Citrus Sinensis ID: 042599

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
AVLPMTMKTAIQLGVLEIMLPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCCVQCNTGI
Secondary Structure (PSIPRED)
ccccHHHHHHHHHcHHHHHcccccccccccHHHHHHHHHHccccccEEEccccccccEEEEEccccccccccccccccHHHHHHHHHccccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccHHHHccccccccccccccccccEEEEccccccEEcccccEEEEEEccccccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccHHHHcccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEEcHHHHHHcccccccccHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHcccccccHHcccEEEEEccccccccccHHHHHHHHHHHcccEEEEEcccccccccEEEEEccccccccccccEEcccccccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
AVLPMTMKTAIQLGVLEimlpknnketPIILDRMLRLLASYSFLTCNlatnikdgsaqrLYGLASvsryffpnedgvslaptLLIIQDkvnmdswackytqhsYLCMKDALLEGFINTLNRYYLKNallegsvphtkaqsGMDAFAAAAKDARMNNLFNQSMHNHTVVEHVsghmfievpnGQALFMKWILSDWDDEECLKILKNCCVQCNTGI
Flexible Loop (DISEMBL)
avlpmtmkTAIQLGVLEIMLPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCCVQCNTGI
Low Complexity Region (SEG)
AVLPMTMKTAIQLGVLEIMLPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMdafaaaakdaRMNNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCCVQCNTGI
Disordered region (IsUnstruct)
*******KTAIQLGVLEIMLPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNRYYLKNALLEGSV***********FAA****ARMNNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCCVQCN***
Disordered Region (DISOPRED)
AVLPMTMKTAIQLGVLEIMLPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCCVQCNT**
Disordered Region (DISEMBL)
AVLPMTMKTAIQLGVLEIMLPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCCVQCNTGI
Disordered Region (DISPRO)
AVLPMTMKTAIQLGVLEIMLPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCCVQCNTGI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AVLPMTMKTAIQLGVLEIMLPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCCVQCNTGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q8LL87	350	Caffeic acid 3-O-methyltr	N/A	no	0.831	0.508	0.358	2e-38
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.915	0.536	0.367	6e-36
Q43047	364	Caffeic acid 3-O-methyltr	N/A	no	0.831	0.489	0.343	1e-35
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.915	0.536	0.359	8e-35
Q9FK25	363	Flavone 3'-O-methyltransf	yes	no	0.831	0.490	0.346	1e-34
Q43609	365	Caffeic acid 3-O-methyltr	N/A	no	0.915	0.536	0.363	3e-34
Q41086	364	Caffeic acid 3-O-methyltr	N/A	no	0.831	0.489	0.343	5e-34
O04385	368	(Iso)eugenol O-methyltran	N/A	no	0.911	0.529	0.375	1e-33
P46484	366	Caffeic acid 3-O-methyltr	N/A	no	0.915	0.535	0.371	2e-33
Q8GU25	365	Caffeic acid 3-O-methyltr	N/A	no	0.911	0.534	0.366	4e-33

>sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1

 Score =  159 bits (401), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/282 (35%), Positives = 130/282 (46%), Gaps = 104/282 (36%)

Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +K+AI+L +LE++                 LP +N E PI+LDR+LRLLA+YS 
Sbjct: 17  SVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPIMLDRILRLLATYSV 76

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           L C L  N+ DG  +RLYGLA V ++   N DGVS+AP LL+ QDKV M+SW        
Sbjct: 77  LDCKL-NNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKVLMESW-------- 127

Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMH 163
                             Y+LK+A+L+G +P  KA  GM AF     D R N +FNQ M 
Sbjct: 128 ------------------YHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNQGMS 168

Query: 164 NHT--------------------------------------------------VVEHVSG 173
           NH+                                                  VVE    
Sbjct: 169 NHSTITMKKILEVYRGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPS 228

Query: 174 H---------MFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           H         MF+ VP G A+FMKWI  DW D+ C K+LKNC
Sbjct: 229 HSGVEHVGGDMFVSVPKGDAIFMKWICHDWSDDHCRKLLKNC 270

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.
Coffea canephora (taxid: 49390)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score =  150 bits (379), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/264 (36%), Positives = 130/264 (49%), Gaps = 68/264 (25%)

Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +KTAI+L +LEIM                 LP  N + P++LDR+LRLLASYS 
Sbjct: 30  SVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSI 89

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           LTC+L  ++ DG  +RLYGLA V ++   NEDGVS++P  L+ QDKV M+SW        
Sbjct: 90  LTCSL-KDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESW-------- 140

Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVP------------HT-----------KAQS 140
              +KDA+LEG I     Y +      G+ P            H+           K   
Sbjct: 141 -YYLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFE 199

Query: 141 GMDAFA--AAAKDARMNNLFN----------------QSMHNHTVVEHVSGHMFIEVPNG 182
           G+ +         A +N + +                +   ++  VEHV G MF+ VPN 
Sbjct: 200 GLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPNA 259

Query: 183 QALFMKWILSDWDDEECLKILKNC 206
            A+FMKWI  DW D  CLK LKNC
Sbjct: 260 DAVFMKWICHDWSDAHCLKFLKNC 283

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43047|COMT3_POPKI Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 130/282 (46%), Gaps = 104/282 (36%)

Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +KTAI+L +LEIM                 LP  N + P++LDR+LRLLASYS 
Sbjct: 29  SVLPMVLKTAIELDLLEIMAKAGPGALLSPSDIASHLPTKNPDAPVMLDRILRLLASYSI 88

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           L C+L  ++ DG  +RLYGLASV ++   NEDGVS++P  L+ QDKV M+SW        
Sbjct: 89  LICSL-RDLPDGKVERLYGLASVCKFLTKNEDGVSVSPLCLMNQDKVLMESW-------- 139

Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMH 163
                             Y+LK+A+LEG +P  KA  GM AF     D R N +FN+ M 
Sbjct: 140 ------------------YHLKDAILEGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMS 180

Query: 164 NHT------VVEHVSG------------------------------------HMFIEVP- 180
           +H+      ++E   G                                    H+  + P 
Sbjct: 181 DHSKMAMKKILESYKGFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPA 240

Query: 181 ----------------NGQALFMKWILSDWDDEECLKILKNC 206
                              A+FMKWI  DW DE CL++LKNC
Sbjct: 241 FPGVENVGGDMFVSVPKADAVFMKWICHDWSDEHCLRLLKNC 282

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  146 bits (369), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 129/264 (48%), Gaps = 68/264 (25%)

Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +KTAI+L +LEIM                 LP  N + P++LDR+LRLLASYS 
Sbjct: 30  SVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSI 89

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           LTC+L  ++ DG  +RLYGLA V ++   NEDGVS++P  L+ QDKV M+SW        
Sbjct: 90  LTCSL-KDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESW-------- 140

Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVP------------HT-----------KAQS 140
              +KDA+L+G I     Y +      G+ P            H+           K   
Sbjct: 141 -YYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFE 199

Query: 141 GMDAFA--AAAKDARMNNLFN----------------QSMHNHTVVEHVSGHMFIEVPNG 182
           G+ +         A +N + +                +   ++  VEHV G MF+ VP  
Sbjct: 200 GLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKA 259

Query: 183 QALFMKWILSDWDDEECLKILKNC 206
            A+FMKWI  DW D  CLK LKNC
Sbjct: 260 DAVFMKWICHDWSDAHCLKFLKNC 283

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 123/280 (43%), Gaps = 102/280 (36%)

Query: 1   AVLPMTMKTAIQLGVLEIM---------------LPKNNKETPIILDRMLRLLASYSFLT 45
           +VLPM +K+A++L +LEIM               LP  N E P++LDR+LRLL SYS LT
Sbjct: 30  SVLPMALKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVMLDRILRLLTSYSVLT 89

Query: 46  CNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYL 105
           C+      DG  +R+YGL  V +Y   NEDGVS+A   L+ QDKV M+SW          
Sbjct: 90  CSNRKLSGDG-VERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESW---------- 138

Query: 106 CMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNH 165
                           Y+LK+A+L+G +P  KA  GM AF     D R N +FN  M NH
Sbjct: 139 ----------------YHLKDAILDGGIPFNKAY-GMSAFEYHGTDPRFNKVFNNGMSNH 181

Query: 166 T--------------------------------------------------VVEHVSGHM 175
           +                                                  V+E    H 
Sbjct: 182 STITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHP 241

Query: 176 FIE---------VPNGQALFMKWILSDWDDEECLKILKNC 206
            IE         VP G A+FMKWI  DW DE C+K LKNC
Sbjct: 242 GIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNC 281

Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

>sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1

 Score =  145 bits (365), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/264 (36%), Positives = 127/264 (48%), Gaps = 68/264 (25%)

Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +K AI+L +LEIM                 LP  N + P++LDRMLRLLASYS 
Sbjct: 30  SVLPMVLKAAIELDLLEIMAKAGPGVFLSPTDIASQLPTKNPDAPVMLDRMLRLLASYSI 89

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           LT +L T + DG  +RLYGL  V ++   NE+GVS+AP  L+ QDKV ++SW        
Sbjct: 90  LTYSLRT-LADGKVERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDKVLLESW-------- 140

Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVP------------HT-----------KAQS 140
              +KDA+LEG I     Y +      G+ P            H+           K   
Sbjct: 141 -YHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMADHSTITMKKILETYKGFE 199

Query: 141 GMDAFA--AAAKDARMNNLFN----------------QSMHNHTVVEHVSGHMFIEVPNG 182
           G+ +         A +N + +                +    +  VEHV G MF+ VP G
Sbjct: 200 GLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDAPQYPGVEHVGGDMFVSVPKG 259

Query: 183 QALFMKWILSDWDDEECLKILKNC 206
            A+FMKWI  DW DE CLK LKNC
Sbjct: 260 DAIFMKWICHDWSDEHCLKFLKNC 283

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Prunus dulcis (taxid: 3755)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q41086|COMT2_POPTM Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1

 Score =  144 bits (363), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 126/282 (44%), Gaps = 104/282 (36%)

Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +KTAI+L +LEIM                 LP  N   P++LDR+LRLLASYS 
Sbjct: 29  SVLPMVLKTAIELDLLEIMAKAGPGALLPPSDIASHLPTKNPNAPVMLDRILRLLASYSI 88

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           L C+L  ++ DG  +RLYGLASV ++   NEDGVS++P  L+ QDKV M+SW        
Sbjct: 89  LICSL-RDLPDGKVERLYGLASVCKFLTRNEDGVSVSPLCLMNQDKVLMESW-------- 139

Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMH 163
                             Y+LK+A+LEG +P  KA  GM AF     D R N +FN+ M 
Sbjct: 140 ------------------YHLKDAILEGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMS 180

Query: 164 NHT------VVEHVSG------------------------------------HMFIEVP- 180
            H+      ++E   G                                    H+  + P 
Sbjct: 181 VHSKMAMKKILETYKGFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPA 240

Query: 181 ----------------NGQALFMKWILSDWDDEECLKILKNC 206
                              A+FMKWI  DW DE CL  LKNC
Sbjct: 241 FPGVENVGGDMFVSVPKADAVFMKWICHDWSDEHCLTFLKNC 282

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|O04385|IEMT_CLABR (Iso)eugenol O-methyltransferase OS=Clarkia breweri GN=IEMT1 PE=1 SV=2

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/266 (37%), Positives = 124/266 (46%), Gaps = 71/266 (26%)

Query: 1   AVLPMTMKTAIQLGVLEIM------------------LPKNNKETPIILDRMLRLLASYS 42
           AVLPM +K AI+L VLEIM                  LP  N E P++LDR+LRLLASYS
Sbjct: 32  AVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYS 91

Query: 43  FLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQH 102
            +T  L   +  G  +RLYGLA V ++   NEDGVSLAP LL   DKV ++ W       
Sbjct: 92  VVTYTL-RELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLTATDKVLLEPW------- 143

Query: 103 SYLCMKDALLEGFINTLNRYYLKNAL---------------------------------- 128
               +KDA+LEG I   N+ Y  N                                    
Sbjct: 144 --FYLKDAILEGGI-PFNKAYGMNEFDYHGTDHRFNKVFNKGMSSNSTITMKKILEMYNG 200

Query: 129 LEGSVPHTKAQSGMDAFAA--AAKDARMNNL-FN-----QSMHNHTVVEHVSGHMFIEVP 180
            EG         G  A A+   AK   +N + F+     Q     + VEH+ G MF  VP
Sbjct: 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVP 260

Query: 181 NGQALFMKWILSDWDDEECLKILKNC 206
            G A+F+KWI  DW DE CLK+LKNC
Sbjct: 261 KGDAIFIKWICHDWSDEHCLKLLKNC 286

Catalyzes the methylation of the para-4-hydroxyl of both eugenol and (iso)eugenol to methyleugenol and isomethyleugenol, respectively. The resulting products are part of a complex mixture of low-molecular-weight volatile compounds emitted by the flowers to attract pollinators.

