ++SK W   W   P L  +  +   
Sbjct: 23  RRKIKEAVDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEA 82

Query: 67  PSKKLTVKTYGSEAALNFA------------NRCISYAIERNVEELEVEHLRRLDTWNSL 114
           P    T+  Y +   + F                I +A+ RNV+ L       LD WN +
Sbjct: 83  PFIDETLTRYTASKMMRFHLHTSLINNVPHLESWIKFAMSRNVDHLS------LDLWNQV 136

Query: 115 ------PQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQ 168
                 P     + S+K LT+    L+   +D +  + L+KL+LS     D+ M N+   
Sbjct: 137 ANKFKFPDFFHINSSLKQLTVV---LD--FSDTMIAICLKKLYLSTCLLSDESMANILFG 191

Query: 169 SPLLQHLEFVRYNNLVNVSSCKNLKHLDL 197
            P+L+ L          +  C  L+ LDL
Sbjct: 192 CPILESL---------TLDHCGGLRVLDL 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXJ7|FBD11_ARATH FBD-associated F-box protein At3g52670 OS=Arabidopsis thaliana GN=At3g52670 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 15  DRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPS---KKL 71
           DR++ LP+ ++  I+SFLP + V+   ++SK W   W   P+LE D   +        ++
Sbjct: 10  DRMNQLPEDLILRILSFLPTELVIATSVLSKQWRSLWKLVPNLEFDSDDYESEHYTFSEI 69

Query: 72  TVKTYGSEAALNFANRCISYAIERNVEELEV-------EHLRRLDTWNSLPQMVLRSKSI 124
             K++ S  A    +  +S+    N  ++ +        HLR L  + +  Q      S+
Sbjct: 70  VCKSFLSLKAPVLKSLHLSFRKSVNPVDIGLWIGIAFARHLRELVLYVAPKQTFTFPSSL 129

Query: 125 KVL-TLQNYKLESLGNDDVK----LLSLRKLHLSDV-YADDQVMNNLFAQSPLLQHLEFV 178
            +  TL+  KL    + D+     L SLR LHL  V Y D++ + NL +  P+L++L   
Sbjct: 130 CICNTLETLKLILGIHVDIPCPVLLKSLRTLHLDSVSYKDEESIRNLLSSCPILENLVVY 189

Query: 179 RY-NNLVNVS-SCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN 226
            Y  N+VN      +LK L++CD  +  E+    I  +P L+ L I   N
Sbjct: 190 EYWYNVVNFDIEVPSLKRLEICDVLHKKEFRRYTI-NVPCLKYLRIEGLN 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana GN=At4g26340 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 120/290 (41%), Gaps = 51/290 (17%)

Query: 14  VDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTV 73
           +DRIS L   +L  I+SF+P K VV   ++SK W   W    +LE D     G  K  + 
Sbjct: 1   MDRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHTGDYKSFSQ 60

Query: 74  KTYGS----------EAALNFANRC--------ISYAIERNVEELEVE-HLRRLDTWNSL 114
             Y S             LN    C        I +A+ R + +L++       D   SL
Sbjct: 61  FVYRSLLSNNAPVIKHLHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSSNDASFSL 120

Query: 115 PQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDV-YADDQVMNNLFAQSPLLQ 173
           P  +  S +++ L L N+ L  + +  V L SL+ LHL  V Y DD  + +L    P L+
Sbjct: 121 PSSLYTSDTLETLRLINFVLLDVPS-SVCLPSLKVLHLKTVDYEDDASLPSLLFGCPNLE 179

Query: 174 HLEFVRYNNLVN------VSSCKNLKHLD----LCDGSYTD----EWLN---------SQ 210
            L   R++  +       V S + L  +D     CD    D    ++LN          Q
Sbjct: 180 ELFVERHDQDLEMDVTFVVPSLRRLSMIDKNYGQCDRYVIDVPSLKYLNITDDAVYDVRQ 239

Query: 211 ISGLPLLEQLHISLCNNIESI---TISSLRLKKLIIN----TCESNTIFS 253
           I  +P L + H+ +   +       ++S+R   L ++     C S  IFS
Sbjct: 240 IENMPELVEAHVDITQGVTHKFLRALTSVRQLSLCLSLSEVMCPSGIIFS 289

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ2|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana GN=At5g02930 PE=4 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 104/236 (44%), Gaps = 43/236 (18%)

Query: 13  NVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLT 72
            VD IS LP  +LQ I S++P +  ++  ++SK W   W   P L  + +K    S KL 
Sbjct: 26  GVDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWLKV---SPKLI 82

Query: 73  VKTYGSEAA--LNFANRCISYAIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQ 130
            KT  S  A  +   + C  Y+ E +   +                              
Sbjct: 83  NKTLASYTASKIKSFHLCTRYSYEADTHHV------------------------------ 112

Query: 131 NYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVN--VSS 188
           N  +E   + +V  LSL     S  Y  D    + F  +  L+ +E +RY +L+   + S
Sbjct: 113 NSSIEFAMSHNVDDLSLAFRRCSPFYNFD----DCFYTNSSLKRVE-LRYVDLMPRCMVS 167

Query: 189 CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLII 243
             +LK+L L D + +DE     +SG P+LE L +  C +++ + +S SLRL +L I
Sbjct: 168 WTSLKNLSLTDCTMSDESFLEILSGCPILESLSLKFCMSLKYLNLSKSLRLTRLEI 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM94|FBD21_ARATH FBD-associated F-box protein At5g56370 OS=Arabidopsis thaliana GN=At5g56370 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 115/269 (42%), Gaps = 40/269 (14%)

Query: 14  VDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLE---IDK-------VK 63
           +D IS LP   L  I+S LP K V+   ++SK W   W   P L+   IDK       V+
Sbjct: 1   MDSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWRYLWKLVPKLQYSLIDKNADHGTFVR 60

Query: 64  FLGPSKKLTVKTYGSEAALNFANRC--------ISYAIERNVEELEVEHLRRLDTWNSLP 115
           F+  S  L++        L    +C        +  A+E+ + EL+ ++         LP
Sbjct: 61  FVDRSLLLSMAPVLESLHLKLGRQCSEVDIGFWVRIAVEKGLCELDFDYEHYKTEPCRLP 120

Query: 116 QMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDV-YADDQVMNNLFAQSPLLQH 174
           Q +    ++ VL L+N  L+ +    V    L+ LHL  V + D +    L +  P+L+ 
Sbjct: 121 QSLFTCGTLTVLKLKNVSLKDV-QFPVCFKLLKTLHLEYVIFLDKETPQKLLSSCPILEV 179

Query: 175 LEFVR----YNNLVNVS-SCKNLKHLDLCDGSYTDEWLNS---------------QISGL 214
            +  R     +N+++ S    +L+    C GS  +  +N+                I  L
Sbjct: 180 FDLTRDDDDVDNVMSFSVMVPSLQRFIYCGGSGAELVMNTPSLKYLKLSGCGYECMIGNL 239

Query: 215 PLLEQLHISLCNNIESITISSLRLKKLII 243
           P + + H+ +  + + I  S   +K+L++
Sbjct: 240 PEIVEAHVEVACSTDDILTSLASVKRLLL 268

Arabidopsis thaliana (taxid: 3702)

>sp|Q501E9|FDL20_ARATH F-box/FBD/LRR-repeat protein At3g51530 OS=Arabidopsis thaliana GN=At3g51530 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 101/256 (39%), Gaps = 50/256 (19%)

Query: 15  DRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTVK 74
           DRIS LP+ +L  I+S LP K V+   ++SK WL  W     LE +              
Sbjct: 30  DRISELPEVLLLQILSSLPTKLVISTSVLSKRWLSLWKMVQRLEFE-------------- 75

Query: 75  TYGSEAALNFANRCISYAIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIK------VLT 128
              S    +FA       +      LE  HL+  D ++ +   V  + +        VL 
Sbjct: 76  --SSRNIYDFAENVTRSLLSHKAPVLESLHLKVGDQFDGVYVGVWATIAFTRHVREFVLD 133

Query: 129 LQNY---------------KLESLGND--------DVKLLSLRKLH-LSDVYADDQVMNN 164
           L +Y                LE+L  D         V + SLR LH LS VY  D+  +N
Sbjct: 134 LSSYHGPRVRFPTSLFCFDTLETLKLDYVYIYVPCPVSMKSLRTLHLLSVVYKGDESGHN 193

Query: 165 LFAQSPLLQHLEFVR---YNNLVN-VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQL 220
           LFA  P L+HL   R   ++ +VN +    +LK L L D     E     +   P L+ L
Sbjct: 194 LFASCPNLEHLVLRRGFFFDAVVNFIIDAPSLKTLLLSDPFSARESSRGYVIKAPSLKYL 253

Query: 221 HISLCNNIESITISSL 236
            I      E   I ++
Sbjct: 254 GIESVEGFEYFLIENV 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJF8|FBL47_ARATH F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana GN=At3g26922 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 103/250 (41%), Gaps = 38/250 (15%)

Query: 13  NVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEID------------ 60
           N DRIS LP+ +L  I+S LP K VV   ++SK W   W   P L+ D            
Sbjct: 12  NEDRISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWKLVPTLKFDYENNQSEDETYS 71

Query: 61  ----------KVKFLGPSKKLTVKTYGSEAALNFANRCISYAIERNVEELEVEHLRRLDT 110
                     K  FL   + L +     E         I  A  R+V +L V H+  +  
Sbjct: 72  EIVCRLLLSNKAPFL---ESLHLGFRFGECRSVEVGMWIGIAYARHVRDL-VLHVESVKG 127

Query: 111 WNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDV-YADDQVMNNLFAQS 169
               P  +   ++++ LTL+++ L  + +    L SLR L L +V Y  D  + NL +  
Sbjct: 128 SFIFPTGLYNCETLESLTLRSWVLVDVPSPAC-LKSLRTLRLENVDYKYDDSVYNLLSGC 186

Query: 170 PLLQHLEFVRYNNL------VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHIS 223
           P L++L   R N L      + V S + L   D  DG Y   +    +   P L+ L I 
Sbjct: 187 PNLENLVVYRGNLLEVETFTIAVPSLQRLTIYDDNDGEYCTGY----VINAPSLKYLKID 242

Query: 224 LCNNIESITI 233
               +ES  I
Sbjct: 243 GFKALESCLI 252

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160 OS=Arabidopsis thaliana GN=At4g00160 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 29/223 (13%)

Query: 4   EMCRLKKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVK 63
           E  R++     DRIS LP  +L  I+SFLP K VV   + SK W   W   P+LE D   
Sbjct: 5   ESLRIRVVMGKDRISELPDALLIKILSFLPTKIVVATSVFSKQWRPLWKLVPNLEFDSED 64

Query: 64  FLGPSK----KLTVKTYGSEAALNFANRCISYAIERNVEELEV---------EHLRRL-- 108
           +    +    ++  K++ S  A    +  + +  E+ V+ +++          HLR L  
Sbjct: 65  YDDKEQYTFSEIVCKSFLSHKAPVLESFRLEFESEK-VDPVDIGLWVGIAFSRHLRELVL 123

Query: 109 ---DTWNS----LPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDV-YADDQ 160
              DT        P  +    +++ L L    L  + +  V + SLR LHL  V Y D+ 
Sbjct: 124 VAADTGTGTAFKFPSSLCTCNTLETLRLVLLILVDISS-PVVMKSLRTLHLELVSYKDES 182

Query: 161 VMNNLFAQSPLLQHLEFVRYNN----LVNVSSCKNLKHLDLCD 199
            + NL +  P+L+ L  +R  +    +  +    +LK L + D
Sbjct: 183 SIRNLLSGCPILEELLVIRGEDSDIEVFTIDEVPSLKRLTIND 225

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7M1|FBD2_ARATH Putative FBD-associated F-box protein At1g55030 OS=Arabidopsis thaliana GN=At1g55030 PE=4 SV=1

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 27/244 (11%)

Query: 15  DRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDK----------VKF 64
           D IS LP+P++  I+  LP K  +   ++SK W   W   P LE D            K 
Sbjct: 9   DMISQLPEPLILQILGSLPTKVAITTSVLSKQWQSHWKMMPKLEFDSFLRRLDLENVTKC 68

Query: 65  LGPSKKLTVKTYGSEAALNFANRC------ISYAIERNVEELEVEHLRRLDTWNSLPQMV 118
           L   K   ++T+  +  L+  N        I  A+ RNV +L +E      T+ + P+ +
Sbjct: 69  LLSHKAPVLQTFSLKVRLDRRNNAVDIGCLIGIAMTRNVRKLVLEVYFHRGTF-TFPRSL 127

Query: 119 LRSKSIKVLTL-QNYKLESLGNDDVKLLSLRKLHLSDV-YADDQVMNNLFAQSPLLQHLE 176
              ++++ L L  N  ++      V L SL+ L+L  V + DD+ + NL +  P LQ L 
Sbjct: 128 YHCETLETLELILNVVMDV--PPSVYLKSLKTLYLLAVDFKDDESVINLLSGCPNLQDL- 184

Query: 177 FVRYNNLVNVSS----CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT 232
            +R N+  NV +      +L+ L + +GS T +     I+  P L+ L +      ES  
Sbjct: 185 VMRRNSSSNVKTFTIAVPSLQRLAIHNGSGTPQHCGYTINT-PSLKYLKLEGSKAFESFM 243

Query: 233 ISSL 236
           + ++
Sbjct: 244 VENV 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ4|FBL79_ARATH F-box/LRR-repeat protein At5g02910 OS=Arabidopsis thaliana GN=At5g02910 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 12/160 (7%)

Query: 13  NVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLT 72
            +D IS+LP  IL  I+S +P K  ++  ++SK W   W   P L ID  +    S   T
Sbjct: 9   GMDFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYVWSETPSLSIDCRRADPNSIDKT 68

Query: 73  VKTYGSEAALNF------------ANRCISYAIERNVEELEVEHLRRLDTWNSLPQMVLR 120
           +  + +    +F             N CI +AI  N E+L +E           P     
Sbjct: 69  LSFFSAPKITSFHLHTTLLNRIDSVNGCIEFAISHNAEKLSLESRDYRVRNYKFPDFFYT 128

Query: 121 SKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQ 160
           + S+K L + +  +  +    V   SL+ L LS+    D+
Sbjct: 129 NSSVKQLFVDSGSVHLIPRCTVSWTSLKNLSLSNCTLSDE 168

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.807	0.492	0.340	2e-28
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.807	0.492	0.340	2e-28
224124628	524	f-box family protein [Populus trichocarp	0.832	0.454	0.279	3e-15
297825453	464	hypothetical protein ARALYDRAFT_901029 [	0.646	0.398	0.281	8e-11
357495939	519	FBD-associated F-box protein [Medicago t	0.793	0.437	0.250	1e-10
255553895	516	hypothetical protein RCOM_1176360 [Ricin	0.790	0.437	0.261	1e-10
255563415	501	conserved hypothetical protein [Ricinus	0.727	0.415	0.272	5e-10
147810265	310	hypothetical protein VITISV_027852 [Viti	0.685	0.632	0.274	8e-10
225447425	513	PREDICTED: putative F-box/FBD/LRR-repeat	0.723	0.403	0.263	9e-10
225442254	520	PREDICTED: putative F-box protein At3g44	0.699	0.384	0.274	9e-10

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 148/311 (47%), Gaps = 80/311 (25%)

Query: 14  VDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSK---- 69
           +D IS LP PILQ I+SFL  KQ++Q  ++SK W+  W TFP  E DK  F   SK    
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60

Query: 70  -------------------KLTVKT-YGSEAALNFANRCISYAIERNVEELE----VEHL 105
                              K  + T +    ++   +R I Y +E  V+ELE    VE+ 
Sbjct: 61  RFHLINFVEQTLKQLKCLRKFKLHTDFPEPNSMVVVDRWIDYVLESGVQELEIVVTVENG 120

Query: 106 RRLDTWNSLPQMVLRSKSIKVLTLQNYKL-ESLGNDDVKLLSLRKLHLSDVYADDQVMNN 164
           +R +    LPQ V  ++S+ VLT+ + KL  SL  D  KLLS++ + L  V+A+D+ +  
Sbjct: 121 KRYN----LPQRVFANQSLTVLTVGDCKLCPSL--DGYKLLSMKSVSLLGVFAEDETVKR 174

Query: 165 LFAQSPLLQHL-------------------------------EF-VRYNNL--------- 183
           L +  P +QH+                               EF  +  NL         
Sbjct: 175 LVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEFRGQF 234

Query: 184 ----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLK 239
               +N+SSCKNLK L L   + TD+W N   S  PLLE L +S C+ +ES+ ISS  LK
Sbjct: 235 QPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCHMLESLRISSSHLK 294

Query: 240 KLIINTCESNT 250
           K I+  CES T
Sbjct: 295 KFILCGCESVT 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 148/311 (47%), Gaps = 80/311 (25%)

Query: 14  VDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSK---- 69
           +D IS LP PILQ I+SFL  KQ++Q  ++SK W+  W TFP  E DK  F   SK    
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60

Query: 70  -------------------KLTVKT-YGSEAALNFANRCISYAIERNVEELE----VEHL 105
                              K  + T +    ++   +R I Y +E  V+ELE    VE+ 
Sbjct: 61  RFHLINFVEQTLKQLKCLRKFKLHTDFPEPNSMVVVDRWIDYVLESGVQELEIVVTVENG 120

Query: 106 RRLDTWNSLPQMVLRSKSIKVLTLQNYKL-ESLGNDDVKLLSLRKLHLSDVYADDQVMNN 164
           +R +    LPQ V  ++S+ VLT+ + KL  SL  D  KLLS++ + L  V+A+D+ +  
Sbjct: 121 KRYN----LPQRVFANQSLTVLTVGDCKLCPSL--DGYKLLSMKSVSLLGVFAEDETVKR 174

Query: 165 LFAQSPLLQHL-------------------------------EF-VRYNNL--------- 183
           L +  P +QH+                               EF  +  NL         
Sbjct: 175 LVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEFRGQF 234

Query: 184 ----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLK 239
               +N+SSCKNLK L L   + TD+W N   S  PLLE L +S C+ +ES+ ISS  LK
Sbjct: 235 QPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCHMLESLRISSSHLK 294

Query: 240 KLIINTCESNT 250
           K I+  CES T
Sbjct: 295 KFILCGCESVT 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124628|ref|XP_002319379.1| f-box family protein [Populus trichocarpa] gi|222857755|gb|EEE95302.1| f-box family protein [Populus trichocarpa]

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 135/304 (44%), Gaps = 66/304 (21%)

Query: 5   MCRLKKN---HNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDK 61
           M RL  N     VD IS LP PI+Q IMS LP+K   ++ ++SK +  AW +FP + +D+
Sbjct: 7   MRRLMNNKPIQEVDLISELPDPIIQHIMSSLPYKDAARMSILSKRFASAWTSFPIIFLDE 66

Query: 62  VKFLGPSKKLTVK-------TY-------------------------GSEAALNFANRCI 89
              +G   +LT K       +Y                          SE         I
Sbjct: 67  TLNMGSCLELTGKQKLNSFLSYVGAFLSRRRLDVSLEKFSFCFCLNNSSEQPNGGIENAI 126

Query: 90  SYAIERNVEELEVEHLRR---LDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLS 146
            YAIE NV+ELE++ + +        SLP  VL ++S+ VL+L+ + LE   N  +    
Sbjct: 127 CYAIENNVKELELDFVGKSFKCMAHYSLPMKVLSAQSVMVLSLKGFMLEPPQNLVLDFPF 186

Query: 147 LRKLHLSDVYADDQVMNNLFAQSPLL--------QHLEFVRYN--NL------------- 183
           +++L L         M  L   S  L        Q LE V  +  NL             
Sbjct: 187 IKELRLEKCKG----MQTLSVSSQTLKIVVLESCQRLEKVEIDASNLESFSFGGGANSSC 242

Query: 184 -VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLI 242
            V++++CK+L++L L +   TDEW+  +++    LE   +  C  +E+  +S+  LK + 
Sbjct: 243 SVDITACKSLEYLSLKNAEITDEWIKHEVAQFLRLEVFKVVGCRLLENFHVSNANLKTVE 302

Query: 243 INTC 246
           ++ C
Sbjct: 303 LSDC 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825453|ref|XP_002880609.1| hypothetical protein ARALYDRAFT_901029 [Arabidopsis lyrata subsp. lyrata] gi|297326448|gb|EFH56868.1| hypothetical protein ARALYDRAFT_901029 [Arabidopsis lyrata subsp. lyrata]

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 107/259 (41%), Gaps = 74/259 (28%)

Query: 6   CRLKKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFL 65
           CR  K   VD IS+LP  ILQ I+SF+P K  ++  ++SK W   W   P L +D     
Sbjct: 20  CR--KTEGVDLISSLPDSILQHILSFIPTKLAIRASLLSKRWRHVWCDIPSLSLDDQTLK 77

Query: 66  GPSKKLTVKTYGSEAALNF------------ANRCISYAIERNVEELEVEHLRRLDTWN- 112
             S  +T+  + S   +NF             N+ + +AI RNVE L       LD WN 
Sbjct: 78  DTS--ITLNRFTSLKIMNFHLNTTMKQNIPHINKWVEFAISRNVENLS------LDFWNP 129

Query: 113 ------SLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLF 166
                  +P     + S+K LT+                   KL  +D+      +    
Sbjct: 130 SSSYKFEIPDFFYVNSSVKQLTI-------------------KLSFTDLMVPACSL---- 166

Query: 167 AQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN 226
                                S  +LK L L + + +DE +   +SG+PLLE L +  CN
Sbjct: 167 ---------------------SWTSLKKLYLRNCNLSDESMAKILSGIPLLESLTLYFCN 205

Query: 227 NIESITIS-SLRLKKLIIN 244
            +  + +S SLRL+ L IN
Sbjct: 206 ELRVLDLSKSLRLRTLKIN 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495939|ref|XP_003618258.1| FBD-associated F-box protein [Medicago truncatula] gi|355493273|gb|AES74476.1| FBD-associated F-box protein [Medicago truncatula]

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 131/323 (40%), Gaps = 96/323 (29%)

Query: 15  DRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTVK 74
           D +S LP+ IL  I+S LP K+  +  ++SK WL  W+TFP L     + +G S      
Sbjct: 6   DHLSCLPKIILHCILSKLPEKERTRTSVLSKAWLDTWYTFPILYFHSNQIIGMSPPPMED 65

Query: 75  TYGSEAALNFAN---------RCISYAIER---NVEELEVEHLRR-LDTW---------- 111
           +      L F +         R  S AI++   N+    V ++ + +D W          
Sbjct: 66  SVRKRKILEFGDYVKRRMLMFRDQSLAIKKFRLNLNGFVVRYMSKDVDNWLKLACECGVE 125

Query: 112 ---------------NSLPQMVLRSKSIKVLTLQ-NYKLESL-GNDDVKLLSLRKLHLSD 154
                          + LP  V+ +KS+  L LQ N K++ +  N  +K  SLR+L L+ 
Sbjct: 126 VIQYSQQILEGQEQYHVLPISVIEAKSLTKLVLQGNIKIDPVFMNYSIKFFSLRELSLTR 185

Query: 155 V-YADDQVMNNLFAQSPLLQ-----------------HLEFVRYNNLVNVSS-------- 188
           V + D+  +N L +  PL++                 ++E+V  + L N+ S        
Sbjct: 186 VLFGDEHAINQLISFCPLIEYITLDLCEVLSSGGGTRYMEYVSISGLQNLKSVDVSAIQD 245

Query: 189 ----------------------------CKNLKHLDL--CDGSYTDEWLNSQISGLPLLE 218
                                       C+NLK L L   + + T++W        P LE
Sbjct: 246 VSIDASSLENFCYNTKNYGAPSKIDFDRCRNLKELYLWSVESTSTNKWFLELFPKFPFLE 305

Query: 219 QLHISLCNNIESITISSLRLKKL 241
            L ++ C   + I ISS+RLK+L
Sbjct: 306 SLKLNNCKMPKKIDISSVRLKRL 328

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553895|ref|XP_002517988.1| hypothetical protein RCOM_1176360 [Ricinus communis] gi|223542970|gb|EEF44506.1| hypothetical protein RCOM_1176360 [Ricinus communis]

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 65/291 (22%)

Query: 15  DRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSK----- 69
           D +S L +PIL  IMSFLP K  V+  ++S  +  +W + P ++  K+K  G  +     
Sbjct: 10  DLLSELHEPILHHIMSFLPSKDAVRTSVLSTKFKYSWQSCPTIDF-KLKGYGTDEFLSNV 68

Query: 70  ----------------KLTVKTYGSEAALNFANRCISYAIERNVEELEVEHLRRLD---- 109
                           KL V +Y SE + N  +  I YAI+  V+E++++    +     
Sbjct: 69  HDFIGRRTLGTAIGKLKLRVPSY-SETSNNRLDAVIDYAIQNFVKEVDLDFRNDIPQLYP 127

Query: 110 -------TWNSLPQMVLRSKSIKVLTLQNYKLES----LGNDDVKLLSLRK--------- 149
                  ++  LP  VL SKSI +L L+ +K+      L +  ++ LSL           
Sbjct: 128 TMKDLYFSYYPLPSRVLASKSITILKLKGFKMAPRDLILTSSVLRYLSLEHCTGMESLKV 187

Query: 150 -------LHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV------NVSSCKNLKHLD 196
                  +H+       Q+       +P L+   F+              S+CK+LKHL+
Sbjct: 188 FCDQLSLIHVESCVGPKQIE----LVTPYLETFYFIGEEGSQLELSEDTFSTCKSLKHLN 243

Query: 197 LCDGSYTDEWLNSQIS-GLPLLEQLHISLCNNIESITISSLRLKKLIINTC 246
           L     TD+WL + +S     LE + +S CN ++ + IS   LK   ++ C
Sbjct: 244 LDRVKITDQWLENLVSEDFAFLENVRLSGCNTLKKLMISHSNLKYFELDQC 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563415|ref|XP_002522710.1| conserved hypothetical protein [Ricinus communis] gi|223538060|gb|EEF39672.1| conserved hypothetical protein [Ricinus communis]

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 120/275 (43%), Gaps = 67/275 (24%)

Query: 13  NVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLE------------ID 60
            +DRIS LP PIL  I+  L  K + +   +SK W   W++FPDL+            I 
Sbjct: 26  GIDRISDLPDPILHHILFLLSVKSIARTSTLSKRWRSVWYSFPDLDFTTISTANTLANIS 85

Query: 61  KVKFLG----PSKKLTVK------------------TYGSEAALNFANRCISYAIERNVE 98
           +  FL     P   L++                    + + ++ +  N  I  AI  NV+
Sbjct: 86  QTNFLNTKRPPPHSLSMDFISQVLALRDKHSDLRTLRFRARSSFSCLNGLIRSAIRHNVQ 145

Query: 99  ELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQN----YKL--ESLGNDDVKLLSLRKLHL 152
           EL+VE +   D +N  P+ V+ SK+++VL L++    ++L   S+  D  + L +  L L
Sbjct: 146 ELDVE-VATEDHFN-FPRGVITSKTLRVLKLKSMYPGFRLLPSSVMTDGFRSLQVLSLSL 203

Query: 153 SDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDL-CDGSYTDEWLNSQI 211
             +Y D   + +LF +S       F R   L N+ +C  LKHL + C G           
Sbjct: 204 VILY-DQSSLLDLFTES------SFPRLKKL-NLDACFGLKHLKISCRG----------- 244

Query: 212 SGLPLLEQLHISLCNNIESITISSLRLKKLIINTC 246
                LE L +  C  +  + I   +L KL + +C
Sbjct: 245 -----LEDLTLENCFQLHGLEICCGKLDKLRVASC 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810265|emb|CAN71448.1| hypothetical protein VITISV_027852 [Vitis vinifera]

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 110/251 (43%), Gaps = 55/251 (21%)

Query: 15  DRISALPQPILQLIMSFLPFKQVVQICMVSKVW--LQAWHTFPDLEIDKVKFLGPSKK-L 71
           DRIS LP  IL  I+S LP K++ +  ++SK W  L  + +   L      F    +K  
Sbjct: 6   DRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHSRRKNF 65

Query: 72  TVKTY--GSEAALNFANRCISY------------------------AIERNVEELEVEHL 105
            V ++    +++L    + +S                         A+ER V+EL++  L
Sbjct: 66  DVSSFINAIDSSLRLRQKDVSLARLQLRLHLNDIESESLIDSWIDAALERKVKELDLYLL 125

Query: 106 -RRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNN 164
            R +     LP  +  + +I VL+L+  +LE  G  DV L +LRKL L  +  D+Q +  
Sbjct: 126 PRSIPEPYGLPAKIFSTTTITVLSLEQCRLEICG--DVDLPALRKLCLRKILCDEQAIRQ 183

Query: 165 LFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISL 224
           L +  PL++ L+ V         SC  LK L               +SGL  L +L ++ 
Sbjct: 184 LISSCPLIEDLDIV---------SCGKLKKL--------------HVSGLANLHRLVVTC 220

Query: 225 CNNIESITISS 235
           C N+  I I +
Sbjct: 221 CYNLRRIEIDA 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447425|ref|XP_002276216.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220-like [Vitis vinifera]

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 121/273 (44%), Gaps = 66/273 (24%)

Query: 14  VDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKV----------- 62
           +DRI+ LP  +L  I+  LP K + Q  ++SK W   W +FPDL+   +           
Sbjct: 22  IDRITHLPDAVLHQILLLLPIKTIAQTSVLSKRWRLLWSSFPDLDFTTLNPHCMSCYYFD 81

Query: 63  -----KFLGP--------SKKLTVKTYGSE-------AALNFA--NRCISYAIERNVEEL 100
                  + P        S+ L     GS+       A L F+  N  I  AI  NV++L
Sbjct: 82  SCGGRSSVSPNPNTLDCISQTLAAHQRGSDIRVLRFRAHLGFSRLNGLIRSAIRHNVQDL 141

Query: 101 EVEHLRRLDTWNSLPQMVLRSKSIKVLTLQ----NYKLESLGNDDVKLLSLRKLHLSD-V 155
           +++     D + +LP+ V+ S+S+K L+L+     ++L           SL+ L LS  V
Sbjct: 142 DIDVC--TDDYFNLPRCVVMSESLKALSLKFRPPGFRLPPSMVMRGGFQSLQTLSLSHMV 199

Query: 156 YADDQVMNNLFAQS--PLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISG 213
           +     + +LFA S  P+L+ L          + SC+ +K LD+               G
Sbjct: 200 FYKKHYLLDLFAGSAFPVLRKL---------TLDSCRGIKFLDV---------------G 235

Query: 214 LPLLEQLHISLCNNIESITISSLRLKKLIINTC 246
             +L+ L +  C  +  +T+S  RL++L + +C
Sbjct: 236 CRVLQDLTVENCFQLHGLTVSGPRLERLRVVSC 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 112/255 (43%), Gaps = 55/255 (21%)

Query: 15  DRISALPQPILQLIMSFLPFKQVVQICMVSKVW--LQAWHTFPDLEIDKVKFLGPSKK-L 71
           DRIS LP  IL  I+S LP K++ +  ++SK W  L  + +   L      F    +K  
Sbjct: 6   DRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHSRRKNF 65

Query: 72  TVKTY--GSEAALNFANRCISY------------------------AIERNVEELEVEHL 105
            V ++    +++L    + +S                         A+ER V+EL++  L
Sbjct: 66  DVSSFINAIDSSLRLRQKDVSLARLQLRLHLNDIESESLIDSWIDAALERKVKELDLYLL 125

Query: 106 -RRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNN 164
            R +     LP  +  + +I VL+L+  +LE  G  DV L +LRKL L  +  D+Q +  
Sbjct: 126 PRSIPEPYGLPAKIFSTTTITVLSLEQCRLEICG--DVDLPALRKLCLRKILCDEQAIRQ 183

Query: 165 LFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISL 224
           L +  PL++ L+ V         SC  LK L               +SGL  L +L ++ 
Sbjct: 184 LISSCPLIEDLDIV---------SCGKLKKL--------------HVSGLANLHRLVVTC 220

Query: 225 CNNIESITISSLRLK 239
           C N+  I I +  L+
Sbjct: 221 CYNLRRIEIDAPSLQ 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2081880	455	AT3G51530 "AT3G51530" [Arabido	0.430	0.270	0.321	1.3e-07
TAIR|locus:2136834	419	AT4G26340 "AT4G26340" [Arabido	0.227	0.155	0.369	4.8e-07
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.811	0.508	0.250	7e-07
TAIR|locus:2126911	453	AT4G00160 "AT4G00160" [Arabido	0.199	0.125	0.438	1.2e-06
TAIR|locus:1005716372	441	AT4G00315 "AT4G00315" [Arabido	0.164	0.106	0.382	1.8e-06
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.419	0.262	0.281	2.6e-06
TAIR|locus:2151231	458	AT5G02910 "AT5G02910" [Arabido	0.639	0.399	0.246	3.4e-06
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.167	0.107	0.395	6.1e-06
TAIR|locus:2101791	488	AT3G60790 "AT3G60790" [Arabido	0.846	0.495	0.269	8.4e-06
TAIR|locus:5019474764	306	AT3G26922 "AT3G26922" [Arabido	0.167	0.156	0.458	1.2e-05

TAIR|locus:2081880 AT3G51530 "AT3G51530" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 45/140 (32%), Positives = 63/140 (45%)

Query:   142 VKLLSLRKLHL-SDVYADDQVMNNLFAQSPLLQHLEFVR---YNNLVN-VSSCKNLKHLD 196
             V + SLR LHL S VY  D+  +NLFA  P L+HL   R   ++ +VN +    +LK L 
Sbjct:   170 VSMKSLRTLHLLSVVYKGDESGHNLFASCPNLEHLVLRRGFFFDAVVNFIIDAPSLKTLL 229

Query:   197 LCDGSYTDEWLNSQISGLPLLEQLHIS--------LCNNIESITISSLRLKKLIINTCES 248
             L D     E     +   P L+ L I         L  N+  +  +++R    I+N    
Sbjct:   230 LSDPFSARESSRGYVIKAPSLKYLGIESVEGFEYFLIENVTELVEANIRNVSKIVN---E 286

Query:   249 NTIFSFGSIALFSLALRKPL 268
             N + S  S    SL L  PL
Sbjct:   287 NILGSLKSAKRLSLDL-SPL 305

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2136834 AT4G26340 "AT4G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
 Identities = 24/65 (36%), Positives = 32/65 (49%)

Query:    14 VDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTV 73
             +DRIS L   +L  I+SF+P K VV   ++SK W   W    +LE D     G  K  + 
Sbjct:     1 MDRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHTGDYKSFSQ 60

Query:    74 KTYGS 78
               Y S
Sbjct:    61 FVYRS 65

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 7.0e-07, P = 7.0e-07
 Identities = 64/255 (25%), Positives = 100/255 (39%)

Query:     7 RLKKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLG 66
             R K    VD IS+LP  ILQ I+SF+P K  +   ++SK W   W   P L  +  +   
Sbjct:    23 RRKIKEAVDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEA 82

Query:    67 PSKKLTVKTYGSEAALNF------ANRCISYAIXXXXXXXXXXXXXXXDTWNSL------ 114
             P    T+  Y +   + F       N                      D WN +      
Sbjct:    83 PFIDETLTRYTASKMMRFHLHTSLINNVPHLESWIKFAMSRNVDHLSLDLWNQVANKFKF 142

Query:   115 PQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174
             P     + S+K LT+    L+   +D +  + L+KL+LS     D+ M N+    P+L+ 
Sbjct:   143 PDFFHINSSLKQLTVV---LDF--SDTMIAICLKKLYLSTCLLSDESMANILFGCPILES 197

Query:   175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN-NIESI 231
             L       L  +++S    L+ L++    +  E    QI   P    L +         +
Sbjct:   198 LTLDHCGGLRVLDLSKSLRLRTLEINCNIWVPELTAMQIVA-PHTHCLRLRNSKLPCSLV 256

Query:   232 TISSLRLKKLIINTC 246
              +SSL+  KL  N C
Sbjct:   257 DVSSLKEAKL--NIC 269

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126911 AT4G00160 "AT4G00160" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 25/57 (43%), Positives = 31/57 (54%)

Query:     4 EMCRLKKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEID 60
             E  R++     DRIS LP  +L  I+SFLP K VV   + SK W   W   P+LE D
Sbjct:     5 ESLRIRVVMGKDRISELPDALLIKILSFLPTKIVVATSVFSKQWRPLWKLVPNLEFD 61

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716372 AT4G00315 "AT4G00315" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query:    14 VDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEID 60
             +D+ S LP  +L  ++SFLP K  V+  ++S  W   W   P LE D
Sbjct:     1 MDKTSQLPDELLVKVLSFLPTKDAVRTSLLSMRWKSLWMWLPKLEYD 47

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
 Identities = 36/128 (28%), Positives = 61/128 (47%)

Query:   114 LPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDV-YADDQVMNNLFAQSPLL 172
             +P  +   +++  LTL    L S     V L SL++LHLS V +AD   +  L +Q P+L
Sbjct:   145 MPPTLYTCETLVYLTLDGLSLAS--PKFVSLPSLKELHLSIVKFADHMALETLISQCPVL 202

Query:   173 QHLEFVR-YNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQIS---GLPLLEQLHISLCNNI 228
             ++L   R + +    +  ++   L     + TDE LN  +      P L+ L +S  + I
Sbjct:   203 ENLNINRSFCDDFEFTCVRSQSLLSFTHVADTDEMLNEDLVVAIDAPKLKYLRLS-DHRI 261

Query:   229 ESITISSL 236
              S  ++ L
Sbjct:   262 ASFILNDL 269

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151231 AT5G02910 "AT5G02910" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 49/199 (24%), Positives = 83/199 (41%)

Query:    14 VDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFLGPSKKLTV 73
             +D IS+LP  IL  I+S +P K  ++  ++SK W   W   P L ID  +    S   T+
Sbjct:    10 MDFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYVWSETPSLSIDCRRADPNSIDKTL 69

Query:    74 KTYGSEAALNF------------ANRCISYAIXXXXXXXXXXXXXXXDTWNSLPQMVLRS 121
               + +    +F             N CI +AI                     P     +
Sbjct:    70 SFFSAPKITSFHLHTTLLNRIDSVNGCIEFAISHNAEKLSLESRDYRVRNYKFPDFFYTN 129

Query:   122 KSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFV--- 178
              S+K L + +  +  +    V   SL+ L LS+    D+    + + SPLL+ LE +   
Sbjct:   130 SSVKQLFVDSGSVHLIPRCTVSWTSLKNLSLSNCTLSDESFLKILSGSPLLESLELLYCA 189

Query:   179 RYNNLVNVSSCKNLKHLDL 197
              Y  L ++S  ++L+ L++
Sbjct:   190 EYMCL-DLSQSQHLRRLEI 207

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query:    13 NVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEID 60
             N DRIS LP  +L  I+S LP +  +   ++SK W   W   P L+ D
Sbjct:    11 NEDRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFD 58

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101791 AT3G60790 "AT3G60790" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 75/278 (26%), Positives = 109/278 (39%)

Query:    14 VDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEIDKVKFL--GPSKKL 71
             VDRIS LP  +LQ I+S L  K  V    +SK W+  W   P L +D    +   P+  +
Sbjct:    49 VDRISMLPDEMLQKILSTLSTKDAVITSTLSKRWVDQWKRIPHLCVDMRNIMRTNPTSYV 108

Query:    72 TVKTYG-SEAALNFANRCISYAIXXXXXXXXXXXXXXXDTWNSLPQMVLRSKSIKVLTLQ 130
                ++  +E+     N    + +               D W    Q V R K  K +TL 
Sbjct:   109 HELSFRFAESMTKTLNNHRGH-LESCTISHIQFIFLFIDRWI---QTVTREKQTKEITLV 164

Query:   131 NYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNV-SSC 189
             N    ++G      +    LHLS          + F   P L  L   RY  L     +C
Sbjct:   165 N----NIGCM-TPFVRYNSLHLSP---------SAFCH-PSLTSLSLTRYKLLEKAFKNC 209

Query:   190 KNLKHLDLCDGSYTDEWLNSQISGLPLLEQL--HISLCNNIESITISSLRLKKL------ 241
              NLK L L D       L++ I     LE L   I+  N   ++ I + +L+ L      
Sbjct:   210 CNLKILKLYDIMSDVSVLSNVIKACSSLEVLVLQITFLNQASALKIENKKLEFLQVTWPC 269

Query:   242 IINTCESNT----IFSFGSIALFSLALRKP-LGLASRE 274
             ++N  E NT    IF   SI  F  ++  P L +  R+
Sbjct:   270 LMNRMEVNTPRLVIFDIKSIYCFGYSVEAPKLSMFKRD 307

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:5019474764 AT3G26922 "AT3G26922" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query:    13 NVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDLEID 60
             N DRIS LP+ +L  I+S LP K VV   ++SK W   W   P L+ D
Sbjct:    12 NEDRISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWKLVPTLKFD 59

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.89
KOG4341	483	consensus F-box protein containing LRR [General fu	99.71
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.99
KOG4341	483	consensus F-box protein containing LRR [General fu	98.86
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.79
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.55
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.51
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.5
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.47
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.46
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.43
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.27
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.23
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.22
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.2
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.02
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.37
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.26
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.13
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.12
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.76
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.76
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.76
PRK15386	426	type III secretion protein GogB; Provisional	96.67
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.42
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.41
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.3
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.2
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.18
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.17
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.17
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.08
PLN03150	623	hypothetical protein; Provisional	95.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.83
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.74
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.73
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.71
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	95.57
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.31
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.3
PLN03150	623	hypothetical protein; Provisional	95.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.74
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	94.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.14
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.92
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.34
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.31
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.0
PF13013	109	F-box-like_2: F-box-like domain	92.35
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	92.15
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.35
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	91.27
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	90.76
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	90.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	88.95
KOG0472	565	consensus Leucine-rich repeat protein [Function un	88.82
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	87.04
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	85.79
PRK15386	426	type III secretion protein GogB; Provisional	85.71
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	85.58
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	84.94
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	83.39
KOG4237	498	consensus Extracellular matrix protein slit, conta	82.42
KOG0472	565	consensus Leucine-rich repeat protein [Function un	82.03
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	81.85

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.5e-24  Score=178.30  Aligned_cols=253  Identities=18%  Similarity=0.196  Sum_probs=183.2

Q ss_pred             CCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhccCC---ceEeecCCCCCcchhhhHHHHHHHHHHH----------
Q 042585           17 ISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFP---DLEIDKVKFLGPSKKLTVKTYGSEAALN----------   83 (286)
Q Consensus        17 i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~l~~----------   83 (286)
                      ++.|||||+..|||.|+.|++.+.+.|||||.++-+.-.   .++...+...+        +..-+.+.+          
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p--------~~l~~l~~rgV~v~Rlar~  169 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP--------DVLGRLLSRGVIVFRLARS  169 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh--------hHHHHHHhCCeEEEEcchh
Confidence            789999999999999999999999999999998644433   23444433332        111111111          


Q ss_pred             hHh--HHHHH--HHhCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceee-e
Q 042585           84 FAN--RCISY--AIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVY-A  157 (286)
Q Consensus        84 ~~~--~~~~~--~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~-~  157 (286)
                      +++  +...+  .....++.++++...  .+...+.-.+..|.+|+.|.|.|..++. ...-.+.-.+|+.|+|+.|. +
T Consensus       170 ~~~~prlae~~~~frsRlq~lDLS~s~--it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~  247 (419)
T KOG2120|consen  170 FMDQPRLAEHFSPFRSRLQHLDLSNSV--ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF  247 (419)
T ss_pred             hhcCchhhhhhhhhhhhhHHhhcchhh--eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc
Confidence            111  11111  123457888887211  2455666678899999999999998855 11233456889999999999 9


Q ss_pred             ChHHHHHHHhcCCCcceEEeeeccccce---eec---ccCCceEEecCcc--cChhhHHHHHhcCCCccEEecccccCcc
Q 042585          158 DDQVMNNLFAQSPLLQHLEFVRYNNLVN---VSS---CKNLKHLDLCDGS--YTDEWLNSQISGLPLLEQLHISLCNNIE  229 (286)
Q Consensus       158 ~~~~l~~l~~~cp~Le~L~l~~c~~~~~---~~~---~~~L~~L~l~~~~--~~~~~l~~~~~~~p~L~~L~l~~c~~~~  229 (286)
                      +.++++.+..+|..|.+|++++|.-...   +.+   .++|+.|+++++.  +.+..+..+...||+|.+|++++|-.++
T Consensus       248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence            9999999999999999999999965421   112   8999999999873  6667888999999999999999997776


Q ss_pred             cccc----ccccccEEEeecccCCccccc-cccceeeeccCCCCCcchHHHHHHH
Q 042585          230 SITI----SSLRLKKLIINTCESNTIFSF-GSIALFSLALRKPLGLASREAQDFL  279 (286)
Q Consensus       230 ~~~i----~~p~L~~L~ls~c~~~~~~~~-~~~~l~s~~~~~~~~~~~~~~~~~l  279 (286)
                      +--+    .-+.|++|.++.|+.+....+ .--+.-++.+.+.||..++.+-+++
T Consensus       328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~  382 (419)
T KOG2120|consen  328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELL  382 (419)
T ss_pred             chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHH
Confidence            6322    248999999999998876543 3333456677788898888665544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.71  E-value=1.4e-18  Score=150.17  Aligned_cols=222  Identities=21%  Similarity=0.231  Sum_probs=154.9

Q ss_pred             CCCCHHHHHHHHccCChhhHHHhhhhhhhhHhh------hccCCceEeecCCCCCcchhhhHHHHHHHHHHHhHhHHHHH
Q 042585           18 SALPQPILQLIMSFLPFKQVVQICMVSKVWLQA------WHTFPDLEIDKVKFLGPSKKLTVKTYGSEAALNFANRCISY   91 (286)
Q Consensus        18 ~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   91 (286)
                      -.||+|++..|||+|.++.+++++++|+.|..+      |+.+...+|....-.+         .|..+        +..
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~---------VV~~~--------~~R  135 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGG---------VVENM--------ISR  135 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCc---------ceehH--------hhh
Confidence            459999999999999999999999999999875      6555555444332221         11111        111


Q ss_pred             HHhCCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceee--cc-CCcCcccCCCccEEEcceee-eChHHHHHHH
Q 042585           92 AIERNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKL--ES-LGNDDVKLLSLRKLHLSDVY-ADDQVMNNLF  166 (286)
Q Consensus        92 ~~~~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~--~~-~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~  166 (286)
                       ....++++.+. ...  .....+-.....|+++++|.+.+|..  +. +......|++|+.|+|..|. +++..++.++
T Consensus       136 -cgg~lk~LSlrG~r~--v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la  212 (483)
T KOG4341|consen  136 -CGGFLKELSLRGCRA--VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA  212 (483)
T ss_pred             -hcccccccccccccc--CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence             12456777777 222  34455555666888888888888765  21 22234458888888888888 8888888888


Q ss_pred             hcCCCcceEEeeeccccce-----eec---------------------------ccCCceEEecCc-ccChhhHHHHHhc
Q 042585          167 AQSPLLQHLEFVRYNNLVN-----VSS---------------------------CKNLKHLDLCDG-SYTDEWLNSQISG  213 (286)
Q Consensus       167 ~~cp~Le~L~l~~c~~~~~-----~~~---------------------------~~~L~~L~l~~~-~~~~~~l~~~~~~  213 (286)
                      .+||+|+.|++++|..+..     +..                           ++-+.++++..| .++|..+..+...
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence            8888888888888864311     000                           344555555554 3777777777888


Q ss_pred             CCCccEEecccccCcccccc-----ccccccEEEeecccCCccccccccce
Q 042585          214 LPLLEQLHISLCNNIESITI-----SSLRLKKLIINTCESNTIFSFGSIAL  259 (286)
Q Consensus       214 ~p~L~~L~l~~c~~~~~~~i-----~~p~L~~L~ls~c~~~~~~~~~~~~l  259 (286)
                      |..|+.|.+++|..+++..+     .+++|+.|.+++|+.+++..|+.++-
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r  343 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR  343 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence            88888888888887766544     35899999999999988888776663

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.99  E-value=4.4e-10  Score=69.49  Aligned_cols=37  Identities=30%  Similarity=0.579  Sum_probs=32.1

Q ss_pred             CCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhcc
Q 042585           17 ISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHT   53 (286)
Q Consensus        17 i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~   53 (286)
                      |+.||+|++.+||++|+.+|+.+++.|||+|+++...
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~   37 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND   37 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence            6789999999999999999999999999999986543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.86  E-value=1.3e-10  Score=101.35  Aligned_cols=158  Identities=21%  Similarity=0.255  Sum_probs=112.5

Q ss_pred             CceEEEEEeccCCCcccCCCcchhcc-CCccEEEEeceee---ccCCcCcccCCCccEEEcceee-eChHHHHHHHhcCC
Q 042585           96 NVEELEVEHLRRLDTWNSLPQMVLRS-KSIKVLTLQNYKL---ESLGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSP  170 (286)
Q Consensus        96 ~l~~L~l~~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~---~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp  170 (286)
                      +=+++++...+.+...-.....+.+| ..|++|++.||.-   .........||++++|.+.+|. ++|..+..+...|+
T Consensus       111 ~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~  190 (483)
T KOG4341|consen  111 CWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCR  190 (483)
T ss_pred             cceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcc
Confidence            45666766333222223333445555 5899999999764   2233345679999999999999 99999999999999


Q ss_pred             CcceEEeeeccccceee-----c-ccCCceEEecCcc-cChhhHHHHHhcCCCccEEecccccCccccccc-----cccc
Q 042585          171 LLQHLEFVRYNNLVNVS-----S-CKNLKHLDLCDGS-YTDEWLNSQISGLPLLEQLHISLCNNIESITIS-----SLRL  238 (286)
Q Consensus       171 ~Le~L~l~~c~~~~~~~-----~-~~~L~~L~l~~~~-~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-----~p~L  238 (286)
                      +|+.|++..|...++..     . ||+|++|+++.|. +..++++.+.++|.+|+.+..+||...+.-.+.     .+.+
T Consensus       191 ~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i  270 (483)
T KOG4341|consen  191 KLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI  270 (483)
T ss_pred             hhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence            99999999997764432     2 9999999999874 777788888899999998888888665432221     2344


Q ss_pred             cEEEeecccCCcccc
Q 042585          239 KKLIINTCESNTIFS  253 (286)
Q Consensus       239 ~~L~ls~c~~~~~~~  253 (286)
                      .++++.+|..+|+..
T Consensus       271 ~~lnl~~c~~lTD~~  285 (483)
T KOG4341|consen  271 LKLNLQHCNQLTDED  285 (483)
T ss_pred             hccchhhhccccchH
Confidence            445555565555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=6.3e-10  Score=93.30  Aligned_cols=136  Identities=21%  Similarity=0.127  Sum_probs=94.0