Clarkia breweri (taxid: 36903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 6

>sp|P46484|COMT1_EUCGU Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/264 (37%), Positives = 128/264 (48%), Gaps = 68/264 (25%)

Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +K AI+L +LEIM                 LP  N E P++LDR+ RLLASYS 
Sbjct: 31  SVLPMVLKAAIELDLLEIMAKAGPGAFLSPGEVAAQLPTQNPEAPVMLDRIFRLLASYSV 90

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           LTC L  N+ DG  +RLYGLA V ++   NEDGVS+A   L+ QDK+ M+SW        
Sbjct: 91  LTCTL-RNLPDGKVERLYGLAPVCKFLVKNEDGVSIAALNLMNQDKILMESW-------Y 142

Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVP------------HT-----------KAQS 140
           YL  KDA+LEG I     Y +      G+ P            H+           K   
Sbjct: 143 YL--KDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKIFNRGMSDHSTITMKKILETYKGFE 200

Query: 141 GMDAFA--AAAKDARMNNLFNQ--SMHN------HTV--------VEHVSGHMFIEVPNG 182
           G++          A ++ +  +  SM        H +        V+HV G MF+ VP G
Sbjct: 201 GLETVVDVGGGTGAVLSMIVAKYPSMKGINFDLPHVIEDAPPLPGVKHVGGDMFVSVPKG 260

Query: 183 QALFMKWILSDWDDEECLKILKNC 206
            A+FMKWI  DW D+ C K LKNC
Sbjct: 261 DAIFMKWICHDWSDDHCAKFLKNC 284

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Eucalyptus gunnii (taxid: 3933)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8GU25|COMT1_ROSCH Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1

 Score =  141 bits (355), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/265 (36%), Positives = 128/265 (48%), Gaps = 70/265 (26%)

Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +K AI+L +LEIM                 LP  N E P++LDRMLRLLASYS 
Sbjct: 30  SVLPMVLKAAIELDLLEIMAKAGPGAFLSPNDLASQLPTKNPEAPVMLDRMLRLLASYSI 89

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           LT +L T + DG  +RLYGL  V ++   NEDGVS+A   L+ QDKV ++SW        
Sbjct: 90  LTYSLRT-LPDGKVERLYGLGPVCKFLTKNEDGVSIAALCLMNQDKVLVESW-------- 140

Query: 104 YLCMKDALLEGFINTLNRYYLKNAL-LEGSVP------------HT-----------KAQ 139
              +KDA+L+G I   N+ Y   A    G+ P            H+           K  
Sbjct: 141 -YHLKDAVLDGGI-PFNKAYGMTAFDYHGTDPRFNKVFNKGMADHSTITMKKILETYKGF 198

Query: 140 SGMDAFA--AAAKDARMNNLFN----------------QSMHNHTVVEHVSGHMFIEVPN 181
            G+ +         A +N + +                +    +  V+HV G MF+ VP 
Sbjct: 199 EGLTSIVDVGGGTGAVVNMIVSKYPSIKGINFDLPHVIEDAPQYPGVQHVGGDMFVSVPK 258

Query: 182 GQALFMKWILSDWDDEECLKILKNC 206
           G A+FMKWI  DW DE CLK LKNC
Sbjct: 259 GDAIFMKWICHDWSDEHCLKFLKNC 283

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Rosa chinensis (taxid: 74649)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
56605372	364	caffeate O-methyltransferase [Picea abie	0.822	0.483	0.364	6e-37
29839361	350	RecName: Full=Caffeic acid 3-O-methyltra	0.831	0.508	0.358	8e-37
116782394	364	unknown [Picea sitchensis]	0.822	0.483	0.364	9e-37
22652500	350	caffeic acid O-methyltransferase [Coffea	0.831	0.508	0.354	2e-36
116779753	365	unknown [Picea sitchensis]	0.822	0.482	0.357	3e-36
346644467	364	caffeic acid O-3-methyltransferase [Pinu	0.822	0.483	0.353	1e-35
148910620	365	unknown [Picea sitchensis]	0.822	0.482	0.355	2e-35
312283309	364	unnamed protein product [Thellungiella h	0.836	0.491	0.346	5e-35
225453640	359	PREDICTED: quercetin 3-O-methyltransfera	0.813	0.484	0.347	8e-35
29839288	365	RecName: Full=Caffeic acid 3-O-methyltra	0.915	0.536	0.367	3e-34

>gi|56605372|emb|CAI30878.1| caffeate O-methyltransferase [Picea abies] gi|116785470|gb|ABK23738.1| unknown [Picea sitchensis]

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 102/280 (36%), Positives = 133/280 (47%), Gaps = 104/280 (37%)

Query: 3   LPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSFLT 45
           LPM MK AI+L VL+I+                 +P  N +  I LDR+LR+LAS+S L+
Sbjct: 32  LPMGMKAAIELDVLQIIANAGNGVQLSPRQIVAHIPTTNPDAAITLDRILRVLASHSVLS 91

Query: 46  CNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYL 105
           C++ T+ ++G A+RLYGL  + +Y   N+DGVSLAP +L+ QDKV MDSW          
Sbjct: 92  CSVTTD-ENGKAERLYGLTPLCKYLVKNQDGVSLAPLVLMNQDKVLMDSW---------- 140

Query: 106 CMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNH 165
                           YYLK+A+LEGS P TKA  GM+AF   AKD R N +FN+ M  H
Sbjct: 141 ----------------YYLKDAVLEGSQPFTKAH-GMNAFEYPAKDQRFNRVFNRGMSEH 183

Query: 166 TVV------------------------------------EHVSG---------------- 173
           + +                                     H+SG                
Sbjct: 184 STMLMNKILDTYQGFKEVQELVDVGGGVGSTLNLIVSRYPHISGINFDMPHVVTDAPHYP 243

Query: 174 -------HMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
                   MF  VP GQA+FMKWIL DW D+ C K+LKNC
Sbjct: 244 AVKHVGGDMFDSVPTGQAIFMKWILHDWSDDHCRKLLKNC 283

Source: Picea abies

Species: Picea abies

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29839361|sp|Q8LL87.1|COMT1_COFCA RecName: Full=Caffeic acid 3-O-methyltransferase; Short=CAOMT; Short=COMT; AltName: Full=S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase gi|22652502|gb|AAN03727.1| caffeic acid O-methyltransferase [Coffea canephora]

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/282 (35%), Positives = 130/282 (46%), Gaps = 104/282 (36%)

Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +K+AI+L +LE++                 LP +N E PI+LDR+LRLLA+YS 
Sbjct: 17  SVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPIMLDRILRLLATYSV 76

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           L C L  N+ DG  +RLYGLA V ++   N DGVS+AP LL+ QDKV M+SW        
Sbjct: 77  LDCKL-NNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKVLMESW-------- 127

Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMH 163
                             Y+LK+A+L+G +P  KA  GM AF     D R N +FNQ M 
Sbjct: 128 ------------------YHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNQGMS 168

Query: 164 NHT--------------------------------------------------VVEHVSG 173
           NH+                                                  VVE    
Sbjct: 169 NHSTITMKKILEVYRGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPS 228

Query: 174 H---------MFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           H         MF+ VP G A+FMKWI  DW D+ C K+LKNC
Sbjct: 229 HSGVEHVGGDMFVSVPKGDAIFMKWICHDWSDDHCRKLLKNC 270

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116782394|gb|ABK22490.1| unknown [Picea sitchensis]

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 102/280 (36%), Positives = 133/280 (47%), Gaps = 104/280 (37%)

Query: 3   LPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSFLT 45
           LPM MK AI+L VL+I+                 +P  N +  I LDR+LR+LAS+S L+
Sbjct: 32  LPMGMKAAIELDVLQIIANAGNGVQLSPRQIVAHIPTTNPDAAITLDRILRVLASHSVLS 91

Query: 46  CNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYL 105
           C++ T+ ++G A+RLYGL  + +Y   N+DGVSLAP +L+ QDKV MDSW          
Sbjct: 92  CSVTTD-ENGKAERLYGLTPLCKYLVMNQDGVSLAPLVLMNQDKVLMDSW---------- 140

Query: 106 CMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNH 165
                           YYLK+A+LEGS P TKA  GM+AF   AKD R N +FN+ M  H
Sbjct: 141 ----------------YYLKDAVLEGSQPFTKAH-GMNAFEYPAKDQRFNRVFNRGMSEH 183

Query: 166 TVV------------------------------------EHVSG---------------- 173
           + +                                     H+SG                
Sbjct: 184 STMLMNKILDTYQGFKEVQELVDVGGGVGSTLNLIVSRYPHISGINFDMPHVVTDAPHYP 243

Query: 174 -------HMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
                   MF  VP GQA+FMKWIL DW D+ C K+LKNC
Sbjct: 244 AVKHVGGDMFDSVPTGQAIFMKWILHDWSDDHCRKLLKNC 283

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22652500|gb|AAN03726.1| caffeic acid O-methyltransferase [Coffea canephora]

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 130/282 (46%), Gaps = 104/282 (36%)

Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +K+AI+L +LE++                 LP +N E PI+LDR+LRLLA+YS 
Sbjct: 17  SVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPIMLDRILRLLATYSV 76

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           L C L  N+ DG  +RLYGLA V ++   N DGVS+AP LL+ QDKV M+SW        
Sbjct: 77  LDCKL-NNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKVLMESW-------- 127

Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMH 163
                             Y+LK+A+L+G +P  KA  GM AF     D R N +FNQ M 
Sbjct: 128 ------------------YHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNQGMS 168

Query: 164 NHT--------------------------------------------------VVEHVSG 173
           NH+                                                  VVE    
Sbjct: 169 NHSTITMKKILEVYRGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPS 228

Query: 174 H---------MFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           H         MF+ VP G A+FMKWI  DW D+ C K+L+NC
Sbjct: 229 HPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDDHCRKLLRNC 270

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779753|gb|ABK21417.1| unknown [Picea sitchensis]

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 134/280 (47%), Gaps = 104/280 (37%)

Query: 3   LPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSFLT 45
           LPM MK A++L VL+I+                 +P  N +  I LDR+LR+LAS+S L+
Sbjct: 33  LPMAMKAAVELDVLQIIANAGNGVQLSPRQIVAHIPTTNPDAAITLDRILRVLASHSVLS 92

Query: 46  CNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYL 105
           C++ T+ ++G A+RLYGL  + +Y   N+DGVSLAP +LI QDKV M++W          
Sbjct: 93  CSVTTD-ENGKAERLYGLTPLCKYLVKNQDGVSLAPLVLINQDKVFMETW---------- 141

Query: 106 CMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNH 165
                           YYLK+A+LEGS P TKA  GM+AF   A D R N LFN+SM  H
Sbjct: 142 ----------------YYLKDAVLEGSQPFTKAH-GMNAFEYTAMDQRFNRLFNRSMSGH 184

Query: 166 TVV------------------------------------EHVSG---------------- 173
           + +                                     H+SG                
Sbjct: 185 STMLMNKIMDSYQGFKEVQELVDVGGGVGSTLNLIISRYPHISGINFDMPHVLADAPHYP 244

Query: 174 -------HMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
                   MF  VP GQA+FMKWIL +W D+ C+K+LKNC
Sbjct: 245 AVRHVGGDMFDGVPTGQAIFMKWILHNWSDDRCVKLLKNC 284

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346644467|emb|CCC55423.1| caffeic acid O-3-methyltransferase [Pinus pinaster]

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 133/280 (47%), Gaps = 104/280 (37%)

Query: 3   LPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSFLT 45
           LPM MK AI+L VL+I+                 +P  N +  I LDR+LR LAS+S L+
Sbjct: 32  LPMAMKAAIELDVLQIIANAGNGVQLSPRQIVAHIPTTNPDAAITLDRILRALASHSVLS 91

Query: 46  CNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYL 105
           C++ T+ ++G A+RLYGL  + +Y   N+DGVSLAP +L+ QDKV M+SW          
Sbjct: 92  CSVTTD-ENGKAERLYGLTPLCKYLVKNQDGVSLAPLVLMNQDKVLMESW---------- 140

Query: 106 CMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNH 165
                           YYLK+A+L+GS P TKA  GM+AF   A D R N +FN+ M  H
Sbjct: 141 ----------------YYLKDAVLDGSQPFTKAH-GMNAFEYPAMDQRFNRVFNRGMSEH 183

Query: 166 TVV------------------------------------EHVSG---------------- 173
           + +                                     H+SG                
Sbjct: 184 STLLMNKILDTYEGFKEVQELVDVGGGVGSTLNLIVSKYPHISGINFDMPHVVADAPHYP 243

Query: 174 -------HMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
                   MF  VP+GQA+FMKWIL DW D+ CL++LKNC
Sbjct: 244 AVKHVGGDMFDSVPSGQAIFMKWILHDWSDDHCLRLLKNC 283

Source: Pinus pinaster

Species: Pinus pinaster

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148910620|gb|ABR18380.1| unknown [Picea sitchensis]

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 134/281 (47%), Gaps = 105/281 (37%)

Query: 3   LPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSFLT 45
           LPM MK AI+L VL+I+                 +P  N +  I LDR+LR+LAS+S L+
Sbjct: 32  LPMGMKAAIELDVLQIIANAGNGVQLSPRQIVAHIPTTNPDAAITLDRILRVLASHSVLS 91

Query: 46  CNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYL 105
           C++ T+ ++G A+RLYGL  + +Y   N+DGVSLAP +L+ QDKV M++W          
Sbjct: 92  CSVTTD-ENGKAERLYGLTPLCKYLVNNQDGVSLAPLVLMNQDKVLMETW---------- 140

Query: 106 CMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNH 165
                           YYLK+A+LEGS P TKA  GM+AF   A D R N LFN+SM  +
Sbjct: 141 ----------------YYLKDAVLEGSQPFTKAH-GMNAFEYTAMDQRFNRLFNRSMSEY 183

Query: 166 TVV------------------------------------EHVSG---------------- 173
           +++                                     H+SG                
Sbjct: 184 SIMLMNKIMDSYQGFKEVLKLVDVGGGVGSTLNLIISRYPHISGINFDMPHVLADAPHYP 243

Query: 174 --------HMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
                    MF  VP GQA+FMKWIL DW D+ C K+LKNC
Sbjct: 244 AAVKHVGGDMFDSVPTGQAIFMKWILHDWSDDHCRKLLKNC 284

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283309|dbj|BAJ34520.1| unnamed protein product [Thellungiella halophila]

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 125/280 (44%), Gaps = 101/280 (36%)

Query: 1   AVLPMTMKTAIQLGVLEIM---------------LPKNNKETPIILDRMLRLLASYSFLT 45
           +VLPM +K+A++L +LEIM               LP  N E P++LDR+LRLL +YS LT
Sbjct: 30  SVLPMALKSALELDLLEIMAKNTKPMSPSEIASHLPTKNPEAPVMLDRILRLLTAYSVLT 89

Query: 46  CNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYL 105
           C+  T       +RLYGL  V +Y   NEDGVS+A   L+ QDKV M+SW          
Sbjct: 90  CSNRTLPNGDGVERLYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESW---------- 139

Query: 106 CMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNH 165
                           Y+LK+A+L+G +P  KA  GM AF    KD R N +FN  M NH
Sbjct: 140 ----------------YHLKDAILDGGIPFNKAY-GMSAFEYHGKDLRFNTVFNNGMSNH 182

Query: 166 T--------------------------------------------------VVEHVSGH- 174
           +                                                  V+E  + H 
Sbjct: 183 STITMKKILETYKGFEGLTSLVDVGGGIGATLKMILSKYPNLKGINFDLPHVIEEATSHP 242

Query: 175 --------MFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
                   MF+ VP G A+FMKWI  DW DE C+K LKNC
Sbjct: 243 GIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNC 282

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453640|ref|XP_002267179.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera] gi|147785074|emb|CAN75449.1| hypothetical protein VITISV_028011 [Vitis vinifera]

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/279 (34%), Positives = 126/279 (45%), Gaps = 105/279 (37%)

Query: 1   AVLPMTMKTAIQLGVLEIM--------------LPKNNKETPIILDRMLRLLASYSFLTC 46
           +VLPM M+T+I+LG+ +I+              LP  N E PI+LDRML LL ++S L+C
Sbjct: 33  SVLPMVMQTSIELGLFDIIAKLGQASASEIASRLPTKNPEAPIMLDRMLYLLTTHSVLSC 92

Query: 47  NLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLC 106
           +      DG  +R+Y L  VS+YF  N+DGVS  P L +IQDKV MDSW+          
Sbjct: 93  SAI----DGD-ERVYALTPVSKYFASNQDGVSFGPLLALIQDKVFMDSWS---------- 137

Query: 107 MKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHT 166
                            LKNA++EG +P  +   G  AF    KD R N +FN +M NHT
Sbjct: 138 ----------------QLKNAIIEGGIPFNRVH-GSHAFEYPGKDPRFNQVFNTAMFNHT 180

Query: 167 --------------------------------------------------VVEH------ 170
                                                             V+EH      
Sbjct: 181 TIIVNKILESYKGFEHLTRVVDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAFPG 240

Query: 171 ---VSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
              + G MF  VP G A+FMKWIL DW D+ CLK+LKNC
Sbjct: 241 VEHIGGDMFESVPKGDAIFMKWILHDWSDDHCLKLLKNC 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29839288|sp|Q43046.1|COMT1_POPKI RecName: Full=Caffeic acid 3-O-methyltransferase 1; Short=CAOMT-1; Short=COMT-1; AltName: Full=S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase 1 gi|762870|dbj|BAA08558.1| caffeic acid O-methyltransferase [Populus kitakamiensis]

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/264 (36%), Positives = 130/264 (49%), Gaps = 68/264 (25%)

Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +KTAI+L +LEIM                 LP  N + P++LDR+LRLLASYS 
Sbjct: 30  SVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSI 89

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           LTC+L  ++ DG  +RLYGLA V ++   NEDGVS++P  L+ QDKV M+SW        
Sbjct: 90  LTCSL-KDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESW-------- 140

Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVP------------HT-----------KAQS 140
              +KDA+LEG I     Y +      G+ P            H+           K   
Sbjct: 141 -YYLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFE 199

Query: 141 GMDAFA--AAAKDARMNNLFN----------------QSMHNHTVVEHVSGHMFIEVPNG 182
           G+ +         A +N + +                +   ++  VEHV G MF+ VPN 
Sbjct: 200 GLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPNA 259

Query: 183 QALFMKWILSDWDDEECLKILKNC 206
            A+FMKWI  DW D  CLK LKNC
Sbjct: 260 DAVFMKWICHDWSDAHCLKFLKNC 283

Source: Populus kitakamiensis

Species: Populus sieboldii x Populus grandidentata

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.574	0.338	0.433	1.4e-34
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.434	0.252	0.457	1.1e-30
TAIR|locus:2015223	381	AT1G63140 [Arabidopsis thalian	0.177	0.099	0.736	3.4e-30
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.182	0.102	0.769	2.4e-29
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.574	0.341	0.407	4.1e-29
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.182	0.102	0.769	9.5e-29
TAIR|locus:2038026	352	AT1G33030 [Arabidopsis thalian	0.5	0.303	0.398	4.3e-27
TAIR|locus:2034016	363	AT1G51990 [Arabidopsis thalian	0.182	0.107	0.615	1.8e-26
TAIR|locus:2030081	367	IGMT5 "indole glucosinolate O-	0.182	0.106	0.641	2.5e-26
UNIPROTKB|A8QW52	376	EOMT "Eugenol O-methyltransfer	0.182	0.103	0.615	4.3e-26

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
 Identities = 65/150 (43%), Positives = 87/150 (58%)

Query:     1 AVLPMTMKTAIQLGVLEIM---------------LPKNNKETPIILDRMLRLLASYSFLT 45
             +VLPM +K+A++L +LEIM               LP  N E P++LDR+LRLL SYS LT
Sbjct:    30 SVLPMALKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVMLDRILRLLTSYSVLT 89

Query:    46 CNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYL 105
             C+      DG  +R+YGL  V +Y   NEDGVS+A   L+ QDKV M+SW   Y  H   
Sbjct:    90 CSNRKLSGDG-VERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESW---Y--H--- 140

Query:   106 CMKDALLEGFINTLNRYYLKNAL-LEGSVP 134
              +KDA+L+G I   N+ Y  +A    G+ P
Sbjct:   141 -LKDAILDGGI-PFNKAYGMSAFEYHGTDP 168

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 175 (66.7 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
 Identities = 48/105 (45%), Positives = 61/105 (58%)

Query:    20 LP-KNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVS 78
             LP K N     ++DRMLRLLASY+ + C +     DG   R Y  A V ++  PNEDGVS
Sbjct:    69 LPSKANPAAADMVDRMLRLLASYNVVRCEMEEGA-DGKLSRRYAAAPVCKWLTPNEDGVS 127

Query:    79 LAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNRYY 123
             +A   L+ QDKV M+SW   Y    YL  KDA+L+G I   N+ Y
Sbjct:   128 MAALALMNQDKVLMESW---Y----YL--KDAVLDGGI-PFNKAY 162

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2015223 AT1G63140 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 3.4e-30, Sum P(4) = 3.4e-30
 Identities = 28/38 (73%), Positives = 32/38 (84%)

Query:   168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKN 205
             VEHVSG MF E+P G A+FMKWIL DW DE+C+KILKN
Sbjct:   262 VEHVSGDMFKEIPKGDAIFMKWILHDWTDEDCVKILKN 299

GO:0005737 "cytoplasm" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 2.4e-29, Sum P(3) = 2.4e-29
 Identities = 30/39 (76%), Positives = 34/39 (87%)

Query:   168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
             V+HVSG MFIEVP G A+FMKWIL DW DE+C+KILKNC
Sbjct:   262 VKHVSGDMFIEVPKGDAIFMKWILHDWGDEDCIKILKNC 300

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 204 (76.9 bits), Expect = 4.1e-29, Sum P(2) = 4.1e-29
 Identities = 62/152 (40%), Positives = 85/152 (55%)

Query:     1 AVLPMTMKTAIQLGVLEIMLPKNNKE-TPI----------------ILDRMLRLLASYSF 43
             ++LPMT+K AI+LG+LE ++    K  TP                 ++DRMLRLLASY+ 
Sbjct:    27 SILPMTLKNAIELGLLETLVAAGGKLLTPAEVAAKLPSTANPAAADMVDRMLRLLASYNV 86

Query:    44 LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
             ++C +    KDG   R Y  A V ++  PNEDGVS+A   L+ QDKV M+SW   Y    
Sbjct:    87 VSCTMEEG-KDGRLSRRYRAAPVCKFLTPNEDGVSMAALALMNQDKVLMESW---Y---- 138

Query:   104 YLCMKDALLEGFINTLNRYYLKNAL-LEGSVP 134
             YL  KDA+L+G I   N+ Y  +A    G+ P
Sbjct:   139 YL--KDAVLDGGI-PFNKAYGMSAFEYHGTDP 167

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 9.5e-29, Sum P(3) = 9.5e-29
 Identities = 30/39 (76%), Positives = 34/39 (87%)

Query:   168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
             VEHVSG MF+EVP G A+FMKWIL DW DE+C+KILKNC
Sbjct:   262 VEHVSGDMFVEVPKGDAVFMKWILHDWGDEDCIKILKNC 300

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
 Identities = 55/138 (39%), Positives = 80/138 (57%)

Query:     1 AVLPMTMKTAIQLGVLEIML---PKN--------NKETP-----IILDRMLRLLASYSFL 44
             +VLPM +KTAI LG+ +I+    P +        + ET       +++R+LR LASYS L
Sbjct:    17 SVLPMVLKTAIDLGLFDILAESGPSSASQIFSLLSNETKKHHDSSLVNRILRFLASYSIL 76

Query:    45 TCNLATNIKDGSAQRLYGLASVSRYFFPNEDGV-SLAPTLLIIQDKVNMDSWACKYTQHS 103
             TC+++T  + G    +YGLA V++YF  N++G  SLAP + + QDKV  D W   Y    
Sbjct:    77 TCSVST--EHGEPFAIYGLAPVAKYFTKNQNGGGSLAPMVNLFQDKVVTDMW---YN--- 128

Query:   104 YLCMKDALLEG---FINT 118
                +KD++LEG   F NT
Sbjct:   129 ---LKDSVLEGGLPFNNT 143

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
 Identities = 24/39 (61%), Positives = 32/39 (82%)

Query:   168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
             VEH+ G MF E+P G+ + MKWIL DW+DE+C++ILKNC
Sbjct:   243 VEHIGGDMFDEIPRGEVILMKWILHDWNDEKCVEILKNC 281

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2030081 IGMT5 "indole glucosinolate O-methyltransferase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 2.5e-26, Sum P(4) = 2.5e-26
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query:   168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
             VEHV+G MF++VP G A+ +K IL DW DE+C KILKNC
Sbjct:   246 VEHVAGDMFVDVPKGDAILLKRILHDWTDEDCEKILKNC 284

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|A8QW52 EOMT "Eugenol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 150 (57.9 bits), Expect = 4.3e-26, Sum P(4) = 4.3e-26
 Identities = 24/39 (61%), Positives = 32/39 (82%)

Query:   168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
             VEHV+G+MF  +P G A+ +KWIL +W D+EC+KILKNC
Sbjct:   256 VEHVAGNMFDNIPRGDAIILKWILHNWGDKECVKILKNC 294

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	3e-24
pfam08100	50	pfam08100, Dimerisation, Dimerisation domain	1e-07

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score = 95.8 bits (239), Expect = 3e-24
 Identities = 49/208 (23%), Positives = 67/208 (32%), Gaps = 86/208 (41%)

Query: 58  QRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFIN 117
              YGL   S+     ED  SLAP LL+  D   ++SW                      
Sbjct: 4   GEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESW---------------------- 41

Query: 118 TLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHT----------- 166
                +LK+A+ EG  P  +A  GM  F     D   N +FN++M  H+           
Sbjct: 42  ----AHLKDAVREGGPPFERAF-GMPFFEYLGADPEFNRVFNRAMAAHSRLVMKKILETA 96

Query: 167 ---------------------------------------VVEHVSGH---------MFIE 178
                                                  V+                F  
Sbjct: 97  FDFSGLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFES 156

Query: 179 VPNGQALFMKWILSDWDDEECLKILKNC 206
           VP   A+ +KW+L DW DE+C+KILK C
Sbjct: 157 VPEADAILLKWVLHDWSDEDCVKILKRC 184

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 15/50 (30%)

Query: 5  MTMKTAIQLGVLEIM---------------LPKNNKETPIILDRMLRLLA 39
          M +K AI+LG+ +I+               LP  N E P++LDR+LRLLA
Sbjct: 1  MVLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50