Q ss_pred             HHhCCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeecc---CCcCcccCCCccEEEcceee--eChHHHHHH
Q 042585           92 AIERNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES---LGNDDVKLLSLRKLHLSDVY--ADDQVMNNL  165 (286)
Q Consensus        92 ~~~~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l  165 (286)
                      |-..++++++++ +.+  .+...+.-.+.+|++|..|+|++|....   ......--++|+.|+|++++  +.+..+..+
T Consensus       231 AkN~~L~~lnlsm~sG--~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL  308 (419)
T KOG2120|consen  231 AKNSNLVRLNLSMCSG--FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL  308 (419)
T ss_pred             hccccceeeccccccc--cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH
Confidence            334788888888 322  2455555567789999999999987622   11122237889999999988  778888888


Q ss_pred             HhcCCCcceEEeeeccccce-----eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcc
Q 042585          166 FAQSPLLQHLEFVRYNNLVN-----VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIE  229 (286)
Q Consensus       166 ~~~cp~Le~L~l~~c~~~~~-----~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~  229 (286)
                      ...||+|.+|++++|....+     +..++.|++|.++.|...+.....-....|.|.+|++.||-.-+
T Consensus       309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt  377 (419)
T KOG2120|consen  309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT  377 (419)
T ss_pred             HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCch
Confidence            89999999999998866532     11188888888887753332211224577889999988875443

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.57  E-value=2.2e-08  Score=62.11  Aligned_cols=38  Identities=37%  Similarity=0.608  Sum_probs=31.7

Q ss_pred             cCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhcc
Q 042585           16 RISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHT   53 (286)
Q Consensus        16 ~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~   53 (286)
                      .|++||+|++.+||++|+.+|+.+++.|||+|+++...
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            35789999999999999999999999999999997654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.55  E-value=8e-08  Score=84.08  Aligned_cols=150  Identities=20%  Similarity=0.190  Sum_probs=91.0

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhcc---CCccEEEEeceeecc-----CCcCcccC-CCccEEEcceeeeChHH---
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRS---KSIKVLTLQNYKLES-----LGNDDVKL-LSLRKLHLSDVYADDQV---  161 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~---~~L~~L~L~~~~~~~-----~~~~~~~~-~~L~~L~L~~~~~~~~~---  161 (286)
                      ..++++++++...   .....+..+...   ++|++|++++|.+..     .......+ ++|+.|+|.+|.++...   
T Consensus        80 ~~~L~~L~l~~~~---~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          80 GCGLQELDLSDNA---LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             cCceeEEEccCCC---CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            3578888887222   111222333333   448889998887731     00112345 78899999988855333   


Q ss_pred             HHHHHhcCCCcceEEeeeccccc----eee----cccCCceEEecCcccChhhHH---HHHhcCCCccEEecccccCccc
Q 042585          162 MNNLFAQSPLLQHLEFVRYNNLV----NVS----SCKNLKHLDLCDGSYTDEWLN---SQISGLPLLEQLHISLCNNIES  230 (286)
Q Consensus       162 l~~l~~~cp~Le~L~l~~c~~~~----~~~----~~~~L~~L~l~~~~~~~~~l~---~~~~~~p~L~~L~l~~c~~~~~  230 (286)
                      +......++.|+.|++.+|....    .+.    ..++|++|++.+|.+++....   .....+|+|++|++++|. +++
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~  235 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTD  235 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-Cch
Confidence            33344567788999888765331    111    145889999988877654432   334567889999988874 222


Q ss_pred             ccc---------ccccccEEEeeccc
Q 042585          231 ITI---------SSLRLKKLIINTCE  247 (286)
Q Consensus       231 ~~i---------~~p~L~~L~ls~c~  247 (286)
                      .++         ..+.|++|++++|.
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCC
Confidence            111         12688888888884

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.51  E-value=6e-08  Score=89.60  Aligned_cols=115  Identities=27%  Similarity=0.365  Sum_probs=83.7

Q ss_pred             cCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeec-cccc-------eeec-ccCCceEEecCcc-cChhhHHHHH
Q 042585          143 KLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRY-NNLV-------NVSS-CKNLKHLDLCDGS-YTDEWLNSQI  211 (286)
Q Consensus       143 ~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c-~~~~-------~~~~-~~~L~~L~l~~~~-~~~~~l~~~~  211 (286)
                      .+|+|+.|++.+|. +++.++..+...||.|++|++++| ....       .+.. +++|+.|++..+. +++.++..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            47888888888887 777777778888888888888873 2211       1111 7888888888776 7777777777


Q ss_pred             hcCCCccEEecccccCccccccc-----cccccEEEeecccCCcccccccc
Q 042585          212 SGLPLLEQLHISLCNNIESITIS-----SLRLKKLIINTCESNTIFSFGSI  257 (286)
Q Consensus       212 ~~~p~L~~L~l~~c~~~~~~~i~-----~p~L~~L~ls~c~~~~~~~~~~~  257 (286)
                      ..||+|++|.+.+|..+++.++.     +|+|++|++++|..+++.++..+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~  316 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL  316 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence            77888888887778776665544     47888888888877766544444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.50  E-value=1.8e-08  Score=93.01  Aligned_cols=163  Identities=24%  Similarity=0.293  Sum_probs=109.9

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEece-ee-c-c---CCcCcccCCCccEEEcceee-eChHHHHHHHh
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNY-KL-E-S---LGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFA  167 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~-~-~---~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~  167 (286)
                      ++++++.+..+. ......+-..+..|++|+.|++++| .. . .   .......+++|+.|++.++. ++|.++..++.
T Consensus       188 ~~L~~l~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  188 PLLKRLSLSGCS-KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             chhhHhhhcccc-cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            566666666221 0122224455668899999999873 22 1 1   11234458999999999999 99999999999


Q ss_pred             cCCCcceEEeeeccccceeec------ccCCceEEecCcc-cChhhHHHHHhcCCCccEEecccc---cCccccccc---
Q 042585          168 QSPLLQHLEFVRYNNLVNVSS------CKNLKHLDLCDGS-YTDEWLNSQISGLPLLEQLHISLC---NNIESITIS---  234 (286)
Q Consensus       168 ~cp~Le~L~l~~c~~~~~~~~------~~~L~~L~l~~~~-~~~~~l~~~~~~~p~L~~L~l~~c---~~~~~~~i~---  234 (286)
                      .||+|+.|.+.+|...++.+.      +++|++|++.+|. +++.++..+..+||+|+.|.+.++   ..+++..+.   
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~  346 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL  346 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence            999999999888875433222      8999999999775 557777788888998888776554   445555433   


Q ss_pred             --cc-cccEEEeecccCCccccccccc
Q 042585          235 --SL-RLKKLIINTCESNTIFSFGSIA  258 (286)
Q Consensus       235 --~p-~L~~L~ls~c~~~~~~~~~~~~  258 (286)
                        .+ .+..+.+.+|+.++...+....
T Consensus       347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  347 TLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             ccCchhHhHHHHhcCCCcchhhhhhhh
Confidence              11 5666666777776666555544

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.47  E-value=1.6e-07  Score=55.91  Aligned_cols=34  Identities=35%  Similarity=0.571  Sum_probs=31.7

Q ss_pred             CCHHHHHHHHccCChhhHHHhhhhhhhhHhhhcc
Q 042585           20 LPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHT   53 (286)
Q Consensus        20 LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~   53 (286)
                      ||+|++.+||++++.+|+.+++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=4.4e-08  Score=86.21  Aligned_cols=151  Identities=22%  Similarity=0.265  Sum_probs=103.4

Q ss_pred             CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeeccCC--cCcccCCCccEEEcceeeeChHHHHHHHhcCCC
Q 042585           95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG--NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPL  171 (286)
Q Consensus        95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~  171 (286)
                      .++++|+|+ +..  ..+..+-..+...++|+.|+|+.+.+..+.  .....+++||+|.|..|-++..++..++..||+
T Consensus       146 ~~v~~LdLS~NL~--~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  146 PNVRDLDLSRNLF--HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             CcceeecchhhhH--HhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            466777777 332  133444445567799999999998774321  123359999999999999999999999999999


Q ss_pred             cceEEeeeccccce----eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccC--cc--cc-----ccccccc
Q 042585          172 LQHLEFVRYNNLVN----VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNN--IE--SI-----TISSLRL  238 (286)
Q Consensus       172 Le~L~l~~c~~~~~----~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~--~~--~~-----~i~~p~L  238 (286)
                      |+.|.+........    ..++.+|+.|+++++.+-+..........|.|+.|.++.|.-  +.  ++     ..--|.|
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            99999997643322    223788999999977655433335667888888888877631  11  11     1112677


Q ss_pred             cEEEeeccc
Q 042585          239 KKLIINTCE  247 (286)
Q Consensus       239 ~~L~ls~c~  247 (286)
                      +.|.++..+
T Consensus       304 ~~L~i~~N~  312 (505)
T KOG3207|consen  304 EYLNISENN  312 (505)
T ss_pred             eeeecccCc
Confidence            777766543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.43  E-value=1.4e-07  Score=82.62  Aligned_cols=152  Identities=20%  Similarity=0.130  Sum_probs=101.0

Q ss_pred             CCceEEEEEec-cC--CCcccCCCcchhccCCccEEEEeceeecc-CCcCcccC---CCccEEEcceeeeChHHHHHHH-
Q 042585           95 RNVEELEVEHL-RR--LDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKL---LSLRKLHLSDVYADDQVMNNLF-  166 (286)
Q Consensus        95 ~~l~~L~l~~~-~~--~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~---~~L~~L~L~~~~~~~~~l~~l~-  166 (286)
                      .+++++.+... ..  +.....++..+..+++|+.|++++|.+.. .......+   ++|++|++.++.+++.++..+. 
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            45888888721 10  01112334455678899999999987742 11112223   4599999999997766655443 


Q ss_pred             --hcC-CCcceEEeeecccc----ce----eecccCCceEEecCcccChhhHHHHH---hcCCCccEEecccccCccccc
Q 042585          167 --AQS-PLLQHLEFVRYNNL----VN----VSSCKNLKHLDLCDGSYTDEWLNSQI---SGLPLLEQLHISLCNNIESIT  232 (286)
Q Consensus       167 --~~c-p~Le~L~l~~c~~~----~~----~~~~~~L~~L~l~~~~~~~~~l~~~~---~~~p~L~~L~l~~c~~~~~~~  232 (286)
                        ..+ ++|++|++.+|...    ..    +..+++|+.|++.++.+++..+..+.   ...++|++|++++|.. ++.+
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~  209 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL-TDEG  209 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc-ChHH
Confidence              345 89999999988643    11    11267999999999988876554443   3556999999999842 2221


Q ss_pred             --------cccccccEEEeeccc
Q 042585          233 --------ISSLRLKKLIINTCE  247 (286)
Q Consensus       233 --------i~~p~L~~L~ls~c~  247 (286)
                              -..++|+.|++++|.
T Consensus       210 ~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         210 ASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHHHHHhcccCCCCEEecCCCc
Confidence                    124789999999985

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.30  E-value=3.6e-07  Score=87.56  Aligned_cols=123  Identities=23%  Similarity=0.192  Sum_probs=83.0

Q ss_pred             CCccEEEEeceee--ccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccceeec--ccCCceEE
Q 042585          122 KSIKVLTLQNYKL--ESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSS--CKNLKHLD  196 (286)
Q Consensus       122 ~~L~~L~L~~~~~--~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~--~~~L~~L~  196 (286)
                      .+|++|+++|-..  ..|.. ...-||+|++|.+.+..+...++..+..++|+|+.||++++....-.++  +++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            6888888888443  33322 2334999999999999966666888899999999999998754322333  78888888


Q ss_pred             ecCcccCh-hhHHHHHhcCCCccEEecccccCcccc---------ccccccccEEEeec
Q 042585          197 LCDGSYTD-EWLNSQISGLPLLEQLHISLCNNIESI---------TISSLRLKKLIINT  245 (286)
Q Consensus       197 l~~~~~~~-~~l~~~~~~~p~L~~L~l~~c~~~~~~---------~i~~p~L~~L~ls~  245 (286)
                      +.+-.+.. ..+ .-.....+|+.||++.-.....-         +...|+|+.||.|+
T Consensus       202 mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  202 MRNLEFESYQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             ccCCCCCchhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            87766554 222 44567788888888774332221         11247777777764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.27  E-value=1.3e-06  Score=69.58  Aligned_cols=104  Identities=24%  Similarity=0.174  Sum_probs=45.7

Q ss_pred             ccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc-----ceeecccCCce
Q 042585          120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL-----VNVSSCKNLKH  194 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~-----~~~~~~~~L~~  194 (286)
                      .+.+|+.|+|+++.+... .....+++|++|+++++.+++-+ +.+...||+|++|.+++....     ..+..+|+|+.
T Consensus        40 ~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             T-TT--EEE-TTS--S---TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             hhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            457888899988888443 44556888999999888855421 123356889999988754322     22333888888


Q ss_pred             EEecCcccChh-h-HHHHHhcCCCccEEecccc
Q 042585          195 LDLCDGSYTDE-W-LNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       195 L~l~~~~~~~~-~-l~~~~~~~p~L~~L~l~~c  225 (286)
                      |++.++.+++. . -..+...+|+|+.|+-...
T Consensus       118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             EE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             eeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            88887766542 2 2355678888888886654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.23  E-value=3.8e-06  Score=84.67  Aligned_cols=59  Identities=17%  Similarity=0.179  Sum_probs=25.1

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceee
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVY  156 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~  156 (286)
                      .++++|+++...   ....+|..+.++++|++|+|++|.+.. .+.....+++|++|+|.++.
T Consensus       164 ~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        164 SSLKVLDLGGNV---LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             CCCCEEECccCc---ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            455666665111   112344444455555555555544421 11122234444444444443

>PLN03210 Resistant to P

Probab=98.22  E-value=1.8e-06  Score=88.26  Aligned_cols=130  Identities=18%  Similarity=0.256  Sum_probs=78.1

Q ss_pred             CCccEEEEeceee-ccCCcCcccCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeeccccceeec-ccCCceEEec
Q 042585          122 KSIKVLTLQNYKL-ESLGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSS-CKNLKHLDLC  198 (286)
Q Consensus       122 ~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~-~~~L~~L~l~  198 (286)
                      ++|+.|+|++|.. ..++....++++|+.|+|.+|. +..  +... ..+++|+.|++++|.....+.. .++|+.|++.
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~--LP~~-~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls  854 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET--LPTG-INLESLESLDLSGCSRLRTFPDISTNISDLNLS  854 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe--eCCC-CCccccCEEECCCCCccccccccccccCEeECC
Confidence            3455555555432 1121223446666666666664 321  1110 1356666667666655444333 5677777777


Q ss_pred             CcccChhhHHHHHhcCCCccEEecccccCccccccc---cccccEEEeecccCCccccccc
Q 042585          199 DGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS---SLRLKKLIINTCESNTIFSFGS  256 (286)
Q Consensus       199 ~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~---~p~L~~L~ls~c~~~~~~~~~~  256 (286)
                      ++.+..  +..-...+++|++|++.+|.++..+...   .+.|+.+++++|..++...+.+
T Consensus       855 ~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~  913 (1153)
T PLN03210        855 RTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNG  913 (1153)
T ss_pred             CCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCC
Confidence            665543  1123467899999999999988877654   3678888999999887665544

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.20  E-value=3.9e-06  Score=84.54  Aligned_cols=128  Identities=23%  Similarity=0.213  Sum_probs=69.8

Q ss_pred             cCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCCceEE
Q 042585          121 SKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNLKHLD  196 (286)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L~~L~  196 (286)
                      +++|+.|++++|.+....+.....++|++|+|+++.++... ...+..+++|+.|++++|....    .+..+++|+.|+
T Consensus       451 l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  529 (968)
T PLN00113        451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV-PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD  529 (968)
T ss_pred             CCCCcEEECcCceeeeecCcccccccceEEECcCCccCCcc-ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence            34444444444444221122233455556666555532211 1123456777777777664332    222367888888


Q ss_pred             ecCcccChhhHHHHHhcCCCccEEecccccCcccccc---ccccccEEEeecccCCc
Q 042585          197 LCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITI---SSLRLKKLIINTCESNT  250 (286)
Q Consensus       197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i---~~p~L~~L~ls~c~~~~  250 (286)
                      +++|.++.... .....+++|+.|++++|.....+.-   ..+.|+.|++++|....
T Consensus       530 Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        530 LSHNQLSGQIP-ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CCCCcccccCC-hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            88776553211 3345678888888888765433321   13578888888876544

>PLN03210 Resistant to P

Probab=98.12  E-value=6.2e-06  Score=84.31  Aligned_cols=119  Identities=23%  Similarity=0.289  Sum_probs=48.7

Q ss_pred             CCccEEEEeceeeccCCcCcccCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeeccccceeec----ccCCceEE
Q 042585          122 KSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSS----CKNLKHLD  196 (286)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~----~~~L~~L~  196 (286)
                      .+|+.|++.++.+...+.....+++|+.|+|+++. +..-  .. ...+++|+.|++.+|.....+..    +++|+.|+
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i--p~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI--PD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcC--Cc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            44555555554443322233345555555555443 2110  01 23355555555555543322211    45555555


Q ss_pred             ecCcccChhhHHHHHhcCCCccEEecccccCccccccccccccEEEeec
Q 042585          197 LCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINT  245 (286)
Q Consensus       197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~~p~L~~L~ls~  245 (286)
                      +.+|..... + .....+++|++|++++|..+..+.-..++|+.|++++
T Consensus       688 L~~c~~L~~-L-p~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~  734 (1153)
T PLN03210        688 MSRCENLEI-L-PTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE  734 (1153)
T ss_pred             CCCCCCcCc-c-CCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCC
Confidence            554421110 0 0111445555555555544333322223444444433

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=1.9e-06  Score=76.09  Aligned_cols=131  Identities=21%  Similarity=0.183  Sum_probs=94.8

Q ss_pred             ccCCccEEEEeceeeccCC--cCcccCCCccEEEcceeee-ChHHHHHHHhcCCCcceEEeeecccc----ceee-cccC
Q 042585          120 RSKSIKVLTLQNYKLESLG--NDDVKLLSLRKLHLSDVYA-DDQVMNNLFAQSPLLQHLEFVRYNNL----VNVS-SCKN  191 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~-~~~~  191 (286)
                      +.++|+.+.|.++.+....  .....||+++.|+|+.+-+ .-..+..++...|+||.|+++.....    .... ..++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4578888899998884421  2345699999999999984 44568889999999999999864322    2222 2899


Q ss_pred             CceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc---cccccEEEeecccCCc
Q 042585          192 LKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS---SLRLKKLIINTCESNT  250 (286)
Q Consensus       192 L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~---~p~L~~L~ls~c~~~~  250 (286)
                      ||.|.+..|.++-..+..+...+|+|+.|.+.+......-...   ...|+.|+|++....+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~  260 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID  260 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence            9999999999998888899999999999999986421111100   1356666666655444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.02  E-value=2e-06  Score=68.39  Aligned_cols=126  Identities=21%  Similarity=0.233  Sum_probs=46.0

Q ss_pred             hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc---eee-cccCCc
Q 042585          118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV---NVS-SCKNLK  193 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~---~~~-~~~~L~  193 (286)
                      ..++.+++.|+|.++.+.........+.+|+.|+|+++.++.  ++. +..++.|++|++++.....   .+. .+|+|+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            345667899999998884432333458899999999999543  222 3458999999998654321   122 289999


Q ss_pred             eEEecCcccCh-hhHHHHHhcCCCccEEecccccCccc-----ccc-ccccccEEEeeccc
Q 042585          194 HLDLCDGSYTD-EWLNSQISGLPLLEQLHISLCNNIES-----ITI-SSLRLKKLIINTCE  247 (286)
Q Consensus       194 ~L~l~~~~~~~-~~l~~~~~~~p~L~~L~l~~c~~~~~-----~~i-~~p~L~~L~ls~c~  247 (286)
                      .|.+.++.+.+ +.+ .....+|+|+.|++.|++-...     ..+ ..|+|+.||-..+.
T Consensus        92 ~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   92 ELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             EEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence            99999887654 222 3345899999999999653221     112 25999999877664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.96  E-value=1.7e-05  Score=68.34  Aligned_cols=153  Identities=20%  Similarity=0.283  Sum_probs=91.5

Q ss_pred             CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeeccC--C------------cCcccCCCccEEEcceeeeCh
Q 042585           95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL--G------------NDDVKLLSLRKLHLSDVYADD  159 (286)
Q Consensus        95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~------------~~~~~~~~L~~L~L~~~~~~~  159 (286)
                      +.++.++|+ +...+.....+...+.+|.+|++|.|.+|.+...  .            .....-|.|+++...++++.+
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            378999998 4433344455556677899999999999887210  0            012345678888888888433


Q ss_pred             ---HHHHHHHhcCCCcceEEeeecccc--------ceeecccCCceEEecCcccChhh---HHHHHhcCCCccEEecccc
Q 042585          160 ---QVMNNLFAQSPLLQHLEFVRYNNL--------VNVSSCKNLKHLDLCDGSYTDEW---LNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       160 ---~~l~~l~~~cp~Le~L~l~~c~~~--------~~~~~~~~L~~L~l~~~~~~~~~---l~~~~~~~p~L~~L~l~~c  225 (286)
                         ..+...+..+|.|+++.+......        ..+.-||+|+.|++.++.++..+   +.......|+|+.|.+++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence               334555667788888877644321        11112788888888776665433   2222334556777777777


Q ss_pred             cCc--------cccccccccccEEEeeccc
Q 042585          226 NNI--------ESITISSLRLKKLIINTCE  247 (286)
Q Consensus       226 ~~~--------~~~~i~~p~L~~L~ls~c~  247 (286)
                      ---        ..+.-.+|.|+.|.+.+|.
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcch
Confidence            211        1112225677777777663

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.68  E-value=1.1e-05  Score=73.92  Aligned_cols=13  Identities=31%  Similarity=0.314  Sum_probs=5.7

Q ss_pred             CCCccEEEcceee
Q 042585          144 LLSLRKLHLSDVY  156 (286)
Q Consensus       144 ~~~L~~L~L~~~~  156 (286)
                      +++|+.|+|+++.
T Consensus       316 tqkL~~LdLs~N~  328 (873)
T KOG4194|consen  316 TQKLKELDLSSNR  328 (873)
T ss_pred             cccceeEeccccc
Confidence            4444444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.40  E-value=5.2e-05  Score=72.96  Aligned_cols=105  Identities=26%  Similarity=0.201  Sum_probs=61.2

Q ss_pred             ccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEE
Q 042585          120 RSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLD  196 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~  196 (286)
                      ..++|+.|+|+.+.+..++. ...+++.|+.|.|+++.++.-.  .-+..|+.|+.|...+....  ..+..+|+|+.++
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp--~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lD  458 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP--DTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLD  458 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh--HHHHhhhhhHHHhhcCCceeechhhhhcCcceEEe
Confidence            44666666666665543322 2234666666666666533211  22345777777766533211  2333389999999


Q ss_pred             ecCcccChhhHHHHHhcCCCccEEecccccC
Q 042585          197 LCDGSYTDEWLNSQISGLPLLEQLHISLCNN  227 (286)
Q Consensus       197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~  227 (286)
                      ++.+.++...+ .....-|+|++|+++|.+.
T Consensus       459 lS~N~L~~~~l-~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  459 LSCNNLSEVTL-PEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             cccchhhhhhh-hhhCCCcccceeeccCCcc
Confidence            99877665422 2223337999999999765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.37  E-value=0.00012  Score=63.16  Aligned_cols=127  Identities=19%  Similarity=0.181  Sum_probs=62.5

Q ss_pred             CCccEEEEeceeeccC-----CcCcccCCCccEEEcceeeeChHHH---HHHHhcCCCcceEEeeecccc--------ce
Q 042585          122 KSIKVLTLQNYKLESL-----GNDDVKLLSLRKLHLSDVYADDQVM---NNLFAQSPLLQHLEFVRYNNL--------VN  185 (286)
Q Consensus       122 ~~L~~L~L~~~~~~~~-----~~~~~~~~~L~~L~L~~~~~~~~~l---~~l~~~cp~Le~L~l~~c~~~--------~~  185 (286)
                      +.|+++...++++...     .......|.|+.+++..+.+...++   ..-+..||+|+.|+|.+....        ..
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            4555555555555221     0112235566666666666443333   222345666666666654332        11


Q ss_pred             eecccCCceEEecCcccChhh----HHHHHhcCCCccEEecccccCccccc----cc---cccccEEEeecccC
Q 042585          186 VSSCKNLKHLDLCDGSYTDEW----LNSQISGLPLLEQLHISLCNNIESIT----IS---SLRLKKLIINTCES  248 (286)
Q Consensus       186 ~~~~~~L~~L~l~~~~~~~~~----l~~~~~~~p~L~~L~l~~c~~~~~~~----i~---~p~L~~L~ls~c~~  248 (286)
                      +...|+|+.|++.+|.+.+.+    +..+....|+|+.|.+.+|.--.+-.    ++   -|.|+.|.+++|+.
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            112456666666666544432    33444456677777766653211110    00   26677777776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=5.3e-05  Score=60.65  Aligned_cols=90  Identities=23%  Similarity=0.245  Sum_probs=62.2

Q ss_pred             ccCCCcchhccCCccEEEEeceee-ccCCcCcccCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeeccccceeec
Q 042585          111 WNSLPQMVLRSKSIKVLTLQNYKL-ESLGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSS  188 (286)
Q Consensus       111 ~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~  188 (286)
                      .+.+|..-..--.++.++=+++.+ .........++.++.|++.+|. ++|+.++.+....|+|++|++++|..+++.+.
T Consensus        90 ~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL  169 (221)
T KOG3864|consen   90 YFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL  169 (221)
T ss_pred             eecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence            345664433333455555555444 2222344568889999999999 99999999988899999999999877655443


Q ss_pred             -----ccCCceEEecCc
Q 042585          189 -----CKNLKHLDLCDG  200 (286)
Q Consensus       189 -----~~~L~~L~l~~~  200 (286)
                           +++|+.|.+.+-
T Consensus       170 ~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  170 ACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             HHHHHhhhhHHHHhcCc
Confidence                 677777777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.13  E-value=0.00039  Score=67.03  Aligned_cols=157  Identities=17%  Similarity=0.184  Sum_probs=90.8

Q ss_pred             HHHHHhCCceEEEEEeccCCCcccCCCcchh-ccCCccEEEEeceee--ccCCcCcccCCCccEEEcceeeeChHHHHHH
Q 042585           89 ISYAIERNVEELEVEHLRRLDTWNSLPQMVL-RSKSIKVLTLQNYKL--ESLGNDDVKLLSLRKLHLSDVYADDQVMNNL  165 (286)
Q Consensus        89 ~~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l  165 (286)
                      +......++++|++....  .....+|..++ .+|+|++|.+.+-.+  +.+.....+||+|..|+++++.+++-   .-
T Consensus       116 Ln~~sr~nL~~LdI~G~~--~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~G  190 (699)
T KOG3665|consen  116 LNEESRQNLQHLDISGSE--LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SG  190 (699)
T ss_pred             HhHHHHHhhhhcCccccc--hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HH
Confidence            344445688888887110  01223333333 468999999988555  22333455799999999999886553   33


Q ss_pred             HhcCCCcceEEeeecccc-----ceeecccCCceEEecCcccChhh--HH---HHHhcCCCccEEecccccCcc----cc
Q 042585          166 FAQSPLLQHLEFVRYNNL-----VNVSSCKNLKHLDLCDGSYTDEW--LN---SQISGLPLLEQLHISLCNNIE----SI  231 (286)
Q Consensus       166 ~~~cp~Le~L~l~~c~~~-----~~~~~~~~L~~L~l~~~~~~~~~--l~---~~~~~~p~L~~L~l~~c~~~~----~~  231 (286)
                      .+.-++|+.|.+.+-...     .++-.+.+|+.|+++.....+..  +.   .-...+|+|+.|+.+|.+--.    .+
T Consensus       191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l  270 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL  270 (699)
T ss_pred             HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence            456788888877653322     22333888999999854333221  11   112357899999988843211    11


Q ss_pred             ccccccccEEEeecccCCc
Q 042585          232 TISSLRLKKLIINTCESNT  250 (286)
Q Consensus       232 ~i~~p~L~~L~ls~c~~~~  250 (286)
                      -..-|+|+.+..-+|....
T Consensus       271 l~sH~~L~~i~~~~~~~~~  289 (699)
T KOG3665|consen  271 LNSHPNLQQIAALDCLALS  289 (699)
T ss_pred             HHhCccHhhhhhhhhhccc
Confidence            1234666666544443333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.12  E-value=0.00033  Score=64.66  Aligned_cols=86  Identities=17%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             chhccCCccEEEEeceeeccCCcCccc-CCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccC
Q 042585          117 MVLRSKSIKVLTLQNYKLESLGNDDVK-LLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKN  191 (286)
Q Consensus       117 ~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~  191 (286)
                      .+.+.++|+.+++..+.+... |...+ ..+|++|.|.++.++.-.-+. ++..|.||.|+|+.....    ..+...++
T Consensus        97 ~f~nl~nLq~v~l~~N~Lt~I-P~f~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~~sfp~~~n  174 (873)
T KOG4194|consen   97 FFYNLPNLQEVNLNKNELTRI-PRFGHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPKPSFPAKVN  174 (873)
T ss_pred             HHhcCCcceeeeeccchhhhc-ccccccccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence            456778888888888777443 33333 556888888877733322222 234677777777753221    22333566


Q ss_pred             CceEEecCcccCh
Q 042585          192 LKHLDLCDGSYTD  204 (286)
Q Consensus       192 L~~L~l~~~~~~~  204 (286)
                      +++|+++++.+++
T Consensus       175 i~~L~La~N~It~  187 (873)
T KOG4194|consen  175 IKKLNLASNRITT  187 (873)
T ss_pred             ceEEeeccccccc
Confidence            7777777666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.02  E-value=1.4e-05  Score=62.42  Aligned_cols=61  Identities=26%  Similarity=0.339  Sum_probs=29.8

Q ss_pred             CCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEee
Q 042585          114 LPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFV  178 (286)
Q Consensus       114 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~  178 (286)
                      .|+.+....+|++|++.++.++.+++...++|.|+.|++..++  +...+    +.++|.||.|++.
T Consensus        48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg----fgs~p~levldlt  110 (264)
T KOG0617|consen   48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG----FGSFPALEVLDLT  110 (264)
T ss_pred             cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc----cCCCchhhhhhcc
Confidence            3444445555555555555554443444445555555555444  12222    2335555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.95  E-value=0.00031  Score=45.56  Aligned_cols=57  Identities=25%  Similarity=0.292  Sum_probs=27.5

Q ss_pred             CccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeec
Q 042585          123 SIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRY  180 (286)
Q Consensus       123 ~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c  180 (286)
                      +|++|.+++|.+....+ ...++++|++|+++++.++.-.- ..+..+|+|+.|+++++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCC
Confidence            45666666655533222 23346666666666555321111 12344556666655543

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.84  E-value=0.00017  Score=67.02  Aligned_cols=124  Identities=19%  Similarity=0.228  Sum_probs=77.4

Q ss_pred             CCceEEEEEeccCCCcccCCCcchh-ccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVL-RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      ++.-.|+|++..    -..+|..++ +...|-.|+|+++.++.++|-...+.+|++|.|+++.+....+++ +.+..+|+
T Consensus       126 Kn~iVLNLS~N~----IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~  200 (1255)
T KOG0444|consen  126 KNSIVLNLSYNN----IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLS  200 (1255)
T ss_pred             cCcEEEEcccCc----cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhh
Confidence            566677777221    234555443 556777788888888776566667888888888888866666655 34455666


Q ss_pred             eEEeeecccc-----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          174 HLEFVRYNNL-----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       174 ~L~l~~c~~~-----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      .|++++-.-.     +.+..+.+|..++++.++...-  -.-....++|+.|++++.
T Consensus       201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v--Pecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV--PECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             hhhcccccchhhcCCCchhhhhhhhhccccccCCCcc--hHHHhhhhhhheeccCcC
Confidence            6777653211     2222267777777776654431  133456677888887774

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.80  E-value=0.0025  Score=62.19  Aligned_cols=54  Identities=24%  Similarity=0.265  Sum_probs=29.0

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY  156 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~  156 (286)
                      ..+-..|+++...    -..+|..+.  ++|+.|.+.++.+..+ |  ...++|++|+|+++.
T Consensus       200 ~~~~~~LdLs~~~----LtsLP~~l~--~~L~~L~L~~N~Lt~L-P--~lp~~Lk~LdLs~N~  253 (788)
T PRK15387        200 NNGNAVLNVGESG----LTTLPDCLP--AHITTLVIPDNNLTSL-P--ALPPELRTLEVSGNQ  253 (788)
T ss_pred             cCCCcEEEcCCCC----CCcCCcchh--cCCCEEEccCCcCCCC-C--CCCCCCcEEEecCCc
Confidence            3455667666211    124555443  3567777766665432 1  124667777776665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.76  E-value=0.0012  Score=42.82  Aligned_cols=14  Identities=43%  Similarity=0.441  Sum_probs=6.6

Q ss_pred             hcCCCccEEecccc
Q 042585          212 SGLPLLEQLHISLC  225 (286)
Q Consensus       212 ~~~p~L~~L~l~~c  225 (286)
                      .++|+|++|++++|
T Consensus        46 ~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   46 SNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTSTTESEEEETSS
T ss_pred             cCCCCCCEEeCcCC
Confidence            44445555554443

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.76  E-value=0.00015  Score=69.99  Aligned_cols=119  Identities=24%  Similarity=0.240  Sum_probs=75.3

Q ss_pred             CCccEEEEeceee-ccCCcCcccCCCccEEEcceee---eChHHHHHHHhcCCCcceEEeeecccc---ceeecccCCce
Q 042585          122 KSIKVLTLQNYKL-ESLGNDDVKLLSLRKLHLSDVY---ADDQVMNNLFAQSPLLQHLEFVRYNNL---VNVSSCKNLKH  194 (286)
Q Consensus       122 ~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~~---~~~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~~~~~L~~  194 (286)
                      +.|+.|.+.++.+ +..+|...++++||.|+|++++   +.+..+    ...+.||+|++++..-.   ..+..++.|+.
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~~Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNKLTTLPDTVANLGRLHT  434 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH----hchHHhHHHhcccchhhhhhHHHHhhhhhHH
Confidence            4556666666666 3344667778888888888886   333333    34677888888765322   22233777777


Q ss_pred             EEecCcccChhhHHHHHhcCCCccEEecccccCccccccc----cccccEEEeecccC
Q 042585          195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS----SLRLKKLIINTCES  248 (286)
Q Consensus       195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~----~p~L~~L~ls~c~~  248 (286)
                      |....+.+.-  + .-....|.|+.++++. -++..+.+-    .|+|+.|++++...
T Consensus       435 L~ahsN~l~~--f-Pe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  435 LRAHSNQLLS--F-PELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HhhcCCceee--c-hhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence            7776554321  1 2345788899999965 334333322    38999999999874

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.76  E-value=0.00058  Score=58.75  Aligned_cols=42  Identities=31%  Similarity=0.410  Sum_probs=38.3

Q ss_pred             ccCCCcccCCCCC----HHHHHHHHccCChhhHHHhhhhhhhhHhh
Q 042585            9 KKNHNVDRISALP----QPILQLIMSFLPFKQVVQICMVSKVWLQA   50 (286)
Q Consensus         9 ~~~~~~d~i~~LP----deil~~Ils~L~~~d~~~~~~vskrW~~l   50 (286)
                      +.|-..|.|+.||    |++...|||||...+++.|..|||+|+++
T Consensus        67 rpmLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   67 KPMLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            4555789999999    99999999999999999999999999873

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.67  E-value=0.003  Score=56.85  Aligned_cols=132  Identities=17%  Similarity=0.157  Sum_probs=74.8

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceee-ccCCcCcccCCCccEEEcceee-eChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKL-ESLGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~L  172 (286)
                      .++++|+++.+.    -..+|.   --.+|++|.+++|.- ... +.. -.++|++|++++|. +.        .--+.|
T Consensus        52 ~~l~~L~Is~c~----L~sLP~---LP~sLtsL~Lsnc~nLtsL-P~~-LP~nLe~L~Ls~Cs~L~--------sLP~sL  114 (426)
T PRK15386         52 RASGRLYIKDCD----IESLPV---LPNELTEITIENCNNLTTL-PGS-IPEGLEKLTVCHCPEIS--------GLPESV  114 (426)
T ss_pred             cCCCEEEeCCCC----CcccCC---CCCCCcEEEccCCCCcccC-Cch-hhhhhhheEccCccccc--------cccccc
Confidence            677788887221    223331   124688888888644 221 211 13578999998885 43        123568


Q ss_pred             ceEEeeeccccceeec-ccCCceEEecCcccChhhHHHHH-hcCCCccEEecccccCccccccccccccEEEeecc
Q 042585          173 QHLEFVRYNNLVNVSS-CKNLKHLDLCDGSYTDEWLNSQI-SGLPLLEQLHISLCNNIESITISSLRLKKLIINTC  246 (286)
Q Consensus       173 e~L~l~~c~~~~~~~~-~~~L~~L~l~~~~~~~~~l~~~~-~~~p~L~~L~l~~c~~~~~~~i~~p~L~~L~ls~c  246 (286)
                      +.|++. +.....+.. .++|+.|.+.+......  ..+. .-.++|++|.+.+|.....-..--..|+.|.++.+
T Consensus       115 e~L~L~-~n~~~~L~~LPssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        115 RSLEIK-GSATDSIKNVPNGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE  187 (426)
T ss_pred             ceEEeC-CCCCcccccCcchHhheeccccccccc--cccccccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence            888876 333334444 67888888864321100  0111 23368999999998755311111147888888764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.00069  Score=54.41  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=48.5

Q ss_pred             ccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccce-----eec-ccCCceEEecCc-ccChhhHHHHHhcCCCccE
Q 042585          147 LRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVN-----VSS-CKNLKHLDLCDG-SYTDEWLNSQISGLPLLEQ  219 (286)
Q Consensus       147 L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~-----~~~-~~~L~~L~l~~~-~~~~~~l~~~~~~~p~L~~  219 (286)
                      ++.++-+++.+...+++. +..++.++.|.+.+|....+     ++. .|+|+.|.|++| .+++.++ ......++|+.
T Consensus       103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~  180 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRR  180 (221)
T ss_pred             EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHH
Confidence            556666666677777877 45678888888877755322     111 566666666655 3555554 44455666666


Q ss_pred             EecccccCc
Q 042585          220 LHISLCNNI  228 (286)
Q Consensus       220 L~l~~c~~~  228 (286)
                      |.+.+-+.+
T Consensus       181 L~l~~l~~v  189 (221)
T KOG3864|consen  181 LHLYDLPYV  189 (221)
T ss_pred             HHhcCchhh
Confidence            666654433

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.41  E-value=0.0027  Score=33.46  Aligned_cols=24  Identities=29%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             CCCccEEEcceee-eChHHHHHHHh
Q 042585          144 LLSLRKLHLSDVY-ADDQVMNNLFA  167 (286)
Q Consensus       144 ~~~L~~L~L~~~~-~~~~~l~~l~~  167 (286)
                      ||+|++|+|++|. ++|.++..+..
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            6889999999999 99999988764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.41  E-value=0.0016  Score=54.24  Aligned_cols=105  Identities=28%  Similarity=0.300  Sum_probs=71.6

Q ss_pred             ccCCccEEEEeceeeccCCcCcccCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeecccc--ceeec---ccCCc
Q 042585          120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSS---CKNLK  193 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~---~~~L~  193 (286)
                      ....|+.|++.++.+..+ ...-.+|+||+|.++.+. -...++..++..||+|..|++++....  ..+..   .++|+
T Consensus        41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            455667777777666332 233457899999999885 333457777888999999999865432  22222   77888


Q ss_pred             eEEecCcccCh--hhHHHHHhcCCCccEEecccc
Q 042585          194 HLDLCDGSYTD--EWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       194 ~L~l~~~~~~~--~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      .|.+.+|..+.  +.=..+..-+|+|++|+=.++
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            88888887553  223466678899999886654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.30  E-value=0.0082  Score=58.64  Aligned_cols=52  Identities=21%  Similarity=0.274  Sum_probs=31.8

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY  156 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~  156 (286)
                      .+++.|.+...    .-..+|..   .++|++|+++++.+... |  ...++|++|+|.++.
T Consensus       222 ~~L~~L~L~~N----~Lt~LP~l---p~~Lk~LdLs~N~LtsL-P--~lp~sL~~L~Ls~N~  273 (788)
T PRK15387        222 AHITTLVIPDN----NLTSLPAL---PPELRTLEVSGNQLTSL-P--VLPPGLLELSIFSNP  273 (788)
T ss_pred             cCCCEEEccCC----cCCCCCCC---CCCCcEEEecCCccCcc-c--CcccccceeeccCCc
Confidence            35677777611    12234432   47889999988877542 2  124677888777765

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.20  E-value=0.0062  Score=32.08  Aligned_cols=25  Identities=36%  Similarity=0.700  Sum_probs=21.9

Q ss_pred             CccEEEcceee-eChHHHHHHHhcCC
Q 042585          146 SLRKLHLSDVY-ADDQVMNNLFAQSP  170 (286)
Q Consensus       146 ~L~~L~L~~~~-~~~~~l~~l~~~cp  170 (286)
                      +||+|+|..+. .++..++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            58999999999 56668999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.18  E-value=0.004  Score=61.81  Aligned_cols=59  Identities=17%  Similarity=0.134  Sum_probs=37.9

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY  156 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~  156 (286)
                      +.++.|+++...   ....+|..+...-+|++|+|+++.+..++.....+..|.+|++..+.
T Consensus       571 ~~LrVLDLs~~~---~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  571 PLLRVLDLSGNS---SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG  629 (889)
T ss_pred             cceEEEECCCCC---ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccc
Confidence            567777777322   45678888888888888888887665443444445555556555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.17  E-value=0.00021  Score=56.01  Aligned_cols=87  Identities=22%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             cchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc---ceeecccCC
Q 042585          116 QMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL---VNVSSCKNL  192 (286)
Q Consensus       116 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~~~~~L  192 (286)
                      ..++..++++.|.|+.+.+....|..+.+.+|+.|+++++++.+  +..-+++.|.|+.|+++...-.   ..|+.+|-|
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence            35677889999999998886665777889999999999998543  3334577999999999744322   567779999


Q ss_pred             ceEEecCcccCh
Q 042585          193 KHLDLCDGSYTD  204 (286)
Q Consensus       193 ~~L~l~~~~~~~  204 (286)
                      +.|+++.+....
T Consensus       105 evldltynnl~e  116 (264)
T KOG0617|consen  105 EVLDLTYNNLNE  116 (264)
T ss_pred             hhhhcccccccc
Confidence            999998665443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.17  E-value=0.0055  Score=59.84  Aligned_cols=32  Identities=25%  Similarity=0.245  Sum_probs=15.9

Q ss_pred             CccEEEEeceeeccCCcCcccCCCccEEEcceee
Q 042585          123 SIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY  156 (286)
Q Consensus       123 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~  156 (286)
                      +|+.|+++++.+..+ |. .-+++|+.|+|+++.
T Consensus       263 ~L~~L~Ls~N~L~~L-P~-~l~~sL~~L~Ls~N~  294 (754)
T PRK15370        263 ALQSLDLFHNKISCL-PE-NLPEELRYLSVYDNS  294 (754)
T ss_pred             CCCEEECcCCccCcc-cc-ccCCCCcEEECCCCc
Confidence            555566655554321 11 112456666666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.14  E-value=0.0068  Score=59.20  Aligned_cols=32  Identities=22%  Similarity=0.243  Sum_probs=18.0

Q ss_pred             CCccEEecccccCccccccc-cccccEEEeeccc
Q 042585          215 PLLEQLHISLCNNIESITIS-SLRLKKLIINTCE  247 (286)
Q Consensus       215 p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~  247 (286)
                      ++|++|++.+|. ++.+.-. .++|+.|++++|.
T Consensus       325 ~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~  357 (754)
T PRK15370        325 PGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQ  357 (754)
T ss_pred             ccceeccccCCc-cccCChhhcCcccEEECCCCC
Confidence            456666666653 2222111 2578888888774

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.08  E-value=0.004  Score=37.47  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=17.0

Q ss_pred             CccEEEEeceeeccCCcCcccCCCccEEEcceeee
Q 042585          123 SIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYA  157 (286)
Q Consensus       123 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~  157 (286)
                      +|++|+++++.+..+.+....+++|+.|+++++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            45556665555533322244556666666655553

...