This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.98
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.96
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.94
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	98.28
PRK06922	677	hypothetical protein; Provisional	97.85
TIGR00740	239	methyltransferase, putative. A simple BLAST search	97.62
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.47
PLN03075	296	nicotianamine synthase; Provisional	97.45
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	97.34
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.12
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	97.01
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	96.91
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	96.85
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	96.85
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	96.7
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.67
TIGR03438	301	probable methyltransferase. This model represents	96.64
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	96.57
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	96.55
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	96.31
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.28
PLN02490	340	MPBQ/MSBQ methyltransferase	96.27
PRK11207	197	tellurite resistance protein TehB; Provisional	96.26
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.22
PLN02233	261	ubiquinone biosynthesis methyltransferase	96.05
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	95.97
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	95.94
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	95.93
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	95.75
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	95.6
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	95.57
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	95.54
PRK08317	241	hypothetical protein; Provisional	95.46
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	95.34
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	95.28
PLN02336	475	phosphoethanolamine N-methyltransferase	95.21
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	95.09
PLN02232	160	ubiquinone biosynthesis methyltransferase	94.97
PLN02244	340	tocopherol O-methyltransferase	94.86
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	94.8
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	94.64
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	94.54
PRK12335	287	tellurite resistance protein TehB; Provisional	94.43
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	94.29
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	94.05
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	94.04
PLN02336	475	phosphoethanolamine N-methyltransferase	94.01
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	93.87
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	93.67
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	93.08
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	93.06
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	93.05
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	92.93
TIGR00452	314	methyltransferase, putative. Known examples to dat	92.47
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	92.32
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	92.23
PRK10258	251	biotin biosynthesis protein BioC; Provisional	92.21
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	92.14
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	92.02
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	91.92
PLN02366	308	spermidine synthase	91.76
PRK13255	218	thiopurine S-methyltransferase; Reviewed	91.7
COG1414	246	IclR Transcriptional regulator [Transcription]	91.61
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	91.44
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	91.21
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	90.73
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	90.71
PRK06202	232	hypothetical protein; Provisional	90.37
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	90.32
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	90.29
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	90.0
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	89.93
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	89.82
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	89.79
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	89.79
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	89.47
PRK05785	226	hypothetical protein; Provisional	89.34
PRK11569	274	transcriptional repressor IclR; Provisional	89.12
PRK04457	262	spermidine synthase; Provisional	89.09
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	89.08
PLN02585	315	magnesium protoporphyrin IX methyltransferase	89.08
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	88.77
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	88.38
PRK13256	226	thiopurine S-methyltransferase; Reviewed	87.78
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	87.68
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	87.07
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	87.06
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	85.88
PF13463	68	HTH_27: Winged helix DNA-binding domain; PDB: 3GFL	85.76
PRK00811	283	spermidine synthase; Provisional	85.75
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	85.63
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	85.52
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	85.41
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	85.09
smart00529	96	HTH_DTXR Helix-turn-helix diphteria tox regulatory	85.01
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	84.81
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	84.69
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	84.6
COG3315	297	O-Methyltransferase involved in polyketide biosynt	83.82
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	83.57
PRK01581	374	speE spermidine synthase; Validated	82.92
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	82.57
PF14394	171	DUF4423: Domain of unknown function (DUF4423)	82.35
PF13601	80	HTH_34: Winged helix DNA-binding domain; PDB: 1UB9	82.14
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	81.61
COG3432	95	Predicted transcriptional regulator [Transcription	80.69
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	80.68
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	80.57
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	80.47
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	80.16

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.98  E-value=8.3e-32  Score=225.53  Aligned_cols=205  Identities=36%  Similarity=0.648  Sum_probs=159.6

Q ss_pred             hhhHHHHHHHHhCchhHH-----------cCC--CCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcc
Q 042599            2 VLPMTMKTAIQLGVLEIM-----------LPK--NNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSR   68 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L-----------LA~--~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~   68 (214)
                      ..+++|++|+||||||+|           ++.  +.+.++..+.|+||.|++.+++++...     + .. .|+++|+++
T Consensus        18 ~~~~~lk~A~eL~v~d~l~~~~~p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~-----~-~~-~Y~~~~~~~   90 (342)
T KOG3178|consen   18 ALPMVLKAACELGVFDILANAGSPSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLV-----G-GE-VYSATPVCK   90 (342)
T ss_pred             hhHHHHHHHHHcChHHHHHhCCCHHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeee-----c-ce-eeeccchhh
Confidence            468999999999999999           223  556899999999999999999998631     1 13 899999999


Q ss_pred             ccCCCCCCCchhhHHhhhhchhhhhhhc--------------c--cCCcchhhhcchhhHhhHHhhhhhcc--HHHHHh-
Q 042599           69 YFFPNEDGVSLAPTLLIIQDKVNMDSWA--------------C--KYTQHSYLCMKDALLEGFINTLNRYY--LKNALL-  129 (214)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~~-  129 (214)
                      .+..++.+.|+++++....++.....|.              +  +...|+|...++...+.|+++|.+..  +...+. 
T Consensus        91 ~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~  170 (342)
T KOG3178|consen   91 YFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILE  170 (342)
T ss_pred             hheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhh
Confidence            8875554568888887655555554442              1  23578888888888888999986511  111121 


Q ss_pred             --cC---CCceEEccC--CccHHHHHHhCCC-------chHHHHhhccCCCceEEecCCCCcccCccceeeeehhccCCC
Q 042599          130 --EG---SVPHTKAQS--GMDAFAAAAKDAR-------MNNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWD  195 (214)
Q Consensus       130 --~g---~~~~~dvgG--G~~~~~~~~~~P~-------l~~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l~~ILHdw~  195 (214)
                        +|   ....+|+||  |...-.++.++|.       ++.++..+....+.|+++.||||...|+||+|+|+||||||+
T Consensus       171 ~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwt  250 (342)
T KOG3178|consen  171 VYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWT  250 (342)
T ss_pred             hhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCC
Confidence              23   456899998  6677777778874       467777666542679999999997799999999999999999


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      |++|++||+||+++|+||
T Consensus       251 DedcvkiLknC~~sL~~~  268 (342)
T KOG3178|consen  251 DEDCVKILKNCKKSLPPG  268 (342)
T ss_pred             hHHHHHHHHHHHHhCCCC
Confidence            999999999999999997

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.96  E-value=1.6e-29  Score=207.27  Aligned_cols=155  Identities=23%  Similarity=0.391  Sum_probs=121.0

Q ss_pred             ccceecchhccccCCCCCCCchhhHHhhhhchhhhhhhcc----------------cCCcchhhhcchhhHhhHHhhhhh
Q 042599           58 QRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWAC----------------KYTQHSYLCMKDALLEGFINTLNR  121 (214)
Q Consensus        58 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~p~~~~~f~~~m~~  121 (214)
                      +++|+||++|+.|+.+++..++.+++.+...+..+.+|..                +.++|+|+.++|+..+.|+.+|..
T Consensus         3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~   82 (241)
T PF00891_consen    3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAE   82 (241)
T ss_dssp             TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHH
T ss_pred             CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHh
Confidence            7899999999999888764567776665445555555521                456899999999999999999976


Q ss_pred             ccH--H-HHHh-----cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCcccCccce
Q 042599          122 YYL--K-NALL-----EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFIEVPNGQA  184 (214)
Q Consensus       122 ~~~--~-~~~~-----~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~~~P~~d~  184 (214)
                      ...  . ..+.     ++...++||||  |..+.++++++|++       |.|++.+.. .+||++++||||+++|.+|+
T Consensus        83 ~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-~~rv~~~~gd~f~~~P~~D~  161 (241)
T PF00891_consen   83 YSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-ADRVEFVPGDFFDPLPVADV  161 (241)
T ss_dssp             HHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-TTTEEEEES-TTTCCSSESE
T ss_pred             hhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-ccccccccccHHhhhccccc
Confidence            211  1 1221     23356999998  77788999999976       677776666 78999999999999999999


Q ss_pred             eeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          185 LFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       185 y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |+|++|||||+|++|++||+|+++||+||
T Consensus       162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg  190 (241)
T PF00891_consen  162 YLLRHVLHDWSDEDCVKILRNAAAALKPG  190 (241)
T ss_dssp             EEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred             eeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999987

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.94  E-value=1.1e-26  Score=196.90  Aligned_cols=201  Identities=13%  Similarity=0.160  Sum_probs=139.0

Q ss_pred             hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599            2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP   72 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~   72 (214)
                      +..++|++|++|||||+|         ||+++|++++.++|+||+|+++|+|++.          +++|++|+.|+.++.
T Consensus         2 ~~~~~l~aa~~Lglfd~L~~gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~----------~~~y~~t~~~~~~l~   71 (306)
T TIGR02716         2 IEFSCMKAAIELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE----------DGKWSLTEFADYMFS   71 (306)
T ss_pred             chHHHHHHHHHcCcHHHHhcCCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEec----------CCcEecchhHHhhcc
Confidence            357899999999999999         9999999999999999999999999985          689999999998776


Q ss_pred             CCCCC---chhhHHhhhhchhhhhhhc------ccCCcchhhhcchhh---HhhHHhhhh-hc--cHHHHHh-----cCC
Q 042599           73 NEDGV---SLAPTLLIIQDKVNMDSWA------CKYTQHSYLCMKDAL---LEGFINTLN-RY--YLKNALL-----EGS  132 (214)
Q Consensus        73 ~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~p~~---~~~f~~~m~-~~--~~~~~~~-----~g~  132 (214)
                      +++..   ++.+....... .....|.      .+++.|+.....|+.   ...|...|. ..  ...+.+.     .+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  150 (306)
T TIGR02716        72 PTPKEPNLHQTPVAKAMAF-LADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKLDGV  150 (306)
T ss_pred             CCccchhhhcCchHHHHHH-HHHHHHHhHHHHhcCCcccccccCCCCCCHHHHHhHHHHHHhcchhHHHHHHHHcCCCCC
Confidence            65421   12233222100 0001121      122223322222221   123333332 11  1122221     233


Q ss_pred             CceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCc-ccCccceeeeehhccCCCh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFI-EVPNGQALFMKWILSDWDD  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~-~~P~~d~y~l~~ILHdw~d  196 (214)
                      ..++|+||  |..+..+++++|++       +.+++.+..      ..+||+++++|||+ ++|.+|+|++++|||+|++
T Consensus       151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~  230 (306)
T TIGR02716       151 KKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANE  230 (306)
T ss_pred             CEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCCh
Confidence            56999998  66677899999975       345544322      24689999999995 6777899999999999999


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      ++|.+||++++++|+||
T Consensus       231 ~~~~~il~~~~~~L~pg  247 (306)
T TIGR02716       231 QLSTIMCKKAFDAMRSG  247 (306)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999999997

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=98.28  E-value=4.9e-07  Score=55.93  Aligned_cols=35  Identities=37%  Similarity=0.737  Sum_probs=29.8

Q ss_pred             HHHHHHHHhCchhHH------------cCCCCC----CChhhHHHHHHHHh
Q 042599            5 MTMKTAIQLGVLEIM------------LPKNNK----ETPIILDRMLRLLA   39 (214)
Q Consensus         5 ~~L~~a~~lgifd~L------------LA~~~~----~~~~~l~rlLr~L~   39 (214)
                      ++|++|+||||||+|            |+++++    .++..|+|+||+|+
T Consensus         1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~   51 (51)
T PF08100_consen    1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV   51 (51)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence            689999999999999            566655    56778999999986

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>PRK06922 hypothetical protein; Provisional

Probab=97.85  E-value=7e-05  Score=69.05  Aligned_cols=114  Identities=11%  Similarity=0.086  Sum_probs=77.9

Q ss_pred             CcchhhhcchhhHhhHHhhhhh----ccHHH---HHh--cCCCceEEccC--CccHHHHHHhCCCc--------hHHHHh
Q 042599          100 TQHSYLCMKDALLEGFINTLNR----YYLKN---ALL--EGSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQ  160 (214)
Q Consensus       100 ~~~~~~~~~p~~~~~f~~~m~~----~~~~~---~~~--~g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~  160 (214)
                      .+|+++...|+..++|...|..    ....+   .+.  .+...++|+|+  |..+..+++.+|+.        +..++.
T Consensus       378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~  457 (677)
T PRK06922        378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT  457 (677)
T ss_pred             HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            5778888888888888765533    00011   011  13457899997  55555777778854        234444


Q ss_pred             hcc----CCCceEEecCCCCc-c--cCc--cceeeeehhccCC-----------ChHHHHHHHHHhHHhcCCC
Q 042599          161 SMH----NHTVVEHVSGHMFI-E--VPN--GQALFMKWILSDW-----------DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       161 ~~~----~~~rv~~~~gDff~-~--~P~--~d~y~l~~ILHdw-----------~d~~~~~IL~~~~~Al~pg  213 (214)
                      +..    ...+++++.+|..+ +  +|.  .|+++++.++|+|           ++++..++|++++++|+||
T Consensus       458 Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG  530 (677)
T PRK06922        458 LKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG  530 (677)
T ss_pred             HHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence            432    23468888899875 2  443  4999999999986           4689999999999999998

>TIGR00740 methyltransferase, putative

Probab=97.62  E-value=0.00028  Score=57.61  Aligned_cols=83  Identities=12%  Similarity=0.177  Sum_probs=62.1

Q ss_pred             CCCceEEccC--CccHHHHHHh--CCCc--------hHHHHhhcc------CCCceEEecCCCCc-ccCccceeeeehhc
Q 042599          131 GSVPHTKAQS--GMDAFAAAAK--DARM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPNGQALFMKWIL  191 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~--~P~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~~d~y~l~~IL  191 (214)
                      ....++|+|.  |..+..++++  +|+.        +..++.+..      ...+++++.+|+.+ +.|+.|+++...+|
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l  132 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  132 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence            3456999996  6556666665  3542        334433321      13579999999986 55567999999999


Q ss_pred             cCCChHHHHHHHHHhHHhcCCC
Q 042599          192 SDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       192 Hdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |.+++++..++|++++++|+||
T Consensus       133 ~~~~~~~~~~~l~~i~~~Lkpg  154 (239)
T TIGR00740       133 QFLPPEDRIALLTKIYEGLNPN  154 (239)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999997

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.47  E-value=0.00025  Score=50.48  Aligned_cols=81  Identities=12%  Similarity=-0.001  Sum_probs=59.2

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhc------cCCCceEEecCCC-Cc-ccC-ccceeeeeh-hcc
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM------HNHTVVEHVSGHM-FI-EVP-NGQALFMKW-ILS  192 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~------~~~~rv~~~~gDf-f~-~~P-~~d~y~l~~-ILH  192 (214)
                      ..++|+|.  |..+..+++++|..        +..++.+.      ...++|+++.+|+ ++ ..+ +-|++++.. .+|
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~   82 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTLH   82 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSGG
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCccc
Confidence            45899996  66777788866754        33443332      2458999999999 43 233 359999999 677


Q ss_pred             CCCh-HHHHHHHHHhHHhcCCC
Q 042599          193 DWDD-EECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d-~~~~~IL~~~~~Al~pg  213 (214)
                      .+.+ ++..++|+++++.|+||
T Consensus        83 ~~~~~~~~~~~l~~~~~~L~pg  104 (112)
T PF12847_consen   83 FLLPLDERRRVLERIRRLLKPG  104 (112)
T ss_dssp             GCCHHHHHHHHHHHHHHHEEEE
T ss_pred             cccchhHHHHHHHHHHHhcCCC
Confidence            6554 79999999999999987

...

>PLN03075 nicotianamine synthase; Provisional

Probab=97.45  E-value=0.00056  Score=57.68  Aligned_cols=82  Identities=12%  Similarity=0.082  Sum_probs=59.1

Q ss_pred             CCCceEEccCCc---cHH-HHHHhCCCc--------hHHHHhhcc-------CCCceEEecCCCCcccC--cc-ceeeee
Q 042599          131 GSVPHTKAQSGM---DAF-AAAAKDARM--------NNLFNQSMH-------NHTVVEHVSGHMFIEVP--NG-QALFMK  188 (214)
Q Consensus       131 g~~~~~dvgGG~---~~~-~~~~~~P~l--------~~v~~~~~~-------~~~rv~~~~gDff~~~P--~~-d~y~l~  188 (214)
                      +...++|||.|.   .+. ...+..|+-        +..++.+..       ..++|+|..+|..+..+  .. |++|++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            556799999642   233 333456752        233333322       23689999999987543  23 999999


Q ss_pred             hhccCCChHHHHHHHHHhHHhcCCC
Q 042599          189 WILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       189 ~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                       +||+|+.++-.++|+++++.|+||
T Consensus       203 -ALi~~dk~~k~~vL~~l~~~LkPG  226 (296)
T PLN03075        203 -ALVGMDKEEKVKVIEHLGKHMAPG  226 (296)
T ss_pred             -cccccccccHHHHHHHHHHhcCCC
Confidence             999999999999999999999998

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=97.34  E-value=0.0008  Score=55.35  Aligned_cols=83  Identities=12%  Similarity=0.175  Sum_probs=61.2

Q ss_pred             CCCceEEccC--CccHHHHHH--hCCCc--------hHHHHhhcc------CCCceEEecCCCCc-ccCccceeeeehhc
Q 042599          131 GSVPHTKAQS--GMDAFAAAA--KDARM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPNGQALFMKWIL  191 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~--~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~~d~y~l~~IL  191 (214)
                      ....++|+|.  |..+..+++  .+|..        +..++.+..      ...+|+++.+|+.+ +.|..|++++..+|
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l  135 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL  135 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence            3456999996  555555655  34643        334443322      23489999999885 44557999999999


Q ss_pred             cCCChHHHHHHHHHhHHhcCCC
Q 042599          192 SDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       192 Hdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |-.++++-..+|++++++|+||
T Consensus       136 ~~l~~~~~~~~l~~i~~~LkpG  157 (247)
T PRK15451        136 QFLEPSERQALLDKIYQGLNPG  157 (247)
T ss_pred             HhCCHHHHHHHHHHHHHhcCCC
Confidence            9999988999999999999997

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.12  E-value=0.00062  Score=47.87  Aligned_cols=79  Identities=13%  Similarity=0.042  Sum_probs=54.2

Q ss_pred             eEEccC--CccHHHHHHhC---CCc--------hHHHHhhcc----CCCceEEecCCCCc-ccCc--cceeee-ehhccC
Q 042599          135 HTKAQS--GMDAFAAAAKD---ARM--------NNLFNQSMH----NHTVVEHVSGHMFI-EVPN--GQALFM-KWILSD  193 (214)
Q Consensus       135 ~~dvgG--G~~~~~~~~~~---P~l--------~~v~~~~~~----~~~rv~~~~gDff~-~~P~--~d~y~l-~~ILHd  193 (214)
                      ++|+|.  |.....+....   |+.        +..++.+..    ...+++++.+|+-+ +++.  .|+++. ..++|.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            468874  66666666654   321        233333322    22489999999976 3333  499999 455888


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      +++++..++|+++++.++||
T Consensus        81 ~~~~~~~~ll~~~~~~l~pg  100 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRPG  100 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999986

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=97.01  E-value=0.0024  Score=53.06  Aligned_cols=82  Identities=10%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc---CCCceEEecCCCCc-ccCcc--ceeeeehhccCCCh
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH---NHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDD  196 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~---~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d  196 (214)
                      ...++|+|.  |..+..+++.+. ++      +..++.+..   ..++|+++.+|+.+ ++|.+  |+++...++|.+++
T Consensus        53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~  132 (263)
T PTZ00098         53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSY  132 (263)
T ss_pred             CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCH
Confidence            356899996  555555555442 11      233333322   24689999999985 67743  99999988888998


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      ++..++|+++++.|+||
T Consensus       133 ~d~~~~l~~i~r~LkPG  149 (263)
T PTZ00098        133 ADKKKLFEKCYKWLKPN  149 (263)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            88999999999999998

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.91  E-value=0.00049  Score=48.05  Aligned_cols=76  Identities=13%  Similarity=0.076  Sum_probs=42.4

Q ss_pred             EEccC--CccHHHHHHhCCCch--------HHHHhhcc--------CCCceEEecCCCCcccCc--cceeeeehhccCCC
Q 042599          136 TKAQS--GMDAFAAAAKDARMN--------NLFNQSMH--------NHTVVEHVSGHMFIEVPN--GQALFMKWILSDWD  195 (214)
Q Consensus       136 ~dvgG--G~~~~~~~~~~P~l~--------~v~~~~~~--------~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~  195 (214)
                      +|+|+  |.....+++++|...        ..++.+..        ...++++...|.++..+.  -|++++..+||.+ 
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l-   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL-   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence            47886  677777888876542        22222221        113567777777765553  3999999999999 


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                       ++-..+|+++++.|+||
T Consensus        80 -~~~~~~l~~~~~~L~pg   96 (99)
T PF08242_consen   80 -EDIEAVLRNIYRLLKPG   96 (99)
T ss_dssp             -S-HHHHHHHHTTT-TSS
T ss_pred             -hhHHHHHHHHHHHcCCC
Confidence             55569999999999998

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.85  E-value=0.0037  Score=42.53  Aligned_cols=75  Identities=17%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             EEccC--CccHHHHHHhCCCc--------hHHHHhhcc--CCCceEEecCCCCc-ccCcc--ceeeeehhccCCChHHHH
Q 042599          136 TKAQS--GMDAFAAAAKDARM--------NNLFNQSMH--NHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDEECL  200 (214)
Q Consensus       136 ~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~--~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~~~~  200 (214)
                      +|+|.  |..+..+.++ +..        +..++.+..  ...+++++.+|+.+ |+|.+  |+++...++|.+  ++-.
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~   77 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE   77 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence            47774  5666666666 322        233333332  24567799999886 66643  999999999999  8889


Q ss_pred             HHHHHhHHhcCCC
Q 042599          201 KILKNCCVQCNTG  213 (214)
Q Consensus       201 ~IL~~~~~Al~pg  213 (214)
                      ++|+++.+.|+||
T Consensus        78 ~~l~e~~rvLk~g   90 (95)
T PF08241_consen   78 AALREIYRVLKPG   90 (95)
T ss_dssp             HHHHHHHHHEEEE
T ss_pred             HHHHHHHHHcCcC
Confidence            9999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=96.85  E-value=0.0075  Score=49.69  Aligned_cols=78  Identities=10%  Similarity=-0.008  Sum_probs=57.8

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhccCCCceEEecCCCCcccCc--cceeeeehhccCCChHHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHNHTVVEHVSGHMFIEVPN--GQALFMKWILSDWDDEEC  199 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d~~~  199 (214)
                      ...++|+|+  |..+..+.++.|..        +..+..+..  .+++++.+|+.+..|.  -|+++...+||..+|.  
T Consensus        30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~--  105 (255)
T PRK14103         30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--RGVDARTGDVRDWKPKPDTDVVVSNAALQWVPEH--  105 (255)
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--cCCcEEEcChhhCCCCCCceEEEEehhhhhCCCH--
Confidence            356899996  66666777877753        234444433  3688999998654343  4999999999987764  


Q ss_pred             HHHHHHhHHhcCCC
Q 042599          200 LKILKNCCVQCNTG  213 (214)
Q Consensus       200 ~~IL~~~~~Al~pg  213 (214)
                      .++|+++++.|+||
T Consensus       106 ~~~l~~~~~~Lkpg  119 (255)
T PRK14103        106 ADLLVRWVDELAPG  119 (255)
T ss_pred             HHHHHHHHHhCCCC
Confidence            67899999999998

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=96.70  E-value=0.0061  Score=48.75  Aligned_cols=79  Identities=10%  Similarity=0.077  Sum_probs=60.3

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhccCCCceEEecCCCCcccCcc--ceeeeehhccCCChHHHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHNHTVVEHVSGHMFIEVPNG--QALFMKWILSDWDDEECL  200 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~~~rv~~~~gDff~~~P~~--d~y~l~~ILHdw~d~~~~  200 (214)
                      ..++|+|.  |..+..+.+..|..        +..++.+....+++++..+|++++.|.+  |+++...+||.+++++..
T Consensus        45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~~~~  124 (204)
T TIGR03587        45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPDNLP  124 (204)
T ss_pred             CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHHHHH
Confidence            46999996  55555666665542        3456666554567889999999877643  999999999999988999


Q ss_pred             HHHHHhHHhcC
Q 042599          201 KILKNCCVQCN  211 (214)
Q Consensus       201 ~IL~~~~~Al~  211 (214)
                      +.++++.+.++
T Consensus       125 ~~l~el~r~~~  135 (204)
T TIGR03587       125 TAYRELYRCSN  135 (204)
T ss_pred             HHHHHHHhhcC
Confidence            99999998764

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.67  E-value=0.0067  Score=49.94  Aligned_cols=80  Identities=10%  Similarity=0.029  Sum_probs=59.8

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhccCCCceEEecCCCCcccC--ccceeeeehhccCCChHHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHNHTVVEHVSGHMFIEVP--NGQALFMKWILSDWDDEEC  199 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~~~rv~~~~gDff~~~P--~~d~y~l~~ILHdw~d~~~  199 (214)
                      ...++|+|.  |.....+++.+|..        +..++.+....++++++.+|+.+..|  +-|+++...+||..+|.  
T Consensus        32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~--  109 (258)
T PRK01683         32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFANASLQWLPDH--  109 (258)
T ss_pred             CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEccChhhCCCH--
Confidence            356899996  66666777777753        34555555555679999999876444  24999999999866654  


Q ss_pred             HHHHHHhHHhcCCC
Q 042599          200 LKILKNCCVQCNTG  213 (214)
Q Consensus       200 ~~IL~~~~~Al~pg  213 (214)
                      .++|+++.++|+||
T Consensus       110 ~~~l~~~~~~Lkpg  123 (258)
T PRK01683        110 LELFPRLVSLLAPG  123 (258)
T ss_pred             HHHHHHHHHhcCCC
Confidence            57999999999987

>TIGR03438 probable methyltransferase

Probab=96.64  E-value=0.012  Score=49.85  Aligned_cols=81  Identities=11%  Similarity=0.123  Sum_probs=56.9

Q ss_pred             CceEEccC--CccHHHHHHhCCC--------c-hHHHHhhc----cCC--CceEEecCCCCcc--cCc------cceeee
Q 042599          133 VPHTKAQS--GMDAFAAAAKDAR--------M-NNLFNQSM----HNH--TVVEHVSGHMFIE--VPN------GQALFM  187 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~--------l-~~v~~~~~----~~~--~rv~~~~gDff~~--~P~------~d~y~l  187 (214)
                      ..++|+|.  |.....++++.+.        + +..++.+.    ...  -+|+++.|||++.  +|.      ..++++
T Consensus        65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~  144 (301)
T TIGR03438        65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP  144 (301)
T ss_pred             CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence            56999996  5555667766541        1 22333222    112  3577889999863  332      147888


Q ss_pred             ehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          188 KWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       188 ~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ...+|+++++++..+|++++++|+||
T Consensus       145 gs~~~~~~~~e~~~~L~~i~~~L~pg  170 (301)
T TIGR03438       145 GSTIGNFTPEEAVAFLRRIRQLLGPG  170 (301)
T ss_pred             cccccCCCHHHHHHHHHHHHHhcCCC
Confidence            89999999999999999999999997