>PLN03150 hypothetical protein; Provisional

Probab=95.91  E-value=0.012  Score=56.53  Aligned_cols=78  Identities=23%  Similarity=0.228  Sum_probs=33.8

Q ss_pred             ccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEEec
Q 042585          124 IKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLC  198 (286)
Q Consensus       124 L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~  198 (286)
                      ++.|+|+++.+.. .......+++|+.|+|+++.+... +...+..+++|+.|+++++...    ..+..+++|+.|++.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4445555544422 112233455555555555543211 1112344555555555544322    112225555555555


Q ss_pred             Cccc
Q 042585          199 DGSY  202 (286)
Q Consensus       199 ~~~~  202 (286)
                      ++.+
T Consensus       499 ~N~l  502 (623)
T PLN03150        499 GNSL  502 (623)
T ss_pred             CCcc
Confidence            5443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.0017  Score=54.90  Aligned_cols=78  Identities=23%  Similarity=0.243  Sum_probs=43.0

Q ss_pred             CCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEe
Q 042585          144 LLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLH  221 (286)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~  221 (286)
                      +.+.++|++++|.++|-.   |....|.||.|.|+-....  ..+..|.+|+.|.+..+.+.+=.=.....++|+|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            445566777777665543   2345667777777633221  22223777777777644443311114456777777777


Q ss_pred             ccc
Q 042585          222 ISL  224 (286)
Q Consensus       222 l~~  224 (286)
                      +..
T Consensus        95 L~E   97 (388)
T KOG2123|consen   95 LDE   97 (388)
T ss_pred             hcc
Confidence            766

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.74  E-value=0.0038  Score=53.36  Aligned_cols=121  Identities=22%  Similarity=0.221  Sum_probs=57.6

Q ss_pred             CCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccccee--ec-ccCCceEEec
Q 042585          122 KSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNV--SS-CKNLKHLDLC  198 (286)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~~-~~~L~~L~l~  198 (286)
                      +.|+.++|+++.+..+.....-.|.++.|+++.+.+..  +.. ++..++|..|++++..-....  .- .-+.|.|+++
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            44555666665542221222335666666666655211  111 233566666666643211111  11 4566666666


Q ss_pred             CcccChhhHHHHHhcCCCccEEeccccc--Ccccc-ccc-cccccEEEeecccC
Q 042585          199 DGSYTDEWLNSQISGLPLLEQLHISLCN--NIESI-TIS-SLRLKKLIINTCES  248 (286)
Q Consensus       199 ~~~~~~~~l~~~~~~~p~L~~L~l~~c~--~~~~~-~i~-~p~L~~L~ls~c~~  248 (286)
                      .+.+.+  + +-....-+|++|++++..  .+..+ +|. .|.|+.+.+.+.+-
T Consensus       361 ~N~iE~--L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  361 QNKIET--L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhHhh--h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            543322  1 222344566777776642  22222 233 37777777766543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.73  E-value=0.0051  Score=52.52  Aligned_cols=102  Identities=23%  Similarity=0.308  Sum_probs=70.7

Q ss_pred             CccEEEEeceeecc---CCcCcccCCCccEEEcceeeeChH-HHHHHHhcCCCcceEEeeecccc-ceeec----ccCCc
Q 042585          123 SIKVLTLQNYKLES---LGNDDVKLLSLRKLHLSDVYADDQ-VMNNLFAQSPLLQHLEFVRYNNL-VNVSS----CKNLK  193 (286)
Q Consensus       123 ~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~cp~Le~L~l~~c~~~-~~~~~----~~~L~  193 (286)
                      -++-|.+-+|.++.   +......+..++.|+|.++.++++ .+..|....|.|+.|+++ |... ..+..    ..+|+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCccccCcccccceE
Confidence            44556666777733   112233588999999999996664 588899999999999998 4443 33333    45889


Q ss_pred             eEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          194 HLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       194 ~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      .|.+.+....=..+.....+.|+++.|+++..
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            99888765443334466777888888877764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.71  E-value=0.00023  Score=66.21  Aligned_cols=139  Identities=20%  Similarity=0.153  Sum_probs=75.4

Q ss_pred             cccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--c-ee
Q 042585          110 TWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--V-NV  186 (286)
Q Consensus       110 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~-~~  186 (286)
                      +-..+|..+-...||..++++.+.+...+......++|+.|+|+++.++.-.+.  .....+||.|+++...-.  . .+
T Consensus       210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQLt~LP~av  287 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQLTVLPDAV  287 (1255)
T ss_pred             hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc--HHHHhhhhhhccccchhccchHHH
Confidence            445566666666677777776666644333445577777777777764432211  122455666766643211  1 11


Q ss_pred             ecccCCceEEecCcccChh----h------HH-------------HHHhcCCCccEEecccccCcc-ccccc-cccccEE
Q 042585          187 SSCKNLKHLDLCDGSYTDE----W------LN-------------SQISGLPLLEQLHISLCNNIE-SITIS-SLRLKKL  241 (286)
Q Consensus       187 ~~~~~L~~L~l~~~~~~~~----~------l~-------------~~~~~~p~L~~L~l~~c~~~~-~~~i~-~p~L~~L  241 (286)
                      ..++.|+.|...++..+=+    +      +.             .-...|++|+.|.+....-++ .-.|+ .|.|+.|
T Consensus       288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vL  367 (1255)
T KOG0444|consen  288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVL  367 (1255)
T ss_pred             hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCccee
Confidence            1155555555543322110    0      00             113467888888887654433 12233 4789999


Q ss_pred             EeecccCCc
Q 042585          242 IINTCESNT  250 (286)
Q Consensus       242 ~ls~c~~~~  250 (286)
                      ++...+++.
T Consensus       368 DlreNpnLV  376 (1255)
T KOG0444|consen  368 DLRENPNLV  376 (1255)
T ss_pred             eccCCcCcc
Confidence            999887764

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=95.57  E-value=0.01  Score=52.67  Aligned_cols=39  Identities=18%  Similarity=0.300  Sum_probs=34.3

Q ss_pred             ccCCCCCHHHHHHHHccCC-hhhHHHhhhhhhhhHhhhcc
Q 042585           15 DRISALPQPILQLIMSFLP-FKQVVQICMVSKVWLQAWHT   53 (286)
Q Consensus        15 d~i~~LPdeil~~Ils~L~-~~d~~~~~~vskrW~~lw~~   53 (286)
                      ..+++||+|+|..|..+|+ .-|++|.+.|||.||.....
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            3588999999999999997 57999999999999986543

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.31  E-value=0.0092  Score=51.09  Aligned_cols=39  Identities=23%  Similarity=0.439  Sum_probs=32.3

Q ss_pred             CcccCCCCCHHHHHHHHcc-----CChhhHHHhhhhhhhhHhhh
Q 042585           13 NVDRISALPQPILQLIMSF-----LPFKQVVQICMVSKVWLQAW   51 (286)
Q Consensus        13 ~~d~i~~LPdeil~~Ils~-----L~~~d~~~~~~vskrW~~lw   51 (286)
                      ..+.|+.||||+|..||..     ++.+++.+++.|||.|....
T Consensus       103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~  146 (366)
T KOG2997|consen  103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA  146 (366)
T ss_pred             hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence            3455789999999999974     45699999999999998743

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=0.0048  Score=52.70  Aligned_cols=130  Identities=16%  Similarity=0.155  Sum_probs=86.5

Q ss_pred             CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      ..++++++. +.-  -.+.++-+.+.+.+.|+.|+|+.+.+.. ....+....+|++|.|-+..++-..+.......|.+
T Consensus        71 ~~v~elDL~~N~i--SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTGNLI--SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhcccchh--ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            356778887 322  1455555666788999999999877732 111123466899999999888878888888999999


Q ss_pred             ceEEeeecc--cc---ceeec--ccCCceEEecCcccCh-hhHHHHHhcCCCccEEeccccc
Q 042585          173 QHLEFVRYN--NL---VNVSS--CKNLKHLDLCDGSYTD-EWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       173 e~L~l~~c~--~~---~~~~~--~~~L~~L~l~~~~~~~-~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      .+|+++...  ..   .+...  .+.++.|+...|.+.- .....+....|++..+.+..|+
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P  210 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP  210 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence            999887531  11   11111  6677777777764321 1123566778888888877764

>PLN03150 hypothetical protein; Provisional

Probab=95.19  E-value=0.036  Score=53.37  Aligned_cols=70  Identities=14%  Similarity=0.162  Sum_probs=53.9

Q ss_pred             ccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecc
Q 042585          111 WNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYN  181 (286)
Q Consensus       111 ~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~  181 (286)
                      ...+|..+..+++|+.|+|+++.+.. .......+++|+.|+|+++.++.. +...+..+++|+.|+++++.
T Consensus       431 ~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCc
Confidence            34677788889999999999998853 323456799999999999985432 22335679999999999764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.16  E-value=0.0033  Score=52.45  Aligned_cols=99  Identities=21%  Similarity=0.210  Sum_probs=48.2

Q ss_pred             cCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeec--cccceeec----ccCCceEEecCcccCh-hhHHHHHhcC
Q 042585          143 KLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRY--NNLVNVSS----CKNLKHLDLCDGSYTD-EWLNSQISGL  214 (286)
Q Consensus       143 ~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c--~~~~~~~~----~~~L~~L~l~~~~~~~-~~l~~~~~~~  214 (286)
                      .+..|+.|++.++. .+-..+    -..|+|+.|.++..  +....+..    +|+|++|+++++.+.+ +.+ .-....
T Consensus        41 ~~~~le~ls~~n~gltt~~~~----P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l  115 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNF----PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKEL  115 (260)
T ss_pred             cccchhhhhhhccceeecccC----CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhh
Confidence            45666666666665 222111    22456677777643  22222211    6777777777665443 111 112344


Q ss_pred             CCccEEecccccCcc--c----cccccccccEEEeecc
Q 042585          215 PLLEQLHISLCNNIE--S----ITISSLRLKKLIINTC  246 (286)
Q Consensus       215 p~L~~L~l~~c~~~~--~----~~i~~p~L~~L~ls~c  246 (286)
                      ++|..|++..|+...  +    +..-.|+|+.|+--.+
T Consensus       116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             cchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            556666666664332  1    1122466666655444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.74  E-value=0.04  Score=33.05  Aligned_cols=34  Identities=47%  Similarity=0.656  Sum_probs=21.5

Q ss_pred             cCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          190 KNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       190 ~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      ++|++|+++++.+++  +......+|+|+.|+++++
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            467777777776664  3233567777777777776

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=94.36  E-value=0.02  Score=30.02  Aligned_cols=19  Identities=37%  Similarity=0.537  Sum_probs=9.7

Q ss_pred             CCCccEEecccccCccccc
Q 042585          214 LPLLEQLHISLCNNIESIT  232 (286)
Q Consensus       214 ~p~L~~L~l~~c~~~~~~~  232 (286)
                      ||+|++|++++|.++++.+
T Consensus         1 c~~L~~L~l~~C~~itD~g   19 (26)
T smart00367        1 CPNLRELDLSGCTNITDEG   19 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHH
Confidence            4455555555555554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.14  E-value=0.025  Score=47.80  Aligned_cols=34  Identities=21%  Similarity=0.133  Sum_probs=14.4

Q ss_pred             CCceEEecCcccChhhHHHH----HhcCCCccEEeccc
Q 042585          191 NLKHLDLCDGSYTDEWLNSQ----ISGLPLLEQLHISL  224 (286)
Q Consensus       191 ~L~~L~l~~~~~~~~~l~~~----~~~~p~L~~L~l~~  224 (286)
                      +||.+.+..+.+...++..+    ...|.+|+.|++++
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD  223 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD  223 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc
Confidence            44555554443333332222    13444555555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.92  E-value=0.083  Score=42.77  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=24.5

Q ss_pred             cCCccEEEEeceeeccCCc-CcccCCCccEEEcceee-eChHHHHHHHhcCCCcceEEee
Q 042585          121 SKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFV  178 (286)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~  178 (286)
                      .++|..|.|.++.+....+ ....+|+|++|.|.++. ..-.++.- +.+||.|+.|.+.
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll  121 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLL  121 (233)
T ss_pred             ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeec
Confidence            3455555555544411111 12235555555555554 22222322 2345555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.34  E-value=0.0099  Score=56.62  Aligned_cols=133  Identities=20%  Similarity=0.299  Sum_probs=75.5

Q ss_pred             CcchhccCCccEEEEeceeeccCCcCccc-CCCccEEEcceeeeChHHHHHHHhcC-----CCcceEEee--e--cccc-
Q 042585          115 PQMVLRSKSIKVLTLQNYKLESLGNDDVK-LLSLRKLHLSDVYADDQVMNNLFAQS-----PLLQHLEFV--R--YNNL-  183 (286)
Q Consensus       115 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~c-----p~Le~L~l~--~--c~~~-  183 (286)
                      |-.++....|++|.|.+|.+... -+... -.+|++|--   +-+-.+++.++++|     ..+....|.  .  |... 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC---~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLIC---HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhh---hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence            77788899999999999887321 11111 233555432   22334566666544     223332221  1  1111 


Q ss_pred             ---ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc--cCccccccccccccEEEeecccCCccccc
Q 042585          184 ---VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC--NNIESITISSLRLKKLIINTCESNTIFSF  254 (286)
Q Consensus       184 ---~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c--~~~~~~~i~~p~L~~L~ls~c~~~~~~~~  254 (286)
                         ..+.-.|.|++|+++++.+++-   .....||+|++|+++..  +.+..++..+-.|..|.+++..--+..++
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gi  250 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGI  250 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhH
Confidence               1122278899999998887764   46788999999998873  33444443333466666666544443333

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.31  E-value=0.071  Score=27.20  Aligned_cols=23  Identities=26%  Similarity=0.189  Sum_probs=15.9

Q ss_pred             CCCccEEEcceeeeChHHHHHHH
Q 042585          144 LLSLRKLHLSDVYADDQVMNNLF  166 (286)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~l~  166 (286)
                      +++|++|+|.++.+++.++..+.
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            46788888888888888877754

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.00  E-value=0.064  Score=43.40  Aligned_cols=101  Identities=20%  Similarity=0.208  Sum_probs=57.8

Q ss_pred             CccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc-----ceeecccCCceEEe
Q 042585          123 SIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL-----VNVSSCKNLKHLDL  197 (286)
Q Consensus       123 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~-----~~~~~~~~L~~L~l  197 (286)
                      ....++|+.+.+... ....+++.|.+|.|.+++++.-+ ..+....|+|..|.+.+....     ..++.||+|++|++
T Consensus        43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc-ccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            345566666554111 33446778888888888743211 123345778888888754321     22334788888888


Q ss_pred             cCcccChh-hHH-HHHhcCCCccEEecccc
Q 042585          198 CDGSYTDE-WLN-SQISGLPLLEQLHISLC  225 (286)
Q Consensus       198 ~~~~~~~~-~l~-~~~~~~p~L~~L~l~~c  225 (286)
                      -++.++.. ..+ .+....|+|+.|++.+-
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhh
Confidence            77665542 111 22345677777777663

>PF13013 F-box-like_2: F-box-like domain

Probab=92.35  E-value=0.13  Score=37.50  Aligned_cols=30  Identities=20%  Similarity=0.349  Sum_probs=27.1

Q ss_pred             cCCCCCHHHHHHHHccCChhhHHHhhhhhh
Q 042585           16 RISALPQPILQLIMSFLPFKQVVQICMVSK   45 (286)
Q Consensus        16 ~i~~LPdeil~~Ils~L~~~d~~~~~~vsk   45 (286)
                      .+.+||+|++..||.+....++......|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            478999999999999999999988887776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=92.15  E-value=0.055  Score=46.50  Aligned_cols=54  Identities=20%  Similarity=0.183  Sum_probs=31.7

Q ss_pred             CCCcceEEeeecccc---ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          169 SPLLQHLEFVRYNNL---VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       169 cp~Le~L~l~~c~~~---~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      ...|++|+++.....   ..+...|.++.|+++.+.+..-  .. ....++|..|++++.
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~n-La~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QN-LAELPQLQLLDLSGN  339 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hh-hhhcccceEeecccc
Confidence            344666666543211   2222268888888887665432  12 567788888888774

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.35  E-value=0.018  Score=48.84  Aligned_cols=57  Identities=21%  Similarity=0.250  Sum_probs=32.5

Q ss_pred             ccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeCh-HHHHHHHhcCCCcceEEee
Q 042585          120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADD-QVMNNLFAQSPLLQHLEFV  178 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~  178 (286)
                      +.+.|++|.|+-+.+..+ .....|.+|+.|.|..+.+.+ +.+.. +.+.|+|+.|=|.
T Consensus        39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~   96 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLD   96 (388)
T ss_pred             hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhc
Confidence            456666666666655432 334556777777776666333 23333 4566666666554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=91.27  E-value=0.095  Score=49.34  Aligned_cols=40  Identities=25%  Similarity=0.373  Sum_probs=37.0

Q ss_pred             CCCcccCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhh
Q 042585           11 NHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQA   50 (286)
Q Consensus        11 ~~~~d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~l   50 (286)
                      ....|.++.||-|+..+||++|+.++++.+++||+.|+.+
T Consensus       102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            3468899999999999999999999999999999999875

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=90.76  E-value=0.36  Score=48.35  Aligned_cols=121  Identities=26%  Similarity=0.341  Sum_probs=67.7

Q ss_pred             CCccEEEEeceeeccCCcCcccCCCccEEEcceeee-ChHHHHHHHhcCCCcceEEeeeccccceee----cccCCceEE
Q 042585          122 KSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYA-DDQVMNNLFAQSPLLQHLEFVRYNNLVNVS----SCKNLKHLD  196 (286)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~----~~~~L~~L~  196 (286)
                      .....+.+.+..+... +....+|.|++|-+.++.- -...-..++...|.|+.|++++|.....+.    .+-+||+|+
T Consensus       523 ~~~rr~s~~~~~~~~~-~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHI-AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchhhc-cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            3445555544433111 3445577888888877641 111122335568889999998876553332    277888888


Q ss_pred             ecCcccChhhHHHHHhcCCCccEEecccccCcccc-ccc--cccccEEEeec
Q 042585          197 LCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI-TIS--SLRLKKLIINT  245 (286)
Q Consensus       197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~-~i~--~p~L~~L~ls~  245 (286)
                      ++++.+..  +..-.....+|.+|++........+ ++.  .++|+.|.+..
T Consensus       602 L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  602 LSDTGISH--LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             ccCCCccc--cchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            88776552  2122344456777776665443333 222  25666666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=90.71  E-value=0.11  Score=46.82  Aligned_cols=79  Identities=25%  Similarity=0.342  Sum_probs=43.9

Q ss_pred             CceEEEEEeccCCCcccCCCcchhccC-CccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           96 NVEELEVEHLRRLDTWNSLPQMVLRSK-SIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        96 ~l~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .+..+.+.+    .....++......+ +|+.|++++..+.........+++|+.|.+.++.+++-.  ......++|+.
T Consensus       117 ~l~~L~l~~----n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~~~L~~  190 (394)
T COG4886         117 NLTSLDLDN----NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP--KLLSNLSNLNN  190 (394)
T ss_pred             ceeEEecCC----cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhh--hhhhhhhhhhh
Confidence            345555541    12345555555553 777777777766442224456777777777777643321  11124666677


Q ss_pred             EEeeec
Q 042585          175 LEFVRY  180 (286)
Q Consensus       175 L~l~~c  180 (286)
                      |++++.
T Consensus       191 L~ls~N  196 (394)
T COG4886         191 LDLSGN  196 (394)
T ss_pred             eeccCC
Confidence            766654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=88.95  E-value=0.16  Score=46.42  Aligned_cols=102  Identities=27%  Similarity=0.238  Sum_probs=53.0

Q ss_pred             hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeee-ChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCce
Q 042585          118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYA-DDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKH  194 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~  194 (286)
                      +..+++|+.|.+..+.+........++++|++|+|+++.+ +-.++..    ++.|+.|++.++...  ..+..+++|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNLISDISGLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhh----ccchhhheeccCcchhccCCccchhhhc
Confidence            3345666666666666533211144567777777776663 2233332    344677776654332  22333566666


Q ss_pred             EEecCcccChhhHHHH-HhcCCCccEEecccc
Q 042585          195 LDLCDGSYTDEWLNSQ-ISGLPLLEQLHISLC  225 (286)
Q Consensus       195 L~l~~~~~~~~~l~~~-~~~~p~L~~L~l~~c  225 (286)
                      +++.++.+..-.  .. ...+++|+.+.+.+.
T Consensus       167 l~l~~n~i~~ie--~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  167 LDLSYNRIVDIE--NDELSELISLEELDLGGN  196 (414)
T ss_pred             ccCCcchhhhhh--hhhhhhccchHHHhccCC
Confidence            666655444311  11 355666666666553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.82  E-value=0.35  Score=43.34  Aligned_cols=17  Identities=12%  Similarity=0.081  Sum_probs=9.1

Q ss_pred             HHHHHHHhCCceEEEEE
Q 042585           87 RCISYAIERNVEELEVE  103 (286)
Q Consensus        87 ~~~~~~~~~~l~~L~l~  103 (286)
                      .....+-...+..++++
T Consensus       380 EVfea~~~~~Vt~Vnfs  396 (565)
T KOG0472|consen  380 EVFEAAKSEIVTSVNFS  396 (565)
T ss_pred             HHHHHhhhcceEEEecc
Confidence            33334444566666666

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=87.04  E-value=0.093  Score=47.91  Aligned_cols=123  Identities=24%  Similarity=0.234  Sum_probs=75.5

Q ss_pred             ccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEEe
Q 042585          120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLDL  197 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~l  197 (286)
                      .+..++.+.+....+.........+.+|+.|++.+..+..  +..+...+++|+.|++++....  ..+..++.|+.|++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL  147 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh--cccchhhhhcchheeccccccccccchhhccchhhhee
Confidence            4556666666655553211335568999999998887322  2222567999999999865432  33333777999999


Q ss_pred             cCcccChhhHHHHHhcCCCccEEecccccCccccc---cccccccEEEeeccc
Q 042585          198 CDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---ISSLRLKKLIINTCE  247 (286)
Q Consensus       198 ~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i~~p~L~~L~ls~c~  247 (286)
                      .++.+.+-   .-....++|+.++++++.....-.   ...++++.+.+.+..
T Consensus       148 ~~N~i~~~---~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  148 SGNLISDI---SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             ccCcchhc---cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            98876642   112338888888888864332222   223455555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=85.79  E-value=0.044  Score=52.42  Aligned_cols=10  Identities=50%  Similarity=0.690  Sum_probs=5.3

Q ss_pred             HHHHHHccCC
Q 042585           24 ILQLIMSFLP   33 (286)
Q Consensus        24 il~~Ils~L~   33 (286)
                      -|..||.+|+
T Consensus        75 qLq~i~d~lq   84 (1096)
T KOG1859|consen   75 QLQRILDFLQ   84 (1096)
T ss_pred             HHHHHHHHHh
Confidence            3455555555

>PRK15386 type III secretion protein GogB; Provisional

Probab=85.71  E-value=0.81  Score=41.53  Aligned_cols=71  Identities=14%  Similarity=0.177  Sum_probs=48.6

Q ss_pred             HhcCCCcceEEeeeccccceeec-ccCCceEEecCcccChhhHHHHH-hcCCCccEEecccccCccccccccccccEEEe
Q 042585          166 FAQSPLLQHLEFVRYNNLVNVSS-CKNLKHLDLCDGSYTDEWLNSQI-SGLPLLEQLHISLCNNIESITISSLRLKKLII  243 (286)
Q Consensus       166 ~~~cp~Le~L~l~~c~~~~~~~~-~~~L~~L~l~~~~~~~~~l~~~~-~~~p~L~~L~l~~c~~~~~~~i~~p~L~~L~l  243 (286)
                      +..|++++.|++++| ....+.. .++|++|++.+|..-.    .+. .-.++|++|.+.+|..+..+   -+.|+.|++
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLt----sLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L  119 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLT----TLPGSIPEGLEKLTVCHCPEISGL---PESVRSLEI  119 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcc----cCCchhhhhhhheEccCccccccc---ccccceEEe
Confidence            445899999999988 4444445 5689999999864211    111 12468999999999766543   235777776


Q ss_pred             e
Q 042585          244 N  244 (286)
Q Consensus       244 s  244 (286)
                      +
T Consensus       120 ~  120 (426)
T PRK15386        120 K  120 (426)
T ss_pred             C
Confidence            5

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=85.58  E-value=1.6  Score=37.33  Aligned_cols=109  Identities=18%  Similarity=0.198  Sum_probs=67.7

Q ss_pred             hccCCccEEEEeceeecc-----CCcCcccCCCccEEEcceee---eChHH------HHHHHhcCCCcceEEeeecccc-
Q 042585          119 LRSKSIKVLTLQNYKLES-----LGNDDVKLLSLRKLHLSDVY---ADDQV------MNNLFAQSPLLQHLEFVRYNNL-  183 (286)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L~~~~---~~~~~------l~~l~~~cp~Le~L~l~~c~~~-  183 (286)
                      .....++.++|+|+.+..     ......+-.+|+.-+++...   ..|..      +-..+..||+|+..+++..... 
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            346888999999988721     11122334556666666554   22222      2223457999999999975432 


Q ss_pred             ------ceeec-ccCCceEEecCcccChhh-------HH-----HHHhcCCCccEEecccccC
Q 042585          184 ------VNVSS-CKNLKHLDLCDGSYTDEW-------LN-----SQISGLPLLEQLHISLCNN  227 (286)
Q Consensus       184 ------~~~~~-~~~L~~L~l~~~~~~~~~-------l~-----~~~~~~p~L~~L~l~~c~~  227 (286)
                            .++.. ...|++|.+.+|..+.-+       +.     .=..+.|.|+.+.+...+.
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence                  23333 789999999988655321       11     1135789999999887653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=84.94  E-value=0.55  Score=42.36  Aligned_cols=84  Identities=21%  Similarity=0.245  Sum_probs=52.3

Q ss_pred             hhccCCccEEEEeceeeccCCcCcccC-CCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc--eee-cccCCc
Q 042585          118 VLRSKSIKVLTLQNYKLESLGNDDVKL-LSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV--NVS-SCKNLK  193 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~--~~~-~~~~L~  193 (286)
                      +...+.++.|.+.+..+....+..... ++|+.|++.+..+.+..  .-...+|+|+.|+++.+....  ... ..+.|+
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~  189 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence            334467888888876663332233334 38888888888743321  124568889999888775432  222 377888


Q ss_pred             eEEecCcccC
Q 042585          194 HLDLCDGSYT  203 (286)
Q Consensus       194 ~L~l~~~~~~  203 (286)
                      .|+++++.+.
T Consensus       190 ~L~ls~N~i~  199 (394)
T COG4886         190 NLDLSGNKIS  199 (394)
T ss_pred             heeccCCccc
Confidence            8888876554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=83.39  E-value=1.2  Score=23.59  Aligned_cols=24  Identities=33%  Similarity=0.295  Sum_probs=19.6

Q ss_pred             CCccEEEcceeeeChHHHHHHHhc
Q 042585          145 LSLRKLHLSDVYADDQVMNNLFAQ  168 (286)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~l~~~  168 (286)
                      ++|++|+|+++.+++.+...+...
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHH
Confidence            578999999999999888776543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=82.42  E-value=0.31  Score=43.51  Aligned_cols=10  Identities=30%  Similarity=0.444  Sum_probs=6.1

Q ss_pred             ccccEEEeec
Q 042585          236 LRLKKLIINT  245 (286)
Q Consensus       236 p~L~~L~ls~  245 (286)
                      |+|++|++++
T Consensus       274 ~~L~~lnlsn  283 (498)
T KOG4237|consen  274 PNLRKLNLSN  283 (498)
T ss_pred             ccceEeccCC
Confidence            5666666654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.03  E-value=0.72  Score=41.44  Aligned_cols=106  Identities=19%  Similarity=0.204  Sum_probs=60.9

Q ss_pred             CcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeC--hHHHHHHHhcCCCcceEEeeecccc----ceeec
Q 042585          115 PQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYAD--DQVMNNLFAQSPLLQHLEFVRYNNL----VNVSS  188 (286)
Q Consensus       115 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~  188 (286)
                      |..+...++|..|+|+++.+...+...+..-.|++|+++.+++.  .+.+..    -..||.+-.++....    ..+..
T Consensus       428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~----lq~lEtllas~nqi~~vd~~~l~n  503 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYE----LQTLETLLASNNQIGSVDPSGLKN  503 (565)
T ss_pred             hHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhh----HHHHHHHHhccccccccChHHhhh
Confidence            34556778888888888766443334455677888888887621  111111    111222222211110    11222


Q ss_pred             ccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          189 CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      +.+|.+|++.++++..  +-.+..+|.+|++|++.|.+
T Consensus       504 m~nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  504 MRNLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hhhcceeccCCCchhh--CChhhccccceeEEEecCCc
Confidence            7788888888765432  22566788888888888854

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=81.85  E-value=1  Score=20.88  Aligned_cols=11  Identities=18%  Similarity=0.308  Sum_probs=5.0

Q ss_pred             cccEEEeeccc
Q 042585          237 RLKKLIINTCE  247 (286)
Q Consensus       237 ~L~~L~ls~c~  247 (286)
                      +|+.|++++|+
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            45555555554

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 36/268 (13%), Positives = 78/268 (29%), Gaps = 48/268 (17%)

Query: 15  DRISALPQPILQLIMSFLPFKQVVQICM-VSKVWLQAWHTFPDLEIDKVKFLGPSKKLTV 73
               + P+ +L+ + SF+   +       V K W +                   +K+ +
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE-------------RWCRRKVFI 50

Query: 74  KTYGSEAALNFANRCISYAIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYK 133
               + +      R         V  +E++       +N +P          +  + +  
Sbjct: 51  GNCYAVSPATVIRRF------PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS- 103

Query: 134 LESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVN------VS 187
                        L ++ L  +   D  +  +       + L                 +
Sbjct: 104 ----------YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA 153

Query: 188 SCKNLKHLDLCD---GSYTDEWLNSQISGLPLLEQLHISLCNN------IESITISSLRL 238
           +C+NLK LDL +      +  WL+        L  L+IS   +      +E +      L
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213

Query: 239 KKLIINTCESNTIFSFGSIALFSLALRK 266
           K L +N           ++   +  L +
Sbjct: 214 KSLKLNRAVPLE--KLATLLQRAPQLEE 239

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 17/178 (9%)

Query: 95  RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQN-YKLESLGNDDVKLLSLRKLHLS 153
            ++  L +  L    ++++L ++V R  ++K L L     LE L     +   L +L   
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243

Query: 154 DVYA--DDQVMNNLFAQSPLLQHLEFVRYNNLVN-------VSSCKNLKHLDLCDGSYTD 204
              A     V + L       + L  +               S C  L  L+L   +   
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

Query: 205 EWLNSQISGLPLLEQLHISLCNNIESITISSL-----RLKKLIINTCESNTIFSFGSI 257
             L   +   P L++L   + + IE   +  L      L++L +   E   +    ++
Sbjct: 304 YDLVKLLCQCPKLQRLW--VLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 146 SLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNN----LVNV-SSCKNLKHLDLCDG 200
            LR+L LS +   D+V   +   +  ++ L      +    + +V S C +L+ L++ D 
Sbjct: 433 DLRRLSLSGLL-TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491

Query: 201 SYTDEWLNSQISGLPLLEQLHISLCN----NIESITISSLRLKKLIINTC 246
            + D+ L +  S L  +  L +S C+      + +     +L   +I+  
Sbjct: 492 PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 38/273 (13%), Positives = 93/273 (34%), Gaps = 27/273 (9%)

Query: 9   KKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQA-----WHTFPDLEIDKVK 63
           ++N       +LP  +L  I S L   +++++  V K W +           DL    + 
Sbjct: 1   RENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH 60

Query: 64  FLGPSKKLTVKTYGSEAALNFANRCISYAIERNVEELEVEHLRRLDTW---NSLPQMVLR 120
                + L+        A       +   +  +     V+H+   ++    ++L  ++ +
Sbjct: 61  PDVTGRLLSQGVI----AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116

Query: 121 SKSIKVLTLQNYKLESLGNDDV-KLLSLRKLHLSDVYA-DDQVMNNLFAQSPLLQHLEFV 178
              ++ L+L+  +L     + + K  +L +L+LS      +  +  L +    L  L   
Sbjct: 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176

Query: 179 RYNNLVNVS-------SCKNLKHLDL--CDGSYTDEWLNSQISGLPLLEQLHISLCNNIE 229
              +              + +  L+L     +     L++ +   P L  L +S    ++
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236

Query: 230 SITISSL----RLKKLIINTCESNTIFSFGSIA 258
           +           L+ L ++ C      +   + 
Sbjct: 237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 269

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 49/329 (14%), Positives = 98/329 (29%), Gaps = 87/329 (26%)

Query: 10  KNHNVDRISALPQPILQLIMSFLPF----KQVVQICMVSKV-----WL-QAWHTFPDLEI 59
               +D I      +   +  F       +++VQ  +   +     +L     T      
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT------ 100

Query: 60  DKVKFLGPSKKLTVKTYGSEAALNFANRCISYAIERNVEELEV-EHLRRLD--TWNSLPQ 116
              +   PS    +     +   N       Y + R    L++ + L  L       +  
Sbjct: 101 ---EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 117 MVLRSKSIKVL-TLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQ------- 168
           ++   K+   L    +YK++   +  +  L+L+  +  +     +++  L  Q       
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE--TVLEMLQKLLYQIDPNWTS 215

Query: 169 -----SPLLQHLEFVR-----------YNN--LV--NVSSCKNLKHLDL-C-------DG 200
                S +   +  ++           Y N  LV  NV + K     +L C         
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 201 SYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINTCESNTIFS-FGSIAL 259
             TD         L      HISL ++  ++T              E  ++   +     
Sbjct: 276 QVTD--------FLSAATTTHISLDHHSMTLTPD------------EVKSLLLKYLDCRP 315

Query: 260 FSLALRK----PLGLA--SREAQDFLATF 282
             L        P  L+  +   +D LAT+
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATW 344

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 8e-07
 Identities = 48/317 (15%), Positives = 94/317 (29%), Gaps = 104/317 (32%)

Query: 2   LYEMCRLK--------KNHNVDRISALPQPILQL---IMSFLPFKQVVQICM--VSKVWL 48
           +Y   R +          +NV R     QP L+L   ++   P K V+   +    K W+
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 49  QAWHTFPDLEIDKVKFLGPSKKLTVKTYGSEAAL-------------NFANRC-ISYAIE 94
            A       ++ + K       L +K   S   +             N+ +R   S  I+
Sbjct: 167 -ALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 95  RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSD 154
             +  ++   LRRL         +L      VL             +V+           
Sbjct: 225 LRIHSIQ-AELRRLLKSKPYENCLL------VL------------LNVQ----------- 254

Query: 155 VYADDQVMNNLFAQSPLLQHLEFV--RYNNLVNVSSCKNLKHL---DLCDGSYTDE---- 205
              + +  N       +L     +  R+  + +  S     H+           DE    
Sbjct: 255 ---NAKAWNAFNLSCKIL-----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 206 ---WLNSQISGLPLLEQ------LHISLC-----------NNIESITISSL-RLKKLIIN 244
              +L+ +   LP   +        +S+            +N + +    L  + +  +N
Sbjct: 307 LLKYLDCRPQDLP--REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 245 TCESNTIFS-FGSIALF 260
             E       F  +++F
Sbjct: 365 VLEPAEYRKMFDRLSVF 381

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 57/330 (17%), Positives = 100/330 (30%), Gaps = 124/330 (37%)

Query: 16  RISALPQPILQLIMSFLPFKQVVQICMVS---KVWLQAWHTFPDLEIDKVKFLGPSKKLT 72
           R   LP+ +L       P +    + +++   +  L  W  +  +  DK+          
Sbjct: 314 RPQDLPREVLTTN----PRR----LSIIAESIRDGLATWDNWKHVNCDKL---------- 355

Query: 73  VKTYGSEAALNFANRCISYAIERNVEELEVEHLRRL---------DTWNSLPQMVL---- 119
                            +  IE ++  LE    R++              +P ++L    
Sbjct: 356 -----------------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIW 396

Query: 120 ----RSKSIKVLT-LQNYKLESLGNDDVKLLSLRKLHLSDVYADDQV-MNNLFAQSPLLQ 173
               +S  + V+  L  Y   SL     K  ++  +    +Y + +V + N +A      
Sbjct: 397 FDVIKSDVMVVVNKLHKY---SLVEKQPKESTIS-IP--SIYLELKVKLENEYA-----L 445

Query: 174 HLEFV-RYNNLVNVSSCKNLK-------------HLDLCDGS---------YTD-EWLNS 209
           H   V  YN      S   +              HL   +           + D  +L  
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 210 QI-----------SGLPLLEQL-----HISLCNNIESITISSLRLKKLIIN---TCESNT 250
           +I           S L  L+QL     +I  C+N         RL   I++     E N 
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYI--CDNDPKYE----RLVNAILDFLPKIEENL 559

Query: 251 IFSFGSIALFSLALRKPLGL----ASREAQ 276
           I S     L  +AL          A ++ Q
Sbjct: 560 ICS-KYTDLLRIALMAEDEAIFEEAHKQVQ 588

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 26/277 (9%), Positives = 80/277 (28%), Gaps = 51/277 (18%)

Query: 17  ISALPQPILQLIMSFLPFKQVVQICM-VSKVWLQAWHTFPDLEIDKVKFLGPSKKLTVKT 75
             A    +++ +M+++   +       V + W +                   + +T+  
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI-------------DSETREHVTMAL 59

Query: 76  YGSEAALNFANRCISYAIERNVEELEVEHLRRLDTWNSLP--QMVLRSKSIKVLTLQNYK 133
             +      + R        N+  L+++   R   +N +P       +  +  ++    +
Sbjct: 60  CYTATPDRLSRRF------PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113

Query: 134 LESL-------GNDDVKLL------SLRKLHLSDVYA-DDQVMNNLFAQSPLLQHLEFVR 179
           L+S+        + D+  L       L  L L          + ++      ++ L  + 
Sbjct: 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL-LME 172

Query: 180 YNNLVNVS---------SCKNLKHLDLCDGSY---TDEWLNSQISGLPLLEQLHISLCNN 227
            ++                 +L+ L+     +   + + L +       L  + +     
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232

Query: 228 IESITISSL--RLKKLIINTCESNTIFSFGSIALFSL 262
           +E +        L++    +   +       + L   
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 110 TWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDV--KLLSLRKLHLSDVYADDQVMNNLFA 167
             N +P +   +  I+ L L    LE+  +  +  K  +L  L   +V   D+ +  L  
Sbjct: 281 GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI-GDRGLEVLAQ 339

Query: 168 QSPLLQHLEFVRYNNLVNV----------------SSCKNLKHLDLCDGSYTDEWLNSQI 211
               L+ L   R  +   +                  C+ L+++ +     T+E L S  
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 212 SGLPLLEQLHISLCNNIESITISSL 236
           + L  L    + L +  E IT   L
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPL 424

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 13/118 (11%), Positives = 38/118 (32%), Gaps = 13/118 (11%)

Query: 146 SLRKLHLSDVYA--DDQVMNNLFAQSPLLQHLEFVRYNN-----LVNVSSCKNLKHLDLC 198
            LR+           D  ++ +   SP ++ +            +     C NL+ L++ 
Sbjct: 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496

Query: 199 DGSYTDEWLNSQISGLPLLEQLHISLCN------NIESITISSLRLKKLIINTCESNT 250
              +++  + + ++ LP L  L +          ++  +      ++ +         
Sbjct: 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVN 554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 23/154 (14%)

Query: 123 SIKVLTLQNYKLESLGNDDVKLLS-LRKLHLSDVYADDQVMNNL-------FAQSPLLQH 174
           ++K L L   K+  +G+ D++  + L+ L L          + +       F     L+H
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKS--------SRINTIEGDAFYSLGSLEH 78

Query: 175 LEFVRYNNLVNVSS-----CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIE 229
           L+ +  N+L ++SS       +LK+L+L    Y    + S    L  L+ L I       
Sbjct: 79  LD-LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 230 SITISSLR-LKKLIINTCESNTIFSFGSIALFSL 262
            I       L  L     ++ ++ ++ S +L S+
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 15/151 (9%)

Query: 104 HLRRLD------TWNSLPQMVLRS-KSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY 156
            L +L       ++            S+K L L    + ++ ++ + L  L  L      
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112

Query: 157 ADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSS-----CKNLKHLDLCDGSYTDEWLNSQI 211
                  ++F     L +L  + + +     +       +L+ L +   S+ + +L    
Sbjct: 113 LKQMSEFSVFLSLRNLIYL-DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 212 SGLPLLEQLHISLCNNIESITISSLR-LKKL 241
           + L  L  L +S    +E ++ ++   L  L
Sbjct: 172 TELRNLTFLDLS-QCQLEQLSPTAFNSLSSL 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 7/130 (5%)

Query: 113 SLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172
              Q    + S+K L L    + ++ ++ + L  L  L             ++F     L
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 173 QHLEFVRYNNLVNV-----SSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNN 227
            +L  + + +         +   +L+ L +   S+ + +L    + L  L  L +S    
Sbjct: 424 IYL-DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-QCQ 481

Query: 228 IESITISSLR 237
           +E ++ ++  
Sbjct: 482 LEQLSPTAFN 491

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 37/175 (21%)

Query: 123 SIKVLTLQNYKLESLGNDDVK-LLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYN 181
           + + L L    + ++       L  L+ L L   Y    +    F   P L+ L+    +
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL-GSS 83

Query: 182 NLVNV-------------------------------SSCKNLKHLDLCDGSYTDEWLNSQ 210
            +  +                                + K L  LDL        +L+  
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 211 ISGLPLLEQLHISLCNNIESI---TISSLRLKKLIINTCESNTIFSFGSIALFSL 262
              L  L+ +  S  N I  +    +  L+ K L   +  +N+++S  S+     
Sbjct: 144 FGKLNSLKSIDFSS-NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 12/117 (10%)

Query: 146 SLRKLHLSDVYADDQVMNNLFAQSPLLQHLEF----VRYNNLVNVSSCKNLKHLDLCDGS 201
            +R         D   +         +Q ++     +      ++   + ++ + LC   
Sbjct: 37  MVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96

Query: 202 YTDEWLNSQISGLP----LLEQLHISLCNNIESITISSL----RLKKLIINTCESNT 250
           Y ++    ++S L      + ++ I  C N+    I +L     LK L ++      
Sbjct: 97  YIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 39.9 bits (92), Expect = 5e-04
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 14  VDRISALPQPILQLIMSFLPFKQVVQIC-MVSKVWLQAWHTFPDLEIDKVKFLGPSKKLT 72
           V+ ++ LP+P+L  +++ LP  ++VQ C +V   W +       L + K +  G   + +
Sbjct: 48  VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD-GAPLWLLKCQQEGLVPEGS 106

Query: 73  VKTYGSEAALNFANRCISYAIERN 96
                      +        + RN
Sbjct: 107 ADEERDHWQQFYFLSKRRRNLLRN 130

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 119 LRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFV 178
           L + S++ L L       +  + + L  L+ L             + F     L +L+ +
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD-I 431

Query: 179 RYNNLVNV-----SSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITI 233
            Y N             +L  L +   S+ D  L++  +    L  L +S    +E I+ 
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS-KCQLEQISW 490

Query: 234 SSL----RLKKLIIN 244
                  RL+ L ++
Sbjct: 491 GVFDTLHRLQLLNMS 505

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.1
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.05
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.02
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.98
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.94
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.93
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.88
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.82
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.82
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.76
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.74
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.72
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.7
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.65
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.65
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.65
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.65
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.64
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.63
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.62
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.62
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.61
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.6
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.59
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.59
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.59
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.58
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.58
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.58
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.57
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.56
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.55
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.54
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.53
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.52
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.52
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.52
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.5
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.49
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.49
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.48
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.47
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.46
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.44
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.43
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.41
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.41
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.41
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.4
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.4
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.4
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.39
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.37
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.36
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.32
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.3
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.3
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.3
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.3
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.3
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.3
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.27
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.26
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.26
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.26
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.25
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.25
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.23
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.2
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.2
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.18
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.13
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.09
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.05
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.99
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.95
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.95
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.94
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.9
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.89
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.79
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.02
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.9
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.66
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.53
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.45
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.44
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.25
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.69
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	92.27
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	90.77
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.4
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	86.24

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=4.3e-23  Score=180.65  Aligned_cols=231  Identities=15%  Similarity=0.182  Sum_probs=152.7

Q ss_pred             CcccCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhcc---CCceEeecCCCCCcchhhhHHHHHHHHHHHh-----
Q 042585           13 NVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHT---FPDLEIDKVKFLGPSKKLTVKTYGSEAALNF-----   84 (286)
Q Consensus        13 ~~d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-----   84 (286)
                      +...|++||||++.+||+||+.+|+++++.|||+|+++...   ...+++....+..        ..+.+.....     
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~--------~~~~~~~~~~l~~L~   76 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHP--------DVTGRLLSQGVIAFR   76 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCH--------HHHHHHHHTTCSEEE
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCH--------HHHHhhhhccceEEE
Confidence            45568999999999999999999999999999999998543   2234544332221        1121111000     


Q ss_pred             -----HhH-HHHHHHhCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceee-
Q 042585           85 -----ANR-CISYAIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVY-  156 (286)
Q Consensus        85 -----~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~-  156 (286)
                           +.. +.......++++|+++...  .....++..+..+++|++|++++|.+.. .......+++|++|+|++|. 
T Consensus        77 l~~n~l~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~  154 (336)
T 2ast_B           77 CPRSFMDQPLAEHFSPFRVQHMDLSNSV--IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG  154 (336)
T ss_dssp             CTTCEECSCCCSCCCCBCCCEEECTTCE--ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS
T ss_pred             cCCccccccchhhccCCCCCEEEccCCC--cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCC
Confidence                 000 0000001455666665111  0112255566778888888888887632 21234458999999999996 


Q ss_pred             eChHHHHHHHhcCCCcceEEeeeccccce------eeccc-CCceEEecCc--ccChhhHHHHHhcCCCccEEecccccC
Q 042585          157 ADDQVMNNLFAQSPLLQHLEFVRYNNLVN------VSSCK-NLKHLDLCDG--SYTDEWLNSQISGLPLLEQLHISLCNN  227 (286)
Q Consensus       157 ~~~~~l~~l~~~cp~Le~L~l~~c~~~~~------~~~~~-~L~~L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~~c~~  227 (286)
                      +++.++..++..||+|++|++++|....+      +..++ +|++|++.+|  .+++..+......+|+|++|++++|..
T Consensus       155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  234 (336)
T 2ast_B          155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM  234 (336)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred             CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence            88888888888899999999998833322      22278 9999999987  567666667777899999999999875


Q ss_pred             cccccc----ccccccEEEeecccCCcccc
Q 042585          228 IESITI----SSLRLKKLIINTCESNTIFS  253 (286)
Q Consensus       228 ~~~~~i----~~p~L~~L~ls~c~~~~~~~  253 (286)
                      +++..+    ..++|+.|++++|...+...
T Consensus       235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  264 (336)
T 2ast_B          235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPET  264 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             CCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence            544322    24889999999987666553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=1.3e-20  Score=176.88  Aligned_cols=212  Identities=14%  Similarity=0.108  Sum_probs=144.4

Q ss_pred             cccCCCCCHHHHHHHHccCC-hhhHHHhhhhhhhhHhhhcc-CCceEeecCCCCCcchhhhHHHHHHHHHHHhHhHHHHH
Q 042585           14 VDRISALPQPILQLIMSFLP-FKQVVQICMVSKVWLQAWHT-FPDLEIDKVKFLGPSKKLTVKTYGSEAALNFANRCISY   91 (286)
Q Consensus        14 ~d~i~~LPdeil~~Ils~L~-~~d~~~~~~vskrW~~lw~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   91 (286)
                      .|.|+.||||++.+||+||+ .+|+++++.|||+|+++... ...+.+.......  ..    ....             
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~--~~----~~~~-------------   63 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS--PA----TVIR-------------   63 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC--HH----HHHH-------------
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC--HH----HHHh-------------
Confidence            48999999999999999999 99999999999999987211 2234443221111  00    1111             


Q ss_pred             HHhCCceEEEEEeccCCCcccCC-------------CcchhccCCccEEEEeceeecc-CCcCc-ccCCCccEEEcceee
Q 042585           92 AIERNVEELEVEHLRRLDTWNSL-------------PQMVLRSKSIKVLTLQNYKLES-LGNDD-VKLLSLRKLHLSDVY  156 (286)
Q Consensus        92 ~~~~~l~~L~l~~~~~~~~~~~l-------------~~~~~~~~~L~~L~L~~~~~~~-~~~~~-~~~~~L~~L~L~~~~  156 (286)
                       .-++++++++..... ...+.+             +.....+++|++|+|++|.+.. ..... ..+++|++|+|.+|.
T Consensus        64 -~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           64 -RFPKVRSVELKGKPH-FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             -HCTTCCEEEEECSCG-GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             -hCCCceEEeccCCCc-hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence             126799999983220 111221             1223478999999999988733 11122 269999999999997


Q ss_pred             -eChHHHHHHHhcCCCcceEEeeecccc-------ceee-cccCCceEEecCcc--cChhhHHHHHhcCCCccEEecccc
Q 042585          157 -ADDQVMNNLFAQSPLLQHLEFVRYNNL-------VNVS-SCKNLKHLDLCDGS--YTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       157 -~~~~~l~~l~~~cp~Le~L~l~~c~~~-------~~~~-~~~~L~~L~l~~~~--~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                       +++.++..+...||+|++|++++|...       ..+. .+++|++|++.++.  +++..+..+...+|+|++|++.+|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence             999999999999999999999987621       1222 27899999999875  667778788888999999999998


Q ss_pred             cCccccc---cccccccEEEeecc
Q 042585          226 NNIESIT---ISSLRLKKLIINTC  246 (286)
Q Consensus       226 ~~~~~~~---i~~p~L~~L~ls~c  246 (286)
                      ..++.+.   ...++|+.|+++.|
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             CcHHHHHHHHhcCCcceEcccccc
Confidence            6554421   23578888876544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=4.2e-19  Score=166.63  Aligned_cols=193  Identities=9%  Similarity=0.118  Sum_probs=123.4

Q ss_pred             CcccCC----CCCHHHHHHHHccC-ChhhHHHhhhhhhhhHhhhccCC-ceEeecCCCCCcchhhhHHHHHHHHHHHhHh
Q 042585           13 NVDRIS----ALPQPILQLIMSFL-PFKQVVQICMVSKVWLQAWHTFP-DLEIDKVKFLGPSKKLTVKTYGSEAALNFAN   86 (286)
Q Consensus        13 ~~d~i~----~LPdeil~~Ils~L-~~~d~~~~~~vskrW~~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   86 (286)
                      +.|+++    +||||++.+||+|| +.+|+++++.|||+|++++...+ .+.+.. .+..         +...++     
T Consensus         5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~~---------~~~~~~-----   69 (592)
T 3ogk_B            5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYTA---------TPDRLS-----   69 (592)
T ss_dssp             -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGGS---------CHHHHH-----
T ss_pred             hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-cccc---------ChHHHH-----
Confidence            345554    89999999999999 89999999999999999854333 222211 1111         111111     


Q ss_pred             HHHHHHHhCCceEEEEEeccCCCccc-C------------CCcchhccCCccEEEEeceeecc-CCcC-cccCCC-ccEE
Q 042585           87 RCISYAIERNVEELEVEHLRRLDTWN-S------------LPQMVLRSKSIKVLTLQNYKLES-LGND-DVKLLS-LRKL  150 (286)
Q Consensus        87 ~~~~~~~~~~l~~L~l~~~~~~~~~~-~------------l~~~~~~~~~L~~L~L~~~~~~~-~~~~-~~~~~~-L~~L  150 (286)
                           ..-++++++++..++. ...+ .            ++.....+++|++|+|++|.+.. .... ...+|+ |++|
T Consensus        70 -----~~~~~L~~L~L~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           70 -----RRFPNLRSLKLKGKPR-AAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             -----HHCTTCSEEEEECSCG-GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             -----HhCCCCeEEEecCCcc-hhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence                 0125688998872210 0000 0            11122278899999999887632 1111 122566 9999


Q ss_pred             Ecceee-eChHHHHHHHhcCCCcceEEeeecccc-------ceeec-ccCCceEEecCcccC---hhhHHHHHhcCCCcc
Q 042585          151 HLSDVY-ADDQVMNNLFAQSPLLQHLEFVRYNNL-------VNVSS-CKNLKHLDLCDGSYT---DEWLNSQISGLPLLE  218 (286)
Q Consensus       151 ~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~-------~~~~~-~~~L~~L~l~~~~~~---~~~l~~~~~~~p~L~  218 (286)
                      +|.+|. +++.++..+...||+|++|++++|...       ..+.. +++|++|++.++.++   ...+..+...+|+|+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            999988 888888888888999999999887521       11112 788888888876554   455667777888888


Q ss_pred             EEeccccc
Q 042585          219 QLHISLCN  226 (286)
Q Consensus       219 ~L~l~~c~  226 (286)
                      +|++.+|.
T Consensus       224 ~L~L~~~~  231 (592)
T 3ogk_B          224 SVKVGDFE  231 (592)
T ss_dssp             EEECSSCB
T ss_pred             EEeccCcc
Confidence            88888764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.22  E-value=9.6e-12  Score=108.29  Aligned_cols=156  Identities=18%  Similarity=0.213  Sum_probs=110.7

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeecc--CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCC
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES--LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPL  171 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~  171 (286)
                      ..+++.+++....    -...+..+..+++|++|++++|.+..  .......+++|++|+|+++.+++.....+ ..||+
T Consensus        69 ~~~l~~L~l~~n~----l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~  143 (336)
T 2ast_B           69 SQGVIAFRCPRSF----MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSN  143 (336)
T ss_dssp             HTTCSEEECTTCE----ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTT
T ss_pred             hccceEEEcCCcc----ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCC
Confidence            3566777666111    01122235578899999999988742  22334568999999999998887776664 45999


Q ss_pred             cceEEeeeccccce------eecccCCceEEecCc-ccChhhHHHHHhcCC-CccEEeccccc-Cccccc-----ccccc
Q 042585          172 LQHLEFVRYNNLVN------VSSCKNLKHLDLCDG-SYTDEWLNSQISGLP-LLEQLHISLCN-NIESIT-----ISSLR  237 (286)
Q Consensus       172 Le~L~l~~c~~~~~------~~~~~~L~~L~l~~~-~~~~~~l~~~~~~~p-~L~~L~l~~c~-~~~~~~-----i~~p~  237 (286)
                      |++|++++|....+      +..+++|++|++.+| .+++..+......+| +|++|++++|. .+++..     -..|+
T Consensus       144 L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~  223 (336)
T 2ast_B          144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN  223 (336)
T ss_dssp             CSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred             CCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence            99999998854321      222899999999988 888776767788899 99999999986 444322     23689


Q ss_pred             ccEEEeecccCCccccc
Q 042585          238 LKKLIINTCESNTIFSF  254 (286)
Q Consensus       238 L~~L~ls~c~~~~~~~~  254 (286)
                      |+.|++++|..++...+
T Consensus       224 L~~L~l~~~~~l~~~~~  240 (336)
T 2ast_B          224 LVHLDLSDSVMLKNDCF  240 (336)
T ss_dssp             CSEEECTTCTTCCGGGG
T ss_pred             CCEEeCCCCCcCCHHHH
Confidence            99999999986655433

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.19  E-value=2.5e-11  Score=95.54  Aligned_cols=102  Identities=18%  Similarity=0.173  Sum_probs=69.4

Q ss_pred             ccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceee-eChHHHHHHHhc---CCCcceEEeeeccccce
Q 042585          111 WNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQ---SPLLQHLEFVRYNNLVN  185 (286)
Q Consensus       111 ~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~---cp~Le~L~l~~c~~~~~  185 (286)
                      ...+|......-+|++|++++|.+.. ......+|++|++|+|++|. ++|.++..+...   ||+|++|++++|..   
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~---  126 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN---  126 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT---
T ss_pred             cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc---
Confidence            34555543445678888888887732 22334578888888888888 888888887763   66777777776653   


Q ss_pred             eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc
Q 042585          186 VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT  232 (286)
Q Consensus       186 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~  232 (286)
                                      ++|.++..+ ..+|+|++|++++|+.+++.+
T Consensus       127 ----------------ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          127 ----------------VTDKGIIAL-HHFRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             ----------------CCHHHHHHG-GGCTTCCEEEEESCTTCCCHH
T ss_pred             ----------------CCHHHHHHH-hcCCCCCEEECCCCCCCCchH
Confidence                            566666444 356777777777777666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.10  E-value=4.1e-10  Score=98.05  Aligned_cols=82  Identities=16%  Similarity=0.183  Sum_probs=50.6

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      ..++++|++....    -..+|..+..+++|++|+|+++.+.........+++|++|+|+++.++  .+..-+..+++|+
T Consensus        80 ~~~l~~L~L~~n~----l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~  153 (328)
T 4fcg_A           80 QPGRVALELRSVP----LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR  153 (328)
T ss_dssp             STTCCEEEEESSC----CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred             ccceeEEEccCCC----chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence            4678888887221    125666677777777777777766533233455777777777777643  1222245567777


Q ss_pred             eEEeeecc
Q 042585          174 HLEFVRYN  181 (286)
Q Consensus       174 ~L~l~~c~  181 (286)
                      .|++++|.
T Consensus       154 ~L~L~~n~  161 (328)
T 4fcg_A          154 ELSIRACP  161 (328)
T ss_dssp             EEEEEEET
T ss_pred             EEECCCCC
Confidence            77776653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.09  E-value=1.1e-10  Score=109.17  Aligned_cols=138  Identities=15%  Similarity=0.148  Sum_probs=90.3

Q ss_pred             hhccCCccEEEEeceeecc--CCcCcccCCCccEEEcce---ee-eCh----HHHHHHHhcCCCcceEEeeecccc-c--
Q 042585          118 VLRSKSIKVLTLQNYKLES--LGNDDVKLLSLRKLHLSD---VY-ADD----QVMNNLFAQSPLLQHLEFVRYNNL-V--  184 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L~~---~~-~~~----~~l~~l~~~cp~Le~L~l~~c~~~-~--  184 (286)
                      ...|++|++|+++.+.+..  .......+++|++|+|.+   +. +++    .++..++.+||+|+.|+++.|.+. .  
T Consensus       374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred             HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence            3456777777775444422  101122377777777763   22 443    466666777788888887765431 1  


Q ss_pred             ---eeec-ccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccccc-----ccccccEEEeecccCCcccccc
Q 042585          185 ---NVSS-CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITI-----SSLRLKKLIINTCESNTIFSFG  255 (286)
Q Consensus       185 ---~~~~-~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i-----~~p~L~~L~ls~c~~~~~~~~~  255 (286)
                         .+.. +++|+.|++.+|.+++..+..+...+++|++|++++|. +++.++     ..++|+.|++++|. ++..++.
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~  531 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQD  531 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTT
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHH
Confidence               1222 78899999988888887777778889999999999987 443322     25899999999997 6665444


Q ss_pred             cc
Q 042585          256 SI  257 (286)
Q Consensus       256 ~~  257 (286)
                      .+
T Consensus       532 ~l  533 (592)
T 3ogk_B          532 LM  533 (592)
T ss_dssp             GG
T ss_pred             HH
Confidence            33

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.07  E-value=4e-10  Score=98.15  Aligned_cols=58  Identities=19%  Similarity=0.280  Sum_probs=32.3

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY  156 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~  156 (286)
                      .++++|+++...   . ..+|..+..+++|++|+|+++.+.........+++|++|+|++|.
T Consensus       104 ~~L~~L~L~~n~---l-~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~  161 (328)
T 4fcg_A          104 SHLQHMTIDAAG---L-MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP  161 (328)
T ss_dssp             TTCSEEEEESSC---C-CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET
T ss_pred             CCCCEEECCCCC---c-cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC
Confidence            466677776211   1 155555666666666666666554332334456666666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.05  E-value=6.3e-11  Score=93.21  Aligned_cols=90  Identities=11%  Similarity=0.127  Sum_probs=74.5

Q ss_pred             CCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccceeecccCCceEEecCcccChhhHHHHHhc---CCCccEE
Q 042585          144 LLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISG---LPLLEQL  220 (286)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~---~p~L~~L  220 (286)
                      -.+|++|+|++|.+++.++..+ .+||+|++|+|++|..                   ++|+++..+...   +++|++|
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~-------------------ItD~gL~~L~~~~~~~~~L~~L  119 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHY-------------------IEDGCLERLSQLENLQKSMLEM  119 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTT-------------------CCHHHHHHHHTCHHHHHHCCEE
T ss_pred             CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCc-------------------cCHHHHHHHHhcccccCCCCEE
Confidence            3569999999999999988875 5788888777777653                   788888777763   7899999


Q ss_pred             ecccccCccccccc----cccccEEEeecccCCcccc
Q 042585          221 HISLCNNIESITIS----SLRLKKLIINTCESNTIFS  253 (286)
Q Consensus       221 ~l~~c~~~~~~~i~----~p~L~~L~ls~c~~~~~~~  253 (286)
                      ++++|..+++.++.    .++|++|++++|+.+++.+
T Consensus       120 ~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             EEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCHH
T ss_pred             EcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCchH
Confidence            99999999987764    5899999999999988754

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.02  E-value=2e-10  Score=72.06  Aligned_cols=40  Identities=23%  Similarity=0.306  Sum_probs=34.0

Q ss_pred             CcccCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhc
Q 042585           13 NVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWH   52 (286)
Q Consensus        13 ~~d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~   52 (286)
                      ..+.|+.||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            4567899999999999999999999999999999998644

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.98  E-value=2.8e-09  Score=85.67  Aligned_cols=103  Identities=20%  Similarity=0.246  Sum_probs=45.1

Q ss_pred             hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCCc
Q 042585          118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNLK  193 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L~  193 (286)
                      +..+++|++|++++|.+... +....+++|++|+++++.+++..... +..+|+|+.|++++|....    .+..+++|+
T Consensus        62 l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  139 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVN  139 (197)
T ss_dssp             GGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred             HhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence            44455555555555544221 22334555555555555433322222 2345555555555443221    111245555


Q ss_pred             eEEecCcc-cChhhHHHHHhcCCCccEEecccc
Q 042585          194 HLDLCDGS-YTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       194 ~L~l~~~~-~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      .|++++|. +++-   .....+|+|++|++++|
T Consensus       140 ~L~L~~n~~i~~~---~~l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          140 SIDLSYNGAITDI---MPLKTLPELKSLNIQFD  169 (197)
T ss_dssp             EEECCSCTBCCCC---GGGGGCSSCCEEECTTB
T ss_pred             EEEccCCCCcccc---HhhcCCCCCCEEECCCC
Confidence            55555443 3321   12344555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.94  E-value=5.8e-10  Score=104.29  Aligned_cols=128  Identities=13%  Similarity=0.153  Sum_probs=78.2

Q ss_pred             ccCCccEEEEeceeecc--CCcCcccCCCccEEEcc-----eee-eC----hHHHHHHHhcCCCcceEEeeecccc---c
Q 042585          120 RSKSIKVLTLQNYKLES--LGNDDVKLLSLRKLHLS-----DVY-AD----DQVMNNLFAQSPLLQHLEFVRYNNL---V  184 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L~-----~~~-~~----~~~l~~l~~~cp~Le~L~l~~c~~~---~  184 (286)
                      .|++|++|.+..+.+..  .......+|+|++|+|.     +|. ++    +.++..++..||+|+.|++++....   .
T Consensus       370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~  449 (594)
T 2p1m_B          370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFE  449 (594)
T ss_dssp             HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHH
Confidence            35666666554444421  00111246777777777     344 55    5666666677777777777541111   1


Q ss_pred             eeec-ccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccccc-----ccccccEEEeecccC
Q 042585          185 NVSS-CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITI-----SSLRLKKLIINTCES  248 (286)
Q Consensus       185 ~~~~-~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i-----~~p~L~~L~ls~c~~  248 (286)
                      .+.. +++|+.|++.+|.+++.++..+...+|+|++|++++|.. ++.++     ..++|+.|++++|+.
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            1222 677888888877777776666667788888888888765 33222     247888888888865

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.93  E-value=1.9e-09  Score=84.27  Aligned_cols=128  Identities=24%  Similarity=0.202  Sum_probs=86.5

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++|+++...  .....+|..+..+++|+.|++++|.+... .....+++|++|+|+++.++.. +..+...+|+|+.
T Consensus        24 ~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~   99 (168)
T 2ell_A           24 AAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTH   99 (168)
T ss_dssp             TSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCE
T ss_pred             ccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCE
Confidence            578888888222  12235666667888899999988887554 4556688899999988885442 3445566888888


Q ss_pred             EEeeeccccc-----eeecccCCceEEecCcccChhh--HHHHHhcCCCccEEeccccc
Q 042585          175 LEFVRYNNLV-----NVSSCKNLKHLDLCDGSYTDEW--LNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       175 L~l~~c~~~~-----~~~~~~~L~~L~l~~~~~~~~~--l~~~~~~~p~L~~L~l~~c~  226 (286)
                      |+++++....     .+..+++|+.|+++++.++...  .......+|+|++|++.+|.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            8888774321     2222788888888877655432  11355677888888887764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.90  E-value=8.7e-09  Score=82.78  Aligned_cols=123  Identities=17%  Similarity=0.229  Sum_probs=93.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .++++|++....     ...+..+..+++|++|+++++.+.. .......+++|++|+|+++.+++..... +..+|+|+
T Consensus        66 ~~L~~L~l~~n~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~  139 (197)
T 4ezg_A           66 HNIKDLTINNIH-----ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVN  139 (197)
T ss_dssp             TTCSEEEEESCC-----CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCC
T ss_pred             CCCCEEEccCCC-----CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCC
Confidence            689999999222     2233467789999999999988843 2345667999999999999977655554 46799999


Q ss_pred             eEEeeeccccce---eecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          174 HLEFVRYNNLVN---VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       174 ~L~l~~c~~~~~---~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      .|++++|.....   +..+++|++|++++|.+++-   .....+|+|++|++.++.
T Consensus       140 ~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~---~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          140 SIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC---TTGGGCSSCCEEEECBC-
T ss_pred             EEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh---HHhccCCCCCEEEeeCcc
Confidence            999998863433   33389999999999887753   245678889999888753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.88  E-value=2e-09  Score=95.55  Aligned_cols=154  Identities=18%  Similarity=0.266  Sum_probs=89.5

Q ss_pred             CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeecc-----CCcCcccC---------CCccEEEcceeeeCh
Q 042585           95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-----LGNDDVKL---------LSLRKLHLSDVYADD  159 (286)
Q Consensus        95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~~---------~~L~~L~L~~~~~~~  159 (286)
                      .++++|+++ +.-.......+|..+..+++|++|+|++|.+..     +......+         ++|++|+|+++.+++
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            567777776 221111112355566677777777777776621     00001112         778888887777665


Q ss_pred             HHHHH---HHhcCCCcceEEeeecccc--------c-eeecccCCceEEecCcccChhhHH---HHHhcCCCccEEeccc
Q 042585          160 QVMNN---LFAQSPLLQHLEFVRYNNL--------V-NVSSCKNLKHLDLCDGSYTDEWLN---SQISGLPLLEQLHISL  224 (286)
Q Consensus       160 ~~l~~---l~~~cp~Le~L~l~~c~~~--------~-~~~~~~~L~~L~l~~~~~~~~~l~---~~~~~~p~L~~L~l~~  224 (286)
                      .++..   .+..+++|+.|++++|...        . .+..+++|+.|+++++.+++.+..   .....+|+|++|++++
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence            55553   3446778888888776432        0 222377888888887776643322   3345678888888887


Q ss_pred             ccCccc----c--cc---ccccccEEEeecccC
Q 042585          225 CNNIES----I--TI---SSLRLKKLIINTCES  248 (286)
Q Consensus       225 c~~~~~----~--~i---~~p~L~~L~ls~c~~  248 (286)
                      |.--..    +  .+   ..++|+.|++++|..
T Consensus       254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             CCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            752211    0  11   147788888888753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.87  E-value=3.4e-09  Score=81.14  Aligned_cols=125  Identities=26%  Similarity=0.262  Sum_probs=78.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++++++...  ..+..+|..+..+++|+.|++++|.+... .....+++|++|+|+++.++.. +......+|+|+.
T Consensus        17 ~~l~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCB--CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCE
T ss_pred             ccCeEEEccCCc--CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCE
Confidence            467777777222  12235566666778888888888777443 4455678888888888875432 3445556788888


Q ss_pred             EEeeecccc-----ceeecccCCceEEecCcccChhhH--HHHHhcCCCccEEecc
Q 042585          175 LEFVRYNNL-----VNVSSCKNLKHLDLCDGSYTDEWL--NSQISGLPLLEQLHIS  223 (286)
Q Consensus       175 L~l~~c~~~-----~~~~~~~~L~~L~l~~~~~~~~~l--~~~~~~~p~L~~L~l~  223 (286)
                      |+++++...     ..+..+++|++|+++++.+++...  ......+|+|++|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            888766432     112237777888777776554211  1345667777777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.83  E-value=1.8e-09  Score=95.82  Aligned_cols=155  Identities=13%  Similarity=0.060  Sum_probs=96.2

Q ss_pred             CCceEEEEEecc-CCCcccCCCcchhcc---------CCccEEEEeceeec-cCCc----CcccCCCccEEEcceeeeCh
Q 042585           95 RNVEELEVEHLR-RLDTWNSLPQMVLRS---------KSIKVLTLQNYKLE-SLGN----DDVKLLSLRKLHLSDVYADD  159 (286)
Q Consensus        95 ~~l~~L~l~~~~-~~~~~~~l~~~~~~~---------~~L~~L~L~~~~~~-~~~~----~~~~~~~L~~L~L~~~~~~~  159 (286)
                      .++++|+++... .+.....++..+..+         ++|++|++++|.+. ...+    ....+++|++|+|+++.+++
T Consensus       122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  201 (386)
T 2ca6_A          122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP  201 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred             CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH
Confidence            678888887221 000112233333344         78888888888773 2111    22357888888888888777


Q ss_pred             HHHHHHHh----cCCCcceEEeeecccc----c----eeecccCCceEEecCcccChhhHHHHHh-----cCCCccEEec
Q 042585          160 QVMNNLFA----QSPLLQHLEFVRYNNL----V----NVSSCKNLKHLDLCDGSYTDEWLNSQIS-----GLPLLEQLHI  222 (286)
Q Consensus       160 ~~l~~l~~----~cp~Le~L~l~~c~~~----~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~-----~~p~L~~L~l  222 (286)
                      .++..+..    .+|+|+.|++++|...    .    .+..+++|++|++++|.+++.+...+..     .+++|++|++
T Consensus       202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L  281 (386)
T 2ca6_A          202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL  281 (386)
T ss_dssp             HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred             hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEEC
Confidence            76555443    7888888888877542    1    1223788888888888777654333322     2788888888


Q ss_pred             ccccCcc----ccc--c-c-cccccEEEeecccCC
Q 042585          223 SLCNNIE----SIT--I-S-SLRLKKLIINTCESN  249 (286)
Q Consensus       223 ~~c~~~~----~~~--i-~-~p~L~~L~ls~c~~~  249 (286)
                      ++|.--.    .+.  + . .|+|+.|++++|..-
T Consensus       282 ~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            8875332    121  1 2 478888888887543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.82  E-value=1.8e-08  Score=87.81  Aligned_cols=144  Identities=15%  Similarity=0.127  Sum_probs=90.7

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++++++...    -..++. +..+++|+.|+++++.+... +....+++|++|+++++.+++...   ...+|+|++
T Consensus       177 ~~L~~L~l~~n~----l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~  247 (347)
T 4fmz_A          177 TDLYSLSLNYNQ----IEDISP-LASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKITDLSP---LANLSQLTW  247 (347)
T ss_dssp             TTCSEEECTTSC----CCCCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred             CCCCEEEccCCc----cccccc-ccCCCccceeecccCCCCCC-chhhcCCcCCEEEccCCccCCCcc---hhcCCCCCE
Confidence            678888887211    112222 55678888888888777442 225567888888888887433221   567888888


Q ss_pred             EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc--c-cccccccEEEeecccCC
Q 042585          175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI--T-ISSLRLKKLIINTCESN  249 (286)
Q Consensus       175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~--~-i~~p~L~~L~ls~c~~~  249 (286)
                      |++++|...  ..+..+++|++|+++++.+++-   .....+++|++|++++|.-....  . -..++|+.|++++|...
T Consensus       248 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          248 LEIGTNQISDINAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             EECCCCccCCChhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            888876432  2222377888888887766543   33567788888888887432111  1 12477888888887643


Q ss_pred             c
Q 042585          250 T  250 (286)
Q Consensus       250 ~  250 (286)
                      +
T Consensus       325 ~  325 (347)
T 4fmz_A          325 D  325 (347)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.82  E-value=2.9e-09  Score=83.19  Aligned_cols=125  Identities=20%  Similarity=0.195  Sum_probs=91.4

Q ss_pred             cCCccEEEEeceeec--cCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccceee---c-ccCCce
Q 042585          121 SKSIKVLTLQNYKLE--SLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVS---S-CKNLKH  194 (286)
Q Consensus       121 ~~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---~-~~~L~~  194 (286)
                      .++|+.|++++|.+.  ........+++|++|+|.++.++..   ..+..+++|+.|+++++.....+.   . +++|+.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            378999999999886  3433446799999999999995543   345679999999999876433222   2 899999


Q ss_pred             EEecCcccChhhHHHHHhcCCCccEEecccccCccc------cccccccccEEEeecccC
Q 042585          195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIES------ITISSLRLKKLIINTCES  248 (286)
Q Consensus       195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~------~~i~~p~L~~L~ls~c~~  248 (286)
                      |+++++.+++-........+++|++|++++|.-...      ..-..|+|+.|++++|..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            999998876521113456889999999999743221      112258999999999854

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.80  E-value=4.5e-09  Score=80.45  Aligned_cols=121  Identities=20%  Similarity=0.180  Sum_probs=86.0

Q ss_pred             cCCccEEEEeceeec--cCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccccee----ecccCCce
Q 042585          121 SKSIKVLTLQNYKLE--SLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNV----SSCKNLKH  194 (286)
Q Consensus       121 ~~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~----~~~~~L~~  194 (286)
                      .++|+.|++++|.+.  ........+++|++|++.++.+++.   ..+..+++|+.|+++++.....+    ..+++|+.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            378899999999886  3434446799999999999985543   34567899999999987543212    12899999


Q ss_pred             EEecCcccChhhHHHHHhcCCCccEEecccccCccccc------c-ccccccEEEeec
Q 042585          195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT------I-SSLRLKKLIINT  245 (286)
Q Consensus       195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~------i-~~p~L~~L~ls~  245 (286)
                      |+++++.+++-........+|+|++|++++|.- +.+.      + ..|+|+.|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCCC
Confidence            999988877632224457889999999999742 2221      1 147888887653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.79  E-value=2.7e-08  Score=85.70  Aligned_cols=119  Identities=20%  Similarity=0.189  Sum_probs=56.9

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++|+++...    -..++. +..+++|++|+++++.+... +....+++|++|+|+++.+++-  .. +..+++|+.
T Consensus        63 ~~L~~L~L~~n~----i~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~  133 (308)
T 1h6u_A           63 NNLIGLELKDNQ----ITDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQV  133 (308)
T ss_dssp             TTCCEEECCSSC----CCCCGG-GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCE
T ss_pred             CCCCEEEccCCc----CCCChh-HccCCCCCEEEccCCcCCCc-hhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCE
Confidence            466666666111    112222 45566666666666655332 2344466666666666653321  11 345566666


Q ss_pred             EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      |+++++...  ..+..+++|+.|+++++.+++-.  . ...+++|++|+++++
T Consensus       134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDN  183 (308)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSS
T ss_pred             EECCCCccCcCccccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEECCCC
Confidence            666554321  11222455555555554443311  1 334455555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=4.7e-08  Score=86.10  Aligned_cols=158  Identities=16%  Similarity=0.094  Sum_probs=107.7

Q ss_pred             CCceEEEEEec-cC-----CCcccCCCcchhccCCccEEEEecee-eccCCcCcccCCCccEEEcceeeeChHHHHHHHh
Q 042585           95 RNVEELEVEHL-RR-----LDTWNSLPQMVLRSKSIKVLTLQNYK-LESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFA  167 (286)
Q Consensus        95 ~~l~~L~l~~~-~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~  167 (286)
                      ++++.|.+... ..     +.....+...+..+++|++|.|.++. +..  +. ...++|++|.|..+.+++.++..+..
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l--~~-~~~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI--GK-KPRPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC--CS-CBCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee--cc-ccCCCCcEEEEecCCCChHHHHHHHH
Confidence            68999988621 10     00112355566788999999999873 222  22 34899999999988899999888775


Q ss_pred             -cCCCcceEEeeeccc-------c----ceee--cccCCceEEecCcccChhhHHHHHh--cCCCccEEecccccCcccc
Q 042585          168 -QSPLLQHLEFVRYNN-------L----VNVS--SCKNLKHLDLCDGSYTDEWLNSQIS--GLPLLEQLHISLCNNIESI  231 (286)
Q Consensus       168 -~cp~Le~L~l~~c~~-------~----~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~--~~p~L~~L~l~~c~~~~~~  231 (286)
                       .+|+|+.|+|..+..       .    ..+.  .+|+|++|++.+|.+++.....+..  .+|+|++|+++.+. +++.
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~  294 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDE  294 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHH
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChH
Confidence             699999999963211       1    1122  1799999999998887654434432  57899999997753 4443


Q ss_pred             cc--------ccccccEEEeecccCCcccccccc
Q 042585          232 TI--------SSLRLKKLIINTCESNTIFSFGSI  257 (286)
Q Consensus       232 ~i--------~~p~L~~L~ls~c~~~~~~~~~~~  257 (286)
                      +.        ..++|+.|++++|. +++.....+
T Consensus       295 G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l  327 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINMKYNY-LSDEMKKEL  327 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHH
T ss_pred             HHHHHHhhcccCCcceEEECCCCc-CCHHHHHHH
Confidence            21        13789999999884 555444333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.76  E-value=5.2e-09  Score=94.79  Aligned_cols=154  Identities=15%  Similarity=0.158  Sum_probs=102.8

Q ss_pred             hCCceEEEEEecc-CCCcccCCCcchhccCCccEEEEeceeecc--CCcCcccCC----CccEEEcceeeeChHH---HH
Q 042585           94 ERNVEELEVEHLR-RLDTWNSLPQMVLRSKSIKVLTLQNYKLES--LGNDDVKLL----SLRKLHLSDVYADDQV---MN  163 (286)
Q Consensus        94 ~~~l~~L~l~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~----~L~~L~L~~~~~~~~~---l~  163 (286)
                      .+++++++++.+. .+.....++..+..+++|++|+|+++.+..  .......++    +|++|+|+++.+++.+   +.
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            4789999998222 111112455667778999999999987722  101122344    7999999999877644   44


Q ss_pred             HHHhcCCCcceEEeeeccccc----eeec-----ccCCceEEecCcccChhhH---HHHHhcCCCccEEecccccCcccc
Q 042585          164 NLFAQSPLLQHLEFVRYNNLV----NVSS-----CKNLKHLDLCDGSYTDEWL---NSQISGLPLLEQLHISLCNNIESI  231 (286)
Q Consensus       164 ~l~~~cp~Le~L~l~~c~~~~----~~~~-----~~~L~~L~l~~~~~~~~~l---~~~~~~~p~L~~L~l~~c~~~~~~  231 (286)
                      ..+..+|+|++|+++++....    .+..     .++|++|++.+|.+++...   ......+++|++|++++|. +++.
T Consensus       107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~  185 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEA  185 (461)
T ss_dssp             HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred             HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchH
Confidence            455779999999999775321    1111     3579999999888877543   3444568999999999976 3332


Q ss_pred             ccc---------cccccEEEeecccC
Q 042585          232 TIS---------SLRLKKLIINTCES  248 (286)
Q Consensus       232 ~i~---------~p~L~~L~ls~c~~  248 (286)
                      +..         .++|+.|++++|..
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n~l  211 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESCGV  211 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred             HHHHHHHHHhcCCCCceEEEccCCCC
Confidence            211         35899999999843

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.75  E-value=4.1e-08  Score=85.58  Aligned_cols=119  Identities=19%  Similarity=0.215  Sum_probs=67.2

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      +++++|+++...    -..++. +..+++|++|++++|.+... +....+++|++|+|+++.+++...   ...+++|+.
T Consensus        66 ~~L~~L~l~~n~----i~~~~~-~~~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~  136 (347)
T 4fmz_A           66 TNLEYLNLNGNQ----ITDISP-LSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISDISP---LANLTKMYS  136 (347)
T ss_dssp             TTCCEEECCSSC----CCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCE
T ss_pred             CCccEEEccCCc----cccchh-hhcCCcCCEEEccCCcccCc-hHHcCCCcCCEEECcCCcccCchh---hccCCceeE
Confidence            567777777211    112333 56677777777777766442 345567777777777777332211   456777777


Q ss_pred             EEeeeccccce---eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          175 LEFVRYNNLVN---VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       175 L~l~~c~~~~~---~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      |++++|.....   +..+++|++|++.++.+.+..   ....+++|++|++++|
T Consensus       137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYN  187 (347)
T ss_dssp             EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECTTS
T ss_pred             EECCCCCCcccccchhhCCCCcEEEecCCCcCCch---hhccCCCCCEEEccCC
Confidence            77776643322   222566666666655444321   1345566666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.74  E-value=4.7e-08  Score=83.50  Aligned_cols=75  Identities=23%  Similarity=0.247  Sum_probs=32.5

Q ss_pred             cCCCcceEEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc-c-ccccccEEEe
Q 042585          168 QSPLLQHLEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT-I-SSLRLKKLII  243 (286)
Q Consensus       168 ~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~-i-~~p~L~~L~l  243 (286)
                      .+++|+.|+++++...  ..+..+++|+.|+++++.+++-.  . ...+++|++|++++|. ++.+. + ..++|+.|++
T Consensus       132 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l  207 (291)
T 1h6t_A          132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL  207 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEE
T ss_pred             CCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEEC
Confidence            3444555555443211  11222455555555554443321  1 3445555555555542 11111 1 1356666666


Q ss_pred             ecc
Q 042585          244 NTC  246 (286)
Q Consensus       244 s~c  246 (286)
                      +++
T Consensus       208 ~~n  210 (291)
T 1h6t_A          208 FSQ  210 (291)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.74  E-value=2.3e-08  Score=86.24  Aligned_cols=150  Identities=15%  Similarity=0.139  Sum_probs=91.5

Q ss_pred             hCCceEEEEEeccCCCcccCCCcch--hccCCccEEEEeceeeccCCcCcccC-----CCccEEEcceeeeChHHHHHHH
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMV--LRSKSIKVLTLQNYKLESLGNDDVKL-----LSLRKLHLSDVYADDQVMNNLF  166 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~l~~l~  166 (286)
                      -.++++|+++...   -...+|..+  ...++|++|+|+++.+.........+     ++|++|+|+++.++..... .+
T Consensus        94 l~~L~~L~L~~n~---l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~  169 (312)
T 1wwl_A           94 ISGLQELTLENLE---VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QV  169 (312)
T ss_dssp             TSCCCEEEEEEEB---CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TC
T ss_pred             cCCccEEEccCCc---ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH-Hh
Confidence            3688888888322   122344443  56788888888888774431222233     7888888888874332111 23


Q ss_pred             hcCCCcceEEeeeccccc------ee--ecccCCceEEecCcccCh--hhHHHHHhcCCCccEEecccccCcccc--c--
Q 042585          167 AQSPLLQHLEFVRYNNLV------NV--SSCKNLKHLDLCDGSYTD--EWLNSQISGLPLLEQLHISLCNNIESI--T--  232 (286)
Q Consensus       167 ~~cp~Le~L~l~~c~~~~------~~--~~~~~L~~L~l~~~~~~~--~~l~~~~~~~p~L~~L~l~~c~~~~~~--~--  232 (286)
                      ..+++|+.|+++++....      .+  ..+++|++|+++++.++.  .....+...+++|++|+++++.--...  .  
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  249 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC  249 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence            467888888888765221      12  337888888888877663  222244457788888888886432211  1  


Q ss_pred             cccccccEEEeeccc
Q 042585          233 ISSLRLKKLIINTCE  247 (286)
Q Consensus       233 i~~p~L~~L~ls~c~  247 (286)
                      ...++|+.|+++++.
T Consensus       250 ~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          250 DWPSQLNSLNLSFTG  264 (312)
T ss_dssp             CCCTTCCEEECTTSC
T ss_pred             hhcCCCCEEECCCCc
Confidence            113678888887764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.73  E-value=4.8e-08  Score=84.07  Aligned_cols=142  Identities=18%  Similarity=0.152  Sum_probs=104.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++|+++...    -..+ ..+..+++|++|++++|.+... +....+++|++|+|+++.+++..-   +..+++|+.
T Consensus        85 ~~L~~L~L~~n~----l~~~-~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~  155 (308)
T 1h6u_A           85 TKITELELSGNP----LKNV-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQY  155 (308)
T ss_dssp             CSCCEEECCSCC----CSCC-GGGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCE
T ss_pred             CCCCEEEccCCc----CCCc-hhhcCCCCCCEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCcCcc---ccCCCCccE
Confidence            689999998221    1122 3577889999999999988553 346679999999999998543221   668999999


Q ss_pred             EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecccC
Q 042585          175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTCES  248 (286)
Q Consensus       175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~~  248 (286)
                      |++++|...  ..+..+++|+.|+++++.+++-.   ....+++|++|++++|.--....+. .++|+.|+++++.-
T Consensus       156 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS---PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred             EEccCCcCCCChhhcCCCCCCEEECCCCccCcCh---hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence            999987432  22334899999999988776532   1578999999999998533222232 58999999998753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.72  E-value=2.2e-08  Score=94.16  Aligned_cols=123  Identities=23%  Similarity=0.242  Sum_probs=73.5

Q ss_pred             hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceE
Q 042585          118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHL  195 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L  195 (286)
                      +..+++|+.|+|++|.+... +....+++|+.|+|+++.+.+-  .. +..+|+|+.|+|++|...  ..+..+++|+.|
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L  158 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDI--NG-LVHLPQLESLYLGNNKITDITVLSRLTKLDTL  158 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-TTSTTCTTCCEEECTTSCCCCC--GG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEE
T ss_pred             hccCCCCCEEECcCCCCCCC-hhhccCCCCCEEEecCCCCCCC--cc-ccCCCccCEEECCCCccCCchhhcccCCCCEE
Confidence            55667777777777666432 3445577777777777764331  11 456777777777766432  222237777777


Q ss_pred             EecCcccChhhHHHHHhcCCCccEEecccccCcccc-cc-ccccccEEEeecccC
Q 042585          196 DLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI-TI-SSLRLKKLIINTCES  248 (286)
Q Consensus       196 ~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~-~i-~~p~L~~L~ls~c~~  248 (286)
                      ++++|.+.+-.  . ...+++|+.|++++|.- ..+ .+ ..++|+.|++++|..
T Consensus       159 ~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~i-~~l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          159 SLEDNQISDIV--P-LAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             ECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEECCSEEE
T ss_pred             ECcCCcCCCch--h-hccCCCCCEEECcCCCC-CCChHHccCCCCCEEEccCCcC
Confidence            77777655431  1 56677777777777632 222 11 136778888777643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.72  E-value=3.2e-09  Score=94.02  Aligned_cols=162  Identities=14%  Similarity=0.100  Sum_probs=108.9

Q ss_pred             HHHHHhCCceEEEEE-eccCCCcccCCCcchh-ccCCccEEEEeceeecc--CCcCcccCCCccEEEcceeeeChHHHHH
Q 042585           89 ISYAIERNVEELEVE-HLRRLDTWNSLPQMVL-RSKSIKVLTLQNYKLES--LGNDDVKLLSLRKLHLSDVYADDQVMNN  164 (286)
Q Consensus        89 ~~~~~~~~l~~L~l~-~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~  164 (286)
                      +...+..++++++++ +.-.+.....+...+. .+++|++|+|++|.+..  .......+++|++|+|+++.+++.+...
T Consensus        66 l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~  145 (372)
T 3un9_A           66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD  145 (372)
T ss_dssp             HHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred             HHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence            334446789999998 2211111122222222 23799999999998833  1122334778999999999998887776


Q ss_pred             HHh----cCCCcceEEeeecccc----cee----ecccCCceEEecCcccChhhHHHH---HhcCCCccEEecccccCcc
Q 042585          165 LFA----QSPLLQHLEFVRYNNL----VNV----SSCKNLKHLDLCDGSYTDEWLNSQ---ISGLPLLEQLHISLCNNIE  229 (286)
Q Consensus       165 l~~----~cp~Le~L~l~~c~~~----~~~----~~~~~L~~L~l~~~~~~~~~l~~~---~~~~p~L~~L~l~~c~~~~  229 (286)
                      +..    .+++|++|++++|...    ..+    ...++|++|++++|.+++.+...+   ...+++|++|++++|. ++
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~  224 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AG  224 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred             HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence            653    5789999999988542    112    227899999999998887654433   4567899999999984 33


Q ss_pred             cccc--------ccccccEEEeecccCCccc
Q 042585          230 SITI--------SSLRLKKLIINTCESNTIF  252 (286)
Q Consensus       230 ~~~i--------~~p~L~~L~ls~c~~~~~~  252 (286)
                      +.+.        ..+.|+.|+++++. ++..
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~  254 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNE-LSSE  254 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCC-CCHH
Confidence            3221        24789999999885 4443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.71  E-value=4.7e-08  Score=83.49  Aligned_cols=142  Identities=16%  Similarity=0.176  Sum_probs=95.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .+++++++....    -..++ .+..+++|+.|+++++.+....+ ...+++|++|+|+++.+++-  .. +..+++|+.
T Consensus        46 ~~L~~L~l~~~~----i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~  116 (291)
T 1h6t_A           46 NSIDQIIANNSD----IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKS  116 (291)
T ss_dssp             HTCCEEECTTSC----CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCE
T ss_pred             CcccEEEccCCC----cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC--hh-hccCCCCCE
Confidence            467777776211    11233 35678889999998888755323 66788899999988885442  22 567888999


Q ss_pred             EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecccC
Q 042585          175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTCES  248 (286)
Q Consensus       175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~~  248 (286)
                      |+++++...  ..+..+++|+.|+++++.+++-   .....+++|++|++++|.--....+. .++|+.|+++++.-
T Consensus       117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcC
Confidence            998876432  2233388899999988776653   34567888999998887422211222 47888888888743

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.70  E-value=3.9e-08  Score=92.45  Aligned_cols=101  Identities=20%  Similarity=0.169  Sum_probs=42.4

Q ss_pred             hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceE
Q 042585          118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHL  195 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L  195 (286)
                      +..+++|+.|+|++|.+... +....+++|+.|+|+++.+++-  . -+..+++|+.|++++|...  ..+..+++|+.|
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L  136 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESL  136 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEE
T ss_pred             HccCCCCCEEEeeCCCCCCC-hhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEecCCCCCCCccccCCCccCEE
Confidence            33445555555555444322 1133455555555555442221  1 1233455555555443221  112224555555


Q ss_pred             EecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          196 DLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       196 ~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      +++++.+++-   .....+++|+.|++++|
T Consensus       137 ~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A          137 YLGNNKITDI---TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             ECCSSCCCCC---GGGGSCTTCSEEECCSS
T ss_pred             ECCCCccCCc---hhhcccCCCCEEECcCC
Confidence            5554443321   22334455555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.69  E-value=7.7e-09  Score=93.67  Aligned_cols=130  Identities=19%  Similarity=0.121  Sum_probs=70.6

Q ss_pred             CceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeeccC------CcCcccCCCccEEEcceeeeChHHHHH---H
Q 042585           96 NVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL------GNDDVKLLSLRKLHLSDVYADDQVMNN---L  165 (286)
Q Consensus        96 ~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~------~~~~~~~~~L~~L~L~~~~~~~~~l~~---l  165 (286)
                      ++++|+++ +.-.......++..+..+++|++|++++|.+...      ......+++|++|+|++|.+++.++..   .
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            67777776 2110111112455556778888888887766220      011124677888888887776665333   3


Q ss_pred             HhcCCCcceEEeeeccccc----eeec-----ccCCceEEecCcccChhhH---HHHHhcCCCccEEecccc
Q 042585          166 FAQSPLLQHLEFVRYNNLV----NVSS-----CKNLKHLDLCDGSYTDEWL---NSQISGLPLLEQLHISLC  225 (286)
Q Consensus       166 ~~~cp~Le~L~l~~c~~~~----~~~~-----~~~L~~L~l~~~~~~~~~l---~~~~~~~p~L~~L~l~~c  225 (286)
                      +..+|+|++|+++++....    .+..     .++|++|++.+|.+++.+.   ......+++|++|++++|
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence            3457778888777654310    1111     2466666666665554432   222344566666666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.65  E-value=3.5e-08  Score=83.35  Aligned_cols=146  Identities=18%  Similarity=0.155  Sum_probs=74.6

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .++++|+++...    -..+ ..+..+++|++|++++|.+....+. ...+++|++|+|+++.++... ...+..+++|+
T Consensus        63 ~~L~~L~l~~n~----l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  136 (272)
T 3rfs_A           63 PNVRYLALGGNK----LHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP-DGVFDKLTNLT  136 (272)
T ss_dssp             TTCCEEECTTSC----CCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCC
T ss_pred             CCCcEEECCCCC----CCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC-HHHhccCCCCC
Confidence            456666666111    0111 2455666777777777666432222 345677777777766633211 11234566777


Q ss_pred             eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc--cc-ccccccEEEeecc
Q 042585          174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI--TI-SSLRLKKLIINTC  246 (286)
Q Consensus       174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~--~i-~~p~L~~L~ls~c  246 (286)
                      .|+++++....    .+..+++|+.|++.++.++.-. ......+++|++|++++|.--...  .+ ..++|+.|+++++
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            77776653221    1222667777777766554311 022345677777777665321111  11 2366777777665


Q ss_pred             c
Q 042585          247 E  247 (286)
Q Consensus       247 ~  247 (286)
                      +
T Consensus       216 ~  216 (272)
T 3rfs_A          216 P  216 (272)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.65  E-value=1.2e-07  Score=86.15  Aligned_cols=100  Identities=23%  Similarity=0.190  Sum_probs=46.3

Q ss_pred             hccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEE
Q 042585          119 LRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLD  196 (286)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~  196 (286)
                      ..+++|+.|++++|.+... +....+++|++|+++++.++...  . ...+++|+.|++++|...  ..+..+++|+.|+
T Consensus       240 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~  315 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNIS--P-LAGLTALTNLELNENQLEDISPISNLKNLTYLT  315 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred             hcCCCCCEEECCCCccccc-hhhhcCCCCCEEECCCCccCccc--c-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEE
Confidence            3445555555555544322 11334555555555555522211  1 344555555555544321  1122255566666


Q ss_pred             ecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          197 LCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      ++++.+++..  . ...+++|++|++++|
T Consensus       316 L~~n~l~~~~--~-~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          316 LYFNNISDIS--P-VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             CCSSCCSCCG--G-GGGCTTCCEEECCSS
T ss_pred             CcCCcCCCch--h-hccCccCCEeECCCC
Confidence            6555444321  1 345555555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.65  E-value=5.4e-09  Score=89.68  Aligned_cols=168  Identities=17%  Similarity=0.145  Sum_probs=98.2

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC--cCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG--NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|+++...    -..+|..+..+++|++|+++++.+....  .....+++|++|+++++.++... ...+..+++|
T Consensus        78 ~~L~~L~Ls~n~----i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L  152 (306)
T 2z66_A           78 TSLKYLDLSFNG----VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSL  152 (306)
T ss_dssp             SCCCEEECCSCS----EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTC
T ss_pred             cccCEEECCCCc----cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCC
Confidence            456666665111    1234455566777778877777664321  23445778888888877632211 1224567888


Q ss_pred             ceEEeeeccccc-----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcc--cccc-ccccccEEEee
Q 042585          173 QHLEFVRYNNLV-----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIE--SITI-SSLRLKKLIIN  244 (286)
Q Consensus       173 e~L~l~~c~~~~-----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~--~~~i-~~p~L~~L~ls  244 (286)
                      +.|+++++....     .+..+++|+.|+++++.++.... .....+++|++|+++++.-..  ...+ ..++|+.|+++
T Consensus       153 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  231 (306)
T 2z66_A          153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  231 (306)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred             CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence            888888764322     12227888999988876654211 234577889999998874322  1122 24789999999


Q ss_pred             cccCCccc--ccccc--ceeeeccC-CCC
Q 042585          245 TCESNTIF--SFGSI--ALFSLALR-KPL  268 (286)
Q Consensus       245 ~c~~~~~~--~~~~~--~l~s~~~~-~~~  268 (286)
                      ++...+..  .+..+  .+..+.+. .|+
T Consensus       232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          232 LNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             TSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             CCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            88543322  23332  34555554 355

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.65  E-value=2e-08  Score=86.15  Aligned_cols=153  Identities=16%  Similarity=0.110  Sum_probs=104.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .++++|+++...  .........+..+++|++|+++++.+.... .....+++|++|+|+++.+++..+...+..+++|+
T Consensus       101 ~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A          101 EQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  178 (306)
T ss_dssp             TTCCEEECTTSE--EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCEEECCCCc--ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence            578888887111  011111235667899999999998874322 23456899999999999865533344466799999


Q ss_pred             eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc--ccc-c-ccccEEEeec
Q 042585          174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI--TIS-S-LRLKKLIINT  245 (286)
Q Consensus       174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~--~i~-~-p~L~~L~ls~  245 (286)
                      .|+++++....    .+..+++|+.|+++++.++.... .....+++|++|+++++.-....  .+. . ++|+.|++++
T Consensus       179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred             EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence            99999875432    22338999999999887654211 22467899999999998533221  122 2 4899999998


Q ss_pred             ccCCc
Q 042585          246 CESNT  250 (286)
Q Consensus       246 c~~~~  250 (286)
                      ++...
T Consensus       258 N~~~~  262 (306)
T 2z66_A          258 NDFAC  262 (306)
T ss_dssp             CCEEC
T ss_pred             CCeec
Confidence            76443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.64  E-value=4.1e-08  Score=82.75  Aligned_cols=146  Identities=20%  Similarity=0.214  Sum_probs=93.9

Q ss_pred             CCceEEEEEeccCCCcccCCCc-chhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQ-MVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|+++...    -..++. .+..+++|++|+++++.+....+. ...+++|++|+|.++.++.-.. ..+..+++|
T Consensus        37 ~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLDLQSNK----LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNL  111 (270)
T ss_dssp             TTCSEEECCSSC----CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSC
T ss_pred             CCCCEEECcCCC----CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCC
Confidence            467888887221    123333 456788999999988877543233 3468899999998887432111 234568889


Q ss_pred             ceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEee
Q 042585          173 QHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIIN  244 (286)
Q Consensus       173 e~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls  244 (286)
                      +.|+++++...    ..+..+++|++|+++++.++.-.. .....+++|++|+++++.- +.+.   + ..++|+.|+++
T Consensus       112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLD  189 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECC
T ss_pred             CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcC-cEeChhHhccCCCcCEEECC
Confidence            99999876432    113337889999998876553211 2245678899999888632 2221   2 24788888888


Q ss_pred             ccc
Q 042585          245 TCE  247 (286)
Q Consensus       245 ~c~  247 (286)
                      ++.
T Consensus       190 ~N~  192 (270)
T 2o6q_A          190 NNQ  192 (270)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.63  E-value=8.8e-08  Score=87.26  Aligned_cols=149  Identities=21%  Similarity=0.135  Sum_probs=90.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .++++|+++...   -....|..+..+++|++|+|+++.+....+ ...++++|++|+|+++.+.... ...+..+++|+
T Consensus        56 ~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~  131 (477)
T 2id5_A           56 PHLEELELNENI---VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLK  131 (477)
T ss_dssp             TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCC
T ss_pred             CCCCEEECCCCc---cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC-hhHccccccCC
Confidence            578888887211   112224556678889999998887754322 2356888999999888743211 11245688888


Q ss_pred             eEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcc--cccc-ccccccEEEeecc
Q 042585          174 HLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIE--SITI-SSLRLKKLIINTC  246 (286)
Q Consensus       174 ~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~--~~~i-~~p~L~~L~ls~c  246 (286)
                      .|+++++...    ..+..+++|+.|++.++.++.-.. .....+++|+.|++.++..-.  ...+ ..++|+.|++++|
T Consensus       132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred             EEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence            8888876432    223347888888888776554221 345677788888777753211  1111 1245555555555


Q ss_pred             cC
Q 042585          247 ES  248 (286)
Q Consensus       247 ~~  248 (286)
                      ..
T Consensus       211 ~~  212 (477)
T 2id5_A          211 PY  212 (477)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.62  E-value=3.7e-08  Score=83.14  Aligned_cols=147  Identities=18%  Similarity=0.162  Sum_probs=103.7

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      ..+++++.+....     ..-...+..+++|++|+++++.+... +....+++|++|+|+++.++... ...+..+++|+
T Consensus        40 l~~L~~L~l~~~~-----i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  112 (272)
T 3rfs_A           40 LNSIDQIIANNSD-----IKSVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLK  112 (272)
T ss_dssp             HTTCCEEECTTSC-----CCCCTTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCC
T ss_pred             ccceeeeeeCCCC-----cccccccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCC
Confidence            3678888887211     11223467899999999999988553 45667999999999999854321 12346799999


Q ss_pred             eEEeeeccccce----eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeec
Q 042585          174 HLEFVRYNNLVN----VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINT  245 (286)
Q Consensus       174 ~L~l~~c~~~~~----~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~  245 (286)
                      .|+++++.....    +..+++|+.|++.++.++.-. ......+++|++|++++|.- +.+.   + ..++|+.|++++
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCc-CccCHHHhcCCccCCEEECCC
Confidence            999998754311    334899999999988766321 13346789999999999842 2222   2 248999999998


Q ss_pred             ccCC
Q 042585          246 CESN  249 (286)
Q Consensus       246 c~~~  249 (286)
                      +..-
T Consensus       191 N~l~  194 (272)
T 3rfs_A          191 NQLK  194 (272)
T ss_dssp             SCCS
T ss_pred             CcCC
Confidence            8543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.62  E-value=5.5e-08  Score=83.67  Aligned_cols=150  Identities=14%  Similarity=0.122  Sum_probs=80.3

Q ss_pred             hCCceEEEEEeccCCCcccCCCcch--hccCCccEEEEeceeeccCCc-----CcccCCCccEEEcceeeeChHHHHHHH
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMV--LRSKSIKVLTLQNYKLESLGN-----DDVKLLSLRKLHLSDVYADDQVMNNLF  166 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~  166 (286)
                      ..++++|+++...   .....|..+  ...++|+.|+|+++.+....+     ....+++|++|+|+++.++...- ..+
T Consensus        90 ~~~L~~L~l~~n~---l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~  165 (310)
T 4glp_A           90 YSRLKELTLEDLK---ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC-EQV  165 (310)
T ss_dssp             HSCCCEEEEESCC---CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT-TSC
T ss_pred             cCceeEEEeeCCE---eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH-HHh
Confidence            4679999998222   112333333  556777777777776633111     11247777777777776422111 123


Q ss_pred             hcCCCcceEEeeeccccc------ee--ecccCCceEEecCcccCh--hhHHHHHhcCCCccEEecccccCccc----cc
Q 042585          167 AQSPLLQHLEFVRYNNLV------NV--SSCKNLKHLDLCDGSYTD--EWLNSQISGLPLLEQLHISLCNNIES----IT  232 (286)
Q Consensus       167 ~~cp~Le~L~l~~c~~~~------~~--~~~~~L~~L~l~~~~~~~--~~l~~~~~~~p~L~~L~l~~c~~~~~----~~  232 (286)
                      ..+++|+.|+++++....      ..  ..+++|++|+++++.++.  .....+...+++|++|+++++.--..    +.
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~  245 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP  245 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence            456777777777664221      11  226677777777766642  11112345667777777777532211    11


Q ss_pred             cc--cccccEEEeeccc
Q 042585          233 IS--SLRLKKLIINTCE  247 (286)
Q Consensus       233 i~--~p~L~~L~ls~c~  247 (286)
                      -.  .++|+.|+++++.
T Consensus       246 ~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          246 RCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             SCCCCTTCCCEECCSSC
T ss_pred             hccCcCcCCEEECCCCC
Confidence            11  1466666666653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.61  E-value=1.2e-07  Score=86.22  Aligned_cols=143  Identities=17%  Similarity=0.179  Sum_probs=102.7

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++|+++...    -..++. +..+++|+.|+++++.+... +....+++|++|+|+++.+++..-   ...+|+|+.
T Consensus       243 ~~L~~L~l~~n~----l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~  313 (466)
T 1o6v_A          243 TNLTDLDLANNQ----ISNLAP-LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP---ISNLKNLTY  313 (466)
T ss_dssp             TTCSEEECCSSC----CCCCGG-GTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSE
T ss_pred             CCCCEEECCCCc----cccchh-hhcCCCCCEEECCCCccCcc-ccccCCCccCeEEcCCCcccCchh---hcCCCCCCE
Confidence            567777776211    112222 66889999999999988553 336679999999999998543221   568999999


Q ss_pred             EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecccCC
Q 042585          175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTCESN  249 (286)
Q Consensus       175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~~~  249 (286)
                      |++++|...  ..+..+++|+.|++.++.+++-   .....+++|+.|++++|.......+. .++|+.|++++|...
T Consensus       314 L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          314 LTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             EECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEE
T ss_pred             EECcCCcCCCchhhccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCccc
Confidence            999988543  2233499999999999877653   34568999999999998643333332 489999999988543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.60  E-value=4.1e-08  Score=94.94  Aligned_cols=149  Identities=20%  Similarity=0.231  Sum_probs=80.5

Q ss_pred             CCceEEEEEeccCCCcccCCCc--chhccCCccEEEEeceeeccCCcC--cccCCCccEEEcceeeeChHHHHH--HHhc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQ--MVLRSKSIKVLTLQNYKLESLGND--DVKLLSLRKLHLSDVYADDQVMNN--LFAQ  168 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~--l~~~  168 (286)
                      .++++|+++...   ....+|.  .+..+++|++|+|++|.+....+.  ...+++|++|+|+++.++......  ....
T Consensus       100 ~~L~~L~Ls~n~---l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  176 (768)
T 3rgz_A          100 ASLTSLDLSRNS---LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG  176 (768)
T ss_dssp             TTCCEEECCSSE---EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred             CCCCEEECCCCc---CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence            467777777211   1123444  677888889998888877331122  246888888888888743322211  2455


Q ss_pred             CCCcceEEeeeccccc-------------------------eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecc
Q 042585          169 SPLLQHLEFVRYNNLV-------------------------NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHIS  223 (286)
Q Consensus       169 cp~Le~L~l~~c~~~~-------------------------~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~  223 (286)
                      |++|++|+++++....                         .+..+++|++|++.++.++... ......+++|++|+++
T Consensus       177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNIS  255 (768)
T ss_dssp             CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECC
T ss_pred             CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECC
Confidence            6666666665543211                         1112455555555555444321 1333456666666666


Q ss_pred             cccCccccc-cccccccEEEeeccc
Q 042585          224 LCNNIESIT-ISSLRLKKLIINTCE  247 (286)
Q Consensus       224 ~c~~~~~~~-i~~p~L~~L~ls~c~  247 (286)
                      +|.....+. ...++|+.|++++|.
T Consensus       256 ~n~l~~~~~~~~l~~L~~L~L~~n~  280 (768)
T 3rgz_A          256 SNQFVGPIPPLPLKSLQYLSLAENK  280 (768)
T ss_dssp             SSCCEESCCCCCCTTCCEEECCSSE
T ss_pred             CCcccCccCccccCCCCEEECcCCc
Confidence            654322211 123567777776664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.59  E-value=4.9e-08  Score=82.83  Aligned_cols=149  Identities=19%  Similarity=0.082  Sum_probs=85.7