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=96.57  E-value=0.0031  Score=52.52  Aligned_cols=48  Identities=21%  Similarity=0.349  Sum_probs=43.0

Q ss_pred             CceEEecCCCCcccC-cc--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          166 TVVEHVSGHMFIEVP-NG--QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       166 ~rv~~~~gDff~~~P-~~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+|+|..+|+.++.| .+  |+++.++|||-|++++..++|++++++|+||
T Consensus       185 ~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG  235 (264)
T smart00138      185 ERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG  235 (264)
T ss_pred             CcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence            369999999997543 33  9999999999999999999999999999997

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=96.55  E-value=0.005  Score=48.79  Aligned_cols=80  Identities=16%  Similarity=0.162  Sum_probs=56.1

Q ss_pred             ceEEccC--CccHHHHHHhCCCc------hHHHHhhc---cCCCceEEecCCCCcccCcc--ceeeeehhccCCCh-HHH
Q 042599          134 PHTKAQS--GMDAFAAAAKDARM------NNLFNQSM---HNHTVVEHVSGHMFIEVPNG--QALFMKWILSDWDD-EEC  199 (214)
Q Consensus       134 ~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~---~~~~rv~~~~gDff~~~P~~--d~y~l~~ILHdw~d-~~~  199 (214)
                      ...++|+  |.....++.+--.+      +..++.+.   ...++|+++..|+-+..|.+  |++.++-|+|-++| ++-
T Consensus        46 ~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~~~L  125 (201)
T PF05401_consen   46 RALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDDAEDL  125 (201)
T ss_dssp             EEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGSSSHHHH
T ss_pred             eeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCCCHHHH
Confidence            3578997  66666776665444      34455443   34578999999998878864  99999999999986 688


Q ss_pred             HHHHHHhHHhcCCC
Q 042599          200 LKILKNCCVQCNTG  213 (214)
Q Consensus       200 ~~IL~~~~~Al~pg  213 (214)
                      ...++++.++|+||
T Consensus       126 ~~~l~~l~~~L~pg  139 (201)
T PF05401_consen  126 RAALDRLVAALAPG  139 (201)
T ss_dssp             HHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999999986

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=96.31  E-value=0.016  Score=43.77  Aligned_cols=80  Identities=15%  Similarity=0.161  Sum_probs=58.1

Q ss_pred             CCceEEccC--CccHHHHH-HhCCCc--------hHHHHhhcc-----CCCceEEecCCCCc-c--cC-ccceeeeehhc
Q 042599          132 SVPHTKAQS--GMDAFAAA-AKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFI-E--VP-NGQALFMKWIL  191 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~-~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~-~--~P-~~d~y~l~~IL  191 (214)
                      ...++|+|.  |.....++ ..+|..        +..++.+..     ..+++++..+|+++ +  ++ +-|+++...++
T Consensus         4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~l   83 (152)
T PF13847_consen    4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGVL   83 (152)
T ss_dssp             TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEESTG
T ss_pred             CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCch
Confidence            356899996  66677777 445632        345555443     24589999999998 2  22 35999999999


Q ss_pred             cCCChHHHHHHHHHhHHhcCCC
Q 042599          192 SDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       192 Hdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |..++..  .+|+++.+.|++|
T Consensus        84 ~~~~~~~--~~l~~~~~~lk~~  103 (152)
T PF13847_consen   84 HHFPDPE--KVLKNIIRLLKPG  103 (152)
T ss_dssp             GGTSHHH--HHHHHHHHHEEEE
T ss_pred             hhccCHH--HHHHHHHHHcCCC
Confidence            9999875  7799999999875

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.28  E-value=0.0089  Score=49.27  Aligned_cols=80  Identities=10%  Similarity=0.094  Sum_probs=56.2

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc------CCCceEEecCCCCc--ccCc--cceeeeehhccC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH------NHTVVEHVSGHMFI--EVPN--GQALFMKWILSD  193 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~------~~~rv~~~~gDff~--~~P~--~d~y~l~~ILHd  193 (214)
                      ...++|+|+  |..+..+++...++      +..++.+..      ..++++++.+|+.+  +.+.  -|++++..+||.
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~  124 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEW  124 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHh
Confidence            356899997  55555666654433      233333321      13578999999864  3443  499999999998


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++|..  .+|+++.+.|+||
T Consensus       125 ~~~~~--~~l~~~~~~Lkpg  142 (255)
T PRK11036        125 VADPK--SVLQTLWSVLRPG  142 (255)
T ss_pred             hCCHH--HHHHHHHHHcCCC
Confidence            87664  7899999999997

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=96.27  E-value=0.011  Score=51.07  Aligned_cols=80  Identities=9%  Similarity=0.144  Sum_probs=57.8

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhccC--CCceEEecCCCCc-ccCc--cceeeeehhccCCCh
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHN--HTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDD  196 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~--~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d  196 (214)
                      ...++|+|+  |.....+++..|..        +..++.+...  ..+++++.+|+.+ ++|.  -|+++...+||.|+|
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d  193 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD  193 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC
Confidence            356899996  55455666666532        2233333321  3578999999885 5554  399999999999998


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      .+  ++|+++++.|+||
T Consensus       194 ~~--~~L~e~~rvLkPG  208 (340)
T PLN02490        194 PQ--RGIKEAYRVLKIG  208 (340)
T ss_pred             HH--HHHHHHHHhcCCC
Confidence            75  6899999999997

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.26  E-value=0.019  Score=45.58  Aligned_cols=81  Identities=9%  Similarity=-0.020  Sum_probs=58.1

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhc-----cCCCceEEecCCCCc-ccCc-cceeeeehhccCCChH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM-----HNHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWDDE  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~-----~~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d~  197 (214)
                      ..++|+|+  |..+..++++.-++      +..++.+.     ...+.|++...|+.+ +.+. -|+++...++|.++++
T Consensus        32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~~  111 (197)
T PRK11207         32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMFLEAK  111 (197)
T ss_pred             CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhhCCHH
Confidence            56899996  66566666653322      22233221     123458888899875 3444 4999999999999999


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +...++++++++|+||
T Consensus       112 ~~~~~l~~i~~~Lkpg  127 (197)
T PRK11207        112 TIPGLIANMQRCTKPG  127 (197)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999999999997

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.22  E-value=0.011  Score=48.33  Aligned_cols=79  Identities=19%  Similarity=0.140  Sum_probs=58.9

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhccC-----CCceEEecCCCCc-ccCcc--ceeeeehhccCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHN-----HTVVEHVSGHMFI-EVPNG--QALFMKWILSDW  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~-----~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw  194 (214)
                      ..++||++  |..+..+.+..+.-        +..++.+...     ...|+|+.+|..+ |+|..  |++.++.-||+.
T Consensus        53 ~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv  132 (238)
T COG2226          53 DKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNV  132 (238)
T ss_pred             CEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcC
Confidence            45899987  66677788887632        1233333221     1239999999986 78853  999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|  --+.|+.+++.|+||
T Consensus       133 ~d--~~~aL~E~~RVlKpg  149 (238)
T COG2226         133 TD--IDKALKEMYRVLKPG  149 (238)
T ss_pred             CC--HHHHHHHHHHhhcCC
Confidence            95  457899999999998

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=96.05  E-value=0.026  Score=46.89  Aligned_cols=79  Identities=16%  Similarity=0.122  Sum_probs=55.9

Q ss_pred             CceEEccC--CccHHHHHHhC-CC--c------hHHHHhhcc--------CCCceEEecCCCCc-ccCcc--ceeeeehh
Q 042599          133 VPHTKAQS--GMDAFAAAAKD-AR--M------NNLFNQSMH--------NHTVVEHVSGHMFI-EVPNG--QALFMKWI  190 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~-P~--l------~~v~~~~~~--------~~~rv~~~~gDff~-~~P~~--d~y~l~~I  190 (214)
                      ..++|+|.  |..+..+.++. |.  +      +..++.+..        ..++|+++.+|..+ |+|.+  |++++...
T Consensus        75 ~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~  154 (261)
T PLN02233         75 DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYG  154 (261)
T ss_pred             CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecc
Confidence            56899996  55445555553 42  1      233443321        13579999999875 56643  99999999


Q ss_pred             ccCCChHHHHHHHHHhHHhcCCC
Q 042599          191 LSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ||+++|.  .++|+++++.|+||
T Consensus       155 l~~~~d~--~~~l~ei~rvLkpG  175 (261)
T PLN02233        155 LRNVVDR--LKAMQEMYRVLKPG  175 (261)
T ss_pred             cccCCCH--HHHHHHHHHHcCcC
Confidence            9999865  56899999999997

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=95.97  E-value=0.026  Score=45.33  Aligned_cols=78  Identities=10%  Similarity=0.100  Sum_probs=56.3

Q ss_pred             ceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCc-ccCc-cceeeeehhccCCC
Q 042599          134 PHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWD  195 (214)
Q Consensus       134 ~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~  195 (214)
                      .++|+|.  |..+..+++.+|..        +..++.+..      ..++++++.+|+.+ +.|. -|+++...++|.++
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~~   81 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHIK   81 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhCC
Confidence            4789996  66666777777643        122222221      24689999999975 4444 49999999999987


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      +.  ..+|+++++.|+||
T Consensus        82 ~~--~~~l~~~~~~Lkpg   97 (224)
T smart00828       82 DK--MDLFSNISRHLKDG   97 (224)
T ss_pred             CH--HHHHHHHHHHcCCC
Confidence            74  68999999999997

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=95.94  E-value=0.032  Score=44.37  Aligned_cols=80  Identities=13%  Similarity=0.092  Sum_probs=58.1

Q ss_pred             CCceEEccC--CccHHHHHHhCCC---c------hHHHHhhcc---CCCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDAR---M------NNLFNQSMH---NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~---l------~~v~~~~~~---~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw  194 (214)
                      ...++|+|+  |.....++++.|.   +      +..++.+..   ...+++++.+|+.+ +.+.  .|++++..++|+.
T Consensus        40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~  119 (223)
T TIGR01934        40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV  119 (223)
T ss_pred             CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc
Confidence            356899996  6666677777774   1      233333322   24579999999986 3443  4999999999988


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++  ...+|+++.+.|+||
T Consensus       120 ~~--~~~~l~~~~~~L~~g  136 (223)
T TIGR01934       120 TD--IQKALREMYRVLKPG  136 (223)
T ss_pred             cc--HHHHHHHHHHHcCCC
Confidence            76  568999999999987

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.93  E-value=0.0062  Score=48.46  Aligned_cols=48  Identities=19%  Similarity=0.309  Sum_probs=36.7

Q ss_pred             CceEEecCCCCcc-cCcc--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          166 TVVEHVSGHMFIE-VPNG--QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       166 ~rv~~~~gDff~~-~P~~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+|+|..+|..++ .|.+  |+++.||||--++++...+||++++++|+||
T Consensus       118 ~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg  168 (196)
T PF01739_consen  118 KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG  168 (196)
T ss_dssp             TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE
T ss_pred             CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC
Confidence            4799999999983 3333  9999999999999999999999999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=95.75  E-value=0.013  Score=49.43  Aligned_cols=48  Identities=13%  Similarity=0.188  Sum_probs=43.5

Q ss_pred             CceEEecCCCCc-ccC-c-c-ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          166 TVVEHVSGHMFI-EVP-N-G-QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       166 ~rv~~~~gDff~-~~P-~-~-d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+|+|..+|.++ +.| . . |+++.++||.-++++.-.+++++++++|+||
T Consensus       204 ~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg  255 (287)
T PRK10611        204 NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD  255 (287)
T ss_pred             ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence            579999999997 455 3 3 9999999999999999999999999999997

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=95.60  E-value=0.043  Score=47.02  Aligned_cols=79  Identities=14%  Similarity=0.093  Sum_probs=55.2

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hH-HHHh--h----ccCCCceEEecCCCCc-ccCc-cceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NN-LFNQ--S----MHNHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~-v~~~--~----~~~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~  195 (214)
                      ..++|+|+  |..++.+++..|..      .. .+.+  +    .....+|+++.+|+.+ +.+. -|+++...+||...
T Consensus       124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H~~  203 (322)
T PRK15068        124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRR  203 (322)
T ss_pred             CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhccC
Confidence            56899997  66667777777652      11 1111  1    1124579999999864 3343 39999999998876


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      |-  ..+|+++++.|+||
T Consensus       204 dp--~~~L~~l~~~LkpG  219 (322)
T PRK15068        204 SP--LDHLKQLKDQLVPG  219 (322)
T ss_pred             CH--HHHHHHHHHhcCCC
Confidence            64  46899999999997

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=95.57  E-value=0.043  Score=44.06  Aligned_cols=80  Identities=10%  Similarity=0.121  Sum_probs=55.3

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehhccCCChH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDDE  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d~  197 (214)
                      ..++|+|+  |.....+++..+..      +..++.+..      ..++|+++.+| ++..+. -|+++...++|.|+++
T Consensus        65 ~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~fD~v~~~~~l~~~~~~  143 (230)
T PRK07580         65 LRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD-LESLLGRFDTVVCLDVLIHYPQE  143 (230)
T ss_pred             CEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC-chhccCCcCEEEEcchhhcCCHH
Confidence            46899996  55555666655433      223333221      12589999999 443333 4999999999999999


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +...+++++.+.++++
T Consensus       144 ~~~~~l~~l~~~~~~~  159 (230)
T PRK07580        144 DAARMLAHLASLTRGS  159 (230)
T ss_pred             HHHHHHHHHHhhcCCe
Confidence            9999999998876654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=95.54  E-value=0.059  Score=43.31  Aligned_cols=79  Identities=19%  Similarity=0.098  Sum_probs=55.7