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEecee-eccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYK-LESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|+++...   -....|..+..+++|++|+++++. +... ......+++|++|+|.++.++... ...+..+++|
T Consensus        56 ~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L  131 (285)
T 1ozn_A           56 RNLTILWLHSNV---LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAAL  131 (285)
T ss_dssp             TTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTC
T ss_pred             CCCCEEECCCCc---cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC-HhHhhCCcCC
Confidence            567777776211   111223455567788888888775 5332 223445778888888877643211 1224567788


Q ss_pred             ceEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccc--ccc-ccccccEEEeec
Q 042585          173 QHLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIES--ITI-SSLRLKKLIINT  245 (286)
Q Consensus       173 e~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~--~~i-~~p~L~~L~ls~  245 (286)
                      +.|+++++....    .+..+++|+.|++.++.++.-.. .....+++|++|+++++.-...  ..+ ..++|+.|++++
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence            888887664321    12337788888887765543110 2234677888888877642211  111 236788888877


Q ss_pred             ccC
Q 042585          246 CES  248 (286)
Q Consensus       246 c~~  248 (286)
                      +..
T Consensus       211 n~l  213 (285)
T 1ozn_A          211 NNL  213 (285)
T ss_dssp             SCC
T ss_pred             CcC
Confidence            643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.59  E-value=7.3e-08  Score=83.03  Aligned_cols=150  Identities=17%  Similarity=0.178  Sum_probs=100.6

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhcc-----CCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeC-hHHHHHHH
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRS-----KSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYAD-DQVMNNLF  166 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~-----~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~-~~~l~~l~  166 (286)
                      ..++++|+++...    -...|..+...     ++|++|+|+++.+.... .....+++|++|+|+++.+. ...+..-.
T Consensus       120 l~~L~~L~Ls~N~----l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          120 GPDLNILNLRNVS----WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCCSEEEEESCB----CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             CCCccEEEccCCC----CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            3689999999222    11225555555     89999999999885532 34557999999999999843 33332222


Q ss_pred             --hcCCCcceEEeeecccc--ceee-----cccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cc
Q 042585          167 --AQSPLLQHLEFVRYNNL--VNVS-----SCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SL  236 (286)
Q Consensus       167 --~~cp~Le~L~l~~c~~~--~~~~-----~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p  236 (286)
                        ..+++|++|+++++...  ..+.     .+++|+.|+++++.+++.........+++|++|+++++.- +.+.-. .+
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~~  274 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLPA  274 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCSSCCS
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-ChhhhhccC
Confidence              67899999999987543  1111     2589999999988776521002234568999999999742 233211 17


Q ss_pred             cccEEEeecccC
Q 042585          237 RLKKLIINTCES  248 (286)
Q Consensus       237 ~L~~L~ls~c~~  248 (286)
                      +|+.|+++++.-
T Consensus       275 ~L~~L~Ls~N~l  286 (312)
T 1wwl_A          275 KLSVLDLSYNRL  286 (312)
T ss_dssp             EEEEEECCSSCC
T ss_pred             CceEEECCCCCC
Confidence            899999998854

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.59  E-value=7.3e-08  Score=81.20  Aligned_cols=147  Identities=18%  Similarity=0.154  Sum_probs=101.4

Q ss_pred             CCceEEEEEeccCCCcccCCCcch-hccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMV-LRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|++....    -..+|..+ ..+++|++|+++++.+....+ ....+++|++|+|+++.++...- ..+..+++|
T Consensus        61 ~~L~~L~l~~n~----l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L  135 (270)
T 2o6q_A           61 TKLRLLYLNDNK----LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP-RVFDSLTKL  135 (270)
T ss_dssp             TTCCEEECCSSC----CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             CCCCEEECCCCc----cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH-HHhCcCcCC
Confidence            588999998221    12455544 568999999999988855323 34569999999999988433211 224678999


Q ss_pred             ceEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEee
Q 042585          173 QHLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIIN  244 (286)
Q Consensus       173 e~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls  244 (286)
                      +.|+++++....    .+..+++|+.|++.++.++.-.. .....+++|++|+++++. ++.+.   + ..++|+.|+++
T Consensus       136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred             CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEec
Confidence            999999875331    13348999999999886654211 224578999999999973 33332   2 24789999998


Q ss_pred             cccC
Q 042585          245 TCES  248 (286)
Q Consensus       245 ~c~~  248 (286)
                      +++.
T Consensus       214 ~N~~  217 (270)
T 2o6q_A          214 ENPW  217 (270)
T ss_dssp             SSCB
T ss_pred             CCCe
Confidence            7653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.58  E-value=8e-09  Score=96.06  Aligned_cols=133  Identities=18%  Similarity=0.192  Sum_probs=80.5

Q ss_pred             cchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccC
Q 042585          116 QMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKN  191 (286)
Q Consensus       116 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~  191 (286)
                      ..+..+++|++|++++|.+....+....+++|++|++.++.++.......+..+++|+.|++++|....    .+..+++
T Consensus       367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  446 (570)
T 2z63_A          367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS  446 (570)
T ss_dssp             HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence            345566777777777766533222345677888888877763322111234567888888888765332    1223788


Q ss_pred             CceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc--cc-ccccccEEEeecccC
Q 042585          192 LKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI--TI-SSLRLKKLIINTCES  248 (286)
Q Consensus       192 L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~--~i-~~p~L~~L~ls~c~~  248 (286)
                      |+.|++.++.+++..+......+++|++|++++|.-....  .+ ..++|+.|++++|..
T Consensus       447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence            8888888776653222133456788888888887432211  11 247888888888743

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.58  E-value=6.4e-08  Score=80.65  Aligned_cols=149  Identities=15%  Similarity=0.067  Sum_probs=93.5

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .+++.|++....   .....+..+..+++|++|+|+++.+....+. ...+++|++|+|+++.++... ...+..+++|+
T Consensus        35 ~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  110 (251)
T 3m19_A           35 ADTEKLDLQSTG---LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLD  110 (251)
T ss_dssp             TTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCC
T ss_pred             CCCCEEEccCCC---cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCC
Confidence            467788877211   1112233456778899999988887543232 456888999999888744221 12245688899


Q ss_pred             eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCc--ccccc-ccccccEEEeecc
Q 042585          174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNI--ESITI-SSLRLKKLIINTC  246 (286)
Q Consensus       174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~--~~~~i-~~p~L~~L~ls~c  246 (286)
                      .|+++++....    .+..+++|+.|+++++.++.-.. .....+++|++|+++++.--  ....+ ..++|+.|+++++
T Consensus       111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            99998764321    12337889999998876553210 23456788999999886422  11112 2478888888876


Q ss_pred             cC
Q 042585          247 ES  248 (286)
Q Consensus       247 ~~  248 (286)
                      ..
T Consensus       190 ~~  191 (251)
T 3m19_A          190 QF  191 (251)
T ss_dssp             CB
T ss_pred             ce
Confidence            54

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.58  E-value=8.8e-08  Score=80.58  Aligned_cols=142  Identities=15%  Similarity=0.116  Sum_probs=99.4

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      ..++++|++....    -..++ .+..+++|+.|+++++.+....+ ...+++|++|+|+++.+++  +..+ .. ++|+
T Consensus        40 l~~L~~L~l~~n~----i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~  109 (263)
T 1xeu_A           40 LSGVQNFNGDNSN----IQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN--LNGI-PS-ACLS  109 (263)
T ss_dssp             HTTCSEEECTTSC----CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC--CTTC-CC-SSCC
T ss_pred             cCcCcEEECcCCC----cccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC--cCcc-cc-Cccc
Confidence            3678888887211    12344 56778999999999998855433 6679999999999998543  1121 22 8999


Q ss_pred             eEEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccccc-ccccccEEEeecccC
Q 042585          174 HLEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITI-SSLRLKKLIINTCES  248 (286)
Q Consensus       174 ~L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i-~~p~L~~L~ls~c~~  248 (286)
                      .|+++++...  ..+..+++|+.|+++++.+++-   .....+++|++|+++++.--..-.+ ..++|+.|+++++..
T Consensus       110 ~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          110 RLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             EEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEE
T ss_pred             EEEccCCccCCChhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcc
Confidence            9999987433  2333489999999998877653   2356789999999999743222122 247899999988753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.58  E-value=7.4e-08  Score=87.00  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=53.5

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .++++|+++...   -....+..+..+++|++|+|+++.+....+ ....+++|++|+|+++.++.-. ...+..+++|+
T Consensus        88 ~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~  163 (440)
T 3zyj_A           88 RHLEILQLSRNH---IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLR  163 (440)
T ss_dssp             SSCCEEECCSSC---CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCC
T ss_pred             CCCCEEECCCCc---CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCcccC
Confidence            467777776211   011112344566777777777776644222 2445777777777776633211 11234566666


Q ss_pred             eEEeeecccccee-----ecccCCceEEecCccc
Q 042585          174 HLEFVRYNNLVNV-----SSCKNLKHLDLCDGSY  202 (286)
Q Consensus       174 ~L~l~~c~~~~~~-----~~~~~L~~L~l~~~~~  202 (286)
                      .|++.+|.....+     ..+++|+.|+++++.+
T Consensus       164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             EeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence            6666654433221     1145555555554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.57  E-value=7.8e-08  Score=87.13  Aligned_cols=84  Identities=18%  Similarity=0.141  Sum_probs=45.2

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .++++|+++...   -....+..+..+++|++|+|+++.+....+. ...+++|++|+|+++.++.-. ...+..+|+|+
T Consensus        99 ~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~  174 (452)
T 3zyi_A           99 HHLEVLQLGRNS---IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLM  174 (452)
T ss_dssp             TTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCC
T ss_pred             CCCCEEECCCCc---cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCccc
Confidence            467777776211   1111223445667777777777766443222 345777777777777633211 11234466666


Q ss_pred             eEEeeeccc
Q 042585          174 HLEFVRYNN  182 (286)
Q Consensus       174 ~L~l~~c~~  182 (286)
                      .|++++|..
T Consensus       175 ~L~l~~~~~  183 (452)
T 3zyi_A          175 RLDLGELKK  183 (452)
T ss_dssp             EEECCCCTT
T ss_pred             EEeCCCCCC
Confidence            666665443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.57  E-value=8.7e-08  Score=82.63  Aligned_cols=106  Identities=18%  Similarity=0.201  Sum_probs=50.4

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEec-eeec-cCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQN-YKLE-SLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      ..+++|++.... -.....+|..+..+++|++|++++ +.+. ..+.....+++|++|+|+++.++.. +...+..+++|
T Consensus        50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTC
T ss_pred             ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCC
Confidence            356666666111 001114555666666666666663 3332 2222334566666666666653211 01113445666


Q ss_pred             ceEEeeecccc----ceeecccCCceEEecCccc
Q 042585          173 QHLEFVRYNNL----VNVSSCKNLKHLDLCDGSY  202 (286)
Q Consensus       173 e~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~  202 (286)
                      +.|+++++...    ..+..+++|++|++.++.+
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  161 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence            66666554322    1122255566666655543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.56  E-value=7.6e-08  Score=82.78  Aligned_cols=154  Identities=16%  Similarity=0.121  Sum_probs=92.4

Q ss_pred             CCceEEEEEeccCCCcccCCC-cchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceee-eChHHHHH--HHhcC
Q 042585           95 RNVEELEVEHLRRLDTWNSLP-QMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVY-ADDQVMNN--LFAQS  169 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~-~~~~~l~~--l~~~c  169 (286)
                      .++++|+++...-......++ ..+..+++|++|+|+++.+.... .....+++|++|+|+++. .++..+..  ....+
T Consensus       117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  196 (310)
T 4glp_A          117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF  196 (310)
T ss_dssp             BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred             CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence            578888888221000000011 22346788999999988874432 234468899999999887 44333322  12468


Q ss_pred             CCcceEEeeecccc--ce-----eecccCCceEEecCcccChhhHHHHH--hcCCCccEEecccccCccccccc-ccccc
Q 042585          170 PLLQHLEFVRYNNL--VN-----VSSCKNLKHLDLCDGSYTDEWLNSQI--SGLPLLEQLHISLCNNIESITIS-SLRLK  239 (286)
Q Consensus       170 p~Le~L~l~~c~~~--~~-----~~~~~~L~~L~l~~~~~~~~~l~~~~--~~~p~L~~L~l~~c~~~~~~~i~-~p~L~  239 (286)
                      |+|++|++++|...  ..     +..+++|++|+++++.+++.....+.  ...++|++|+++++.-- .+.-. .++|+
T Consensus       197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~  275 (310)
T 4glp_A          197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLR  275 (310)
T ss_dssp             CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCS
T ss_pred             CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCC
Confidence            88999999877542  11     12268899999988776542100111  12378999999886422 22111 26888


Q ss_pred             EEEeecccCC
Q 042585          240 KLIINTCESN  249 (286)
Q Consensus       240 ~L~ls~c~~~  249 (286)
                      .|+++++.--
T Consensus       276 ~L~Ls~N~l~  285 (310)
T 4glp_A          276 VLDLSSNRLN  285 (310)
T ss_dssp             CEECCSCCCC
T ss_pred             EEECCCCcCC
Confidence            9998887543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.56  E-value=1.1e-07  Score=80.74  Aligned_cols=150  Identities=19%  Similarity=0.113  Sum_probs=102.9

Q ss_pred             CCceEEEEEeccCCCcccCC-CcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSL-PQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|+++...   .-..+ |..+..+++|++|+++++.+....+ ....+++|++|+|+++.++.... ..+..+++|
T Consensus        80 ~~L~~L~l~~n~---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L  155 (285)
T 1ozn_A           80 ALLEQLDLSDNA---QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNL  155 (285)
T ss_dssp             TTCCEEECCSCT---TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             cCCCEEeCCCCC---CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-hHhccCCCc
Confidence            678999998221   01223 4556678999999999988855322 34569999999999988443211 224568999


Q ss_pred             ceEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEee
Q 042585          173 QHLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIIN  244 (286)
Q Consensus       173 e~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls  244 (286)
                      +.|+++++....    .+..+++|+.|++.++.++.... .....+++|++|+++++.- +.+.   + ..++|+.|+++
T Consensus       156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC-SCCCHHHHTTCTTCCEEECC
T ss_pred             cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcC-CcCCHHHcccCcccCEEecc
Confidence            999999874331    13338999999999887664311 3345789999999999743 2222   2 25899999999


Q ss_pred             cccCCc
Q 042585          245 TCESNT  250 (286)
Q Consensus       245 ~c~~~~  250 (286)
                      +++...
T Consensus       234 ~N~~~c  239 (285)
T 1ozn_A          234 DNPWVC  239 (285)
T ss_dssp             SSCEEC
T ss_pred             CCCccC
Confidence            875543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.55  E-value=8.6e-08  Score=82.67  Aligned_cols=104  Identities=10%  Similarity=0.071  Sum_probs=58.7

Q ss_pred             CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeec-cCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLE-SLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|+++ +..   ....+|..+..+++|++|+|+++.+. ........+++|++|+|+++.++.. +...+..+|+|
T Consensus        76 ~~L~~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L  151 (313)
T 1ogq_A           76 PYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNL  151 (313)
T ss_dssp             TTCSEEEEEEETT---EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTC
T ss_pred             CCCCeeeCCCCCc---ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCC
Confidence            577777776 222   23355666777777888887777663 2223345577777777777763321 11123456777


Q ss_pred             ceEEeeeccccce----eeccc-CCceEEecCccc
Q 042585          173 QHLEFVRYNNLVN----VSSCK-NLKHLDLCDGSY  202 (286)
Q Consensus       173 e~L~l~~c~~~~~----~~~~~-~L~~L~l~~~~~  202 (286)
                      ++|+++++.....    +..++ +|+.|+++++.+
T Consensus       152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            7777766543211    11233 566666655443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.55  E-value=5.6e-08  Score=76.54  Aligned_cols=123  Identities=15%  Similarity=0.074  Sum_probs=59.9

Q ss_pred             ccCCccEEEEeceeeccCCcCccc-CCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc---e-eecccCCce
Q 042585          120 RSKSIKVLTLQNYKLESLGNDDVK-LLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV---N-VSSCKNLKH  194 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~---~-~~~~~~L~~  194 (286)
                      .+.+|+.|+++++.+... +.... +|+|+.|+|+++.+++-   .-+..+++|+.|+++++....   . +..+++|+.
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            455666666666655432 22222 33666666666664331   123456666666666553221   1 122566666


Q ss_pred             EEecCcccChhhHHHHHhcCCCccEEecccccCcc--cc----ccccccccEEEeecc
Q 042585          195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIE--SI----TISSLRLKKLIINTC  246 (286)
Q Consensus       195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~--~~----~i~~p~L~~L~ls~c  246 (286)
                      |+++++.+++-.-......+|+|++|+++++.-..  ..    .-..|+|+.|+++++
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            66666554431100123456666666666653211  10    112356666666655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.54  E-value=5.5e-07  Score=82.81  Aligned_cols=146  Identities=19%  Similarity=0.205  Sum_probs=96.6

Q ss_pred             hccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeCh-HHHHHHHhcCCCcceEEeeeccccc-----eeecccC
Q 042585          119 LRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADD-QVMNNLFAQSPLLQHLEFVRYNNLV-----NVSSCKN  191 (286)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~~-----~~~~~~~  191 (286)
                      ..+++|++|+++++.+.. .......+++|++|+|+++.++. ..+...+..+++|+.|+++++....     .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            356788888888887744 22344568899999999988654 2344556789999999999775432     1333789


Q ss_pred             CceEEecCcccChhhHHHHHhcC-CCccEEecccccCccccc---cccccccEEEeecccCCcccc---cccc-ceeeec
Q 042585          192 LKHLDLCDGSYTDEWLNSQISGL-PLLEQLHISLCNNIESIT---ISSLRLKKLIINTCESNTIFS---FGSI-ALFSLA  263 (286)
Q Consensus       192 L~~L~l~~~~~~~~~l~~~~~~~-p~L~~L~l~~c~~~~~~~---i~~p~L~~L~ls~c~~~~~~~---~~~~-~l~s~~  263 (286)
                      |+.|+++++.++...    .... ++|++|++++|.- +.+.   ...++|+.|+++++.. +.+.   +..+ .+..+.
T Consensus       401 L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          401 LLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             CCEEECCSSCCCGGG----GGSCCTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred             CCEEECcCCCCCcch----hhhhcccCCEEECCCCcc-cccchhhhcCCCCCEEECCCCcC-CccCHHHhccCCcccEEE
Confidence            999999988776532    2233 7999999999742 2221   2458999999998853 3333   2222 244555


Q ss_pred             cC-CCCCc
Q 042585          264 LR-KPLGL  270 (286)
Q Consensus       264 ~~-~~~~~  270 (286)
                      +. .|+..
T Consensus       475 l~~N~~~c  482 (520)
T 2z7x_B          475 LHTNPWDC  482 (520)
T ss_dssp             CCSSCBCC
T ss_pred             CcCCCCcc
Confidence            54 46643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.54  E-value=2.8e-08  Score=93.18  Aligned_cols=127  Identities=17%  Similarity=0.119  Sum_probs=61.0

Q ss_pred             hccCCccEEEEeceeeccCCc--CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc-----eeecccC
Q 042585          119 LRSKSIKVLTLQNYKLESLGN--DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV-----NVSSCKN  191 (286)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~-----~~~~~~~  191 (286)
                      ..+++|+.|+++++.+....+  ....+++|++|+++++.++... ...+..+++|+.|++++|....     .+..+++
T Consensus       396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc-hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence            344444444444444422111  2233455555555554421110 1113445666666665553221     1222667


Q ss_pred             CceEEecCcccChhhHHHHHhcCCCccEEecccccCccc--cccc-cccccEEEeeccc
Q 042585          192 LKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIES--ITIS-SLRLKKLIINTCE  247 (286)
Q Consensus       192 L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~--~~i~-~p~L~~L~ls~c~  247 (286)
                      |+.|+++++.++.... .....+++|++|++++|.-...  ..+. .++|+.|++++|.
T Consensus       475 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             CCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             CCEEECCCCcCCccCh-hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence            7777777665543211 2234667777777777632221  1122 3678888888775

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.53  E-value=2.3e-07  Score=84.35  Aligned_cols=138  Identities=14%  Similarity=0.098  Sum_probs=96.1

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      -..+++|+++...    -..+| .+..+++|++|+++++.+...  ....+++|++|+|+++.++.-.    +..+++|+
T Consensus        41 l~~L~~L~Ls~n~----l~~~~-~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~  109 (457)
T 3bz5_A           41 LATLTSLDCHNSS----ITDMT-GIEKLTGLTKLICTSNNITTL--DLSQNTNLTYLACDSNKLTNLD----VTPLTKLT  109 (457)
T ss_dssp             HTTCCEEECCSSC----CCCCT-TGGGCTTCSEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC----CTTCTTCC
T ss_pred             cCCCCEEEccCCC----cccCh-hhcccCCCCEEEccCCcCCeE--ccccCCCCCEEECcCCCCceee----cCCCCcCC
Confidence            3688999998221    11234 567889999999999988653  3567899999999999855432    56789999


Q ss_pred             eEEeeecccc-ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecc
Q 042585          174 HLEFVRYNNL-VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTC  246 (286)
Q Consensus       174 ~L~l~~c~~~-~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c  246 (286)
                      .|+++++... ..+..+++|++|++.++.++.-.    ...+++|++|++++|..++.+.+. .++|+.|+++++
T Consensus       110 ~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          110 YLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             EEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCeecCCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence            9999877432 22333889999999887766421    356788888888887655554433 356666666655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.53  E-value=2.2e-07  Score=76.70  Aligned_cols=123  Identities=11%  Similarity=0.067  Sum_probs=53.1

Q ss_pred             hccCCccEEEEec-eeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc---eEEeeeccccce-----eec
Q 042585          119 LRSKSIKVLTLQN-YKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ---HLEFVRYNNLVN-----VSS  188 (286)
Q Consensus       119 ~~~~~L~~L~L~~-~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le---~L~l~~c~~~~~-----~~~  188 (286)
                      ..+++|++|++++ +.+.... .....+++|++|+|.++.++.  +.. +..+++|+   .|+++++.....     +..
T Consensus        77 ~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~  153 (239)
T 2xwt_C           77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG  153 (239)
T ss_dssp             ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred             CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence            3455555555554 3332211 122345555555555555222  111 33455555   555554412211     222


Q ss_pred             ccCCc-eEEecCcccChhhHHHHHhcCCCccEEecccccCcccccc----cc-ccccEEEeecc
Q 042585          189 CKNLK-HLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITI----SS-LRLKKLIINTC  246 (286)
Q Consensus       189 ~~~L~-~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i----~~-p~L~~L~ls~c  246 (286)
                      +++|+ .|++.++.++.-.  ......++|++|+++++..++.+..    .. ++|+.|+++++
T Consensus       154 l~~L~~~L~l~~n~l~~i~--~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          154 LCNETLTLKLYNNGFTSVQ--GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             TBSSEEEEECCSCCCCEEC--TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred             hhcceeEEEcCCCCCcccC--HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence            55555 6666554433100  0111225566666665543333221    12 45666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.52  E-value=1.2e-07  Score=91.71  Aligned_cols=135  Identities=21%  Similarity=0.157  Sum_probs=80.4

Q ss_pred             CCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceee
Q 042585          113 SLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVS  187 (286)
Q Consensus       113 ~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~  187 (286)
                      .+|..+..+++|+.|++++|.+.. .+.....+++|+.|+|+++.+.... ...+..+++|+.|++++|...    ..+.
T Consensus       409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  487 (768)
T 3rgz_A          409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIPSGLS  487 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC-CHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence            345556667777777777776632 2233445777777777777633211 112345777777777766433    1233


Q ss_pred             cccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---cccccccEEEeecccCC
Q 042585          188 SCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---ISSLRLKKLIINTCESN  249 (286)
Q Consensus       188 ~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i~~p~L~~L~ls~c~~~  249 (286)
                      .+++|+.|++.++.++.... .....+++|++|++++|.....+.   -..++|+.|++++|...
T Consensus       488 ~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          488 NCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             cCCCCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            37788888887776553211 223567788888888875432221   12477888888877544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.52  E-value=3.1e-08  Score=86.77  Aligned_cols=12  Identities=8%  Similarity=0.127  Sum_probs=6.8

Q ss_pred             ccccEEEeeccc
Q 042585          236 LRLKKLIINTCE  247 (286)
Q Consensus       236 p~L~~L~ls~c~  247 (286)
                      ++|+.|+++++.
T Consensus       222 ~~L~~L~L~~n~  233 (353)
T 2z80_A          222 SSVECLELRDTD  233 (353)
T ss_dssp             TTEEEEEEESCB
T ss_pred             ccccEEECCCCc
Confidence            456666665553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.52  E-value=3.3e-08  Score=79.90  Aligned_cols=123  Identities=21%  Similarity=0.108  Sum_probs=62.4

Q ss_pred             hhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCC
Q 042585          118 VLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNL  192 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L  192 (286)
                      +..+++|++|+++++.+....+. ...+++|++|+|+++.++.-. ...+..+++|+.|+++++....    .+..+++|
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  126 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL  126 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence            34566777777776666432222 234667777777666633111 1123456667777776553221    12225667


Q ss_pred             ceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccccccccEEEeecc
Q 042585          193 KHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINTC  246 (286)
Q Consensus       193 ~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~~p~L~~L~ls~c  246 (286)
                      ++|++.++.++.-. ......+++|++|++.++....    ..|.|+.|+++.+
T Consensus       127 ~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~----~~~~l~~L~~~~n  175 (208)
T 2o6s_A          127 KDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWDC----TCPGIRYLSEWIN  175 (208)
T ss_dssp             CEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBCC----CTTTTHHHHHHHH
T ss_pred             CEEECCCCccceeC-HHHhccCCCccEEEecCCCeec----CCCCHHHHHHHHH
Confidence            77777665544211 0223456667777766653221    1245555554444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.50  E-value=1.2e-07  Score=86.90  Aligned_cols=149  Identities=15%  Similarity=0.131  Sum_probs=81.8

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHH----H-------
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVM----N-------  163 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l----~-------  163 (286)
                      +++++|+++...   .....|..+..+++|++|+|++|.+... +....+++|++|+|+++.++.-..    +       
T Consensus        34 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N  109 (487)
T 3oja_A           34 WNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN  109 (487)
T ss_dssp             GGCCEEECCSSC---CCCCCGGGGTTCTTCCEEECTTSCCEEE-EECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred             CCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEeeCCCCCCC-cccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence            378899998222   1122345667889999999999877432 225668888888888887432110    0       


Q ss_pred             ---H-HHhcCCCcceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc-cc
Q 042585          164 ---N-LFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT-IS  234 (286)
Q Consensus       164 ---~-l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~-i~  234 (286)
                         . ....+|+|+.|+++++...    ..+..+++|+.|+++++.++......+...+++|++|++++|.--.... ..
T Consensus       110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~  189 (487)
T 3oja_A          110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV  189 (487)
T ss_dssp             CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred             cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc
Confidence               0 0012344444444443221    1122256666666666655442222333356777777777754221111 12


Q ss_pred             cccccEEEeeccc
Q 042585          235 SLRLKKLIINTCE  247 (286)
Q Consensus       235 ~p~L~~L~ls~c~  247 (286)
                      .++|+.|+++++.
T Consensus       190 l~~L~~L~Ls~N~  202 (487)
T 3oja_A          190 FAKLKTLDLSSNK  202 (487)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCC
Confidence            4678888877764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.49  E-value=1.3e-07  Score=83.10  Aligned_cols=125  Identities=18%  Similarity=0.111  Sum_probs=67.9

Q ss_pred             CCccEEEEeceeeccCCcC-----ccc-CCCccEEEcceeeeChHHHHHH---HhcCC-CcceEEeeeccccce----ee
Q 042585          122 KSIKVLTLQNYKLESLGND-----DVK-LLSLRKLHLSDVYADDQVMNNL---FAQSP-LLQHLEFVRYNNLVN----VS  187 (286)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~~-----~~~-~~~L~~L~L~~~~~~~~~l~~l---~~~cp-~Le~L~l~~c~~~~~----~~  187 (286)
                      ++|++|+|++|.+......     ... .++|++|+|+++.+++.+...+   +..+| +|++|++++|.....    +.
T Consensus       109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  188 (362)
T 3goz_A          109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA  188 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence            5677777777666331110     111 2467777777776554333332   33444 777777776643211    11


Q ss_pred             ----cc-cCCceEEecCcccChhhHHHH----HhcCCCccEEecccccCcccccc--------ccccccEEEeeccc
Q 042585          188 ----SC-KNLKHLDLCDGSYTDEWLNSQ----ISGLPLLEQLHISLCNNIESITI--------SSLRLKKLIINTCE  247 (286)
Q Consensus       188 ----~~-~~L~~L~l~~~~~~~~~l~~~----~~~~p~L~~L~l~~c~~~~~~~i--------~~p~L~~L~ls~c~  247 (286)
                          .+ ++|++|+++++.+++.+...+    ...+++|++|++++|. +++.+.        ..++|+.|++++|.
T Consensus       189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence                13 477777777776665433222    2224577788777763 222221        13678888888775

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.49  E-value=8e-08  Score=87.09  Aligned_cols=127  Identities=18%  Similarity=0.143  Sum_probs=76.6

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .+++.|+++...   -....+..+..+++|+.|+|+++.+.... ....++++|++|+|+++.++.-. ...+..+++|+
T Consensus        75 ~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  150 (452)
T 3zyi_A           75 SNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLR  150 (452)
T ss_dssp             TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCC
T ss_pred             CCccEEECcCCc---CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCC
Confidence            477888887221   11222445667899999999998774422 23456899999999988744211 12245689999


Q ss_pred             eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      .|+++++....    .+..+++|+.|++.++......-......+++|++|++++|
T Consensus       151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            99998765331    12236777777777542111100022345666666666664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.49  E-value=3.9e-08  Score=78.99  Aligned_cols=112  Identities=20%  Similarity=0.171  Sum_probs=83.4

Q ss_pred             cCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecc
Q 042585          112 NSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSC  189 (286)
Q Consensus       112 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~  189 (286)
                      ..+|..+..+++|++|+++++.+... +....+++|++|+|+++.++.  +......+|+|+.|+++++...  ..+..+
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~n~l~~l-~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l  114 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLSGIEKL  114 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSEEEESCC-CCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred             hhhhHHHhcCCCCCEEECCCCCCccc-cccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence            34555778899999999999988554 455668999999999998552  3344556789999999987432  223338


Q ss_pred             cCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          190 KNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       190 ~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      ++|+.|++.++.+++-........+++|++|+++++.
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            9999999998887752211346789999999999974

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.49  E-value=8.9e-08  Score=89.77  Aligned_cols=134  Identities=17%  Similarity=0.153  Sum_probs=97.3

Q ss_pred             cchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeeccc
Q 042585          116 QMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCK  190 (286)
Q Consensus       116 ~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~  190 (286)
                      ..+..+++|+.|++++|.+.. .......+++|++|+|.++.+++..+...+..+++|+.|++++|....    .+..++
T Consensus       418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  497 (606)
T 3vq2_A          418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH  497 (606)
T ss_dssp             TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence            356678999999999988844 223455799999999999996654344446779999999999885432    233389


Q ss_pred             CCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc--cc-cc-cccEEEeecccCCcc
Q 042585          191 NLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT--IS-SL-RLKKLIINTCESNTI  251 (286)
Q Consensus       191 ~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~--i~-~p-~L~~L~ls~c~~~~~  251 (286)
                      +|++|+++++.++.... .....+++|++|++++|. ++.+.  +. .| +|+.|++++++....
T Consensus       498 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          498 RLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             TCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             cCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcccC
Confidence            99999999987765311 334678999999999985 33332  22 34 699999998765543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.48  E-value=6.5e-08  Score=87.44  Aligned_cols=127  Identities=15%  Similarity=0.046  Sum_probs=66.8

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeec-cC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLE-SL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|+++...   -....|..+..+++|++|+++++.+. .. .....++++|++|+|+++.++...- ..+..+++|
T Consensus        30 ~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L  105 (455)
T 3v47_A           30 AHVNYVDLSLNS---IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANL  105 (455)
T ss_dssp             TTCCEEECCSSC---CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTC
T ss_pred             CccCEEEecCCc---cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccC
Confidence            466777776211   11122444556677777777776542 11 1224456777777777665322111 113456677


Q ss_pred             ceEEeeeccccc----e--eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          173 QHLEFVRYNNLV----N--VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       173 e~L~l~~c~~~~----~--~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      +.|++++|....    .  +..+++|++|+++++.++......+...+++|++|+++++
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            777776654321    1  2236677777776665443211122456667777776665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.48  E-value=1e-07  Score=83.78  Aligned_cols=152  Identities=14%  Similarity=0.097  Sum_probs=98.6

Q ss_pred             CCceEEEEE-eccCCCcccCCCcchhccC-CccEEEEeceeeccC-CcCccc-----CCCccEEEcceeeeChH---HHH
Q 042585           95 RNVEELEVE-HLRRLDTWNSLPQMVLRSK-SIKVLTLQNYKLESL-GNDDVK-----LLSLRKLHLSDVYADDQ---VMN  163 (286)
Q Consensus        95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~-~~~~~~-----~~~L~~L~L~~~~~~~~---~l~  163 (286)
                      .++++|+++ +.-.......+...+..++ +|++|+|++|.+... ......     +++|++|+|+++.+++.   .+.
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            469999998 2210011111113445667 899999999988431 111222     39999999999996543   344


Q ss_pred             HHHhcC-CCcceEEeeeccccce----eec-----ccCCceEEecCcccChhhHHHH---HhcCC-CccEEecccccCcc
Q 042585          164 NLFAQS-PLLQHLEFVRYNNLVN----VSS-----CKNLKHLDLCDGSYTDEWLNSQ---ISGLP-LLEQLHISLCNNIE  229 (286)
Q Consensus       164 ~l~~~c-p~Le~L~l~~c~~~~~----~~~-----~~~L~~L~l~~~~~~~~~l~~~---~~~~p-~L~~L~l~~c~~~~  229 (286)
                      ..+..+ ++|+.|++++|.....    +..     +++|++|+++++.+++.+...+   ....+ +|++|++++|.- +
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~  180 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-A  180 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-G
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC-c
Confidence            445556 8999999998764311    111     3599999999998876544333   34455 999999999842 2


Q ss_pred             cccc--------cc-ccccEEEeeccc
Q 042585          230 SITI--------SS-LRLKKLIINTCE  247 (286)
Q Consensus       230 ~~~i--------~~-p~L~~L~ls~c~  247 (286)
                      ..+.        .. ++|+.|++++|.
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            2221        12 499999999986

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.48  E-value=3.5e-07  Score=76.90  Aligned_cols=126  Identities=21%  Similarity=0.156  Sum_probs=94.2

Q ss_pred             chhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCce
Q 042585          117 MVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKH  194 (286)
Q Consensus       117 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~  194 (286)
                      .+..+++|++|+++++.+... +....+++|++|+|+++.+++-.-   +..+++|+.|+++++...  ..+. .++|+.
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~-~~~L~~  110 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIP-SACLSR  110 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCC-CSSCCE
T ss_pred             chhhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCccc-cCcccE
Confidence            356789999999999988554 456679999999999998554321   678999999999987532  2222 389999


Q ss_pred             EEecCcccChhhHHHHHhcCCCccEEecccccCcccc-cc-ccccccEEEeecccCCcc
Q 042585          195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI-TI-SSLRLKKLIINTCESNTI  251 (286)
Q Consensus       195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~-~i-~~p~L~~L~ls~c~~~~~  251 (286)
                      |+++++.+++-   .....+++|+.|+++++.- +.+ .+ ..++|+.|+++++.--..
T Consensus       111 L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i-~~~~~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          111 LFLDNNELRDT---DSLIHLKNLEILSIRNNKL-KSIVMLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             EECCSSCCSBS---GGGTTCTTCCEEECTTSCC-CBCGGGGGCTTCCEEECTTSCCCBC
T ss_pred             EEccCCccCCC---hhhcCcccccEEECCCCcC-CCChHHccCCCCCEEECCCCcCcch
Confidence            99999887653   2356899999999999742 222 22 247999999998854433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.47  E-value=2.1e-07  Score=76.86  Aligned_cols=164  Identities=14%  Similarity=0.159  Sum_probs=105.9

Q ss_pred             hCCceEEEEEeccCCCcccCCCc-chhccCCccEEEEecee-eccCCc-CcccCCCccEEEcce-eeeChHHHHHHHhcC
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQ-MVLRSKSIKVLTLQNYK-LESLGN-DDVKLLSLRKLHLSD-VYADDQVMNNLFAQS  169 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-~~~~~~-~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~c  169 (286)
                      ..++++|++....    -..+|. .+..+++|++|+++++. +....+ ....+++|++|+|.+ +.++.-. ...+..+
T Consensus        30 ~~~l~~L~l~~n~----l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l  104 (239)
T 2xwt_C           30 PPSTQTLKLIETH----LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKEL  104 (239)
T ss_dssp             CTTCCEEEEESCC----CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECC
T ss_pred             CCcccEEEEeCCc----ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCC
Confidence            3478899998221    123333 45678999999999986 644323 455799999999998 4444211 1124579


Q ss_pred             CCcceEEeeecccc--ceeecccCCc---eEEecCc-ccChhhHHHHHhcCCCcc-EEecccccCccccc---ccccccc
Q 042585          170 PLLQHLEFVRYNNL--VNVSSCKNLK---HLDLCDG-SYTDEWLNSQISGLPLLE-QLHISLCNNIESIT---ISSLRLK  239 (286)
Q Consensus       170 p~Le~L~l~~c~~~--~~~~~~~~L~---~L~l~~~-~~~~~~l~~~~~~~p~L~-~L~l~~c~~~~~~~---i~~p~L~  239 (286)
                      ++|+.|++.++...  ..+..+++|+   .|++.++ .++.-. ......+++|+ +|+++++.- +.+.   ...++|+
T Consensus       105 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~~~L~  182 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLD  182 (239)
T ss_dssp             TTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSCCC-CEECTTTTTTCEEE
T ss_pred             CCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCCCC-cccCHhhcCCCCCC
Confidence            99999999987432  3344477777   9999987 554311 02245789999 999988642 2322   2236899


Q ss_pred             EEEeecccCCccc---ccccc--ceeeecc
Q 042585          240 KLIINTCESNTIF---SFGSI--ALFSLAL  264 (286)
Q Consensus       240 ~L~ls~c~~~~~~---~~~~~--~l~s~~~  264 (286)
                      .|+++++..++.+   .+..+  .+..+.+
T Consensus       183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             EEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred             EEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence            9999998645443   34443  3444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.46  E-value=9.4e-08  Score=86.29  Aligned_cols=127  Identities=17%  Similarity=0.164  Sum_probs=82.2

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .+++.|+++...   -....+..+..+++|++|+|+++.+.... ....++++|++|+|+++.++.-. ...+..+++|+
T Consensus        64 ~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  139 (440)
T 3zyj_A           64 TNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLK  139 (440)
T ss_dssp             TTCSEEECCSCC---CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCC
T ss_pred             CCCcEEEccCCc---CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCc
Confidence            567888887221   11122345668899999999998874422 23456899999999998844211 11245689999


Q ss_pred             eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      .|+++++....    .+..+++|+.|++.++.............+++|++|++++|
T Consensus       140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            99999765331    23338999999998753221100123456788888888876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.45  E-value=1e-07  Score=82.32  Aligned_cols=149  Identities=15%  Similarity=0.130  Sum_probs=78.8

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHH----HH-------
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQV----MN-------  163 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~----l~-------  163 (286)
                      .++++|+++...   -....|..+..+++|++|+|+++.+... +....+++|++|+|+++.++.-.    ++       
T Consensus        34 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n  109 (317)
T 3o53_A           34 WNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN  109 (317)
T ss_dssp             GGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECTTSCCEEE-EEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred             CCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECCCCcCCcc-hhhhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence            478888887211   1112234566778888888888776332 22556788888888877633210    00       


Q ss_pred             ----HHHhcCCCcceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc-ccc
Q 042585          164 ----NLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI-TIS  234 (286)
Q Consensus       164 ----~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~-~i~  234 (286)
                          .....+++|+.|+++++...    ..+..+++|+.|+++++.++......+...+++|++|++++|.--..- ...
T Consensus       110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  189 (317)
T 3o53_A          110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV  189 (317)
T ss_dssp             CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred             ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc
Confidence                00112344444444443221    112225667777776665554322233345677777777776421111 112


Q ss_pred             cccccEEEeeccc
Q 042585          235 SLRLKKLIINTCE  247 (286)
Q Consensus       235 ~p~L~~L~ls~c~  247 (286)
                      .++|+.|+++++.
T Consensus       190 l~~L~~L~Ls~N~  202 (317)
T 3o53_A          190 FAKLKTLDLSSNK  202 (317)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             cccCCEEECCCCc
Confidence            4678888887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.44  E-value=1.1e-07  Score=89.23  Aligned_cols=59  Identities=19%  Similarity=0.258  Sum_probs=25.0

Q ss_pred             ccCCceEEecCcccChhhH--HHHHhcCCCccEEecccccCcccc--cc-ccccccEEEeeccc
Q 042585          189 CKNLKHLDLCDGSYTDEWL--NSQISGLPLLEQLHISLCNNIESI--TI-SSLRLKKLIINTCE  247 (286)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~l--~~~~~~~p~L~~L~l~~c~~~~~~--~i-~~p~L~~L~ls~c~  247 (286)
                      +++|++|++.++.+++..+  ......+++|++|++++|.-....  .+ ..++|+.|+++++.
T Consensus       448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence            4555555555544332100  011234555555555554221110  11 12556666666553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.44  E-value=4.8e-07  Score=82.33  Aligned_cols=126  Identities=18%  Similarity=0.127  Sum_probs=59.2

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .++++|+++...   .....+..+..+++|++|+++++.+... ......+++|++|+|.++.++...- ..+..+++|+
T Consensus       104 ~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~  179 (477)
T 2id5_A          104 SNLTKLDISENK---IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLI  179 (477)
T ss_dssp             TTCCEEECTTSC---CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCC
T ss_pred             CCCCEEECCCCc---cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCc
Confidence            466666666111   1112233445566666666666554221 1233346666666666665332111 1233455555


Q ss_pred             eEEeeec------------------------cccceeec----ccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          174 HLEFVRY------------------------NNLVNVSS----CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       174 ~L~l~~c------------------------~~~~~~~~----~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      .|++.++                        .....+..    ..+|++|++.++.++.-.. .....+++|++|+++++
T Consensus       180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY-LAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH-HHHTTCTTCCEEECCSS
T ss_pred             EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH-HHhcCccccCeeECCCC
Confidence            5555443                        22211111    2255555555554442211 33456677777777665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.43  E-value=1.1e-07  Score=81.19  Aligned_cols=145  Identities=17%  Similarity=0.155  Sum_probs=83.6

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .+++.|+++...   .....+..+..+++|++|+|+++.+... +....+++|++|+|+++.++.  +......+|+|+.
T Consensus        31 ~~l~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~  104 (290)
T 1p9a_G           31 KDTTILHLSENL---LYTFSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTV  104 (290)
T ss_dssp             TTCCEEECTTSC---CSEEEGGGGTTCTTCCEEECTTSCCCEE-ECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCE
T ss_pred             CCCCEEEcCCCc---CCccCHHHhhcCCCCCEEECCCCccCcc-cCCCCCCcCCEEECCCCcCCc--CchhhccCCCCCE
Confidence            456677776111   1111233455677888888888776432 223567888888888777431  2223456778888


Q ss_pred             EEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeecc
Q 042585          175 LEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINTC  246 (286)
Q Consensus       175 L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~c  246 (286)
                      |+++++...    ..+..+++|+.|+++++.++.-. ......+++|+.|+++++. ++.+.   + ..++|+.|+++++
T Consensus       105 L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC
Confidence            888766432    11333778888888776554311 1223467778888887753 22221   1 2367777777766


Q ss_pred             c
Q 042585          247 E  247 (286)
Q Consensus       247 ~  247 (286)
                      .
T Consensus       183 ~  183 (290)
T 1p9a_G          183 S  183 (290)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.41  E-value=1.1e-07  Score=87.52  Aligned_cols=151  Identities=16%  Similarity=0.146  Sum_probs=102.1

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccC---CcCcccCCCccEEEcceeeeChHHHHHHHhcCCC
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL---GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPL  171 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~  171 (286)
                      .++++|+++...   -....|..+..+++|+.|++++|.+...   ......+++|++|+|+++.++...-......+++
T Consensus       324 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          324 SPFLHLDFSNNL---LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             CCCCEEECCSSC---CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             CcccEEEeECCc---cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            355666665111   1223466677889999999999988531   1224579999999999998543211123456899


Q ss_pred             cceEEeeeccccceeec--ccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeec
Q 042585          172 LQHLEFVRYNNLVNVSS--CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINT  245 (286)
Q Consensus       172 Le~L~l~~c~~~~~~~~--~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~  245 (286)
                      |+.|++++|.....+..  .++|+.|+++++.++.  +......+++|++|++++|. ++.+.   + ..++|+.|++++
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHT  477 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECcCCCCCcchhhhhcccCCEEECCCCcccc--cchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcC
Confidence            99999998864322222  3799999999887662  11223489999999999984 33332   2 247899999998


Q ss_pred             ccCCcc
Q 042585          246 CESNTI  251 (286)
Q Consensus       246 c~~~~~  251 (286)
                      ++....
T Consensus       478 N~~~c~  483 (520)
T 2z7x_B          478 NPWDCS  483 (520)
T ss_dssp             SCBCCC
T ss_pred             CCCccc
Confidence            865444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.41  E-value=1.2e-07  Score=79.99  Aligned_cols=126  Identities=21%  Similarity=0.207  Sum_probs=72.7

Q ss_pred             CCceEEEEEeccCCCcccCCC-cchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLP-QMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|+++...    -..++ ..+..+++|++|+++++.+....+ ....+++|++|+|+++.++.... ..+..+++|
T Consensus        28 ~~l~~L~ls~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCC----CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTC
T ss_pred             CCccEEECCCCc----ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccc
Confidence            457777776111    11222 245567788888888876643222 34557788888888776432211 123457778


Q ss_pred             ceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          173 QHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       173 e~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      +.|++.++...    ..+..+++|+.|++.++.++.-.+......+++|++|++++|
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence            88877765432    123336777777777665543111133456677777777775

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.41  E-value=7.3e-07  Score=79.00  Aligned_cols=86  Identities=17%  Similarity=0.154  Sum_probs=40.5

Q ss_pred             chhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccC
Q 042585          117 MVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKN  191 (286)
Q Consensus       117 ~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~  191 (286)
                      .+..+++|++|+++++.+....+. ...+++|++|+|+++.++.-. ..++..+++|+.|+++++....    .+..+++
T Consensus        88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  166 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS  166 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred             hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCC-HHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence            344556666666666555332122 234566666666665533110 1122345666666665543221    1222555


Q ss_pred             CceEEecCcccC
Q 042585          192 LKHLDLCDGSYT  203 (286)
Q Consensus       192 L~~L~l~~~~~~  203 (286)
                      |+.|++.++.++
T Consensus       167 L~~L~l~~n~l~  178 (390)
T 3o6n_A          167 LQNLQLSSNRLT  178 (390)
T ss_dssp             CCEEECCSSCCS
T ss_pred             CCEEECCCCcCC
Confidence            555555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.41  E-value=8.2e-08  Score=88.88  Aligned_cols=38  Identities=29%  Similarity=0.225  Sum_probs=15.9

Q ss_pred             hccCCccEEEEeceeeccCCcC-cccCCCccEEEcceee
Q 042585          119 LRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVY  156 (286)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~  156 (286)
                      ..+++|++|+|+++.+....+. ...+++|++|+|+++.
T Consensus        71 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           71 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             TTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred             cccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence            3444444444444444221111 2334444444444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.40  E-value=2e-06  Score=80.00  Aligned_cols=125  Identities=15%  Similarity=0.106  Sum_probs=86.4

Q ss_pred             hccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeCh-HHHHHHHhcCCCcceEEeeeccccc-----eeecccC
Q 042585          119 LRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADD-QVMNNLFAQSPLLQHLEFVRYNNLV-----NVSSCKN  191 (286)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~~-----~~~~~~~  191 (286)
                      ..+++|++|+++++.+.. .......+++|++|+|+++.++. ..+...+..+++|+.|+++++....     .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            456788888888887744 22344568899999999888553 2334445678999999998775432     1333789


Q ss_pred             CceEEecCcccChhhHHHHHhcC-CCccEEecccccCccccc---cccccccEEEeecccC
Q 042585          192 LKHLDLCDGSYTDEWLNSQISGL-PLLEQLHISLCNNIESIT---ISSLRLKKLIINTCES  248 (286)
Q Consensus       192 L~~L~l~~~~~~~~~l~~~~~~~-p~L~~L~l~~c~~~~~~~---i~~p~L~~L~ls~c~~  248 (286)
                      |+.|+++++.+++.    +.... ++|++|+++++. ++.+.   ...++|+.|+++++.-
T Consensus       430 L~~L~l~~n~l~~~----~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l  485 (562)
T 3a79_B          430 ILVLNLSSNMLTGS----VFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQL  485 (562)
T ss_dssp             CCEEECCSSCCCGG----GGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCC
T ss_pred             CCEEECCCCCCCcc----hhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCC
Confidence            99999998877653    23334 689999999973 33322   1458999999998754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.40  E-value=3.5e-07  Score=85.71  Aligned_cols=59  Identities=17%  Similarity=0.079  Sum_probs=27.6

Q ss_pred             ccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeecccC
Q 042585          189 CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINTCES  248 (286)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~c~~  248 (286)
                      +++|+.|++.++.+..... .....+++|++|++++|.......   + ..++|+.|++++|..
T Consensus       375 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  437 (606)
T 3t6q_A          375 LSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL  437 (606)
T ss_dssp             CTTCCEEECCSCSCEEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred             CCCCCEEECCCCcCCcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence            4555555555543322100 122345666666666553211110   1 235677777776643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.40  E-value=2.9e-07  Score=81.60  Aligned_cols=126  Identities=16%  Similarity=0.184  Sum_probs=88.3

Q ss_pred             CCceEEEEEeccCCCcccCCCcc-hhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQM-VLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .+++.+++...    .-..+|.. +..+++|++|+++++.+....+ ....+++|++|+|.++.++...- ..+..+++|
T Consensus        45 ~~l~~l~l~~~----~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  119 (390)
T 3o6n_A           45 NNQKIVTFKNS----TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLL  119 (390)
T ss_dssp             CCCSEEEEESC----EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             CCceEEEecCC----chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCC
Confidence            68889999821    12345554 4578999999999988744322 45679999999999988443211 224678999


Q ss_pred             ceEEeeeccccc---e-eecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          173 QHLEFVRYNNLV---N-VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       173 e~L~l~~c~~~~---~-~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      +.|+++++....   . +..+++|++|++.++.++.-.. .....+++|++|+++++.
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSC
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCc
Confidence            999999875431   1 2338999999999886653211 234678999999998864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.39  E-value=2.3e-07  Score=80.08  Aligned_cols=13  Identities=8%  Similarity=-0.013  Sum_probs=6.8

Q ss_pred             CCCccEEEcceee
Q 042585          144 LLSLRKLHLSDVY  156 (286)
Q Consensus       144 ~~~L~~L~L~~~~  156 (286)
                      +++|++|+|+++.
T Consensus       119 ~~~L~~L~l~~N~  131 (317)
T 3o53_A          119 GQGKKNIYLANNK  131 (317)
T ss_dssp             CSSCEEEECCSSC
T ss_pred             cCCCCEEECCCCC
Confidence            4555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.39  E-value=5e-07  Score=82.09  Aligned_cols=131  Identities=18%  Similarity=0.128  Sum_probs=99.9

Q ss_pred             cchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc-ceeecccCCce
Q 042585          116 QMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL-VNVSSCKNLKH  194 (286)
Q Consensus       116 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~-~~~~~~~~L~~  194 (286)
                      ..+..+++|++|+++++.+... +....+++|++|+|+++.++.-.    +..+++|+.|+++++... ..+..+++|++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~  110 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLDVTPLTKLTY  110 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCCCTTCTTCCE
T ss_pred             cChhHcCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCceeecCCCCcCCE
Confidence            3566789999999999988554 45667999999999999955432    567999999999987532 23444999999


Q ss_pred             EEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecccCCccccccc
Q 042585          195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTCESNTIFSFGS  256 (286)
Q Consensus       195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~~~~~~~~~~  256 (286)
                      |+++++.++.-   . ...+++|++|+++++.- +.+.+. .++|+.|++++|...+...+..
T Consensus       111 L~L~~N~l~~l---~-~~~l~~L~~L~l~~N~l-~~l~l~~l~~L~~L~l~~n~~~~~~~~~~  168 (457)
T 3bz5_A          111 LNCDTNKLTKL---D-VSQNPLLTYLNCARNTL-TEIDVSHNTQLTELDCHLNKKITKLDVTP  168 (457)
T ss_dssp             EECCSSCCSCC---C-CTTCTTCCEEECTTSCC-SCCCCTTCTTCCEEECTTCSCCCCCCCTT
T ss_pred             EECCCCcCCee---c-CCCCCcCCEEECCCCcc-ceeccccCCcCCEEECCCCCccccccccc
Confidence            99998877653   1 46889999999999742 333443 5799999999997666654433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.39  E-value=8.8e-08  Score=84.74  Aligned_cols=126  Identities=12%  Similarity=0.112  Sum_probs=94.6

Q ss_pred             cCCccEEEEeceeecc-----CCcCc-ccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceee---
Q 042585          121 SKSIKVLTLQNYKLES-----LGNDD-VKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVS---  187 (286)
Q Consensus       121 ~~~L~~L~L~~~~~~~-----~~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~---  187 (286)
                      .++|++|+|++|.+..     +.... ...++|++|+|+++.+++.++..+...+++|+.|++++|...    ..+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3689999999988732     10011 124799999999999999999998888999999999988542    1121   


Q ss_pred             --cccCCceEEecCcccChhhHHHH---HhcCCCccEEecccccCcccccc--------ccccccEEEeeccc
Q 042585          188 --SCKNLKHLDLCDGSYTDEWLNSQ---ISGLPLLEQLHISLCNNIESITI--------SSLRLKKLIINTCE  247 (286)
Q Consensus       188 --~~~~L~~L~l~~~~~~~~~l~~~---~~~~p~L~~L~l~~c~~~~~~~i--------~~p~L~~L~ls~c~  247 (286)
                        ..++|++|++++|.+++.+...+   ...+++|++|++++|. +++.++        ..++|+.|++++|.
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence              15889999999998887655444   3678999999999985 333321        23689999999984

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.37  E-value=4.6e-07  Score=88.52  Aligned_cols=127  Identities=17%  Similarity=0.088  Sum_probs=73.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceee-ccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKL-ESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|++++..   -....|..+..+++|++|+|++|.. ... .....++++|++|+|+++.+.... ...+..+++|
T Consensus        24 ~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L   99 (844)
T 3j0a_A           24 NTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH-PDAFQGLFHL   99 (844)
T ss_dssp             TTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC-TTSSCSCSSC
T ss_pred             CCcCEEECCCCc---CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC-HhHccCCccc
Confidence            577888888221   1122244556677788888877633 111 123456777888888777633221 1123467777


Q ss_pred             ceEEeeeccccc----e--eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          173 QHLEFVRYNNLV----N--VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       173 e~L~l~~c~~~~----~--~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      +.|++++|....    .  +..+++|++|+++++.++..........+++|++|+++++
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            777777664321    1  3337777777777765543211123456777777777775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.37  E-value=3.5e-07  Score=84.66  Aligned_cols=128  Identities=18%  Similarity=0.173  Sum_probs=87.7

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      ..+++|+++...   -....|..+..+++|++|+++++.+.... .....+++|++|+|+++.++...-. .+..+++|+
T Consensus        26 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~  101 (549)
T 2z81_A           26 AAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLK  101 (549)
T ss_dssp             TTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-HHTTCTTCC
T ss_pred             CCccEEECcCCc---cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-HhccCCCCc
Confidence            478899998222   11223456678999999999999885432 2456799999999999985543322 246799999


Q ss_pred             eEEeeecccc-----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          174 HLEFVRYNNL-----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       174 ~L~l~~c~~~-----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      .|+++++...     ..+..+++|++|++.++.............+++|++|+++++.
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            9999987532     1233388999999987752211111234578889999988764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.37  E-value=3.6e-07  Score=77.03  Aligned_cols=147  Identities=21%  Similarity=0.229  Sum_probs=77.9

Q ss_pred             CCceEEEEEeccCCCcccCCC-cchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLP-QMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|+++...    -..++ ..+..+++|++|+++++.+.... .....+++|++|++.++.++...-. -+..+++|
T Consensus        52 ~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L  126 (276)
T 2z62_A           52 PELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTL  126 (276)
T ss_dssp             TTCSEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC-CCTTCTTC
T ss_pred             cCCcEEECCCCc----CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch-hcccCCCC
Confidence            567777776211    11222 24556778888888887664322 2344577888888877763321110 14567788


Q ss_pred             ceEEeeeccccc-----eeecccCCceEEecCcccCh---hhHHHHHhcCCCcc-EEecccccCc--cccccccccccEE
Q 042585          173 QHLEFVRYNNLV-----NVSSCKNLKHLDLCDGSYTD---EWLNSQISGLPLLE-QLHISLCNNI--ESITISSLRLKKL  241 (286)
Q Consensus       173 e~L~l~~c~~~~-----~~~~~~~L~~L~l~~~~~~~---~~l~~~~~~~p~L~-~L~l~~c~~~--~~~~i~~p~L~~L  241 (286)
                      +.|+++++....     .+..+++|++|+++++.++.   ..+ .-....+.|. +|+++++.--  .......++|+.|
T Consensus       127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L  205 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL  205 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEE
T ss_pred             CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh-hhhhhccccceeeecCCCcccccCccccCCCcccEE
Confidence            888887654321     22236788888887765543   222 1112233332 5666664311  1111222366666


Q ss_pred             Eeeccc
Q 042585          242 IINTCE  247 (286)
Q Consensus       242 ~ls~c~  247 (286)
                      +++++.
T Consensus       206 ~L~~n~  211 (276)
T 2z62_A          206 ALDTNQ  211 (276)
T ss_dssp             ECCSSC
T ss_pred             ECCCCc
Confidence            666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.36  E-value=3.8e-06  Score=73.35  Aligned_cols=61  Identities=20%  Similarity=0.144  Sum_probs=35.8

Q ss_pred             ccCCceEEecCcccChhhHHH---HHhcCCCccEEecccccCccccc----cccccccEEEeecccCCc
Q 042585          189 CKNLKHLDLCDGSYTDEWLNS---QISGLPLLEQLHISLCNNIESIT----ISSLRLKKLIINTCESNT  250 (286)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~l~~---~~~~~p~L~~L~l~~c~~~~~~~----i~~p~L~~L~ls~c~~~~  250 (286)
                      .+.++.+++.++.+++..+..   ....+++|++|+++++.- +.+.    -..++|+.|++++++...
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC-CccCHHHHhcCCCCCEEEeeCCCccC
Confidence            445555555555555443322   245778888888888632 2222    124788888888775443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.36  E-value=9.3e-07  Score=82.96  Aligned_cols=105  Identities=19%  Similarity=0.162  Sum_probs=53.5

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .+++.|++....   .....|..+..+++|++|+|+++.+....+. ...+++|++|+|+++.++.- -..++..+++|+
T Consensus        75 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~  150 (597)
T 3oja_B           75 RQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLT  150 (597)
T ss_dssp             CCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred             CCCcEEECCCCC---CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCC
Confidence            566777766111   0111122445666777777776666432222 34566677777766663311 111234566666


Q ss_pred             eEEeeeccccc----eeecccCCceEEecCcccC
Q 042585          174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYT  203 (286)
Q Consensus       174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~  203 (286)
                      .|+++++....    .+..+++|+.|+++++.++
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            66666553221    1222566666666655544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.36  E-value=1.2e-06  Score=75.79  Aligned_cols=146  Identities=16%  Similarity=0.139  Sum_probs=75.8

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++|++....   -....|..+..+++|++|+++++.+... + ...+++|++|++.++.++...- ..+..+++|+.
T Consensus        76 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~-~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~  149 (330)
T 1xku_A           76 KNLHTLILINNK---ISKISPGAFAPLVKLERLYLSKNQLKEL-P-EKMPKTLQELRVHENEITKVRK-SVFNGLNQMIV  149 (330)
T ss_dssp             TTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCSBC-C-SSCCTTCCEEECCSSCCCBBCH-HHHTTCTTCCE
T ss_pred             CCCCEEECCCCc---CCeeCHHHhcCCCCCCEEECCCCcCCcc-C-hhhcccccEEECCCCcccccCH-hHhcCCccccE
Confidence            567777777211   1122245566777888888877766432 1 1223667777776665332211 22345666666


Q ss_pred             EEeeecccc------ceeecc---------------------cCCceEEecCcccChhhHHHHHhcCCCccEEecccccC
Q 042585          175 LEFVRYNNL------VNVSSC---------------------KNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNN  227 (286)
Q Consensus       175 L~l~~c~~~------~~~~~~---------------------~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~  227 (286)
                      |+++++...      ..+..+                     ++|++|+++++.++.... .....+++|++|+++++.-
T Consensus       150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l  228 (330)
T 1xku_A          150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSI  228 (330)
T ss_dssp             EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcC
Confidence            666554321      011113                     455555555554432111 2234667777777777632


Q ss_pred             cccc--cc-ccccccEEEeeccc
Q 042585          228 IESI--TI-SSLRLKKLIINTCE  247 (286)
Q Consensus       228 ~~~~--~i-~~p~L~~L~ls~c~  247 (286)
                      -...  .+ ..++|+.|+++++.
T Consensus       229 ~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          229 SAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             CEECTTTGGGSTTCCEEECCSSC
T ss_pred             ceeChhhccCCCCCCEEECCCCc
Confidence            1111  11 23678888888774

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.35  E-value=4.3e-07  Score=83.18  Aligned_cols=124  Identities=19%  Similarity=0.093  Sum_probs=61.3

Q ss_pred             CCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccce--eecccCCceEEec
Q 042585          122 KSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVN--VSSCKNLKHLDLC  198 (286)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~~~~~L~~L~l~  198 (286)
                      ++|+.|+|+++.+....+ ....+++|++|+|+++.++......+...+++|+.|+++++.....  ...+++|+.|+++
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls  199 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS  199 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC
Confidence            455666666655533212 2334566666666666544333333334566666666665532211  1115666666666


Q ss_pred             CcccChhhHHHHHhcCCCccEEecccccCccccc--c-ccccccEEEeecccC
Q 042585          199 DGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT--I-SSLRLKKLIINTCES  248 (286)
Q Consensus       199 ~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~--i-~~p~L~~L~ls~c~~  248 (286)
                      ++.++.-.  .-...+++|+.|+++++.-. .+.  + ..++|+.|+++++..
T Consensus       200 ~N~l~~~~--~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          200 SNKLAFMG--PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             SSCCCEEC--GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred             CCCCCCCC--HhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence            65544311  11345566666666665321 111  1 125666666666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.34  E-value=6.3e-07  Score=70.41  Aligned_cols=126  Identities=14%  Similarity=0.108  Sum_probs=89.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++|+++...    -..+|......++|+.|+++++.+... +....+++|++|+|+++.++.-. ..+...+|+|+.
T Consensus        19 ~~L~~L~l~~n~----l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~   92 (176)
T 1a9n_A           19 VRDRELDLRGYK----IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTE   92 (176)
T ss_dssp             TSCEEEECTTSC----CCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCE
T ss_pred             CCceEEEeeCCC----CchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccC-cchhhcCCCCCE
Confidence            478888888222    113444333344999999999988554 55667999999999999854321 123467999999


Q ss_pred             EEeeecccc--c---eeecccCCceEEecCcccChhh--HHHHHhcCCCccEEeccccc
Q 042585          175 LEFVRYNNL--V---NVSSCKNLKHLDLCDGSYTDEW--LNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       175 L~l~~c~~~--~---~~~~~~~L~~L~l~~~~~~~~~--l~~~~~~~p~L~~L~l~~c~  226 (286)
                      |+++++...  .   .+..+++|+.|++.++.++...  -..+...+|+|++|+++++.
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            999987542  2   2334899999999988765421  12357789999999998864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.34  E-value=6.6e-07  Score=83.03  Aligned_cols=84  Identities=24%  Similarity=0.098  Sum_probs=44.2

Q ss_pred             ccCCCccEEEcceeeeChHH-HHHHHhcCCCcceEEeeecccc---ceeecccCCceEEecCcccChhhHHHHHhcCCCc
Q 042585          142 VKLLSLRKLHLSDVYADDQV-MNNLFAQSPLLQHLEFVRYNNL---VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLL  217 (286)
Q Consensus       142 ~~~~~L~~L~L~~~~~~~~~-l~~l~~~cp~Le~L~l~~c~~~---~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L  217 (286)
                      ..+++|++|+++++.++... .......+++|+.|++++|...   ..+..+++|++|++.++.+...........+++|
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            45777777777777633211 1122456788888888766432   1133366677776666544321100122345555


Q ss_pred             cEEecccc
Q 042585          218 EQLHISLC  225 (286)
Q Consensus       218 ~~L~l~~c  225 (286)
                      ++|++++|
T Consensus       424 ~~L~l~~n  431 (570)
T 2z63_A          424 IYLDISHT  431 (570)
T ss_dssp             CEEECTTS
T ss_pred             CEEeCcCC
Confidence            55555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.32  E-value=5.3e-07  Score=85.29  Aligned_cols=126  Identities=11%  Similarity=0.016  Sum_probs=80.8

Q ss_pred             CCceEEEEEeccCCCcccC-----------------CCcchh--ccCCccEEEEeceeecc-CCcCcccCCCccEEEcce
Q 042585           95 RNVEELEVEHLRRLDTWNS-----------------LPQMVL--RSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSD  154 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~-----------------l~~~~~--~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~  154 (286)
                      .++++|+++...   -...                 +|..+.  .+++|++|+|++|.+.. .+....++++|++|+|++
T Consensus       206 ~~L~~L~Ls~n~---l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          206 TKLRQFYMGNSP---FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC  282 (636)
T ss_dssp             TTCCEEEEESCC---CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred             cCCCEEECcCCc---cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence            589999999221   1111                 888888  99999999999998733 334456799999999999


Q ss_pred             ee-eCh-H---HHHHH--HhcCCCcceEEeeecccc--c---eeecccCCceEEecCcccChhhHHHHHhcCCCccEEec
Q 042585          155 VY-ADD-Q---VMNNL--FAQSPLLQHLEFVRYNNL--V---NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHI  222 (286)
Q Consensus       155 ~~-~~~-~---~l~~l--~~~cp~Le~L~l~~c~~~--~---~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l  222 (286)
                      +. ++. .   .+..+  ...+++|+.|+++++...  .   .+..+++|+.|++.++.++.. + .....+++|++|++
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~-i-p~~~~l~~L~~L~L  360 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-L-PAFGSEIKLASLNL  360 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE-C-CCCEEEEEESEEEC
T ss_pred             CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc-h-hhhCCCCCCCEEEC
Confidence            98 776 2   22222  123588888888876433  1   123367777777776655421 1 02234455666665


Q ss_pred             ccc
Q 042585          223 SLC  225 (286)
Q Consensus       223 ~~c  225 (286)
                      +++
T Consensus       361 ~~N  363 (636)
T 4eco_A          361 AYN  363 (636)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.30  E-value=7.6e-07  Score=72.71  Aligned_cols=125  Identities=13%  Similarity=0.054  Sum_probs=73.3

Q ss_pred             CCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEE
Q 042585          122 KSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLD  196 (286)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~  196 (286)
                      ++|+.|+++++.+....+ ....+++|++|+|+++.++.-. ...+..+++|+.|+++++...    ..+..+++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            577888888877644222 3445778888888877743211 112355778888888765432    1123367888888


Q ss_pred             ecCcccChhhHHHHHhcCCCccEEecccccCc--ccccc-ccccccEEEeecccC
Q 042585          197 LCDGSYTDEWLNSQISGLPLLEQLHISLCNNI--ESITI-SSLRLKKLIINTCES  248 (286)
Q Consensus       197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~--~~~~i-~~p~L~~L~ls~c~~  248 (286)
                      ++++.++.-.. .....+++|++|+++++.--  ..-.+ ..++|+.|++++.+.
T Consensus       111 L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          111 LNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            88766543211 23346778888888776321  11112 136777787776543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=8.1e-07  Score=86.73  Aligned_cols=147  Identities=14%  Similarity=0.052  Sum_probs=97.2

Q ss_pred             CCceEEEEEeccCCCcc-------c---------CCCcchh--ccCCccEEEEeceeecc-CCcCcccCCCccEEEccee
Q 042585           95 RNVEELEVEHLRRLDTW-------N---------SLPQMVL--RSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDV  155 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~-------~---------~l~~~~~--~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~  155 (286)
                      .++++|+++...  ...       .         .+|..+.  .+++|+.|+|++|.+.. .+.....+++|++|+|+++
T Consensus       448 ~~L~~L~Ls~N~--Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          448 TKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             TTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             CCCCEEECcCCc--CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            689999999221  011       1         2788877  99999999999987633 3344567999999999999


Q ss_pred             e-eCh----HHHHHHH---hcCCCcceEEeeecccc--c---eeecccCCceEEecCcccChhhHHHHHhcCCCccEEec
Q 042585          156 Y-ADD----QVMNNLF---AQSPLLQHLEFVRYNNL--V---NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHI  222 (286)
Q Consensus       156 ~-~~~----~~l~~l~---~~cp~Le~L~l~~c~~~--~---~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l  222 (286)
                      . ++.    ..+..+.   ..+|+|+.|+++++...  .   .+..+++|+.|+++++.++.  +. ....+++|+.|++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~--lp-~~~~L~~L~~L~L  602 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LE-AFGTNVKLTDLKL  602 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB--CC-CCCTTSEESEEEC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc--ch-hhcCCCcceEEEC
Confidence            8 775    2233322   45679999999887543  1   23337889999998876652  21 3456778888888


Q ss_pred             ccccCccccc--c-cccc-ccEEEeeccc
Q 042585          223 SLCNNIESIT--I-SSLR-LKKLIINTCE  247 (286)
Q Consensus       223 ~~c~~~~~~~--i-~~p~-L~~L~ls~c~  247 (286)
                      +++.-. .+.  + ..++ |+.|+++++.
T Consensus       603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             CSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred             cCCccc-cchHHHhhccccCCEEECcCCC
Confidence            776422 221  1 1244 6666666654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.30  E-value=9.6e-07  Score=71.19  Aligned_cols=133  Identities=20%  Similarity=0.178  Sum_probs=91.6

Q ss_pred             cCCCcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----ee
Q 042585          112 NSLPQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NV  186 (286)
Q Consensus       112 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~  186 (286)
                      ..+|..+  .++|++|+++++.+....+. ...+++|++|+|.++.++.-. ...+..+++|+.|+++++....    .+
T Consensus        20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   96 (208)
T 2o6s_A           20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQLQSLPNGVF   96 (208)
T ss_dssp             SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence            3445433  46899999999988553233 457999999999998854221 1234678999999999875331    13


Q ss_pred             ecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeecccCC
Q 042585          187 SSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINTCESN  249 (286)
Q Consensus       187 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~c~~~  249 (286)
                      ..+++|+.|++.++.++.-. ......+++|++|+++++.- +.+.   + ..++|+.|+++++...
T Consensus        97 ~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           97 DKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCee
Confidence            34899999999988765321 12346789999999999742 2221   2 2479999999987543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.30  E-value=5.4e-07  Score=74.06  Aligned_cols=101  Identities=21%  Similarity=0.224  Sum_probs=44.2

Q ss_pred             CCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCCceEE
Q 042585          122 KSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNLKHLD  196 (286)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L~~L~  196 (286)
                      ++|+.|+|+++.+....+ ....+++|++|+|+++.++.-. ...+..+++|+.|+++++....    .+..+++|+.|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            455555555555533211 2234555555555555532110 0112345555555555442211    112255555555


Q ss_pred             ecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          197 LCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      ++++.++.  +......+++|++|+++++
T Consensus       119 Ls~N~l~~--lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A          119 MCCNKLTE--LPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             CCSSCCCS--CCTTGGGCTTCSEEECCSS
T ss_pred             ccCCcccc--cCcccccCCCCCEEECCCC
Confidence            55544331  1011245555555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=8.7e-07  Score=86.54  Aligned_cols=132  Identities=16%  Similarity=0.185  Sum_probs=65.6

Q ss_pred             CCCcchh-ccCCccEEEEeceeeccCCcCcc--------cCCCccEEEcceeeeChHHHHHHHh--cCCCcceEEeeecc
Q 042585          113 SLPQMVL-RSKSIKVLTLQNYKLESLGNDDV--------KLLSLRKLHLSDVYADDQVMNNLFA--QSPLLQHLEFVRYN  181 (286)
Q Consensus       113 ~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~--------~~~~L~~L~L~~~~~~~~~l~~l~~--~cp~Le~L~l~~c~  181 (286)
                      .+|..++ .+++|+.|+|+++.+........        ++++|++|+|+++.++  .+...+.  .+|+|+.|+++++.
T Consensus       687 ~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~  764 (876)
T 4ecn_A          687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNC  764 (876)
T ss_dssp             SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSC
T ss_pred             ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCC
Confidence            3454444 45666666666665532211111        1226666666666643  1222222  56667777776553


Q ss_pred             ccc---eeecccCCceEEecC------cccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecccC
Q 042585          182 NLV---NVSSCKNLKHLDLCD------GSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTCES  248 (286)
Q Consensus       182 ~~~---~~~~~~~L~~L~l~~------~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~~  248 (286)
                      ...   .+..+++|+.|++++      +.+... +......+++|+.|++++|.- +.+... .++|+.|++++|+.
T Consensus       765 L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          765 FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN  839 (876)
T ss_dssp             CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred             CCccchhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence            221   122266677777654      222211 001234567777777776643 333211 25677777777653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.30  E-value=5.7e-07  Score=76.65  Aligned_cols=146  Identities=17%  Similarity=0.087  Sum_probs=94.2

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++|+++...    -..++.. ..+++|+.|+++++.+.........+++|++|+|+++.++.-. ...+..+++|+.
T Consensus        55 ~~L~~L~L~~n~----l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~~l~~L~~  128 (290)
T 1p9a_G           55 TRLTQLNLDRAE----LTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP-LGALRGLGELQE  128 (290)
T ss_dssp             TTCCEEECTTSC----CCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCC-SSTTTTCTTCCE
T ss_pred             CCCCEEECCCCc----cCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccC-HHHHcCCCCCCE
Confidence            578888887211    1122222 5678899999999888654344567899999999988844211 112456889999


Q ss_pred             EEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccC--ccccccccccccEEEeeccc
Q 042585          175 LEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNN--IESITISSLRLKKLIINTCE  247 (286)
Q Consensus       175 L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~--~~~~~i~~p~L~~L~ls~c~  247 (286)
                      |+++++....    .+..+++|+.|+++++.++.-. ..+...+++|++|+++++.-  +..-....+.|+.|.+++.+
T Consensus       129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             EECCCCCCCccChhhcccccCCCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            9998764321    1223789999999987665311 12345688999999988642  21112234678888887544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.30  E-value=4.8e-07  Score=81.71  Aligned_cols=129  Identities=19%  Similarity=0.121  Sum_probs=87.7

Q ss_pred             ccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCCce
Q 042585          120 RSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNLKH  194 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L~~  194 (286)
                      .+++|+.|+++++.+... ......+++|++|+|+++.+++..-. .+..+++|+.|+++++....    .+..+++|+.
T Consensus       273 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  351 (455)
T 3v47_A          273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN-AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV  351 (455)
T ss_dssp             TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred             cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh-HhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence            347899999999877442 23355689999999999885432211 24568999999999875431    2233889999


Q ss_pred             EEecCcccChhhHHHHHhcCCCccEEecccccCccccc----cccccccEEEeecccCCcc
Q 042585          195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT----ISSLRLKKLIINTCESNTI  251 (286)
Q Consensus       195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~----i~~p~L~~L~ls~c~~~~~  251 (286)
                      |+++++.++.... .....+++|++|+++++.- +.+.    -..++|+.|++++++....
T Consensus       352 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          352 LDLSYNHIRALGD-QSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             EECCSSCCCEECT-TTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EECCCCcccccCh-hhccccccccEEECCCCcc-ccCCHhHhccCCcccEEEccCCCcccC
Confidence            9999887654211 2345789999999998742 2222    1347899999988765444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.29  E-value=1e-06  Score=69.96  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=17.7

Q ss_pred             CCCccEEEcceeeeChHHHHHHH---hcCCCcceEEeeec
Q 042585          144 LLSLRKLHLSDVYADDQVMNNLF---AQSPLLQHLEFVRY  180 (286)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~l~---~~cp~Le~L~l~~c  180 (286)
                      .++|++|+|+++.+++.+...+.   ..++.|++|+|++|
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            44555555555555554433332   23445555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.28  E-value=1.6e-06  Score=74.98  Aligned_cols=123  Identities=15%  Similarity=0.147  Sum_probs=80.8

Q ss_pred             CCceEEEEEeccCCCcccCCCc-chhccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQ-MVLRSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      ..++.|+++...    -..++. .+..+++|++|+|+++.+... ......+++|++|+|+++.++.-.    ...+++|
T Consensus        52 ~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~L  123 (330)
T 1xku_A           52 PDTALLDLQNNK----ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTL  123 (330)
T ss_dssp             TTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC----SSCCTTC
T ss_pred             CCCeEEECCCCc----CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC----hhhcccc
Confidence            467888887221    122333 566789999999999888543 234556899999999988744211    1234889


Q ss_pred             ceEEeeeccccc----eeecccCCceEEecCcccChhh-HHHHHhcCCCccEEecccc
Q 042585          173 QHLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEW-LNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       173 e~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~-l~~~~~~~p~L~~L~l~~c  225 (286)
                      ++|+++++....    .+..+++|+.|++.++.+.... .......+++|++|+++++
T Consensus       124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  181 (330)
T 1xku_A          124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  181 (330)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence            999998775431    1333899999999987664311 1123456788888888775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.28  E-value=4.5e-07  Score=86.16  Aligned_cols=106  Identities=22%  Similarity=0.160  Sum_probs=50.3

Q ss_pred             hhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCC
Q 042585          118 VLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNL  192 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L  192 (286)
                      +..+++|++|+|+++.+....+ ....+++|++|+|+++.++.-. ...+..|++|++|+++++...    ..+..+++|
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL  123 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC-hhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence            4456666666666655533212 2234666666666665522110 011334666666666654321    112225566


Q ss_pred             ceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          193 KHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       193 ~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      ++|++.++.++.... .....+++|++|+++++
T Consensus       124 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n  155 (680)
T 1ziw_A          124 ITLDLSHNGLSSTKL-GTQVQLENLQELLLSNN  155 (680)
T ss_dssp             CEEECCSSCCSCCCC-CSSSCCTTCCEEECCSS
T ss_pred             CEEECCCCcccccCc-hhhcccccCCEEEccCC
Confidence            666666554432110 11234556666666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.27  E-value=1.2e-06  Score=82.82  Aligned_cols=37  Identities=11%  Similarity=0.144  Sum_probs=19.9

Q ss_pred             cCCCcceEEeeeccccc----eeecccCCceEEecCcc-cCh
Q 042585          168 QSPLLQHLEFVRYNNLV----NVSSCKNLKHLDLCDGS-YTD  204 (286)
Q Consensus       168 ~cp~Le~L~l~~c~~~~----~~~~~~~L~~L~l~~~~-~~~  204 (286)
                      .+++|+.|++++|....    .+..+++|+.|+++++. ++.
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~  288 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG  288 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence            56666666666654321    12225666666666654 443

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.26  E-value=5.2e-07  Score=76.47  Aligned_cols=38  Identities=26%  Similarity=0.529  Sum_probs=34.9

Q ss_pred             cccCCCCCHHHHHHHHccCChhhHH-HhhhhhhhhHhhh
Q 042585           14 VDRISALPQPILQLIMSFLPFKQVV-QICMVSKVWLQAW   51 (286)
Q Consensus        14 ~d~i~~LPdeil~~Ils~L~~~d~~-~~~~vskrW~~lw   51 (286)
                      ...+..||+|++.+||++||.++++ +++.|||+|+.+.
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~   86 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV   86 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence            4578899999999999999999999 9999999999863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.26  E-value=5.5e-07  Score=74.93  Aligned_cols=127  Identities=17%  Similarity=0.084  Sum_probs=89.1

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .++++|+++...   .....+..+..+++|+.|+|+++.+....+ ....+++|++|+|+++.++.-. ...+..+++|+
T Consensus        59 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~  134 (251)
T 3m19_A           59 TKLTWLNLDYNQ---LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-SGVFDRLTKLK  134 (251)
T ss_dssp             TTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             ccCCEEECCCCc---CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC-hhHhccCCccc
Confidence            689999998221   112223345678999999999998855333 3457999999999999854211 12245789999


Q ss_pred             eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      .|+++++....    .+..+++|+.|++.++.++.-.. .....+++|++|++.++.
T Consensus       135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred             EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCc
Confidence            99999874331    23338999999999887664211 234678999999999964

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.26  E-value=4.8e-07  Score=73.88  Aligned_cols=126  Identities=20%  Similarity=0.185  Sum_probs=87.7

Q ss_pred             CCceEEEEEeccCCCcccCCCc-chhccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQ-MVLRSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|++....    -..++. .+..+++|+.|+|+++.+... .....++++|++|+|+++.++.-. ..++..+++|
T Consensus        32 ~~l~~L~l~~n~----i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQNT----IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP-KSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSSC----CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             cCCCEEECCCCc----CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC-HhHccCCCCC
Confidence            478888888211    112333 456789999999999888543 234567999999999999844211 1234678999


Q ss_pred             ceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          173 QHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       173 e~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      +.|+++++...    ..+..+++|+.|++.++.++.-.. .....+++|++|++++++
T Consensus       107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCC
Confidence            99999977543    223348999999999887654211 234568999999999954

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.25  E-value=1.1e-06  Score=72.19  Aligned_cols=127  Identities=17%  Similarity=0.052  Sum_probs=85.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .+++.|+++...   .....|..+..+++|++|+|+++.+....+. ...+++|++|+|+++.++.-. ...+..+++|+
T Consensus        40 ~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~  115 (229)
T 3e6j_A           40 TNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHLK  115 (229)
T ss_dssp             TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             CCCCEEEcCCCc---cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC-hhHhCcchhhC
Confidence            467888887221   1122244566788999999999888543333 356899999999998844211 12245689999


Q ss_pred             eEEeeecccc---ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          174 HLEFVRYNNL---VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       174 ~L~l~~c~~~---~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      .|+++++...   ..+..+++|+.|+++++.++.-.- .....+++|++|++.+++
T Consensus       116 ~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          116 ELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred             eEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCC
Confidence            9999876433   122238899999999876653211 334678899999998854

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.25  E-value=8.1e-07  Score=72.53  Aligned_cols=106  Identities=12%  Similarity=0.120  Sum_probs=48.0

Q ss_pred             hhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCC
Q 042585          118 VLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNL  192 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L  192 (286)
                      +..+++|++|+|+++.+....+ ....+++|++|+|+++.++... ...+..+++|+.|+++++...    ..+..+++|
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  131 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV  131 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred             hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence            3455566666665555533212 2334555666666655522111 011334556666666544321    112225556


Q ss_pred             ceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          193 KHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       193 ~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      +.|+++++.++.-.. .....+++|++|+++++
T Consensus       132 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          132 RLLSLYDNQITTVAP-GAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             SEEECTTSCCCCBCT-TTTTTCTTCCEEECCSC
T ss_pred             CEEECCCCcCCEECH-HHhcCCCCCCEEEecCc
Confidence            666665554332100 12234555555555553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.24  E-value=4.2e-07  Score=85.19  Aligned_cols=126  Identities=21%  Similarity=0.207  Sum_probs=81.8

Q ss_pred             CCceEEEEEeccCCCcccCCC-cchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLP-QMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|+|++..    -..+| ..+..+++|++|+|++|.+....+ ...++++|++|+|+++.++.-.- ..+.++++|
T Consensus        52 ~~~~~LdLs~N~----i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG-GGGTTCTTC
T ss_pred             cCCCEEEeeCCC----CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH-HHhcCCCCC
Confidence            467888887211    12333 345678889999998887754323 34568889999998887432111 124668889


Q ss_pred             ceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          173 QHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       173 e~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      +.|+++++...    ..+..+++|++|++.++.+..-........+++|++|+++++
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            99998876432    123447889999988776543211134567888888888876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.23  E-value=3.5e-06  Score=79.05  Aligned_cols=77  Identities=22%  Similarity=0.232  Sum_probs=50.4

Q ss_pred             CCceEEEEEeccCCCcccCCCcch-hccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMV-LRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .+++.|+++...    -..+|..+ ..+++|+.|+|++|.+....+ ....+++|++|+|+++.++...    ...+|+|
T Consensus       123 ~~L~~L~L~~n~----l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L  194 (597)
T 3oja_B          123 PLLTVLVLERND----LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSL  194 (597)
T ss_dssp             TTCCEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTC
T ss_pred             CCCCEEEeeCCC----CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhh
Confidence            578888888221    12555553 578899999999988754323 3556889999999988754322    2345555


Q ss_pred             ceEEeee
Q 042585          173 QHLEFVR  179 (286)
Q Consensus       173 e~L~l~~  179 (286)
                      +.|++++
T Consensus       195 ~~L~l~~  201 (597)
T 3oja_B          195 FHANVSY  201 (597)
T ss_dssp             SEEECCS
T ss_pred             hhhhccc
Confidence            5555543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.22  E-value=3.1e-07  Score=77.17  Aligned_cols=35  Identities=23%  Similarity=0.461  Sum_probs=32.6

Q ss_pred             cCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhh
Q 042585           16 RISALPQPILQLIMSFLPFKQVVQICMVSKVWLQA   50 (286)
Q Consensus        16 ~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~l   50 (286)
                      .|+.||+||+.+|||||+++|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999863

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.20  E-value=2.5e-06  Score=81.08  Aligned_cols=127  Identities=20%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .++++|+++...   -....|..+..+++|++|+|+++.+....+ ....+++|++|+|+++.++.-.- ..+..+++|+
T Consensus        49 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~  124 (680)
T 1ziw_A           49 SQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLI  124 (680)
T ss_dssp             TTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS-CTTTTCTTCC
T ss_pred             CcCcEEECCCCc---cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh-hHccccCCCC
Confidence            688999998222   122335567789999999999988855333 35679999999999987432110 1245799999


Q ss_pred             eEEeeecccc----ceeecccCCceEEecCcccChhhHHHHH-hcCCCccEEecccc
Q 042585          174 HLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQI-SGLPLLEQLHISLC  225 (286)
Q Consensus       174 ~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~-~~~p~L~~L~l~~c  225 (286)
                      .|+++++...    ..+..+++|++|++.++.++......+. ..+++|++|+++++
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            9999987543    2233489999999998876543222332 36789999999887

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.20  E-value=3.5e-06  Score=74.14  Aligned_cols=62  Identities=29%  Similarity=0.433  Sum_probs=33.8

Q ss_pred             HHHHHhcCCCcceEEeeecccccee-ecccCCceEEecCcccChhhHHHHHh-cCCCccEEecc
Q 042585          162 MNNLFAQSPLLQHLEFVRYNNLVNV-SSCKNLKHLDLCDGSYTDEWLNSQIS-GLPLLEQLHIS  223 (286)
Q Consensus       162 l~~l~~~cp~Le~L~l~~c~~~~~~-~~~~~L~~L~l~~~~~~~~~l~~~~~-~~p~L~~L~l~  223 (286)
                      +..++..+|+|++|.+.++.+...- ...++|++|++..|.++++.+..+.. .+|+|++|++.
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            4455566666666666655322110 01566666666666565555544442 46666666653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.18  E-value=9.5e-07  Score=70.75  Aligned_cols=122  Identities=14%  Similarity=0.166  Sum_probs=88.4

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      -.++++|+++...    -..+| .+..+++|+.|++++|.+..+......+++|++|+|+++.++.  +.. +..+++|+
T Consensus        47 l~~L~~L~ls~n~----l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~~-~~~l~~L~  118 (198)
T 1ds9_A           47 LKACKHLALSTNN----IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSG-IEKLVNLR  118 (198)
T ss_dssp             TTTCSEEECSEEE----ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HHH-HHHHHHSS
T ss_pred             CCCCCEEECCCCC----Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CCc-cccCCCCC
Confidence            3689999998222    12256 7788999999999999986543334457999999999999654  333 55789999


Q ss_pred             eEEeeecccc--c---eeecccCCceEEecCcccChh---------hHHHHHhcCCCccEEecc
Q 042585          174 HLEFVRYNNL--V---NVSSCKNLKHLDLCDGSYTDE---------WLNSQISGLPLLEQLHIS  223 (286)
Q Consensus       174 ~L~l~~c~~~--~---~~~~~~~L~~L~l~~~~~~~~---------~l~~~~~~~p~L~~L~l~  223 (286)
                      .|+++++...  .   .+..+++|+.|++.++.+...         ....+...+|+|++|+-.
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~  182 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence            9999987543  1   233489999999998866432         122346788999998733

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.15  E-value=2.5e-06  Score=69.61  Aligned_cols=133  Identities=18%  Similarity=0.100  Sum_probs=89.7

Q ss_pred             CCCcchhccCCccEEEEeceeeccCCc--CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----cee
Q 042585          113 SLPQMVLRSKSIKVLTLQNYKLESLGN--DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNV  186 (286)
Q Consensus       113 ~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~  186 (286)
                      .+|..+  .+.++.|+|+++.+....+  ....+++|++|+|+++.++.-.- ..+..+++|+.|+++++...    ..+
T Consensus        25 ~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~  101 (220)
T 2v70_A           25 KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSNRLENVQHKMF  101 (220)
T ss_dssp             SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCCCCGGGG
T ss_pred             cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCCCccCccCHhHh
Confidence            455443  3567899999988854322  24579999999999988443211 12467899999999977543    123


Q ss_pred             ecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccc--ccc-ccccccEEEeecccCC
Q 042585          187 SSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIES--ITI-SSLRLKKLIINTCESN  249 (286)
Q Consensus       187 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~--~~i-~~p~L~~L~ls~c~~~  249 (286)
                      ..+++|++|+++++.++.-.. .....+++|++|+++++.--..  -.+ ..++|+.|++++....
T Consensus       102 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          102 KGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             cCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            348999999999887653211 2235789999999999742211  112 2478999999887543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.14  E-value=1.1e-06  Score=81.77  Aligned_cols=151  Identities=16%  Similarity=0.104  Sum_probs=99.9

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC---cCcccCCCccEEEcceeeeChHHHHHHHhcCCC
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG---NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPL  171 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~  171 (286)
                      .++++++++...   .....|..+..+++|+.|+++++.+....   .....+++|++|+|+++.++...-......+++
T Consensus       353 ~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          353 SSFTFLNFTQNV---FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             CCCCEEECCSSC---CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             CCceEEECCCCc---cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            345555555111   11234566678899999999998885421   124579999999999998543111123456899


Q ss_pred             cceEEeeeccccceeec-c-cCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeec
Q 042585          172 LQHLEFVRYNNLVNVSS-C-KNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINT  245 (286)
Q Consensus       172 Le~L~l~~c~~~~~~~~-~-~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~  245 (286)
                      |+.|+++++........ . ++|+.|+++++.++.  +..-...+++|++|+++++.- +.+.   + ..++|+.|++++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~l~~  506 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHD  506 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSSCC-CCCCTTSTTTCTTCCCEECCS
T ss_pred             CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCCCC-CCCCHHHHhcCCCCCEEEecC
Confidence            99999998764322222 3 799999999887652  111123889999999999742 2222   2 247899999998


Q ss_pred             ccCCcc
Q 042585          246 CESNTI  251 (286)
Q Consensus       246 c~~~~~  251 (286)
                      ++...+
T Consensus       507 N~~~c~  512 (562)
T 3a79_B          507 NPWDCT  512 (562)
T ss_dssp             CCBCCC
T ss_pred             CCcCCC
Confidence            765443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.13  E-value=8.2e-06  Score=76.86  Aligned_cols=112  Identities=21%  Similarity=0.157  Sum_probs=66.2

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      ..+++.++++...    -..+|..+.  ++|+.|+|++|.+... +.  .+++|++|+|+++.++.     +-...++|+
T Consensus        39 ~~~l~~L~ls~n~----L~~lp~~l~--~~L~~L~L~~N~l~~l-p~--~l~~L~~L~Ls~N~l~~-----lp~~l~~L~  104 (622)
T 3g06_A           39 NNGNAVLNVGESG----LTTLPDCLP--AHITTLVIPDNNLTSL-PA--LPPELRTLEVSGNQLTS-----LPVLPPGLL  104 (622)
T ss_dssp             HHCCCEEECCSSC----CSCCCSCCC--TTCSEEEECSCCCSCC-CC--CCTTCCEEEECSCCCSC-----CCCCCTTCC
T ss_pred             CCCCcEEEecCCC----cCccChhhC--CCCcEEEecCCCCCCC-CC--cCCCCCEEEcCCCcCCc-----CCCCCCCCC
Confidence            3467888887221    125555443  7888888888877543 22  57888888888887432     112577888


Q ss_pred             eEEeeeccccceee-cccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          174 HLEFVRYNNLVNVS-SCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       174 ~L~l~~c~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      .|+++++... .+. ..++|+.|++.++.++.     +....++|++|++++|
T Consensus       105 ~L~Ls~N~l~-~l~~~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L~Ls~N  151 (622)
T 3g06_A          105 ELSIFSNPLT-HLPALPSGLCKLWIFGNQLTS-----LPVLPPGLQELSVSDN  151 (622)
T ss_dssp             EEEECSCCCC-CCCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS
T ss_pred             EEECcCCcCC-CCCCCCCCcCEEECCCCCCCc-----CCCCCCCCCEEECcCC
Confidence            8888765322 222 25566666666554432     1223456666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.09  E-value=5.5e-06  Score=65.70  Aligned_cols=105  Identities=10%  Similarity=0.079  Sum_probs=78.1

Q ss_pred             ccCCCccEEEccee-eeChHHHHHHH---hcCCCcceEEeeecccc----ceeec----ccCCceEEecCcccChhhHHH
Q 042585          142 VKLLSLRKLHLSDV-YADDQVMNNLF---AQSPLLQHLEFVRYNNL----VNVSS----CKNLKHLDLCDGSYTDEWLNS  209 (286)
Q Consensus       142 ~~~~~L~~L~L~~~-~~~~~~l~~l~---~~cp~Le~L~l~~c~~~----~~~~~----~~~L~~L~l~~~~~~~~~l~~  209 (286)
                      ...++|++|+|+++ .+++.++..+.   ..++.|++|+|++|...    ..++.    .++|++|+++++.+++++...
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            45889999999999 69988776665   45899999999987543    11221    689999999999999877554


Q ss_pred             H---HhcCCCccEEec--ccccCcccccc--------ccccccEEEeeccc
Q 042585          210 Q---ISGLPLLEQLHI--SLCNNIESITI--------SSLRLKKLIINTCE  247 (286)
Q Consensus       210 ~---~~~~p~L~~L~l--~~c~~~~~~~i--------~~p~L~~L~ls~c~  247 (286)
                      +   ....++|++|++  +++. +++.+.        ..+.|+.|+++++.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            4   356788999999  5543 333221        13789999998873

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.09  E-value=1.8e-06  Score=74.72  Aligned_cols=101  Identities=14%  Similarity=0.075  Sum_probs=50.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .+++.|++....   -....|..+..+++|++|+++++.+... ......+++|++|+|+++.++.-  ..  ..+++|+
T Consensus        54 ~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--~~--~~~~~L~  126 (332)
T 2ft3_A           54 PDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI--PP--NLPSSLV  126 (332)
T ss_dssp             TTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC--CS--SCCTTCC
T ss_pred             CCCeEEECCCCc---CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc--Cc--cccccCC
Confidence            356666666111   0111123455667777777777665332 12334567777777776653310  00  1125666


Q ss_pred             eEEeeecccc----ceeecccCCceEEecCccc
Q 042585          174 HLEFVRYNNL----VNVSSCKNLKHLDLCDGSY  202 (286)
Q Consensus       174 ~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~  202 (286)
                      +|+++++...    ..+..+++|+.|++.++.+
T Consensus       127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             EEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            6666654322    1122256666666665544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.06  E-value=1.1e-06  Score=78.96  Aligned_cols=44  Identities=27%  Similarity=0.435  Sum_probs=38.8

Q ss_pred             cCCCcccCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhcc
Q 042585           10 KNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHT   53 (286)
Q Consensus        10 ~~~~~d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~   53 (286)
                      ++-..|.|+.||+|++.+||+||+.+++++++.|||+|+++...
T Consensus         8 ~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B            8 DNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             -CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             cccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            34467899999999999999999999999999999999986544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.06  E-value=2.8e-06  Score=74.57  Aligned_cols=36  Identities=17%  Similarity=0.095  Sum_probs=15.0

Q ss_pred             ccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          189 CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      +++|+.|+++++.++.-.. .....+++|++|+++++
T Consensus       111 l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A          111 LQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             CTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred             CcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCC
Confidence            4455555555443332100 11234455555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.05  E-value=3.9e-06  Score=72.64  Aligned_cols=122  Identities=19%  Similarity=0.206  Sum_probs=82.6

Q ss_pred             CceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           96 NVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        96 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++.+++...    .-..+|..+  .++|+.|+++++.+....+ ....+++|++|+|.++.++...- ..+..+++|+.
T Consensus        34 ~l~~l~~~~~----~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  106 (332)
T 2ft3_A           34 HLRVVQCSDL----GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQK  106 (332)
T ss_dssp             ETTEEECCSS----CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCE
T ss_pred             cCCEEECCCC----CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCE
Confidence            3566665511    223555544  3689999999988754322 45679999999999988543211 12467999999


Q ss_pred             EEeeeccccceeec--ccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          175 LEFVRYNNLVNVSS--CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       175 L~l~~c~~~~~~~~--~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      |+++++... .+..  .++|++|++.++.++.-. ......+++|++|+++++.
T Consensus       107 L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          107 LYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             EECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCSCC
T ss_pred             EECCCCcCC-ccCccccccCCEEECCCCccCccC-HhHhCCCccCCEEECCCCc
Confidence            999976432 2222  589999999988765321 1334678999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.05  E-value=6.3e-06  Score=76.84  Aligned_cols=119  Identities=23%  Similarity=0.224  Sum_probs=66.3

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      ..++.|+++...    -..+|. +..+++|+.|+|+++.+...+.....+++|++|+|+++.++.  +. -+..+++|+.
T Consensus       441 ~~L~~L~Ls~n~----l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~  512 (567)
T 1dce_A          441 ADVRVLHLAHKD----LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQE  512 (567)
T ss_dssp             TTCSEEECTTSC----CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCE
T ss_pred             cCceEEEecCCC----CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcE
Confidence            456677776111    123454 666777777777777665443345557777777777777443  22 2455677777


Q ss_pred             EEeeecccc-----ceeecccCCceEEecCcccChh--hHHHHHhcCCCccEEe
Q 042585          175 LEFVRYNNL-----VNVSSCKNLKHLDLCDGSYTDE--WLNSQISGLPLLEQLH  221 (286)
Q Consensus       175 L~l~~c~~~-----~~~~~~~~L~~L~l~~~~~~~~--~l~~~~~~~p~L~~L~  221 (286)
                      |+++++...     ..+..+++|+.|+++++.++..  ....+...+|+|+.|+
T Consensus       513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            777655321     1122266667776666554321  1223444466666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.05  E-value=3e-06  Score=79.38  Aligned_cols=132  Identities=18%  Similarity=0.129  Sum_probs=89.8

Q ss_pred             cCCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----cee
Q 042585          112 NSLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNV  186 (286)
Q Consensus       112 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~  186 (286)
                      ..+|..+  -+++++|+|+++.+....+ ...++++|++|+|+++.++.-. ...+..+++|++|+|+++...    ..+
T Consensus        44 ~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~f  120 (635)
T 4g8a_A           44 YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAF  120 (635)
T ss_dssp             SSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred             CccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence            4555443  2578999999988855323 4567999999999999743211 112457999999999987532    123


Q ss_pred             ecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcc----ccccccccccEEEeeccc
Q 042585          187 SSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIE----SITISSLRLKKLIINTCE  247 (286)
Q Consensus       187 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~----~~~i~~p~L~~L~ls~c~  247 (286)
                      ..+++|++|++.++.++.-. ......+++|++|+++++.--.    ...-..++|+.|+++++.
T Consensus       121 ~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          121 SGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             TTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            44899999999988665311 0224678999999999974211    111224789999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.04  E-value=1.8e-05  Score=77.22  Aligned_cols=148  Identities=12%  Similarity=0.073  Sum_probs=80.4

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .+++.|++....   -....|..+..+++|++|+|+++.+... ......+++|++|+|+++.++.-.- ..+..+++|+
T Consensus       290 ~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~  365 (844)
T 3j0a_A          290 KDLKVLNLAYNK---INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD-QTFKFLEKLQ  365 (844)
T ss_dssp             CCCCEEEEESCC---CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS-SCSCSCCCCC
T ss_pred             CCCCEEECCCCc---CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh-hhhcCCCCCC
Confidence            578888888221   1122344556778888888888877442 2344568888888888777322111 1235578888