Q ss_pred             CceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCc-ccCc--cceeeeehhcc
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN--GQALFMKWILS  192 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~--~d~y~l~~ILH  192 (214)
                      ..++|+|+  |..+..++...| +.        +..+..+..      ...+++++.+|+.+ +.+.  -|++++..+||
T Consensus        53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~  132 (239)
T PRK00216         53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR  132 (239)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc
Confidence            56899996  555566677666 21        223333222      13578999999986 3433  49999999999


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+++  ...+|+++.+.|+||
T Consensus       133 ~~~~--~~~~l~~~~~~L~~g  151 (239)
T PRK00216        133 NVPD--IDKALREMYRVLKPG  151 (239)
T ss_pred             cCCC--HHHHHHHHHHhccCC
Confidence            9987  457899999999987

>PRK08317 hypothetical protein; Provisional

Probab=95.46  E-value=0.067  Score=42.83  Aligned_cols=79  Identities=18%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             CceEEccC--CccHHHHHHhC-CCc--------hHHHHhhc----cCCCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSM----HNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDW  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~----~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw  194 (214)
                      ..++|+|.  |..+..++... |..        +..++.+.    ....++++..+|+.+ +++.  .|+++.++++|.+
T Consensus        21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~  100 (241)
T PRK08317         21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHL  100 (241)
T ss_pred             CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhcc
Confidence            56899996  66666676665 432        22333322    224579999999874 5553  4999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|.  ..+|+++.+.|+||
T Consensus       101 ~~~--~~~l~~~~~~L~~g  117 (241)
T PRK08317        101 EDP--ARALAEIARVLRPG  117 (241)
T ss_pred             CCH--HHHHHHHHHHhcCC
Confidence            875  56799999999987

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=95.34  E-value=0.037  Score=45.22  Aligned_cols=79  Identities=15%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             CceEEccC--CccHHHHHHhC-CCc--------hHHHHhhcc-----CCCceEEecCCCCc-ccCcc--ceeeeehhccC
Q 042599          133 VPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPNG--QALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHd  193 (214)
                      ..++|+++  |..+..++++. |+-        +..++.+..     ...+|+++.+|..+ |+|..  |++++...||+
T Consensus        49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn  128 (233)
T PF01209_consen   49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRN  128 (233)
T ss_dssp             -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG
T ss_pred             CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHh
Confidence            46899996  55566666654 321        233333321     23489999999986 77753  99999999999


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+|..  +.|+.+++.|+||
T Consensus       129 ~~d~~--~~l~E~~RVLkPG  146 (233)
T PF01209_consen  129 FPDRE--RALREMYRVLKPG  146 (233)
T ss_dssp             -SSHH--HHHHHHHHHEEEE
T ss_pred             hCCHH--HHHHHHHHHcCCC
Confidence            99854  5799999999997

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=95.28  E-value=0.082  Score=42.61  Aligned_cols=79  Identities=14%  Similarity=0.121  Sum_probs=55.4

Q ss_pred             CceEEccC--CccHHHHHHhC-CCc--------hHHHHhhc-----cCCCceEEecCCCCc-ccCcc--ceeeeehhccC
Q 042599          133 VPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSM-----HNHTVVEHVSGHMFI-EVPNG--QALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~-----~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHd  193 (214)
                      ..++|+|.  |..+..+.+.. |..        +..++.+.     ...++++++.+|..+ ++|.+  |++++...+|.
T Consensus        47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  126 (231)
T TIGR02752        47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRN  126 (231)
T ss_pred             CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccccc
Confidence            57999997  55455566654 432        22332221     123579999999985 45643  99999999998


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      +++-  .++|+++.+.|+||
T Consensus       127 ~~~~--~~~l~~~~~~Lk~g  144 (231)
T TIGR02752       127 VPDY--MQVLREMYRVVKPG  144 (231)
T ss_pred             CCCH--HHHHHHHHHHcCcC
Confidence            8876  47899999999997

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=95.21  E-value=0.051  Score=48.87  Aligned_cols=81  Identities=12%  Similarity=0.190  Sum_probs=59.8

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc---CCCceEEecCCCCc---ccCc--cceeeeehhccCCCh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH---NHTVVEHVSGHMFI---EVPN--GQALFMKWILSDWDD  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~---~~~rv~~~~gDff~---~~P~--~d~y~l~~ILHdw~d  196 (214)
                      ..++|+|.  |..+..+.+...++      +..++.+..   ..++++++.+|+.+   ++|.  -|+++...++|.++|
T Consensus        39 ~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~  118 (475)
T PLN02336         39 KSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSD  118 (475)
T ss_pred             CEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCH
Confidence            46899996  66666666655433      233333321   23578999999963   4554  399999999999999


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      ++..++|+++++.|+||
T Consensus       119 ~~~~~~l~~~~r~Lk~g  135 (475)
T PLN02336        119 KEVENLAERMVKWLKVG  135 (475)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999999987

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=95.09  E-value=0.13  Score=41.25  Aligned_cols=82  Identities=11%  Similarity=0.065  Sum_probs=56.7

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----C--CCceEEecCCCCcccCccceeeeehhccCCChH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----N--HTVVEHVSGHMFIEVPNGQALFMKWILSDWDDE  197 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~--~~rv~~~~gDff~~~P~~d~y~l~~ILHdw~d~  197 (214)
                      ...++|+|.  |..+..+.+....+      +..+..+..    .  ..++++..+|+.+...+-|+++...++|.++++
T Consensus        56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~  135 (219)
T TIGR02021        56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPAS  135 (219)
T ss_pred             CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHH
Confidence            356899996  55555565554332      233433321    1  247999999987533335999999999999988


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +-.++++++.+.++++
T Consensus       136 ~~~~~l~~i~~~~~~~  151 (219)
T TIGR02021       136 DMAKALGHLASLTKER  151 (219)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            8889999999887765

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=94.97  E-value=0.034  Score=42.56  Aligned_cols=46  Identities=20%  Similarity=0.271  Sum_probs=38.9

Q ss_pred             CceEEecCCCCc-ccCcc--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          166 TVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       166 ~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+|+++.+|..+ |.+.+  |++++..+||+|+|.  .+.|+++++.|+||
T Consensus        26 ~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpG   74 (160)
T PLN02232         26 KCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPG   74 (160)
T ss_pred             CceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcC
Confidence            479999999875 45543  999999999999754  58999999999998

>PLN02244 tocopherol O-methyltransferase

Probab=94.86  E-value=0.13  Score=44.39  Aligned_cols=79  Identities=10%  Similarity=-0.006  Sum_probs=55.9

Q ss_pred             CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhc------cCCCceEEecCCCCc-ccCcc--ceeeeehhccCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSM------HNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDW  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~------~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw  194 (214)
                      ..++|+|.  |..+..+++++. ++      +..++.+.      ...++|+++.+|+.+ ++|.+  |+++....+|.+
T Consensus       120 ~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~  199 (340)
T PLN02244        120 KRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHM  199 (340)
T ss_pred             CeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhcc
Confidence            45899996  655666666542 22      12222221      123579999999985 56643  999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|.  .++|+++++.|+||
T Consensus       200 ~d~--~~~l~e~~rvLkpG  216 (340)
T PLN02244        200 PDK--RKFVQELARVAAPG  216 (340)
T ss_pred             CCH--HHHHHHHHHHcCCC
Confidence            874  58899999999997

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=94.80  E-value=0.13  Score=42.52  Aligned_cols=79  Identities=14%  Similarity=0.116  Sum_probs=57.8

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------------hHHHH----hhc----cCCCceEEecCCCCc-ccCc--ccee
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------------NNLFN----QSM----HNHTVVEHVSGHMFI-EVPN--GQAL  185 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------------~~v~~----~~~----~~~~rv~~~~gDff~-~~P~--~d~y  185 (214)
                      ..++|++|  |..+|.++++-+..              +..++    +++    ...++++++.+|-=+ |+|.  .|.|
T Consensus       102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~y  181 (296)
T KOG1540|consen  102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAY  181 (296)
T ss_pred             CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeE
Confidence            45899987  67788877654431              12222    121    124579999999876 7884  4999


Q ss_pred             eeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          186 FMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       186 ~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+..=+.+|+|-+  +.|+..++.|+||
T Consensus       182 TiafGIRN~th~~--k~l~EAYRVLKpG  207 (296)
T KOG1540|consen  182 TIAFGIRNVTHIQ--KALREAYRVLKPG  207 (296)
T ss_pred             EEecceecCCCHH--HHHHHHHHhcCCC
Confidence            9999999999864  7899999999998

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=94.64  E-value=0.13  Score=45.17  Aligned_cols=81  Identities=9%  Similarity=0.008  Sum_probs=59.3

Q ss_pred             CceEEccC--CccHHHHHHhCCCch--------HHHHhhcc--------CCCceEEecCCCCcccCc--cceeeee---h
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARMN--------NLFNQSMH--------NHTVVEHVSGHMFIEVPN--GQALFMK---W  189 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l~--------~v~~~~~~--------~~~rv~~~~gDff~~~P~--~d~y~l~---~  189 (214)
                      ..++|+|.  |.....+++++|+..        ..++.+..        ...+++++.+|.++.++.  -|+++.-   +
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh  309 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFH  309 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCcc
Confidence            36899996  666667788899641        22322221        124799999999987753  4988884   5


Q ss_pred             hccCCChHHHHHHHHHhHHhcCCC
Q 042599          190 ILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..|.++++.+.++++++++.|+||
T Consensus       310 ~~~~~~~~ia~~l~~~a~~~LkpG  333 (378)
T PRK15001        310 QQHALTDNVAWEMFHHARRCLKIN  333 (378)
T ss_pred             cCccCCHHHHHHHHHHHHHhcccC
Confidence            566688888999999999999997

>TIGR00477 tehB tellurite resistance protein TehB

Probab=94.54  E-value=0.16  Score=40.07  Aligned_cols=81  Identities=6%  Similarity=0.045  Sum_probs=54.7

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhc----cCCCceEEecCCCCc-ccCc-cceeeeehhccCCChHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM----HNHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWDDEE  198 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~----~~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d~~  198 (214)
                      ..++|+|.  |..+..++++.-++      +..++.+.    ...-.++...+|+.+ +.++ -|+++...++|..++++
T Consensus        32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~~~  111 (195)
T TIGR00477        32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMFLQAGR  111 (195)
T ss_pred             CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccccCCHHH
Confidence            46899996  55555555543222      22232221    111136777778754 3343 49999999999999999


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                      ...+++++++.|+||
T Consensus       112 ~~~~l~~~~~~Lkpg  126 (195)
T TIGR00477       112 VPEIIANMQAHTRPG  126 (195)
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999999997

Part of a tellurite-reducing operon tehA and tehB

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=94.43  E-value=0.16  Score=42.61  Aligned_cols=81  Identities=11%  Similarity=0.043  Sum_probs=57.0

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhc----cCCCceEEecCCCCcc-cCc-cceeeeehhccCCChHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM----HNHTVVEHVSGHMFIE-VPN-GQALFMKWILSDWDDEE  198 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~----~~~~rv~~~~gDff~~-~P~-~d~y~l~~ILHdw~d~~  198 (214)
                      ..++|+|.  |..+..+++..-++      +..++.+.    ...-.+++..+|+.+. ++. -|+++...+||-.++++
T Consensus       122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~~~~  201 (287)
T PRK12335        122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLNRER  201 (287)
T ss_pred             CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCCHHH
Confidence            47899996  55555555543322      22233221    1122688888898754 333 49999999999999999


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                      ...+|+++.+.++||
T Consensus       202 ~~~~l~~~~~~Lkpg  216 (287)
T PRK12335        202 IPAIIKNMQEHTNPG  216 (287)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            999999999999997

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=94.29  E-value=0.19  Score=41.69  Aligned_cols=79  Identities=18%  Similarity=0.251  Sum_probs=53.6

Q ss_pred             CceEEccC--CccHHHHHHh-CCC--c------hHHHHhhcc-----CCCceEEecCCCCc-ccCc-c-ceeeeehhccC
Q 042599          133 VPHTKAQS--GMDAFAAAAK-DAR--M------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPN-G-QALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~-~P~--l------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~-~-d~y~l~~ILHd  193 (214)
                      ..++|+|.  |..++.+++. .|.  +      +..++.+..     ..++++++.+|+.+ ++|. . |+++...++|.
T Consensus        79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~  158 (272)
T PRK11873         79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVINL  158 (272)
T ss_pred             CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcccC
Confidence            56899986  5444444443 232  1      223333321     23589999999875 5554 3 99999999998


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++|.  .++|+++.+.|+||
T Consensus       159 ~~d~--~~~l~~~~r~LkpG  176 (272)
T PRK11873        159 SPDK--ERVFKEAFRVLKPG  176 (272)
T ss_pred             CCCH--HHHHHHHHHHcCCC
Confidence            8765  46899999999997

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=94.05  E-value=0.28  Score=32.83  Aligned_cols=48  Identities=15%  Similarity=0.037  Sum_probs=40.7

Q ss_pred             CCceEEecCCCCccc---C-ccceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          165 HTVVEHVSGHMFIEV---P-NGQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       165 ~~rv~~~~gDff~~~---P-~~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..+++++.+|+.+..   + +.|+++....+|.+ .+....+++++.+.|+||
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~   97 (107)
T cd02440          46 ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPG   97 (107)
T ss_pred             ccceEEEEcChhhhccccCCceEEEEEccceeeh-hhHHHHHHHHHHHHcCCC
Confidence            467999999999754   2 35999999999987 789999999999999886