Q ss_pred             eEEeeeccccceeecccCCceEEec--------------------CcccChhhHHHHHhcCCCccEEecccccCcc----
Q 042585          174 HLEFVRYNNLVNVSSCKNLKHLDLC--------------------DGSYTDEWLNSQISGLPLLEQLHISLCNNIE----  229 (286)
Q Consensus       174 ~L~l~~c~~~~~~~~~~~L~~L~l~--------------------~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~----  229 (286)
                      .|+++++.. ..+..+++|+.|.+.                    ++.+++-........+|+|++|+++++....    
T Consensus       366 ~L~Ls~N~l-~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  444 (844)
T 3j0a_A          366 TLDLRDNAL-TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD  444 (844)
T ss_dssp             EEEEETCCS-CCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS
T ss_pred             EEECCCCCC-CcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccc
Confidence            888876532 122224444444444                    3333321111334477888888877763221    


Q ss_pred             ccccccccccEEEeeccc
Q 042585          230 SITISSLRLKKLIINTCE  247 (286)
Q Consensus       230 ~~~i~~p~L~~L~ls~c~  247 (286)
                      ......++|+.|+++++.
T Consensus       445 ~~~~~~~~L~~L~Ls~N~  462 (844)
T 3j0a_A          445 QTPSENPSLEQLFLGENM  462 (844)
T ss_dssp             SSSCSCTTCCBCEEESCC
T ss_pred             cccccCCccccccCCCCc
Confidence            011113556666666553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.99  E-value=1.6e-05  Score=74.81  Aligned_cols=33  Identities=18%  Similarity=0.142  Sum_probs=15.4

Q ss_pred             cCCccEEEEeceeeccCCcCcccCCCccEEEcceee
Q 042585          121 SKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY  156 (286)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~  156 (286)
                      .++|++|+|++|.+... +.  .+++|++|+|+++.
T Consensus        80 l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           80 PPELRTLEVSGNQLTSL-PV--LPPGLLELSIFSNP  112 (622)
T ss_dssp             CTTCCEEEECSCCCSCC-CC--CCTTCCEEEECSCC
T ss_pred             CCCCCEEEcCCCcCCcC-CC--CCCCCCEEECcCCc
Confidence            35555555555554321 11  34455555554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.96  E-value=5.6e-06  Score=65.95  Aligned_cols=111  Identities=20%  Similarity=0.179  Sum_probs=73.5

Q ss_pred             cCCCcchhccCCccEEEEeceeeccCCcC--cccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----e
Q 042585          112 NSLPQMVLRSKSIKVLTLQNYKLESLGND--DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----N  185 (286)
Q Consensus       112 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~  185 (286)
                      ..+|..+.  .+|+.|+++++.+....+.  ...+++|++|+|+++.++... ...+...++|+.|+++++....    .
T Consensus        21 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~   97 (192)
T 1w8a_A           21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHHH
Confidence            34554443  3889999999887543232  557899999999988844321 1224568899999998765431    1


Q ss_pred             eecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          186 VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       186 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      +..+++|+.|+++++.++.-.. ......++|++|+++++.
T Consensus        98 ~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           98 FLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCC
T ss_pred             hcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCC
Confidence            3337889999998876653211 233567889999888854

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.95  E-value=6e-06  Score=73.95  Aligned_cols=42  Identities=26%  Similarity=0.426  Sum_probs=38.5

Q ss_pred             ccCCCcccCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhh
Q 042585            9 KKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQA   50 (286)
Q Consensus         9 ~~~~~~d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~l   50 (286)
                      ++....|.|+.||+|++.+||+||+.+++++++.|||+|+.+
T Consensus        11 ~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             CccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            455578999999999999999999999999999999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.95  E-value=6.3e-06  Score=65.77  Aligned_cols=102  Identities=16%  Similarity=0.121  Sum_probs=61.8

Q ss_pred             CCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEEe
Q 042585          122 KSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDL  197 (286)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l  197 (286)
                      ++|++|+++++.+.........+++|++|+|+++.++.-.- ..+..+++|+.|+++++...    ..+..+++|+.|++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            57788888877775433344567788888888777432111 12345777888888765432    12333677888888


Q ss_pred             cCcccChhhHHHHHhcCCCccEEecccc
Q 042585          198 CDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       198 ~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      .++.++.-. ......+++|++|++.++
T Consensus       110 ~~N~l~~~~-~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          110 HGNDISVVP-EGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CSSCCCBCC-TTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCeeC-hhhhhcCccccEEEeCCC
Confidence            776554211 022345677788877774

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.94  E-value=6.5e-06  Score=76.76  Aligned_cols=102  Identities=21%  Similarity=0.188  Sum_probs=65.0

Q ss_pred             CCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEEecC
Q 042585          122 KSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLDLCD  199 (286)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~l~~  199 (286)
                      ..|+.|+|+++.+... +....+++|+.|+|+++.++  .+..-+..+++|+.|+++++...  ..+..+++|+.|++++
T Consensus       441 ~~L~~L~Ls~n~l~~l-p~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN  517 (567)
T ss_dssp             TTCSEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred             cCceEEEecCCCCCCC-cCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCC
Confidence            3577888888777543 34666888888888887744  22223556788888888765322  2233377888888887


Q ss_pred             cccChhhHHHHHhcCCCccEEeccccc
Q 042585          200 GSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       200 ~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      +.++.-........+++|+.|+++++.
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            765532101334567788888887764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.90  E-value=9.7e-06  Score=63.46  Aligned_cols=103  Identities=22%  Similarity=0.178  Sum_probs=63.2

Q ss_pred             CCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCCceEE
Q 042585          122 KSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNLKHLD  196 (286)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L~~L~  196 (286)
                      ++|++|+++++.+....+. ...+++|++|+|+++.++.-. ...+..+++|+.|+++++....    .+..+++|+.|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            6788888888777443232 345788888888887743211 1223567888888887664321    122367788888


Q ss_pred             ecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          197 LCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      +.++.++.-. ..+...+++|++|+++++.
T Consensus       107 l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          107 LDTNQLKSVP-DGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCSSCCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CcCCcceEeC-HHHhcCCcccCEEEecCCC
Confidence            8776554211 1223456778888777754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.89  E-value=1.6e-05  Score=74.03  Aligned_cols=55  Identities=29%  Similarity=0.301  Sum_probs=32.3

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeee
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYA  157 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~  157 (286)
                      ..+++.|++....    -..+|..+  .++|+.|+|+++.+... +  ..+++|++|+|+++.+
T Consensus        58 ~~~L~~L~Ls~n~----L~~lp~~l--~~~L~~L~Ls~N~l~~i-p--~~l~~L~~L~Ls~N~l  112 (571)
T 3cvr_A           58 INQFSELQLNRLN----LSSLPDNL--PPQITVLEITQNALISL-P--ELPASLEYLDACDNRL  112 (571)
T ss_dssp             HTTCSEEECCSSC----CSCCCSCC--CTTCSEEECCSSCCSCC-C--CCCTTCCEEECCSSCC
T ss_pred             cCCccEEEeCCCC----CCccCHhH--cCCCCEEECcCCCCccc-c--cccCCCCEEEccCCCC
Confidence            3578888887211    11255444  26677777777766432 2  3466777777776653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.89  E-value=1.7e-05  Score=71.89  Aligned_cols=98  Identities=14%  Similarity=0.180  Sum_probs=44.6

Q ss_pred             hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccceeec-ccCCceEE
Q 042585          118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSS-CKNLKHLD  196 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~-~~~L~~L~  196 (286)
                      +..+++|++|+++++.+... +  ...++|++|+++++.++.  +.. +..+++|+.|+++++... .+.. .++|+.|+
T Consensus       149 ~~~l~~L~~L~l~~N~l~~l-p--~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~  221 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKL-P--DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESIV  221 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCC-C--CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCS-SCCCCCTTCCEEE
T ss_pred             cCCCCCCCEEECCCCcCccc-C--CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEEECCCCcCC-cCCCCcCcccEEE
Confidence            55566666666666655331 1  123456666666555322  111 344566666666554321 1111 33455555


Q ss_pred             ecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          197 LCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      +.++.++.  +.. ...+++|++|+++++
T Consensus       222 l~~n~l~~--lp~-~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          222 AGNNILEE--LPE-LQNLPFLTTIYADNN  247 (454)
T ss_dssp             CCSSCCSS--CCC-CTTCTTCCEEECCSS
T ss_pred             CcCCcCCc--ccc-cCCCCCCCEEECCCC
Confidence            55443331  001 224445555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.89  E-value=5.8e-06  Score=72.58  Aligned_cols=145  Identities=19%  Similarity=0.178  Sum_probs=89.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcc-hh-ccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCC
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQM-VL-RSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPL  171 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~-~~-~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~  171 (286)
                      ..++.|+++...    -..++.. +. .+++|+.|+|+++.+....+ ....+++|++|+|+++.++.-. ...+..+++
T Consensus        39 ~~l~~L~Ls~N~----l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~  113 (361)
T 2xot_A           39 SYTALLDLSHNN----LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQA  113 (361)
T ss_dssp             TTCSEEECCSSC----CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTT
T ss_pred             CCCCEEECCCCC----CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC-HHHhCCCcC
Confidence            457788887211    1223332 33 67899999999988754322 3556899999999998843211 122456899


Q ss_pred             cceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHH---hcCCCccEEecccccCccccccc----ccc--c
Q 042585          172 LQHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQI---SGLPLLEQLHISLCNNIESITIS----SLR--L  238 (286)
Q Consensus       172 Le~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~---~~~p~L~~L~l~~c~~~~~~~i~----~p~--L  238 (286)
                      |+.|+++++...    ..+..+++|+.|+++++.++.-.. .+.   ..+++|+.|+++++. ++.+...    .+.  +
T Consensus       114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l  191 (361)
T 2xot_A          114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVK  191 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHH
T ss_pred             CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhc
Confidence            999999877543    123338899999999876653111 111   468899999998863 2222211    132  4


Q ss_pred             cEEEeecc
Q 042585          239 KKLIINTC  246 (286)
Q Consensus       239 ~~L~ls~c  246 (286)
                      +.|++++.
T Consensus       192 ~~l~l~~N  199 (361)
T 2xot_A          192 NGLYLHNN  199 (361)
T ss_dssp             TTEECCSS
T ss_pred             ceEEecCC
Confidence            66777664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.79  E-value=2.8e-05  Score=70.49  Aligned_cols=9  Identities=11%  Similarity=0.320  Sum_probs=5.1

Q ss_pred             CCceEEEEE
Q 042585           95 RNVEELEVE  103 (286)
Q Consensus        95 ~~l~~L~l~  103 (286)
                      .++++++++
T Consensus       153 ~~L~~L~l~  161 (454)
T 1jl5_A          153 SFLKIIDVD  161 (454)
T ss_dssp             TTCCEEECC
T ss_pred             CCCCEEECC
Confidence            355666665

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.79  E-value=5.1e-06  Score=74.32  Aligned_cols=41  Identities=32%  Similarity=0.437  Sum_probs=37.1

Q ss_pred             cCCCcccCCCCCHH----HHHHHHccCChhhHHHhhhhhhhhHhh
Q 042585           10 KNHNVDRISALPQP----ILQLIMSFLPFKQVVQICMVSKVWLQA   50 (286)
Q Consensus        10 ~~~~~d~i~~LPde----il~~Ils~L~~~d~~~~~~vskrW~~l   50 (286)
                      ++-..|.|+.||+|    ++.+||+||+.++++++++|||+|+++
T Consensus         4 ~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            4 IMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             CCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             hhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            34467899999999    999999999999999999999999853

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.71  E-value=5.4e-06  Score=79.58  Aligned_cols=106  Identities=18%  Similarity=0.141  Sum_probs=51.3

Q ss_pred             cchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc---ceeecccCC
Q 042585          116 QMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL---VNVSSCKNL  192 (286)
Q Consensus       116 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~~~~~L  192 (286)
                      ..+..+++|+.|+|+++.+.........+++|++|+|+++.++  .+..-+..+++|+.|+|+++...   ..+..+++|
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL  295 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence            3344556666666666555333233445666666666666533  11122345666666666654322   112225666


Q ss_pred             ceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          193 KHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       193 ~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      +.|++.++.++.  +-.-...+++|++|+++++
T Consensus       296 ~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          296 KYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SEEECCSSCCCC--CCSSTTSCTTCCCEECTTS
T ss_pred             CEEECCCCCCCc--cChhhhcCCCccEEeCCCC
Confidence            666666554431  1011345566666666664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.70  E-value=1.8e-05  Score=62.93  Aligned_cols=122  Identities=17%  Similarity=0.123  Sum_probs=82.0

Q ss_pred             cEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEEecCc
Q 042585          125 KVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLCDG  200 (286)
Q Consensus       125 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~~~  200 (286)
                      +.+++++..+... |. .-.++|++|+|.++.++.-.-...+..+++|+.|+++++...    ..+..+++|+.|+++++
T Consensus        11 ~~l~~s~~~l~~i-p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEI-PR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSC-CS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcC-cc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            6778887777443 21 224589999999998543222223567999999999987543    22334899999999988


Q ss_pred             ccChhhHHHHHhcCCCccEEecccccCccc--ccc-ccccccEEEeecccCC
Q 042585          201 SYTDEWLNSQISGLPLLEQLHISLCNNIES--ITI-SSLRLKKLIINTCESN  249 (286)
Q Consensus       201 ~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~--~~i-~~p~L~~L~ls~c~~~  249 (286)
                      .++.-.. .....+++|++|+++++.--..  -.+ ..++|+.|++++....
T Consensus        89 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECS-SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCH-HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            7664211 2245789999999999743221  112 2478999999887544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.70  E-value=3.5e-05  Score=60.24  Aligned_cols=121  Identities=16%  Similarity=0.124  Sum_probs=80.5

Q ss_pred             ccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCCceEEecC
Q 042585          124 IKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNLKHLDLCD  199 (286)
Q Consensus       124 L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L~~L~l~~  199 (286)
                      .+.+++++..+... + ....++|++|++.++.++.-. ...+..+++|+.|+++++....    .+..+++|+.|++.+
T Consensus         9 ~~~l~~~~~~l~~~-p-~~~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV-P-TGIPSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSC-C-TTCCTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccC-C-CCCCCCCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            35677766666442 2 233689999999998844211 1234678999999999774331    133489999999998


Q ss_pred             cccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeecccCC
Q 042585          200 GSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINTCESN  249 (286)
Q Consensus       200 ~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~c~~~  249 (286)
                      +.++.-. ......+++|++|+++++. ++.+.   + ..++|+.|+++++...
T Consensus        86 N~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 NKLQSLP-NGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SCCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccccC-HHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence            8766321 1234578999999999973 22222   1 2478999999987543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.67  E-value=4.4e-05  Score=71.11  Aligned_cols=110  Identities=19%  Similarity=0.143  Sum_probs=57.8

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .+++.|+++...    -..+|   ..+++|+.|+|+++.+... +..  ..+|++|+|+++.++.  +..   .+++|+.
T Consensus        80 ~~L~~L~Ls~N~----l~~ip---~~l~~L~~L~Ls~N~l~~i-p~l--~~~L~~L~Ls~N~l~~--lp~---~l~~L~~  144 (571)
T 3cvr_A           80 PQITVLEITQNA----LISLP---ELPASLEYLDACDNRLSTL-PEL--PASLKHLDVDNNQLTM--LPE---LPALLEY  144 (571)
T ss_dssp             TTCSEEECCSSC----CSCCC---CCCTTCCEEECCSSCCSCC-CCC--CTTCCEEECCSSCCSC--CCC---CCTTCCE
T ss_pred             CCCCEEECcCCC----Ccccc---cccCCCCEEEccCCCCCCc-chh--hcCCCEEECCCCcCCC--CCC---cCccccE
Confidence            467777777211    11344   2356777777777766442 221  1267777777766332  111   4666777


Q ss_pred             EEeeeccccceeec-ccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          175 LEFVRYNNLVNVSS-CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       175 L~l~~c~~~~~~~~-~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      |+++++... .+.. +++|+.|+++++.++.-.  .  . .++|++|+++++
T Consensus       145 L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~L~~lp--~--l-~~~L~~L~Ls~N  190 (571)
T 3cvr_A          145 INADNNQLT-MLPELPTSLEVLSVRNNQLTFLP--E--L-PESLEALDVSTN  190 (571)
T ss_dssp             EECCSSCCS-CCCCCCTTCCEEECCSSCCSCCC--C--C-CTTCCEEECCSS
T ss_pred             EeCCCCccC-cCCCcCCCcCEEECCCCCCCCcc--h--h-hCCCCEEECcCC
Confidence            777655322 1222 556666666665544310  1  1 156666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.65  E-value=4.7e-05  Score=60.64  Aligned_cols=118  Identities=15%  Similarity=0.043  Sum_probs=80.0

Q ss_pred             cEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEEecCc
Q 042585          125 KVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLCDG  200 (286)
Q Consensus       125 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~~~  200 (286)
                      +.+++++..+... | ..-.++|++|+|.++.++.  +...+..+++|+.|+++++...    ..+..+++|++|+++++
T Consensus        13 ~~l~~~~~~l~~i-p-~~~~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-P-KGIPRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSC-C-SCCCTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcC-C-CCCCCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            5667777666442 2 1235789999999998542  2234577999999999977543    12344899999999988


Q ss_pred             ccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeecccC
Q 042585          201 SYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINTCES  248 (286)
Q Consensus       201 ~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~c~~  248 (286)
                      .++.-.. .....+++|++|+++++.- +.+.   + ..++|+.|++++.+.
T Consensus        89 ~l~~i~~-~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           89 RLRCIPP-RTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCBCCT-TTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCEeCH-HHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCe
Confidence            7654211 2345789999999999742 2221   2 247899999987543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.63  E-value=6.8e-06  Score=78.91  Aligned_cols=104  Identities=16%  Similarity=0.141  Sum_probs=78.9

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      ..++.|+|+..    .-..+|..++.+++|++|+|+++.+.........+++|++|+|+++.++  .+..-+..+++|+.
T Consensus       224 ~~L~~L~Ls~n----~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          224 QLWHALDLSNL----QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKY  297 (727)
T ss_dssp             CCCCEEECTTS----CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSE
T ss_pred             CCCcEEECCCC----CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCE
Confidence            56788888722    2237788888999999999999988654344667999999999999955  22333567999999


Q ss_pred             EEeeecccc---ceeecccCCceEEecCcccCh
Q 042585          175 LEFVRYNNL---VNVSSCKNLKHLDLCDGSYTD  204 (286)
Q Consensus       175 L~l~~c~~~---~~~~~~~~L~~L~l~~~~~~~  204 (286)
                      |+|+++...   ..+..+++|+.|+++++.++.
T Consensus       298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             EECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            999987432   223348999999999887764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.46  E-value=9.2e-05  Score=64.50  Aligned_cols=37  Identities=14%  Similarity=0.091  Sum_probs=18.6

Q ss_pred             CCccEEecccccCccccc---cccccccEEEeecccCCccc
Q 042585          215 PLLEQLHISLCNNIESIT---ISSLRLKKLIINTCESNTIF  252 (286)
Q Consensus       215 p~L~~L~l~~c~~~~~~~---i~~p~L~~L~ls~c~~~~~~  252 (286)
                      ..|+.|+++++. ++.+.   ...++|+.|.++++..++.+
T Consensus       154 ~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i  193 (350)
T 4ay9_X          154 FESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEEL  193 (350)
T ss_dssp             SSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCC
T ss_pred             hhhhhhcccccc-ccCCChhhccccchhHHhhccCCcccCC
Confidence            345556665532 12221   12356677777766655554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.09  E-value=0.00044  Score=53.96  Aligned_cols=79  Identities=18%  Similarity=0.186  Sum_probs=41.8

Q ss_pred             CCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc---c-eeecccCCceEE
Q 042585          122 KSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL---V-NVSSCKNLKHLD  196 (286)
Q Consensus       122 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~---~-~~~~~~~L~~L~  196 (286)
                      ++|+.|+|+++.+....+ ....+++|++|+|+++.++.-. ..++..+++|+.|+++++...   . .+..+++|+.|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            667777777766644322 2345677777777776633210 112344666666666654322   1 122256666666


Q ss_pred             ecCcc
Q 042585          197 LCDGS  201 (286)
Q Consensus       197 l~~~~  201 (286)
                      +.++.
T Consensus       112 L~~N~  116 (174)
T 2r9u_A          112 LYNNP  116 (174)
T ss_dssp             CCSSC
T ss_pred             eCCCC
Confidence            66544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.08  E-value=0.0004  Score=53.88  Aligned_cols=87  Identities=20%  Similarity=0.230  Sum_probs=51.0

Q ss_pred             CCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc---c-eee
Q 042585          113 SLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL---V-NVS  187 (286)
Q Consensus       113 ~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~---~-~~~  187 (286)
                      .+|..+  .++|+.|+|+++.+....+ ....+++|++|+|+++.++.-. ...+..+++|+.|+++++...   . .+.
T Consensus        23 ~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~   99 (170)
T 3g39_A           23 SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSIPRGAFD   99 (170)
T ss_dssp             SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEeCHHHhc
Confidence            344433  2677888888877744322 3445778888888877743211 122355777777777765332   1 122


Q ss_pred             cccCCceEEecCccc
Q 042585          188 SCKNLKHLDLCDGSY  202 (286)
Q Consensus       188 ~~~~L~~L~l~~~~~  202 (286)
                      .+++|+.|++.++.+
T Consensus       100 ~l~~L~~L~L~~N~~  114 (170)
T 3g39_A          100 NLKSLTHIWLLNNPW  114 (170)
T ss_dssp             TCTTCCEEECCSSCB
T ss_pred             CCCCCCEEEeCCCCC
Confidence            367777777776544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.06  E-value=0.00026  Score=54.95  Aligned_cols=100  Identities=15%  Similarity=0.062  Sum_probs=67.7

Q ss_pred             CccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEEec
Q 042585          123 SIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLC  198 (286)
Q Consensus       123 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~  198 (286)
                      ..+.++++++.+... |. .-.++|++|+|+++.++.-. ...+..+++|+.|+++++...    ..+..+++|+.|+++
T Consensus        10 ~~~~l~~s~n~l~~i-p~-~~~~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASV-PT-GIPTTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSC-CS-CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCcc-Cc-cCCCCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            346788888777543 21 22588999999999844321 122456899999999976533    112338899999999


Q ss_pred             CcccChhhHHHHHhcCCCccEEeccccc
Q 042585          199 DGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       199 ~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      ++.++.-. ......+++|++|++++++
T Consensus        87 ~N~l~~~~-~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           87 DNQLKSIP-RGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence            88765311 1234578999999999853

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.02  E-value=0.0023  Score=54.96  Aligned_cols=34  Identities=9%  Similarity=0.103  Sum_probs=20.7

Q ss_pred             cCCccEEEEeceeecc-CCcCcccCCCccEEEccee
Q 042585          121 SKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDV  155 (286)
Q Consensus       121 ~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~  155 (286)
                      |++|++|.|.. .+.. ....+.+|++|++|+|.+.
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n  134 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK  134 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC
Confidence            68888888876 3322 1133456788888887655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.90  E-value=0.00078  Score=56.41  Aligned_cols=80  Identities=21%  Similarity=0.233  Sum_probs=42.7

Q ss_pred             cCCCccEEEcceeeeCh-HHHHHHHhcCCCcceEEeeecccc--ceeeccc--CCceEEecCcccCh------hhHHHHH
Q 042585          143 KLLSLRKLHLSDVYADD-QVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCK--NLKHLDLCDGSYTD------EWLNSQI  211 (286)
Q Consensus       143 ~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~--~L~~L~l~~~~~~~------~~l~~~~  211 (286)
                      .+|+|++|+|+++.++. ..+..++..+|+|+.|+|++....  ..+....  +|+.|.+.++.+..      .....+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            46667777777666332 233344455677777777644321  1222222  67777776655442      2223455


Q ss_pred             hcCCCccEEec
Q 042585          212 SGLPLLEQLHI  222 (286)
Q Consensus       212 ~~~p~L~~L~l  222 (286)
                      ..+|+|+.|+-
T Consensus       248 ~~~P~L~~LDg  258 (267)
T 3rw6_A          248 ERFPKLLRLDG  258 (267)
T ss_dssp             HHCTTCCEESS
T ss_pred             HHCcccCeECC
Confidence            66677776663

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.66  E-value=0.0039  Score=49.58  Aligned_cols=104  Identities=10%  Similarity=0.129  Sum_probs=64.3

Q ss_pred             cCCCccEEEccee-eeChHHHHHHHh---cCCCcceEEeeecccc----ceee----cccCCceEEecCcccChhhHHHH
Q 042585          143 KLLSLRKLHLSDV-YADDQVMNNLFA---QSPLLQHLEFVRYNNL----VNVS----SCKNLKHLDLCDGSYTDEWLNSQ  210 (286)
Q Consensus       143 ~~~~L~~L~L~~~-~~~~~~l~~l~~---~cp~Le~L~l~~c~~~----~~~~----~~~~L~~L~l~~~~~~~~~l~~~  210 (286)
                      .-+.|++|+|.++ .+++.+...++.   .-..|+.|+|++|...    ..++    .-.+|++|++..+.+++++...+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3566778888776 477776655543   3556888888766432    1111    16788888888888888766555


Q ss_pred             Hh---cCCCccEEeccccc--Cccccc---c-----ccccccEEEeecc
Q 042585          211 IS---GLPLLEQLHISLCN--NIESIT---I-----SSLRLKKLIINTC  246 (286)
Q Consensus       211 ~~---~~p~L~~L~l~~c~--~~~~~~---i-----~~p~L~~L~ls~c  246 (286)
                      ..   .-..|++|++.++.  .+.+.+   +     ..+.|..|+++.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            43   34558888887653  233221   1     1367777777643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.59  E-value=0.0014  Score=51.05  Aligned_cols=83  Identities=18%  Similarity=0.177  Sum_probs=58.9

Q ss_pred             CCceEEEEEeccCCCcccCC-CcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSL-PQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .++++|+++...    -..+ |..+...++|+.|+|+++.+....+. ...+++|++|+|+++.++.-. ...+..+++|
T Consensus        33 ~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNNQ----ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             CCCcEEEeCCCC----ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhccccCC
Confidence            578889988221    1233 45567889999999999988654333 357999999999999844211 1235568999


Q ss_pred             ceEEeeeccc
Q 042585          173 QHLEFVRYNN  182 (286)
Q Consensus       173 e~L~l~~c~~  182 (286)
                      +.|++.+..+
T Consensus       108 ~~L~L~~N~~  117 (174)
T 2r9u_A          108 THIYLYNNPW  117 (174)
T ss_dssp             SEEECCSSCB
T ss_pred             CEEEeCCCCc
Confidence            9999987643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.53  E-value=0.0036  Score=55.55  Aligned_cols=57  Identities=16%  Similarity=0.215  Sum_probs=27.8

Q ss_pred             hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEee
Q 042585          118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFV  178 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~  178 (286)
                      +..|++|+.+++..+.+.........+.+|+++.|....  +.+.+    +..|++|+.+++.
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~a----F~~~~~L~~l~l~  234 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQA----FLKTSQLKTIEIP  234 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTT----TTTCTTCCCEECC
T ss_pred             hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhH----hhCCCCCCEEecC
Confidence            345667777777654442221223334555555554322  33332    2346666666653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.45  E-value=0.0013  Score=57.12  Aligned_cols=59  Identities=12%  Similarity=0.149  Sum_probs=26.7

Q ss_pred             CCceEEEEEeccCCCcccCCCcc-hhccCCccEEEE-eceeeccCC-cCcccCCCccEEEcceee
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQM-VLRSKSIKVLTL-QNYKLESLG-NDDVKLLSLRKLHLSDVY  156 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~L-~~~~~~~~~-~~~~~~~~L~~L~L~~~~  156 (286)
                      .++++|+++...   ....+|.. +..+++++.+.. .++.+.... .....+++|++|++.++.
T Consensus        54 ~~L~~L~Ls~N~---i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~  115 (350)
T 4ay9_X           54 GDLEKIEISQND---VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG  115 (350)
T ss_dssp             TTCCEEEEECCT---TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred             CCCCEEECcCCC---CCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc
Confidence            567777777211   01122222 223445544333 333332211 223446667777766665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.44  E-value=0.0017  Score=55.76  Aligned_cols=73  Identities=21%  Similarity=0.220  Sum_probs=38.8

Q ss_pred             CCCccEEEcceee---eChHHHHHHHhcCCCcceEEeeeccc-c--ceeecccCCc-eEEecCc--ccChhhHHHHHhcC
Q 042585          144 LLSLRKLHLSDVY---ADDQVMNNLFAQSPLLQHLEFVRYNN-L--VNVSSCKNLK-HLDLCDG--SYTDEWLNSQISGL  214 (286)
Q Consensus       144 ~~~L~~L~L~~~~---~~~~~l~~l~~~cp~Le~L~l~~c~~-~--~~~~~~~~L~-~L~l~~~--~~~~~~l~~~~~~~  214 (286)
                      |++|++|+|.++.   +.+.+    +.+|++|++|++...-. +  ..|..|++|+ .+++.+.  .+.+    ....+|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~a----F~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~~l~~I~~----~aF~~c  296 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFT----FAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVTAIEF----GAFMGC  296 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTT----TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECTTCCEECT----TTTTTC
T ss_pred             cCCCeEEECCCCCcceecHhh----hhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcccceEEch----hhhhCC
Confidence            6667777776643   44333    34577777776654210 0  1222366676 6766541  1222    233567


Q ss_pred             CCccEEeccc
Q 042585          215 PLLEQLHISL  224 (286)
Q Consensus       215 p~L~~L~l~~  224 (286)
                      ++|+.+++.+
T Consensus       297 ~~L~~l~l~~  306 (329)
T 3sb4_A          297 DNLRYVLATG  306 (329)
T ss_dssp             TTEEEEEECS
T ss_pred             ccCCEEEeCC
Confidence            7777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.25  E-value=0.0029  Score=54.60  Aligned_cols=90  Identities=21%  Similarity=0.188  Sum_probs=62.6

Q ss_pred             ccCCCcchhccCCccEEEEec-eeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccceee-
Q 042585          111 WNSLPQMVLRSKSIKVLTLQN-YKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVS-  187 (286)
Q Consensus       111 ~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~-  187 (286)
                      -..+|. +....+|+.|+|++ +.+....+ ....+++|+.|+|+++.++.-. ...+..+++|+.|+|++.... .+. 
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~-~~~~   97 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALE-SLSW   97 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCS-CCCS
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccc-eeCH
Confidence            345777 77889999999996 77754323 3557999999999999844311 123467999999999976432 221 


Q ss_pred             ---cccCCceEEecCcccC
Q 042585          188 ---SCKNLKHLDLCDGSYT  203 (286)
Q Consensus       188 ---~~~~L~~L~l~~~~~~  203 (286)
                         ...+|+.|++.++.+.
T Consensus        98 ~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           98 KTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             TTTCSCCCCEEECCSSCCC
T ss_pred             HHcccCCceEEEeeCCCcc
Confidence               1234999999876544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.69  E-value=0.0076  Score=50.36  Aligned_cols=80  Identities=19%  Similarity=0.236  Sum_probs=42.9

Q ss_pred             CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCC--CccEEEcceeeeCh------HHHHHH
Q 042585           95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLL--SLRKLHLSDVYADD------QVMNNL  165 (286)
Q Consensus        95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~------~~l~~l  165 (286)
                      ..++.|+|+ +.-  ..-..+|..+..+++|+.|+|+++.+..+ .....+.  +|++|.|.++.+..      .-...+
T Consensus       170 ~~L~~L~Ls~N~l--~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          170 PELLSLNLSNNRL--YRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             TTCCEEECTTSCC--CCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCEEECCCCCC--CCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            467777776 211  01123444555677777777777666432 1122222  67777777766332      223345


Q ss_pred             HhcCCCcceEEe
Q 042585          166 FAQSPLLQHLEF  177 (286)
Q Consensus       166 ~~~cp~Le~L~l  177 (286)
                      ...+|+|+.|+=
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            566777776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.49  E-value=0.021  Score=45.35  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=11.8

Q ss_pred             CCccEEEcceeeeChHHHHHHHh
Q 042585          145 LSLRKLHLSDVYADDQVMNNLFA  167 (286)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~l~~  167 (286)
                      ..|++|+|.++.+++.+...+..
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CccCeEecCCCcCCHHHHHHHHH
Confidence            44555555555555555444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.93  E-value=0.022  Score=50.06  Aligned_cols=11  Identities=36%  Similarity=0.582  Sum_probs=5.2

Q ss_pred             hcCCCccEEec
Q 042585          212 SGLPLLEQLHI  222 (286)
Q Consensus       212 ~~~p~L~~L~l  222 (286)
                      .+|.+|+.+.+
T Consensus       331 ~~C~~L~~i~i  341 (394)
T 4gt6_A          331 AGCEQLERIAI  341 (394)
T ss_dssp             TTCTTCCEEEE
T ss_pred             hCCCCCCEEEE
Confidence            34444555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.52  E-value=0.044  Score=47.05  Aligned_cols=97  Identities=18%  Similarity=0.080  Sum_probs=60.5

Q ss_pred             EEEEece-eeccCCcCcccCCCccEEEcce-eeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEEecC
Q 042585          126 VLTLQNY-KLESLGNDDVKLLSLRKLHLSD-VYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLCD  199 (286)
Q Consensus       126 ~L~L~~~-~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~~  199 (286)
                      .+++++. .+...+. ...+++|++|+|++ +.++.-.- ..+..+++|+.|+|+++...    ..+..+++|++|++++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3455555 5644433 56688899999986 66432111 12456899999999976432    1233488999999998


Q ss_pred             cccChhhHHHHHhcCCCccEEeccccc
Q 042585          200 GSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       200 ~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      +.++.-. ..+.... .|+.|++.++.
T Consensus        90 N~l~~~~-~~~~~~~-~L~~l~l~~N~  114 (347)
T 2ifg_A           90 NALESLS-WKTVQGL-SLQELVLSGNP  114 (347)
T ss_dssp             SCCSCCC-STTTCSC-CCCEEECCSSC
T ss_pred             CccceeC-HHHcccC-CceEEEeeCCC
Confidence            7665311 0112223 39999988853

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.59  E-value=0.077  Score=46.57  Aligned_cols=100  Identities=12%  Similarity=0.168  Sum_probs=68.0

Q ss_pred             hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEeeec-ccc--ceeecccCC
Q 042585          118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFVRY-NNL--VNVSSCKNL  192 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c-~~~--~~~~~~~~L  192 (286)
                      +..|.+|+.+.+.............+|++|+.+.+....  +.+.+    +.+|++|+++++... ..+  ..|..|.+|
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEGITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred             eeecccccEEecccccceecCcccccccccccccCCCcccccCcee----ecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence            447899999988663322211445679999999997533  66654    467999999999642 111  234448999


Q ss_pred             ceEEecCc--ccChhhHHHHHhcCCCccEEecccc
Q 042585          193 KHLDLCDG--SYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       193 ~~L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      +.+.+-..  .+.+    ....+|++|+.+.+.+.
T Consensus       337 ~~i~ip~sv~~I~~----~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          337 ERIAIPSSVTKIPE----SAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CEEEECTTCCBCCG----GGGTTCTTCCEEEESSC
T ss_pred             CEEEECcccCEEhH----hHhhCCCCCCEEEECCc
Confidence            99999532  3444    33578999999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=92.27  E-value=0.25  Score=43.62  Aligned_cols=121  Identities=12%  Similarity=0.121  Sum_probs=74.9

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChH----HHHHHHhcCC
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQ----VMNNLFAQSP  170 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~l~~l~~~cp  170 (286)
                      .+++++++.     ..-..++..++...+|+.+.+...........+.+|++|+++.+.+......    .-...+.+|+
T Consensus       226 ~~L~~l~l~-----~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~  300 (401)
T 4fdw_A          226 SQLKTIEIP-----ENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP  300 (401)
T ss_dssp             TTCCCEECC-----TTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred             CCCCEEecC-----CCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence            467777775     1223445556666789999996532211114556799999999977542100    0112356799


Q ss_pred             CcceEEeeeccc-c--ceeecccCCceEEecCc--ccChhhHHHHHhcCCCccEEecccc
Q 042585          171 LLQHLEFVRYNN-L--VNVSSCKNLKHLDLCDG--SYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       171 ~Le~L~l~~c~~-~--~~~~~~~~L~~L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      +|+.+.+...-. +  ..|..|++|+.+.+...  .+..    ....+| +|+.+.+.+.
T Consensus       301 ~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~----~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          301 KLARFEIPESIRILGQGLLGGNRKVTQLTIPANVTQINF----SAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TCCEECCCTTCCEECTTTTTTCCSCCEEEECTTCCEECT----TSSSSS-CCCEEEECCS
T ss_pred             cCCeEEeCCceEEEhhhhhcCCCCccEEEECccccEEcH----HhCCCC-CCCEEEEcCC
Confidence            999999974211 1  22333899999999643  2333    234577 9999999885

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.76  E-value=0.18  Score=44.16  Aligned_cols=118  Identities=19%  Similarity=0.270  Sum_probs=74.9

Q ss_pred             hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccc-c--ceeecccCCce
Q 042585          118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNN-L--VNVSSCKNLKH  194 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~-~--~~~~~~~~L~~  194 (286)
                      +..|..|+.+.+..............++.|+.+.+....+.+..    ...|++|+.+.+...-. +  ..|..|.+|+.
T Consensus       249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~----F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKT----FYGCSSLTEVKLLDSVKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTT----TTTCTTCCEEEECTTCCEECTTTTTTCTTCCE
T ss_pred             ccccccceeEEcCCCcceeeccccccccccceeccCceeecccc----ccccccccccccccccceechhhhcCCCCCCE
Confidence            45788899988876433221144556888888888776655433    45689999998864211 1  22334888999


Q ss_pred             EEecCc--ccChhhHHHHHhcCCCccEEecccccCcccccc----ccccccEEEeec
Q 042585          195 LDLCDG--SYTDEWLNSQISGLPLLEQLHISLCNNIESITI----SSLRLKKLIINT  245 (286)
Q Consensus       195 L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i----~~p~L~~L~ls~  245 (286)
                      +++...  .+.+    ....+|.+|+.+.+...  ++.++-    .+++|+.+.+..
T Consensus       325 i~lp~~v~~I~~----~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          325 IDLPYLVEEIGK----RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             ECCCTTCCEECT----TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred             EEeCCcccEEhH----HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence            988532  2433    23468899999988652  444432    257888888764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=90.77  E-value=0.58  Score=40.85  Aligned_cols=118  Identities=12%  Similarity=0.122  Sum_probs=68.8

Q ss_pred             chhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEeeecccc-ceeecccCCc
Q 042585          117 MVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFVRYNNL-VNVSSCKNLK  193 (286)
Q Consensus       117 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c~~~-~~~~~~~~L~  193 (286)
                      ..+.+.+|+.+.+..............+++|+.+.+....  +....    ...|+.|+.+........ ..+..+.+|+
T Consensus       225 ~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~----F~~~~~l~~~~~~~~~i~~~~F~~~~~L~  300 (394)
T 4fs7_A          225 FALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSL----FYNCSGLKKVIYGSVIVPEKTFYGCSSLT  300 (394)
T ss_dssp             TTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCT----TTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred             hhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccc----cccccccceeccCceeecccccccccccc
Confidence            3456778888888653221111345568889988887554  44433    356888888876532111 2233388899


Q ss_pred             eEEecCc--ccChhhHHHHHhcCCCccEEecccccCccccccc----cccccEEEee
Q 042585          194 HLDLCDG--SYTDEWLNSQISGLPLLEQLHISLCNNIESITIS----SLRLKKLIIN  244 (286)
Q Consensus       194 ~L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~----~p~L~~L~ls  244 (286)
                      .+.+...  .+.+    ....+|.+|+.+.+..  .++.++-.    +.+|+.+.+.
T Consensus       301 ~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp  351 (394)
T 4fs7_A          301 EVKLLDSVKFIGE----EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP  351 (394)
T ss_dssp             EEEECTTCCEECT----TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred             ccccccccceech----hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence            8888643  2333    2346788898888753  23333222    3566666653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.40  E-value=0.57  Score=40.53  Aligned_cols=96  Identities=13%  Similarity=0.143  Sum_probs=51.4

Q ss_pred             ccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEeeecccc---ceeecccCCce
Q 042585          120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFVRYNNL---VNVSSCKNLKH  194 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~~~~~L~~  194 (286)
                      .+.+|+.+.+..............+.+|+.+.+....  +++..    ...|.+|+.+.+...-..   ..+..|++|+.
T Consensus       215 ~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~a----F~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          215 YGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGSFL----LQNCTALKTLNFYAKVKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEECTTT----TTTCTTCCEEEECCCCSEECTTTTTTCTTCCE
T ss_pred             cccccceeeeccceeEEccccccCCccceEEEcCCCccEeCccc----cceeehhccccccccceecccccccccccccc
Confidence            4455666555432111111234456777777775432  44433    345777777777532111   12233788888


Q ss_pred             EEecCcc---cChhhHHHHHhcCCCccEEecc
Q 042585          195 LDLCDGS---YTDEWLNSQISGLPLLEQLHIS  223 (286)
Q Consensus       195 L~l~~~~---~~~~~l~~~~~~~p~L~~L~l~  223 (286)
                      +.+.+..   +.+    ....+|++|+.+.+.
T Consensus       291 i~l~~~~i~~I~~----~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          291 VVMDNSAIETLEP----RVFMDCVKLSSVTLP  318 (379)
T ss_dssp             EEECCTTCCEECT----TTTTTCTTCCEEECC
T ss_pred             ccccccccceehh----hhhcCCCCCCEEEcC
Confidence            8886543   333    234677888888774

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=86.24  E-value=0.57  Score=40.51  Aligned_cols=98  Identities=9%  Similarity=0.017  Sum_probs=63.1

Q ss_pred             hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEeeeccc--c--ceeecccC
Q 042585          118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFVRYNN--L--VNVSSCKN  191 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c~~--~--~~~~~~~~  191 (286)
                      +..|.+|+.+.+..............+.+|+.+.+....  ++...    ...|++|+.+.+.+..-  +  ..|..|.+
T Consensus       236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~a----F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLL----CSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTT----TTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             ccCCccceEEEcCCCccEeCccccceeehhccccccccceeccccc----cccccccccccccccccceehhhhhcCCCC
Confidence            457889999988663211111345568899999986543  55443    46799999999975421  1  23444899


Q ss_pred             CceEEecCc--ccChhhHHHHHhcCCCccEEecc
Q 042585          192 LKHLDLCDG--SYTDEWLNSQISGLPLLEQLHIS  223 (286)
Q Consensus       192 L~~L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~  223 (286)
                      |+.+++-..  .+.+.    ...+|.+|+.+.+.
T Consensus       312 L~~i~lp~~l~~I~~~----aF~~C~~L~~i~ip  341 (379)
T 4h09_A          312 LSSVTLPTALKTIQVY----AFKNCKALSTISYP  341 (379)
T ss_dssp             CCEEECCTTCCEECTT----TTTTCTTCCCCCCC
T ss_pred             CCEEEcCccccEEHHH----HhhCCCCCCEEEEC
Confidence            999999532  34442    23577777777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	6e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.001

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 6e-05
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 5  MCRLKKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWH 52
          M  ++     D IS LP+ +   ++SFL  K ++Q     + W     
Sbjct: 7  MQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE 54

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 15 DRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFPDL 57
          D I++LP  I   I ++L F+ ++    VS+ W +       L
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.41
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.25
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.92
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.89
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.71
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.6
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.56
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.53
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.48
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.43
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.35
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.31
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.3
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.21
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.17
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.11
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.09
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.06
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.81
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.63
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.43
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.4
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.07
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.7
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.56
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.26
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.86

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.7e-18  Score=141.93  Aligned_cols=161  Identities=16%  Similarity=0.203  Sum_probs=127.4

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceee-eChHHHHHHHhcCCCc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLL  172 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~L  172 (286)
                      .+++++++++..  .....++..+..|++|++|+|++|.+.. .......+++|++|+|++|. +++.++..++.+||+|
T Consensus        46 ~~L~~LdLs~~~--i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNSV--IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTCE--ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCc--cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            467888887221  1233344556789999999999998733 22334568999999999998 9999999999999999


Q ss_pred             ceEEeeeccccce------eec-ccCCceEEecCc--ccChhhHHHHHhcCCCccEEecccccCccccccc----ccccc
Q 042585          173 QHLEFVRYNNLVN------VSS-CKNLKHLDLCDG--SYTDEWLNSQISGLPLLEQLHISLCNNIESITIS----SLRLK  239 (286)
Q Consensus       173 e~L~l~~c~~~~~------~~~-~~~L~~L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~----~p~L~  239 (286)
                      ++|++++|....+      +.. +++|++|++.++  .+++.++..+..+||+|++|++++|..+++..+.    .|+|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            9999999976522      111 689999999976  4778888888899999999999999888766544    48999


Q ss_pred             EEEeecccCCcccccccc
Q 042585          240 KLIINTCESNTIFSFGSI  257 (286)
Q Consensus       240 ~L~ls~c~~~~~~~~~~~  257 (286)
                      +|++++|..+++.++..+
T Consensus       204 ~L~L~~C~~i~~~~l~~L  221 (284)
T d2astb2         204 HLSLSRCYDIIPETLLEL  221 (284)
T ss_dssp             EEECTTCTTCCGGGGGGG
T ss_pred             EEECCCCCCCChHHHHHH
Confidence            999999999988766554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.6e-13  Score=114.03  Aligned_cols=139  Identities=19%  Similarity=0.218  Sum_probs=107.8

Q ss_pred             hccCCccEEEEeceeecc--CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccccee-----ec-cc
Q 042585          119 LRSKSIKVLTLQNYKLES--LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNV-----SS-CK  190 (286)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~-----~~-~~  190 (286)
                      ....+|++|++++|.+..  ......+|++|++|+|.+|.+++..+..+ ..||+|++|++++|...++.     .. +|
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHH
Confidence            345689999999988733  22345679999999999999999888875 46999999999999776432     12 89


Q ss_pred             CCceEEecCc-ccChhhHHH-HHhcCCCccEEeccccc-Ccccccc-----ccccccEEEeecccCCccccccccc
Q 042585          191 NLKHLDLCDG-SYTDEWLNS-QISGLPLLEQLHISLCN-NIESITI-----SSLRLKKLIINTCESNTIFSFGSIA  258 (286)
Q Consensus       191 ~L~~L~l~~~-~~~~~~l~~-~~~~~p~L~~L~l~~c~-~~~~~~i-----~~p~L~~L~ls~c~~~~~~~~~~~~  258 (286)
                      +|++|++++| .++++.+.. +...+++|+.|++.+|. .+++.++     .+|+|++|++++|..+++..+..+.
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~  197 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  197 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc
Confidence            9999999987 477766644 44567899999999974 4554433     3599999999999998877665543

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.2e-12  Score=74.84  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=33.6

Q ss_pred             CCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhc
Q 042585           17 ISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWH   52 (286)
Q Consensus        17 i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~   52 (286)
                      ++.||+|++.+||+|||.+|+++++.|||+|+++..
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999998654

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.8e-10  Score=78.81  Aligned_cols=43  Identities=26%  Similarity=0.388  Sum_probs=39.4

Q ss_pred             ccCCCcccCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhh
Q 042585            9 KKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAW   51 (286)
Q Consensus         9 ~~~~~~d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw   51 (286)
                      ++.-..|.|+.||+||+.+||+||+++|+++++.|||+|+.+.
T Consensus        11 ~p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             CchhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4555789999999999999999999999999999999999853

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=1.6e-10  Score=81.01  Aligned_cols=42  Identities=26%  Similarity=0.409  Sum_probs=37.7

Q ss_pred             cccCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhccCC
Q 042585           14 VDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFP   55 (286)
Q Consensus        14 ~d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~~~   55 (286)
                      .|.|+.||+|++.+||+||+.+|++++++|||+|+++...-+
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~   44 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKST   44 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCS
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH
Confidence            588999999999999999999999999999999998654433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=3.2e-08  Score=77.71  Aligned_cols=144  Identities=20%  Similarity=0.254  Sum_probs=102.7

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++|++....    -..++ .+..+++|++|+++++.+... +...++++|++|.+.++.+..-.  . +.+++.|+.
T Consensus        40 ~~l~~L~l~~~~----i~~l~-~l~~l~nL~~L~Ls~N~l~~~-~~l~~l~~L~~L~l~~n~~~~~~--~-l~~l~~L~~  110 (199)
T d2omxa2          40 DQVTTLQADRLG----IKSID-GVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTG  110 (199)
T ss_dssp             TTCCEEECTTSC----CCCCT-TGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSE
T ss_pred             cCCCEEECCCCC----CCCcc-ccccCCCcCcCccccccccCc-ccccCCccccccccccccccccc--c-ccccccccc
Confidence            688888887221    11232 456789999999999988554 34667999999999998833211  1 567999999


Q ss_pred             EEeeeccccc--eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc-cc-cccccEEEeecccCCc
Q 042585          175 LEFVRYNNLV--NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT-IS-SLRLKKLIINTCESNT  250 (286)
Q Consensus       175 L~l~~c~~~~--~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~-i~-~p~L~~L~ls~c~~~~  250 (286)
                      |++.++....  .+..+++|+.|+++++.+..-   .....+++|++|++.+|. ++++. +. .++|+.|++++++ ++
T Consensus       111 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~~~~L~~L~l~~n~-l~~l~~l~~l~~L~~L~ls~N~-i~  185 (199)
T d2omxa2         111 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI---SALSGLTSLQQLNFSSNQ-VTDLKPLANLTTLERLDISSNK-VS  185 (199)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CC
T ss_pred             ccccccccccccccchhhhhHHhhhhhhhhccc---cccccccccccccccccc-ccCCccccCCCCCCEEECCCCC-CC
Confidence            9999775542  233389999999998876542   235689999999999974 33332 32 4899999999984 55


Q ss_pred             cc
Q 042585          251 IF  252 (286)
Q Consensus       251 ~~  252 (286)
                      .+
T Consensus       186 ~i  187 (199)
T d2omxa2         186 DI  187 (199)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.71  E-value=3.8e-08  Score=77.99  Aligned_cols=143  Identities=17%  Similarity=0.188  Sum_probs=101.8

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      ..++++++....    -..++ .+..+++|++|+++++.+... +....+++|++|+++++.+++  +.. ...+|+|+.
T Consensus        46 ~~L~~L~l~~~~----i~~l~-~l~~l~~L~~L~L~~n~i~~l-~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~  116 (210)
T d1h6ta2          46 NSIDQIIANNSD----IKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKS  116 (210)
T ss_dssp             HTCCEEECTTSC----CCCCT-TGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCE
T ss_pred             cCccEEECcCCC----CCCch-hHhhCCCCCEEeCCCccccCc-cccccCccccccccccccccc--ccc-ccccccccc
Confidence            467888777211    11222 366789999999999988553 345679999999999998654  222 566899999


Q ss_pred             EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc-ccc-cccccEEEeecccCCc
Q 042585          175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI-TIS-SLRLKKLIINTCESNT  250 (286)
Q Consensus       175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~-~i~-~p~L~~L~ls~c~~~~  250 (286)
                      |++.++...  ..+..+++|+.+.+.++.+++.   .....+++|+.+++.++.- +.+ .+. .++|+.|+++++. ++
T Consensus       117 L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~---~~~~~l~~L~~l~l~~n~l-~~i~~l~~l~~L~~L~Ls~N~-i~  191 (210)
T d1h6ta2         117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSKNH-IS  191 (210)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC-CCCGGGTTCTTCCEEECCSSC-CC
T ss_pred             ccccccccccccccccccccccccccccccccc---ccccccccccccccccccc-cccccccCCCCCCEEECCCCC-CC
Confidence            999977543  3344488999999998776653   3456789999999999743 333 232 4899999999884 44


Q ss_pred             c
Q 042585          251 I  251 (286)
Q Consensus       251 ~  251 (286)
                      .
T Consensus       192 ~  192 (210)
T d1h6ta2         192 D  192 (210)
T ss_dssp             B
T ss_pred             C
Confidence            3

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.8e-08  Score=76.59  Aligned_cols=102  Identities=20%  Similarity=0.145  Sum_probs=46.5

Q ss_pred             ccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccce----eecccCCceE
Q 042585          120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVN----VSSCKNLKHL  195 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~----~~~~~~L~~L  195 (286)
                      ++.+++.|+|+++.+.........+++|++|+|+++.++.-  +. +..+|+|+.|++++|.....    +..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~-~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CC-cccCcchhhhhcccccccCCCccccccccccccc
Confidence            34455555555555533222223455555555555553221  11 23455555555555432211    1115555555


Q ss_pred             EecCcccChh-hHHHHHhcCCCccEEecccc
Q 042585          196 DLCDGSYTDE-WLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       196 ~l~~~~~~~~-~l~~~~~~~p~L~~L~l~~c  225 (286)
                      ++.++.+.+- .+ .....+|+|++|++.+|
T Consensus        93 ~L~~N~i~~~~~l-~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          93 ILTNNSLVELGDL-DPLASLKSLTYLCILRN  122 (162)
T ss_dssp             ECCSCCCCCGGGG-GGGGGCTTCCEEECCSS
T ss_pred             eeccccccccccc-cccccccccchhhcCCC
Confidence            5555544321 11 12235555666665554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=6.3e-08  Score=73.54  Aligned_cols=124  Identities=15%  Similarity=0.122  Sum_probs=87.6

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++|+++..    .-..++.....+++|+.|+|+++.+... +....+++|++|+++++.++.-. ..+...+|+|+.
T Consensus        18 ~~lr~L~L~~n----~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L~~   91 (162)
T d1a9na_          18 VRDRELDLRGY----KIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTE   91 (162)
T ss_dssp             TSCEEEECTTS----CCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCE
T ss_pred             CcCcEEECCCC----CCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCC-cccccccccccc
Confidence            36788988811    1123455556789999999999988553 45667999999999999844311 123456999999


Q ss_pred             EEeeecccc--ce---eecccCCceEEecCcccChh-hH-HHHHhcCCCccEEeccc
Q 042585          175 LEFVRYNNL--VN---VSSCKNLKHLDLCDGSYTDE-WL-NSQISGLPLLEQLHISL  224 (286)
Q Consensus       175 L~l~~c~~~--~~---~~~~~~L~~L~l~~~~~~~~-~l-~~~~~~~p~L~~L~l~~  224 (286)
                      |++.++...  .+   +..+|+|++|++.++.+++. .. ..+...+|+|++|+-..
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCC
Confidence            999987532  22   33389999999999876542 22 24567899999998544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.56  E-value=9.6e-08  Score=74.91  Aligned_cols=129  Identities=16%  Similarity=0.197  Sum_probs=93.6

Q ss_pred             ccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEEe
Q 042585          120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLDL  197 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~l  197 (286)
                      ..+++++|+++++.+... .....+++|++|+|+++.+++..  . +..+|+|+.|+++++...  ..+..+++|+.|++
T Consensus        38 ~l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l  113 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL  113 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             HhcCCCEEECCCCCCCCc-cccccCCCcCcCccccccccCcc--c-ccCCcccccccccccccccccccccccccccccc
Confidence            468899999999988553 45667999999999999855422  2 568999999999987543  23444899999999


Q ss_pred             cCcccChhhHHHHHhcCCCccEEecccccCccccc-c-ccccccEEEeecccCCccccccc
Q 042585          198 CDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT-I-SSLRLKKLIINTCESNTIFSFGS  256 (286)
Q Consensus       198 ~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~-i-~~p~L~~L~ls~c~~~~~~~~~~  256 (286)
                      .++.....   .....+++|+.|+++++.- ..+. + ..++|+.|++++|+.-+..++..
T Consensus       114 ~~~~~~~~---~~~~~l~~L~~L~l~~n~l-~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~  170 (199)
T d2omxa2         114 FNNQITDI---DPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLNFSSNQVTDLKPLAN  170 (199)
T ss_dssp             CSSCCCCC---GGGTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCCCCGGGTT
T ss_pred             cccccccc---cccchhhhhHHhhhhhhhh-cccccccccccccccccccccccCCccccC
Confidence            98765542   2246789999999999742 2322 2 25799999999885433323433

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=8.8e-09  Score=74.13  Aligned_cols=38  Identities=34%  Similarity=0.533  Sum_probs=34.9

Q ss_pred             CcccCCCCC----HHHHHHHHccCChhhHHHhhhhhhhhHhh
Q 042585           13 NVDRISALP----QPILQLIMSFLPFKQVVQICMVSKVWLQA   50 (286)
Q Consensus        13 ~~d~i~~LP----deil~~Ils~L~~~d~~~~~~vskrW~~l   50 (286)
                      ..|.|+.||    |||+.+|||||+.+|+++++.|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            467888898    69999999999999999999999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.49  E-value=2.7e-07  Score=72.86  Aligned_cols=138  Identities=22%  Similarity=0.261  Sum_probs=99.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++|+++...    -..++ .+..+++|+.|+++++.+... +....+++|+.|++.++.+.+  +.. +..++.|+.
T Consensus        68 ~~L~~L~L~~n~----i~~l~-~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~l~~~~~~~--~~~-l~~l~~l~~  138 (210)
T d1h6ta2          68 PNVTKLFLNGNK----LTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISD--ING-LVHLPQLES  138 (210)
T ss_dssp             TTCCEEECCSSC----CCCCG-GGTTCTTCCEEECCSSCCCCG-GGGTTCTTCCEEECTTSCCCC--CGG-GGGCTTCCE
T ss_pred             CCCCEEeCCCcc----ccCcc-ccccCcccccccccccccccc-ccccccccccccccccccccc--ccc-ccccccccc
Confidence            689999998221    11233 346789999999999988553 456679999999999998432  112 567899999


Q ss_pred             EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc-cc-cccccEEEeec
Q 042585          175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT-IS-SLRLKKLIINT  245 (286)
Q Consensus       175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~-i~-~p~L~~L~ls~  245 (286)
                      +.+.++...  ..+..+++|+.+.+.++.+++-   .-...+++|+.|++++|. ++++. +. .++|+.|++++
T Consensus       139 l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i---~~l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDI---VPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC---GGGTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccc---ccccCCCCCCEEECCCCC-CCCChhhcCCCCCCEEEccC
Confidence            999866432  2233389999999998877642   124688999999999983 45543 32 47999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.48  E-value=1.2e-08  Score=80.23  Aligned_cols=125  Identities=19%  Similarity=0.186  Sum_probs=89.3

Q ss_pred             CceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           96 NVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        96 ~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      ..+++++. ..+   .-..++..+...++|++|+|+++.+... +....+++|++|+|+++.+++  +..+...++.|+.
T Consensus        24 ~~~~~~l~~~~~---~i~~l~~sl~~L~~L~~L~Ls~n~I~~i-~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~   97 (198)
T d1m9la_          24 EAEKVELHGMIP---PIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKK--IENLDAVADTLEE   97 (198)
T ss_dssp             TCSCEECCBCCT---TCCCCHHHHHHTTTCCEEECSEEEESCC-CCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCE
T ss_pred             ccceeeeecccC---chhhhhhHHhcccccceeECcccCCCCc-ccccCCccccChhhccccccc--ccccccccccccc
Confidence            35566665 222   2345666788899999999999988553 456679999999999999653  2233445678999


Q ss_pred             EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      |++.++...  ..+..+++|+.|+++++.+++-.-......+|+|++|++++++
T Consensus        98 L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          98 LWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EECSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            999877432  2233389999999998887652111345789999999999964

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.43  E-value=5.2e-07  Score=71.94  Aligned_cols=126  Identities=17%  Similarity=0.193  Sum_probs=70.5

Q ss_pred             hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccc---------------
Q 042585          118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNN---------------  182 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~---------------  182 (286)
                      +..+++|+.|+++++.+... .....+++|+++.+.++.+++  +.. +..+++|+.+++.+|..               
T Consensus        59 l~~l~~L~~L~ls~n~i~~~-~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  134 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL  134 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred             HhcCCCCcEeecCCceeecc-ccccccccccccccccccccc--ccc-ccccccccccccccccccccchhccccchhhh
Confidence            44556666666666555321 223445566666665554221  111 23455555555544321               


Q ss_pred             -------c--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc-c-ccccccEEEeecccCCcc
Q 042585          183 -------L--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT-I-SSLRLKKLIINTCESNTI  251 (286)
Q Consensus       183 -------~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~-i-~~p~L~~L~ls~c~~~~~  251 (286)
                             .  ..+..+++|+.|.+.++.+.+.   .-...+|+|++|++++| .++++. + ..|+|+.|++++|+ ++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N~-lt~  209 (227)
T d1h6ua2         135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISD  209 (227)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCB
T ss_pred             hchhhhhchhhhhccccccccccccccccccc---hhhcccccceecccCCC-ccCCChhhcCCCCCCEEECcCCc-CCC
Confidence                   1  1122267888888887765542   12457888999998887 344442 2 24889999998884 444


Q ss_pred             c
Q 042585          252 F  252 (286)
Q Consensus       252 ~  252 (286)
                      +
T Consensus       210 i  210 (227)
T d1h6ua2         210 V  210 (227)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.40  E-value=1.2e-06  Score=74.92  Aligned_cols=130  Identities=17%  Similarity=0.214  Sum_probs=72.9

Q ss_pred             ccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecc------------------
Q 042585          120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYN------------------  181 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~------------------  181 (286)
                      .+++|+.|+++++.+... +....+++|+.|++.++.+++-.  . ...+|+|+.|+++++.                  
T Consensus       217 ~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~--~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         217 ILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLA--P-LSGLTKLTELKLGANQISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             GCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             ccCCCCEEECCCCCCCCc-chhhcccccchhccccCccCCCC--c-ccccccCCEeeccCcccCCCCccccccccccccc
Confidence            345566666666555332 23344566666666665532211  1 3445566666554332                  


Q ss_pred             ----cc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc-cc-cccccEEEeecccCCcccc
Q 042585          182 ----NL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT-IS-SLRLKKLIINTCESNTIFS  253 (286)
Q Consensus       182 ----~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~-i~-~p~L~~L~ls~c~~~~~~~  253 (286)
                          ..  ..+..+++++.|+++++.+++-   .-...+|+|++|++++|. ++.+. +. .|+|+.|++++++--+..+
T Consensus       293 ~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l---~~l~~l~~L~~L~L~~n~-l~~l~~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         293 NENQLEDISPISNLKNLTYLTLYFNNISDI---SPVSSLTKLQRLFFANNK-VSDVSSLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CSSCCSCCGGGGGCTTCSEEECCSSCCSCC---GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCBCGG
T ss_pred             cccccccccccchhcccCeEECCCCCCCCC---cccccCCCCCEEECCCCC-CCCChhHcCCCCCCEEECCCCcCCCChh
Confidence                11  1122277888888887766642   124678899999998883 34332 22 4789999998875433333


Q ss_pred             cccc
Q 042585          254 FGSI  257 (286)
Q Consensus       254 ~~~~  257 (286)
                      +.++
T Consensus       369 l~~l  372 (384)
T d2omza2         369 LANL  372 (384)
T ss_dssp             GTTC
T ss_pred             hccC
Confidence            4443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=2.9e-07  Score=66.50  Aligned_cols=101  Identities=23%  Similarity=0.224  Sum_probs=59.1

Q ss_pred             chhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc-----ceeecccC
Q 042585          117 MVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL-----VNVSSCKN  191 (286)
Q Consensus       117 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~-----~~~~~~~~  191 (286)
                      .+..+++|++|+++++.+....+....+++|++|+++++.+++-  .. +..+|+|+.|++.++...     ..+..+++
T Consensus        15 ~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          15 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPR   91 (124)
T ss_dssp             CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc--Cc-cccccccCeEECCCCccCCCCCchhhcCCCC
Confidence            35667778888887777755433455677788888877774331  12 456777777777765321     11222667


Q ss_pred             CceEEecCcccChh--hHHHHHhcCCCccEE
Q 042585          192 LKHLDLCDGSYTDE--WLNSQISGLPLLEQL  220 (286)
Q Consensus       192 L~~L~l~~~~~~~~--~l~~~~~~~p~L~~L  220 (286)
                      |+.|++.++.+++.  ....+....|+|+.+
T Consensus        92 L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          92 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            77777766544321  122445556666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=1.7e-07  Score=67.75  Aligned_cols=97  Identities=22%  Similarity=0.205  Sum_probs=70.2

Q ss_pred             cEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEEecCccc
Q 042585          125 KVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLDLCDGSY  202 (286)
Q Consensus       125 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~l~~~~~  202 (286)
                      +.|+|+++.+... +....+++|++|+++++.++.  +..-+..+++|+.|+++++...  ..+..+++|++|+++++.+
T Consensus         1 R~L~Ls~n~l~~l-~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCC-cccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccCccccccccCeEECCCCcc
Confidence            4678888887543 456679999999999998543  2222567999999999976432  3344489999999998876


Q ss_pred             Chh-hHHHHHhcCCCccEEecccc
Q 042585          203 TDE-WLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       203 ~~~-~l~~~~~~~p~L~~L~l~~c  225 (286)
                      ++- .+ .....+|+|++|++++.
T Consensus        78 ~~~~~~-~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          78 QQSAAI-QPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             CSSSTT-GGGGGCTTCCEEECTTS
T ss_pred             CCCCCc-hhhcCCCCCCEEECCCC
Confidence            542 12 23467899999999884

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.31  E-value=1.6e-06  Score=69.02  Aligned_cols=125  Identities=20%  Similarity=0.186  Sum_probs=83.7

Q ss_pred             hccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEE
Q 042585          119 LRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLD  196 (286)
Q Consensus       119 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~  196 (286)
                      ..+++|+.|.+.+|.+..+ .....+++|++|+++++.+++-.  . +..+++|+.|++.++...  ..+..+++|+.+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~  113 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLD  113 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEE
T ss_pred             HHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeeccc--c-ccccccccccccccccccccccccccccccccc
Confidence            4568899999999988654 55678999999999999854321  1 577999999999976443  2233388888888


Q ss_pred             ecCcccChhh-H------------------HHHHhcCCCccEEecccccCccccccc-cccccEEEeeccc
Q 042585          197 LCDGSYTDEW-L------------------NSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTCE  247 (286)
Q Consensus       197 l~~~~~~~~~-l------------------~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~  247 (286)
                      +.++...+.. +                  ..-...+++|++|.+.+|.......+. .++|+.|+++++.
T Consensus       114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK  184 (227)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCc
Confidence            8766533210 0                  011345666777777665432222222 4788888888874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.7e-07  Score=75.57  Aligned_cols=167  Identities=19%  Similarity=0.156  Sum_probs=104.4

Q ss_pred             CCceEEEEEeccCCCcccCCCc-chhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQ-MVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      +++++|+|++..    -..+|. .+...++|++|+|+++.+... +....+++|++|+|+++.++..  .......|+|+
T Consensus        31 ~~l~~L~Ls~N~----i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~  103 (266)
T d1p9ag_          31 KDTTILHLSENL----LYTFSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALT  103 (266)
T ss_dssp             TTCCEEECTTSC----CSEEEGGGGTTCTTCCEEECTTSCCCEE-ECCSCCTTCCEEECCSSCCSSC--CCCTTTCTTCC
T ss_pred             cCCCEEECcCCc----CCCcCHHHhhcccccccccccccccccc-cccccccccccccccccccccc--ccccccccccc
Confidence            467888887211    123443 455778999999998877443 3445689999999998884321  12356688999


Q ss_pred             eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---cc-cccccEEEeec
Q 042585          174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---IS-SLRLKKLIINT  245 (286)
Q Consensus       174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i~-~p~L~~L~ls~  245 (286)
                      .|+++++....    .+...++++.|.+.++.+..-. .......++|+.++++++. ++.+.   +. .++|+.|++++
T Consensus       104 ~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred             cccccccccceeeccccccccccccccccccccceec-cccccccccchhccccccc-ccccCccccccccccceeeccc
Confidence            99998765431    1222788888888876544211 1334567889999988863 22222   22 47899999988


Q ss_pred             ccCCcccc---ccccceeeeccC-CCCCcc
Q 042585          246 CESNTIFS---FGSIALFSLALR-KPLGLA  271 (286)
Q Consensus       246 c~~~~~~~---~~~~~l~s~~~~-~~~~~~  271 (286)
                      +. ++.+.   +....+..+.+. .|+...
T Consensus       182 N~-L~~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         182 NS-LYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             SC-CCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CC-CcccChhHCCCCCCCEEEecCCCCCCC
Confidence            75 34432   233335555554 577543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.27  E-value=3.2e-07  Score=77.94  Aligned_cols=152  Identities=18%  Similarity=0.264  Sum_probs=97.9

Q ss_pred             CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeeccC--Cc------------CcccCCCccEEEcceeeeCh
Q 042585           95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL--GN------------DDVKLLSLRKLHLSDVYADD  159 (286)
Q Consensus        95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~------------~~~~~~~L~~L~L~~~~~~~  159 (286)
                      .++++|+++ +...+.....+...+..+++|++|++++|.+...  ..            .....+.|+.|.+.++.+++
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            578899888 3222222334444556788999999988765110  00            01246788888888877776


Q ss_pred             HHHHHH---HhcCCCcceEEeeeccccc---------eeecccCCceEEecCcccChhhHH---HHHhcCCCccEEeccc
Q 042585          160 QVMNNL---FAQSPLLQHLEFVRYNNLV---------NVSSCKNLKHLDLCDGSYTDEWLN---SQISGLPLLEQLHISL  224 (286)
Q Consensus       160 ~~l~~l---~~~cp~Le~L~l~~c~~~~---------~~~~~~~L~~L~l~~~~~~~~~l~---~~~~~~p~L~~L~l~~  224 (286)
                      .++..+   +..++.|++|++.+|....         .+..+++|+.|+++++.+++.+..   .....+++|++|++++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence            655443   4568889999988775321         122278899999988777765433   3346788899999988


Q ss_pred             ccCccccc----------cccccccEEEeeccc
Q 042585          225 CNNIESIT----------ISSLRLKKLIINTCE  247 (286)
Q Consensus       225 c~~~~~~~----------i~~p~L~~L~ls~c~  247 (286)
                      |. +++.+          ...+.|++|+++++.
T Consensus       253 n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         253 CL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             CC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             Cc-cCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            74 22211          112578888888874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.1e-07  Score=78.72  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=17.2

Q ss_pred             CCCccEEEcceeeeChHHHHHHH---hcCCCcceEEeee
Q 042585          144 LLSLRKLHLSDVYADDQVMNNLF---AQSPLLQHLEFVR  179 (286)
Q Consensus       144 ~~~L~~L~L~~~~~~~~~l~~l~---~~cp~Le~L~l~~  179 (286)
                      +++||+|+|.+|.+++.+++.+.   ..||+|++|++++
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~   64 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS   64 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTT
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcC
Confidence            44555555555554444433332   3455555555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.17  E-value=3.5e-06  Score=71.76  Aligned_cols=141  Identities=19%  Similarity=0.214  Sum_probs=90.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeCh-H-------------
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADD-Q-------------  160 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~-------------  160 (286)
                      .+++++++....    -..+ ..+..+++|+.|+++++.+... +....+++|++|+++++.+.. .             
T Consensus       219 ~~L~~L~l~~n~----l~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         219 TNLDELSLNGNQ----LKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             TTCCEEECCSSC----CCCC-GGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             CCCCEEECCCCC----CCCc-chhhcccccchhccccCccCCC-CcccccccCCEeeccCcccCCCCccccccccccccc
Confidence            567777776111    1112 2455667777777777666432 234456777777776655211 0             


Q ss_pred             ------HHHHHHhcCCCcceEEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc-
Q 042585          161 ------VMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI-  231 (286)
Q Consensus       161 ------~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~-  231 (286)
                            ++. -...+++++.|+++++...  ..+..+|+|++|++++|.+++-   .....+|+|++|++++|. ++.+ 
T Consensus       293 ~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l---~~l~~l~~L~~L~l~~N~-l~~l~  367 (384)
T d2omza2         293 NENQLEDIS-PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQ-ISDLT  367 (384)
T ss_dssp             CSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSC-CCBCG
T ss_pred             ccccccccc-ccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCC---hhHcCCCCCCEEECCCCc-CCCCh
Confidence                  011 1467899999999876432  2233499999999999887652   224679999999999874 3333 


Q ss_pred             ccc-cccccEEEeecc
Q 042585          232 TIS-SLRLKKLIINTC  246 (286)
Q Consensus       232 ~i~-~p~L~~L~ls~c  246 (286)
                      .+. .++|+.|++++.
T Consensus       368 ~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         368 PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGTTCTTCSEEECCCE
T ss_pred             hhccCCCCCEeeCCCC
Confidence            233 479999998763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.11  E-value=1.2e-06  Score=74.32  Aligned_cols=127  Identities=16%  Similarity=0.096  Sum_probs=73.8

Q ss_pred             ccCCccEEEEeceeecc-----CCcCcccCCCccEEEcceeeeChHHHHH----HHhcCCCcceEEeeecccc----c--
Q 042585          120 RSKSIKVLTLQNYKLES-----LGNDDVKLLSLRKLHLSDVYADDQVMNN----LFAQSPLLQHLEFVRYNNL----V--  184 (286)
Q Consensus       120 ~~~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~l~~----l~~~cp~Le~L~l~~c~~~----~--  184 (286)
                      ..+.|+.+.++++.+..     +......++.|++|+|.++.+++.++..    .+..+|+|+.|+++++...    .  
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            44667777777665521     1011224677778888777766655433    2345777888877765421    1  


Q ss_pred             --eeecccCCceEEecCcccChhhHHHHHh-----cCCCccEEecccccCccccc-------c--ccccccEEEeeccc
Q 042585          185 --NVSSCKNLKHLDLCDGSYTDEWLNSQIS-----GLPLLEQLHISLCNNIESIT-------I--SSLRLKKLIINTCE  247 (286)
Q Consensus       185 --~~~~~~~L~~L~l~~~~~~~~~l~~~~~-----~~p~L~~L~l~~c~~~~~~~-------i--~~p~L~~L~ls~c~  247 (286)
                        .+..+++|++|++.+|.+++.+...+..     ..+.|++|+++++. ++..+       +  ..+.|+.|+++++.
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence              1122677888888777777665544432     24567788887763 32211       1  13677777777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.5e-06  Score=70.89  Aligned_cols=145  Identities=17%  Similarity=0.112  Sum_probs=98.7

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++|+++...    -..+| .....++|+.|+|+++.+.........+++|+.|+++++.+..-. .......++++.
T Consensus        55 ~~L~~L~L~~N~----l~~l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~l~~  128 (266)
T d1p9ag_          55 TRLTQLNLDRAE----LTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP-LGALRGLGELQE  128 (266)
T ss_dssp             TTCCEEECTTSC----CCEEE-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCC-SSTTTTCTTCCE
T ss_pred             cccccccccccc----ccccc-cccccccccccccccccccccccccccccccccccccccccceee-cccccccccccc
Confidence            678999998211    11233 234678999999999988654456677999999999998832211 112356889999


Q ss_pred             EEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---cccccccEEEeeccc
Q 042585          175 LEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---ISSLRLKKLIINTCE  247 (286)
Q Consensus       175 L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i~~p~L~~L~ls~c~  247 (286)
                      |.+.++...    ..+...++|+.|+++++.++.-.. .....+++|++|+++++. ++.+.   ...++|+.|++++.+
T Consensus       129 L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccccccceeccccccccccchhcccccccccccCc-cccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCC
Confidence            999866432    112227899999999887654211 334678999999999974 33432   335789999998643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.1e-06  Score=74.70  Aligned_cols=102  Identities=13%  Similarity=0.122  Sum_probs=80.7

Q ss_pred             CCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----cee----ecccCCceEEecCcccChhhHHHHHh----
Q 042585          145 LSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNV----SSCKNLKHLDLCDGSYTDEWLNSQIS----  212 (286)
Q Consensus       145 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~----~~~~~L~~L~l~~~~~~~~~l~~~~~----  212 (286)
                      ++|++|++++..+++.++..++..+++|+.|+|.+|...    ..+    ..+++|+.|+++++.+++.++..+..    
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            478999998888999999999999999999999998532    111    22899999999999888877666654    


Q ss_pred             cCCCccEEecccccCcccccc--------ccccccEEEeeccc
Q 042585          213 GLPLLEQLHISLCNNIESITI--------SSLRLKKLIINTCE  247 (286)
Q Consensus       213 ~~p~L~~L~l~~c~~~~~~~i--------~~p~L~~L~ls~c~  247 (286)
                      ..++|++|++++|. +++.++        ..++|+.|+++++.
T Consensus        82 ~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          82 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence            34689999999985 554332        25799999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.06  E-value=7e-07  Score=69.87  Aligned_cols=122  Identities=14%  Similarity=0.161  Sum_probs=84.6

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      -.++++|++++..  .  ..++ .+..+++|+.|+|++|.+.........+++|++|++.++.+++  +.. +..+++|+
T Consensus        47 L~~L~~L~Ls~n~--I--~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~--l~~-~~~l~~L~  118 (198)
T d1m9la_          47 LKACKHLALSTNN--I--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSG-IEKLVNLR  118 (198)
T ss_dssp             TTTCCEEECSEEE--E--SCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC--HHH-HHHHHHSS
T ss_pred             ccccceeECcccC--C--CCcc-cccCCccccChhhcccccccccccccccccccccccccccccc--ccc-cccccccc
Confidence            3689999998222  1  1333 4678999999999999986543333446789999999999664  233 45689999


Q ss_pred             eEEeeecccc--c---eeecccCCceEEecCcccChhh---------HHHHHhcCCCccEEecc
Q 042585          174 HLEFVRYNNL--V---NVSSCKNLKHLDLCDGSYTDEW---------LNSQISGLPLLEQLHIS  223 (286)
Q Consensus       174 ~L~l~~c~~~--~---~~~~~~~L~~L~l~~~~~~~~~---------l~~~~~~~p~L~~L~l~  223 (286)
                      .|+++++...  .   .+..+|+|+.|++.++.+....         -..+...+|+|+.|+-.
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence            9999987432  2   2334899999999987543211         12335678888888743

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.89  E-value=1.4e-05  Score=60.46  Aligned_cols=83  Identities=10%  Similarity=0.121  Sum_probs=55.4

Q ss_pred             cCCCccEEEcceee-eChHHHHHHH---hcCCCcceEEeeecccc----ceee----cccCCceEEecCcccChhhHHHH
Q 042585          143 KLLSLRKLHLSDVY-ADDQVMNNLF---AQSPLLQHLEFVRYNNL----VNVS----SCKNLKHLDLCDGSYTDEWLNSQ  210 (286)
Q Consensus       143 ~~~~L~~L~L~~~~-~~~~~l~~l~---~~cp~Le~L~l~~c~~~----~~~~----~~~~L~~L~l~~~~~~~~~l~~~  210 (286)
                      ..|+|++|+|.++. +++.++..++   ..++.|++|++++|...    ..++    ..++|++|++++|.+++++...+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            35778888887765 7777666554   35677888888776432    1111    16788888888887777665444


Q ss_pred             ---HhcCCCccEEecccc
Q 042585          211 ---ISGLPLLEQLHISLC  225 (286)
Q Consensus       211 ---~~~~p~L~~L~l~~c  225 (286)
                         ....+.|++|++.++
T Consensus        93 ~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCC
Confidence               345677888888764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.81  E-value=2.6e-05  Score=58.70  Aligned_cols=81  Identities=11%  Similarity=0.121  Sum_probs=39.3

Q ss_pred             CCCccEEEcceee-eChHHHHHHHh---cCCCcceEEeeecccc----cee----ecccCCceEEecCcccChhhHHHHH
Q 042585          144 LLSLRKLHLSDVY-ADDQVMNNLFA---QSPLLQHLEFVRYNNL----VNV----SSCKNLKHLDLCDGSYTDEWLNSQI  211 (286)
Q Consensus       144 ~~~L~~L~L~~~~-~~~~~l~~l~~---~cp~Le~L~l~~c~~~----~~~----~~~~~L~~L~l~~~~~~~~~l~~~~  211 (286)
                      .|+|++|+|.++. +++.++..++.   .++.|++|++++|...    ..+    ...++++.+++.++.+++++...+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            4555555555544 55555444443   3555555555554321    011    1145566666555555554443332


Q ss_pred             ---hcCCCccEEeccc
Q 042585          212 ---SGLPLLEQLHISL  224 (286)
Q Consensus       212 ---~~~p~L~~L~l~~  224 (286)
                         ...++|+.+++..
T Consensus        96 ~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          96 EALQSNTSLIELRIDN  111 (166)
T ss_dssp             HGGGGCSSCCEEECCC
T ss_pred             HHHHhCccccEEeecc
Confidence               3445555555544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.79  E-value=1.6e-05  Score=66.09  Aligned_cols=126  Identities=16%  Similarity=0.160  Sum_probs=80.7

Q ss_pred             CceEEEEE-eccCCCcccCCCcchhccCCccEEEEece-eec-cCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585           96 NVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNY-KLE-SLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL  172 (286)
Q Consensus        96 ~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  172 (286)
                      .|.+|++. ...  .....+|..+.+.++|++|+|+++ .+. ..++...++++|++|+|+++.+.... .......+.|
T Consensus        51 ~v~~L~L~~~~l--~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-~~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNL--PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCC--SSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTC
T ss_pred             EEEEEECCCCCC--CCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc-cccccchhhh
Confidence            57888888 222  134578999999999999999974 453 33345667999999999998732211 1224568889


Q ss_pred             ceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCc-cEEecccc
Q 042585          173 QHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLL-EQLHISLC  225 (286)
Q Consensus       173 e~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L-~~L~l~~c  225 (286)
                      +.+++..+...    ..+..+++|+.+++.++.+..... ......+++ +.+.+.++
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip-~~~~~l~~l~~~l~~~~n  184 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSS
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccc-cccccccccccccccccc
Confidence            99999876433    223348888999888765442111 112233343 55655543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.79  E-value=1.8e-05  Score=65.43  Aligned_cols=127  Identities=11%  Similarity=0.094  Sum_probs=80.3

Q ss_pred             CcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeeccc
Q 042585          115 PQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCK  190 (286)
Q Consensus       115 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~  190 (286)
                      +..+..+++|+.+++.++.+...  ....+++|++|++.++....... .....++.++.|+++++....    .+..++
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~~l--~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~  219 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNITTI--PQGLPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTP  219 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCSC--CSSCCTTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred             ccccccccccCccccccCCcccc--CcccCCccCEEECCCCcCCCCCh-hHhhccccccccccccccccccccccccccc
Confidence            33455667888888888776442  22347888888888876322211 224668888888888764321    122378


Q ss_pred             CCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc----------cccccccEEEeeccc
Q 042585          191 NLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT----------ISSLRLKKLIINTCE  247 (286)
Q Consensus       191 ~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~----------i~~p~L~~L~ls~c~  247 (286)
                      +|++|+++++.++.-  ..-...+|+|++|+++++. ++.+.          ...++|+.|++++.+
T Consensus       220 ~L~~L~L~~N~L~~l--p~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         220 HLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             TCCEEECCSSCCSSC--CTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cceeeeccccccccc--ccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence            888888888765531  0223567888888888863 33331          123678888888764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.4e-05  Score=63.11  Aligned_cols=127  Identities=18%  Similarity=0.069  Sum_probs=64.8

Q ss_pred             chhccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccC
Q 042585          117 MVLRSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKN  191 (286)
Q Consensus       117 ~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~  191 (286)
                      .+..+++|++|+++++.+... ......+++|+.+++.++.++.-. ...+..+++|+.|+++++...    ..+..+++
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~-~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccC-hhHhccccchhhcccccCcccccchhhhccccc
Confidence            344566777777776655331 122334666777777766532211 112345667777777655321    11222666


Q ss_pred             CceEEecCcccChhhHHHHHhcCCCccEEecccccCccc--ccc-ccccccEEEeec
Q 042585          192 LKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIES--ITI-SSLRLKKLIINT  245 (286)
Q Consensus       192 L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~--~~i-~~p~L~~L~ls~  245 (286)
                      |+++.+.++.++.-.. .....+++|++|+++++.-...  ..+ ..++|+.|++++
T Consensus       179 L~~l~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             cchhhhhhccccccCh-hHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            7777776554432110 2235566677777766532211  111 235666666665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.6e-05  Score=65.14  Aligned_cols=105  Identities=17%  Similarity=0.091  Sum_probs=56.7

Q ss_pred             hhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCC
Q 042585          118 VLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNL  192 (286)
Q Consensus       118 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L  192 (286)
                      .....+|+.+++.++.+....+ ....+++|++|+|.++.+..-.- ..+.++++|+.|.+.++....    .+..+++|
T Consensus       125 ~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~-~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cchhcccchhhhccccccccChhHhccccchhhcccccCcccccch-hhhccccccchhhhhhccccccChhHhhhhhhc
Confidence            3345667777777666633212 23346667777777666322111 123456777777776553321    12225677


Q ss_pred             ceEEecCcccChhhHHHHHhcCCCccEEeccc
Q 042585          193 KHLDLCDGSYTDEWLNSQISGLPLLEQLHISL  224 (286)
Q Consensus       193 ~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~  224 (286)
                      ++|+++++.+..-.. .....+++|++|++++
T Consensus       204 ~~L~l~~N~i~~~~~-~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         204 MTLYLFANNLSALPT-EALAPLRALQYLRLND  234 (284)
T ss_dssp             CEEECCSSCCSCCCH-HHHTTCTTCCEEECCS
T ss_pred             ccccccccccccccc-cccccccccCEEEecC
Confidence            777777665443221 3445667777777766

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.64  E-value=1.9e-05  Score=60.91  Aligned_cols=111  Identities=19%  Similarity=0.140  Sum_probs=73.8

Q ss_pred             cCCCcchhccCCccEEEEeceeecc-C-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ce
Q 042585          112 NSLPQMVLRSKSIKVLTLQNYKLES-L-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VN  185 (286)
Q Consensus       112 ~~l~~~~~~~~~L~~L~L~~~~~~~-~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~  185 (286)
                      ..+|..+.  +++++|+|+++.+.. . ......+++|++|+|.++.+.... .......++|+.|++++....    ..
T Consensus        21 ~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls~N~l~~l~~~~   97 (192)
T d1w8aa_          21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             CccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc-ccccccccccceeeeccccccccCHHH
Confidence            35555442  688999999988732 2 133456899999999888733221 123456889999999876432    22


Q ss_pred             eecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          186 VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       186 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      |...++|+.|+++++.++.-. .......++|++|++++..
T Consensus        98 F~~l~~L~~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          98 FLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCC
T ss_pred             HhCCCcccccccCCccccccC-HHHhcCCcccccccccccc
Confidence            444889999999987655310 0234578899999998854

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.63  E-value=0.00011  Score=60.80  Aligned_cols=83  Identities=11%  Similarity=0.133  Sum_probs=56.0

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .++++|+++...  ...-.+|..+.++++|++|+|+++.+.. .......+++|+.+.+.++..... +..-+..++.|+
T Consensus        76 ~~L~~L~Ls~~N--~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~  152 (313)
T d1ogqa_          76 PYLNFLYIGGIN--NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLV  152 (313)
T ss_dssp             TTCSEEEEEEET--TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCC
T ss_pred             cccccccccccc--ccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCcccc
Confidence            689999998221  1223689999999999999999987733 223355688888888887762211 111245677788


Q ss_pred             eEEeeec
Q 042585          174 HLEFVRY  180 (286)
Q Consensus       174 ~L~l~~c  180 (286)
                      .++++++
T Consensus       153 ~l~l~~n  159 (313)
T d1ogqa_         153 GITFDGN  159 (313)
T ss_dssp             EEECCSS
T ss_pred             eeecccc
Confidence            8877654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.55  E-value=0.00015  Score=59.61  Aligned_cols=57  Identities=16%  Similarity=0.231  Sum_probs=32.2

Q ss_pred             ccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc--ccc-cccccEEEeeccc
Q 042585          189 CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI--TIS-SLRLKKLIINTCE  247 (286)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~--~i~-~p~L~~L~ls~c~  247 (286)
                      +++++.|+++++.++.-.. .....+++|++|++++|. ++.+  .+. .++|+.|+++++.
T Consensus       194 ~~~l~~L~~s~n~l~~~~~-~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         194 LNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             CTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred             ccccccccccccccccccc-ccccccccceeeeccccc-ccccccccccccCCCEEECCCCc
Confidence            4555666665544332111 233567788888887762 3333  222 4788888888763

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.43  E-value=0.0001  Score=55.23  Aligned_cols=107  Identities=12%  Similarity=0.078  Sum_probs=72.0

Q ss_pred             hccCCccEEEEec-eeecc--C---CcCcccCCCccEEEcceeeeChHHHHHHH---hcCCCcceEEeeecccc------
Q 042585          119 LRSKSIKVLTLQN-YKLES--L---GNDDVKLLSLRKLHLSDVYADDQVMNNLF---AQSPLLQHLEFVRYNNL------  183 (286)
Q Consensus       119 ~~~~~L~~L~L~~-~~~~~--~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~---~~cp~Le~L~l~~c~~~------  183 (286)
                      ..+++|++|+|.+ +.+..  +   .......++|++|+|+++.+++.++..+.   ...+.|+.|++.+|...      
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3567888888876 33411  1   11123578899999999998887766544   56889999999877543      


Q ss_pred             --ceeecccCCceEEec--CcccChhhH---HHHHhcCCCccEEecccc
Q 042585          184 --VNVSSCKNLKHLDLC--DGSYTDEWL---NSQISGLPLLEQLHISLC  225 (286)
Q Consensus       184 --~~~~~~~~L~~L~l~--~~~~~~~~l---~~~~~~~p~L~~L~l~~c  225 (286)
                        ..+...++|+.+++.  ++.+++++.   ......++.|+.|++...
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence              112227889987776  445777553   344558899999988764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.40  E-value=0.0001  Score=55.37  Aligned_cols=87  Identities=11%  Similarity=0.176  Sum_probs=64.5

Q ss_pred             HHHHHHHhcCCCcceEEeeecccc-----ceee----cccCCceEEecCcccChhhH---HHHHhcCCCccEEecccccC
Q 042585          160 QVMNNLFAQSPLLQHLEFVRYNNL-----VNVS----SCKNLKHLDLCDGSYTDEWL---NSQISGLPLLEQLHISLCNN  227 (286)
Q Consensus       160 ~~l~~l~~~cp~Le~L~l~~c~~~-----~~~~----~~~~L~~L~l~~~~~~~~~l---~~~~~~~p~L~~L~l~~c~~  227 (286)
                      +.++.+...+|.|++|+|+++...     ..+.    ..++|++|++++|.+++++.   .......+.|++|++++|. 
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-   83 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-   83 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-
Confidence            568888899999999999876433     1121    27899999999998887644   3345678999999999983 


Q ss_pred             ccccccc--------cccccEEEeeccc
Q 042585          228 IESITIS--------SLRLKKLIINTCE  247 (286)
Q Consensus       228 ~~~~~i~--------~p~L~~L~ls~c~  247 (286)
                      +++.++.        .+.|++|+++++.
T Consensus        84 i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          84 LTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             cchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            4443322        3789999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.29  E-value=0.00016  Score=55.51  Aligned_cols=106  Identities=15%  Similarity=0.129  Sum_probs=71.7

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      .++++|++++..  .....-+..+...++|+.|+|+++.+.... .....+++|++|+|+++.+..-.- ..+.+.|+|+
T Consensus        29 ~~l~~L~Ls~N~--i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~-~~F~~l~~L~  105 (192)
T d1w8aa_          29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCC
T ss_pred             CCCCEEEeCCCC--CcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCH-HHHhCCCccc
Confidence            478889988222  111222344567899999999998874422 345569999999999998332111 1246789999


Q ss_pred             eEEeeecccc----ceeecccCCceEEecCcccC
Q 042585          174 HLEFVRYNNL----VNVSSCKNLKHLDLCDGSYT  203 (286)
Q Consensus       174 ~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~  203 (286)
                      +|+|++....    ..+...++|++|++.++.+.
T Consensus       106 ~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccCCccccccCHHHhcCCcccccccccccccc
Confidence            9999976533    22444899999999876543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00018  Score=56.90  Aligned_cols=80  Identities=19%  Similarity=0.219  Sum_probs=35.0

Q ss_pred             CccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccce-----eecccCCceEE
Q 042585          123 SIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVN-----VSSCKNLKHLD  196 (286)
Q Consensus       123 ~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~-----~~~~~~L~~L~  196 (286)
                      ++++|+++++.+....+ ...++++|++|+|+++.+....-...+..++.+++|.+..+.....     +..+++|+.|.
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            55666666555533212 1234566666666555411100000123355555555554433211     22255555555


Q ss_pred             ecCccc
Q 042585          197 LCDGSY  202 (286)
Q Consensus       197 l~~~~~  202 (286)
                      +.++.+
T Consensus       110 l~~~~l  115 (242)
T d1xwdc1         110 ISNTGI  115 (242)
T ss_dssp             EESCCC
T ss_pred             cchhhh
Confidence            555433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.89  E-value=0.0007  Score=56.03  Aligned_cols=136  Identities=21%  Similarity=0.184  Sum_probs=89.1

Q ss_pred             hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585           94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ  173 (286)
Q Consensus        94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  173 (286)
                      ..++++|+++...    -..+|..   .++|++|+|+++.+..+ |  ..+.+|++|++.++.++.     +-.-.+.|+
T Consensus        37 ~~~l~~LdLs~~~----L~~lp~~---~~~L~~L~Ls~N~l~~l-p--~~~~~L~~L~l~~n~l~~-----l~~lp~~L~  101 (353)
T d1jl5a_          37 DRQAHELELNNLG----LSSLPEL---PPHLESLVASCNSLTEL-P--ELPQSLKSLLVDNNNLKA-----LSDLPPLLE  101 (353)
T ss_dssp             HHTCSEEECTTSC----CSCCCSC---CTTCSEEECCSSCCSSC-C--CCCTTCCEEECCSSCCSC-----CCSCCTTCC
T ss_pred             HcCCCEEEeCCCC----CCCCCCC---CCCCCEEECCCCCCccc-c--cchhhhhhhhhhhcccch-----hhhhccccc
Confidence            4688999998221    2356653   46899999999888643 2  336789999999887332     112235799


Q ss_pred             eEEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecccCC
Q 042585          174 HLEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTCESN  249 (286)
Q Consensus       174 ~L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~~~  249 (286)
                      .|+++++...  ..++.+++|+.|++.++.....     ....+.+..+.+..+.......+. .+.++.+.++++...
T Consensus       102 ~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         102 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL-----PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccccccccchhhhccceeecccccccccc-----ccccccccchhhccccccccccccccccceeccccccccc
Confidence            9999876432  2333388999999987765432     234677888887775544333333 367888888776543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.78  E-value=0.00096  Score=55.14  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=60.4

Q ss_pred             CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH  174 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  174 (286)
                      .++++|++++..    -..+|..   ..+|+.|++.++.+.....   -.++|++|+++++.+..-  .. ...+++|+.
T Consensus        58 ~~L~~L~Ls~N~----l~~lp~~---~~~L~~L~l~~n~l~~l~~---lp~~L~~L~L~~n~l~~l--p~-~~~l~~L~~  124 (353)
T d1jl5a_          58 PHLESLVASCNS----LTELPEL---PQSLKSLLVDNNNLKALSD---LPPLLEYLGVSNNQLEKL--PE-LQNSSFLKI  124 (353)
T ss_dssp             TTCSEEECCSSC----CSSCCCC---CTTCCEEECCSSCCSCCCS---CCTTCCEEECCSSCCSSC--CC-CTTCTTCCE
T ss_pred             CCCCEEECCCCC----Ccccccc---hhhhhhhhhhhcccchhhh---hccccccccccccccccc--cc-hhhhcccee
Confidence            356777666111    1244433   3567777777766533211   123577777777763321  11 235677777


Q ss_pred             EEeeeccccceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585          175 LEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC  225 (286)
Q Consensus       175 L~l~~c~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c  225 (286)
                      |++.++.........+.+..+.+.+......   .....++.++.+.+.++
T Consensus       125 L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         125 IDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL---PELQNLPFLTAIYADNN  172 (353)
T ss_dssp             EECCSSCCSCCCCCCTTCCEEECCSSCCSSC---CCCTTCTTCCEEECCSS
T ss_pred             eccccccccccccccccccchhhcccccccc---ccccccccceecccccc
Confidence            7776554332222356666666664433221   11235666777776664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00015  Score=54.16  Aligned_cols=15  Identities=33%  Similarity=0.441  Sum_probs=7.1

Q ss_pred             ccCCceEEecCcccC
Q 042585          189 CKNLKHLDLCDGSYT  203 (286)
Q Consensus       189 ~~~L~~L~l~~~~~~  203 (286)
                      +++|+.|+++++.++
T Consensus        90 l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          90 APNLKILNLSGNELK  104 (162)
T ss_dssp             STTCCCCCCTTSCCC
T ss_pred             CCcccccccccCccc
Confidence            445555555544433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00051  Score=50.77  Aligned_cols=87  Identities=18%  Similarity=0.132  Sum_probs=44.2

Q ss_pred             CCCcchhccCCccEEEEece-eeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc---eee
Q 042585          113 SLPQMVLRSKSIKVLTLQNY-KLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV---NVS  187 (286)
Q Consensus       113 ~l~~~~~~~~~L~~L~L~~~-~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~---~~~  187 (286)
                      ..|..+...++|++|.+.+. .++... ..+.++++|+.|+|+++.++.-.- ..+...++|+.|+|++.....   ...
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~~  100 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALESLSWKTV  100 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred             cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc-ccccccccccceeccCCCCcccChhhh
Confidence            44445555667777777653 243221 233456777777777666322111 123456677777776543221   011


Q ss_pred             cccCCceEEecCc
Q 042585          188 SCKNLKHLDLCDG  200 (286)
Q Consensus       188 ~~~~L~~L~l~~~  200 (286)
                      ...+|++|++.++
T Consensus       101 ~~~~l~~L~L~~N  113 (156)
T d2ifga3         101 QGLSLQELVLSGN  113 (156)
T ss_dssp             CSCCCCEEECCSS
T ss_pred             ccccccccccCCC
Confidence            1335666666644

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0022  Score=47.20  Aligned_cols=100  Identities=12%  Similarity=-0.064  Sum_probs=64.6

Q ss_pred             cCCccEEEEeceeeccCCcCcccCCCccEEEcceee----eChHHHHHHHhcCCCcceEEeeecccc----ceeecccCC
Q 042585          121 SKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY----ADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNL  192 (286)
Q Consensus       121 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~----~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L  192 (286)
                      |.....++..+......+.....+++|++|++.+..    ++..+    +.+.++|+.|+++++...    ..|...++|
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L   82 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchh----hccccccCcceeeccccCCcccccccccccc
Confidence            344455666664443322344568899999997553    34433    456899999999977532    223348999


Q ss_pred             ceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585          193 KHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN  226 (286)
Q Consensus       193 ~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~  226 (286)
                      ++|+++++.++.-.  .-....++|++|++++.+
T Consensus        83 ~~L~Ls~N~l~~l~--~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          83 SRLNLSFNALESLS--WKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CEEECCSSCCSCCC--STTTCSCCCCEEECCSSC
T ss_pred             cceeccCCCCcccC--hhhhccccccccccCCCc
Confidence            99999988755311  112345679999999853

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0034  Score=49.18  Aligned_cols=82  Identities=13%  Similarity=0.087  Sum_probs=51.4

Q ss_pred             CCceEEEEEeccCCCcccCCCcc-hhccCCccEEEEeceeecc-CC-cCcccCCCccEEEcceee-eChHHHHHHHhcCC
Q 042585           95 RNVEELEVEHLRRLDTWNSLPQM-VLRSKSIKVLTLQNYKLES-LG-NDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSP  170 (286)
Q Consensus        95 ~~l~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~-~~-~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp  170 (286)
                      .++++|+++...    -..+|.. +..+++|++|+++++.+.. .. ..+.++++++++.+..+. +..... ..+.++|
T Consensus        29 ~~l~~L~Ls~n~----i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~-~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELRFVLTK----LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLP  103 (242)
T ss_dssp             SCCSEEEEESCC----CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT-TSEECCT
T ss_pred             CCCCEEECcCCc----CCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc-ccccccc
Confidence            478888888211    1244443 4568899999999876522 11 234468888888877654 332221 2246788


Q ss_pred             CcceEEeeecc
Q 042585          171 LLQHLEFVRYN  181 (286)
Q Consensus       171 ~Le~L~l~~c~  181 (286)
                      +|+.|++.++.
T Consensus       104 ~L~~l~l~~~~  114 (242)
T d1xwdc1         104 NLQYLLISNTG  114 (242)
T ss_dssp             TCCEEEEESCC
T ss_pred             cccccccchhh
Confidence            99999887653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0073  Score=44.46  Aligned_cols=80  Identities=20%  Similarity=0.226  Sum_probs=57.7

Q ss_pred             ccCCCccEEEcceeeeCh-HHHHHHHhcCCCcceEEeeecccc--ceee--cccCCceEEecCcccCh------hhHHHH
Q 042585          142 VKLLSLRKLHLSDVYADD-QVMNNLFAQSPLLQHLEFVRYNNL--VNVS--SCKNLKHLDLCDGSYTD------EWLNSQ  210 (286)
Q Consensus       142 ~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~--~~~~--~~~~L~~L~l~~~~~~~------~~l~~~  210 (286)
                      ..+|+|++|+|+++.+++ ..+......||+|+.|++++....  ..+.  ...+|+.|.+.++.+..      .....+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            459999999999999554 344555678999999999976432  2211  15679999999876542      234466


Q ss_pred             HhcCCCccEEe
Q 042585          211 ISGLPLLEQLH  221 (286)
Q Consensus       211 ~~~~p~L~~L~  221 (286)
                      ...+|+|+.|+
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            77889999887