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=94.04  E-value=0.11  Score=41.69  Aligned_cols=46  Identities=15%  Similarity=0.266  Sum_probs=29.0

Q ss_pred             CCceEEecCCCCcc------cCccceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          165 HTVVEHVSGHMFIE------VPNGQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       165 ~~rv~~~~gDff~~------~P~~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..+|++..|||+++      +.+||++|+.+.+  |+++-..+| ++....|++|
T Consensus       100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G  151 (205)
T PF08123_consen  100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLAL-AELLLELKPG  151 (205)
T ss_dssp             --EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT
T ss_pred             cccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHH-HHHHhcCCCC
Confidence            46799999999963      2358999999875  777766666 6666788987

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=94.01  E-value=0.26  Score=44.36  Aligned_cols=79  Identities=11%  Similarity=0.139  Sum_probs=54.5

Q ss_pred             CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhc----cCCCceEEecCCCCc-ccCcc--ceeeeehhccCCCh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSM----HNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDD  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~----~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d  196 (214)
                      ..++|+|.  |..+..+++... ..      +..+..+.    ....+|+++.+|+++ ++|.+  |+++...++|.++|
T Consensus       268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d  347 (475)
T PLN02336        268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQD  347 (475)
T ss_pred             CEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccCC
Confidence            46899996  544444554432 11      22232222    223579999999996 56643  99999999998887


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      .  .++|+++++.|+||
T Consensus       348 ~--~~~l~~~~r~Lkpg  362 (475)
T PLN02336        348 K--PALFRSFFKWLKPG  362 (475)
T ss_pred             H--HHHHHHHHHHcCCC
Confidence            5  47899999999998

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=93.87  E-value=0.2  Score=40.16  Aligned_cols=79  Identities=13%  Similarity=0.060  Sum_probs=54.9

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-CCCceEEecCCCCc-ccCc--cceeeeehhccCCChHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEE  198 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~  198 (214)
                      ..++|+|+  |.....+.+..|..        +..++.+.. ..++++++.+|+.+ +.|.  -|+++...++|.-+|  
T Consensus        36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~--  113 (240)
T TIGR02072        36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD--  113 (240)
T ss_pred             CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC--
Confidence            35899996  55555677776643        223332222 12478999999985 4453  399999999996655  


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                      -.++|+++.+.|+||
T Consensus       114 ~~~~l~~~~~~L~~~  128 (240)
T TIGR02072       114 LSQALSELARVLKPG  128 (240)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            457899999999987

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=93.67  E-value=0.058  Score=36.17  Aligned_cols=42  Identities=14%  Similarity=0.202  Sum_probs=34.8

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF   71 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~   71 (214)
                      |+..++++...+.+.|..|...|+++..          ++.|..|+-+..++
T Consensus        25 i~~~~~L~~~~~~~yL~~L~~~gLI~~~----------~~~Y~lTekG~~~l   66 (77)
T PF14947_consen   25 IMYKANLNYSTLKKYLKELEEKGLIKKK----------DGKYRLTEKGKEFL   66 (77)
T ss_dssp             HHTTST--HHHHHHHHHHHHHTTSEEEE----------TTEEEE-HHHHHHH
T ss_pred             HHHHhCcCHHHHHHHHHHHHHCcCeeCC----------CCEEEECccHHHHH
Confidence            7788999999999999999999999764          78999999987654

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=93.08  E-value=0.023  Score=34.95  Aligned_cols=28  Identities=11%  Similarity=0.221  Sum_probs=25.7

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCN   47 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~   47 (214)
                      ||+++|++...+.|+|..|+..|+++++
T Consensus        24 ia~~~gl~~stv~r~L~tL~~~g~v~~d   51 (52)
T PF09339_consen   24 IARALGLPKSTVHRLLQTLVEEGYVERD   51 (52)
T ss_dssp             HHHHHTS-HHHHHHHHHHHHHTTSEEEC
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCcCeecC
Confidence            8889999999999999999999999985

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=93.06  E-value=0.15  Score=43.72  Aligned_cols=79  Identities=8%  Similarity=-0.020  Sum_probs=52.2

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc------CCCceEEecCCCCc-ccCc--cceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~------~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~  195 (214)
                      ..++|+|.  |..+..+++..-++      +..++.+..      ...+|+++.+|+-+ +.+.  -|+++...+||.++
T Consensus       133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~  212 (322)
T PLN02396        133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVA  212 (322)
T ss_pred             CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcC
Confidence            36899996  44444444322121      223333221      12479999999754 3333  39999999999999


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      |..  .+|+.+++.|+||
T Consensus       213 d~~--~~L~~l~r~LkPG  228 (322)
T PLN02396        213 NPA--EFCKSLSALTIPN  228 (322)
T ss_pred             CHH--HHHHHHHHHcCCC
Confidence            874  7999999999997

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=93.05  E-value=0.066  Score=43.15  Aligned_cols=31  Identities=23%  Similarity=0.576  Sum_probs=28.1

Q ss_pred             ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          183 QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       183 d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |+++..|++-..+|++.+..|++|+++|+|+
T Consensus       124 DlIW~QW~lghLTD~dlv~fL~RCk~~L~~~  154 (218)
T PF05891_consen  124 DLIWIQWCLGHLTDEDLVAFLKRCKQALKPN  154 (218)
T ss_dssp             EEEEEES-GGGS-HHHHHHHHHHHHHHEEEE
T ss_pred             eEEEehHhhccCCHHHHHHHHHHHHHhCcCC
Confidence            9999999999999999999999999999875

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=92.93  E-value=0.6  Score=37.56  Aligned_cols=48  Identities=17%  Similarity=0.177  Sum_probs=42.1

Q ss_pred             CceEEecCCCCcccC--cc--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          166 TVVEHVSGHMFIEVP--NG--QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       166 ~rv~~~~gDff~~~P--~~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+|+++.+|+|+..+  .+  |+++-+.++|..+.+.-.+.++++.++|+||
T Consensus        94 ~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg  145 (213)
T TIGR03840        94 GNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG  145 (213)
T ss_pred             CceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence            579999999997543  23  9999999999999999999999999999997

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00452 methyltransferase, putative

Probab=92.47  E-value=0.46  Score=40.64  Aligned_cols=78  Identities=13%  Similarity=-0.004  Sum_probs=52.9

Q ss_pred             CceEEccC--CccHHHHHHhCCCc-------hHHHHh------hccCCCceEEecCCCCcccC--c-cceeeeehhccCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM-------NNLFNQ------SMHNHTVVEHVSGHMFIEVP--N-GQALFMKWILSDW  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~------~~~~~~rv~~~~gDff~~~P--~-~d~y~l~~ILHdw  194 (214)
                      ..++|+|.  |..++.++...+..       +..+.+      ......++.+..+|+-+ +|  . -|+++...+||.+
T Consensus       123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~-lp~~~~FD~V~s~gvL~H~  201 (314)
T TIGR00452       123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ-LHELYAFDTVFSMGVLYHR  201 (314)
T ss_pred             CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH-CCCCCCcCEEEEcchhhcc
Confidence            56899996  55556666666642       111111      11234678888887643 33  2 3999999999998


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++.  ...|++++++|+||
T Consensus       202 ~dp--~~~L~el~r~LkpG  218 (314)
T TIGR00452       202 KSP--LEHLKQLKHQLVIK  218 (314)
T ss_pred             CCH--HHHHHHHHHhcCCC
Confidence            765  56899999999997

Known examples to date are restricted to the proteobacteria.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=92.32  E-value=0.55  Score=36.59  Aligned_cols=76  Identities=14%  Similarity=0.173  Sum_probs=51.3

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc-cceeeeehhccCCCh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDD  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d  196 (214)
                      ..++|+|.  |.....+++++|+.        +..++.+..     ...+|+++.+|...+.+. -|++++....+++  
T Consensus        33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~~~--  110 (187)
T PRK08287         33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGGNL--  110 (187)
T ss_pred             CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCccCH--
Confidence            46899996  55556677777743        233333221     135799999998765654 4999987655443  


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                         ..+++.+.+.|+||
T Consensus       111 ---~~~l~~~~~~Lk~g  124 (187)
T PRK08287        111 ---TAIIDWSLAHLHPG  124 (187)
T ss_pred             ---HHHHHHHHHhcCCC
Confidence               46889999999887

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=92.23  E-value=0.2  Score=41.83  Aligned_cols=48  Identities=19%  Similarity=0.340  Sum_probs=43.1

Q ss_pred             CceEEecCCCCcccC--cc-ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          166 TVVEHVSGHMFIEVP--NG-QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       166 ~rv~~~~gDff~~~P--~~-d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..|.|-.||.+++-|  +. |+++.|+||=-++.+.-.+||++.+++|+||
T Consensus       184 ~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g  234 (268)
T COG1352         184 KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG  234 (268)
T ss_pred             cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence            359999999997553  44 9999999999999999999999999999997

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=92.21  E-value=0.42  Score=39.07  Aligned_cols=79  Identities=8%  Similarity=0.038  Sum_probs=51.3

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc--cceeeeehhccCCChHHHHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEECLK  201 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~~~~  201 (214)
                      ..++|+|.  |..+..+.+....+      +..++.+......+.++.+|+-+ ++|.  -|+++....+|..+|  ...
T Consensus        44 ~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d--~~~  121 (251)
T PRK10258         44 THVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGN--LST  121 (251)
T ss_pred             CeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCC--HHH
Confidence            46899996  44444444432222      34444444433446788899865 4554  399998888874444  468


Q ss_pred             HHHHhHHhcCCC
Q 042599          202 ILKNCCVQCNTG  213 (214)
Q Consensus       202 IL~~~~~Al~pg  213 (214)
                      +|+++.+.|+||
T Consensus       122 ~l~~~~~~Lk~g  133 (251)
T PRK10258        122 ALRELYRVVRPG  133 (251)
T ss_pred             HHHHHHHHcCCC
Confidence            899999999996

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=92.14  E-value=1.3  Score=34.09  Aligned_cols=83  Identities=12%  Similarity=0.097  Sum_probs=55.1

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc--cceeeeehhccC
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN--GQALFMKWILSD  193 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~--~d~y~l~~ILHd  193 (214)
                      ....++|+|.  |.....++++.|+.        +..++.+..     ....++++.+|.+++++.  -|+++.-==+|+
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~  110 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA  110 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence            4457999995  66666778888983        223322211     122399999999998883  388877544555


Q ss_pred             CCh---HHHHHHHHHhHHhcCCC
Q 042599          194 WDD---EECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d---~~~~~IL~~~~~Al~pg  213 (214)
                      =.+   +-..++++.+.+.|+||
T Consensus       111 ~~~~~~~~~~~~i~~a~~~Lk~~  133 (170)
T PF05175_consen  111 GGDDGLDLLRDFIEQARRYLKPG  133 (170)
T ss_dssp             TSHCHHHHHHHHHHHHHHHEEEE
T ss_pred             ccccchhhHHHHHHHHHHhccCC
Confidence            443   46788999999999875

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=92.02  E-value=0.17  Score=39.94  Aligned_cols=82  Identities=13%  Similarity=0.217  Sum_probs=51.7

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcc----cCcc--ceeeeeh
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIE----VPNG--QALFMKW  189 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~----~P~~--d~y~l~~  189 (214)
                      ..+.++|+|.  |..+..+++++|+.        ...++.+..     ..++|+++.+|+.+.    .|.+  |.+++-.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            4467899995  77777889999974        233333321     235899999999752    3332  4444321


Q ss_pred             hccCCChHHH-------HHHHHHhHHhcCCC
Q 042599          190 ILSDWDDEEC-------LKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~~-------~~IL~~~~~Al~pg  213 (214)
                       -..|+...-       ..+|+.+++.|+||
T Consensus        96 -pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg  125 (194)
T TIGR00091        96 -PDPWPKKRHNKRRITQPHFLKEYANVLKKG  125 (194)
T ss_pred             -CCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence             123443321       46899999999997

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=91.92  E-value=0.86  Score=36.93  Aligned_cols=81  Identities=14%  Similarity=0.080  Sum_probs=52.4

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhc-----cCCCceEEecCCCCcccCc--cceeee------eh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM-----HNHTVVEHVSGHMFIEVPN--GQALFM------KW  189 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~-----~~~~rv~~~~gDff~~~P~--~d~y~l------~~  189 (214)
                      ..++|+|.  |.....++...|..        +..++.+.     ...++++++.+|++++.|.  -|+++.      ..
T Consensus        89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~  168 (251)
T TIGR03534        89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIPEA  168 (251)
T ss_pred             CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCchh
Confidence            46899996  66666777777753        22333221     1234799999999987763  388765      23


Q ss_pred             hccCCChHH------------------HHHHHHHhHHhcCCC
Q 042599          190 ILSDWDDEE------------------CLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~------------------~~~IL~~~~~Al~pg  213 (214)
                      .+|.++.+.                  ...+++++.+.|+||
T Consensus       169 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g  210 (251)
T TIGR03534       169 DIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG  210 (251)
T ss_pred             hhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC
Confidence            344443332                  247899999999987

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PLN02366 spermidine synthase

Probab=91.76  E-value=0.9  Score=38.74  Aligned_cols=80  Identities=10%  Similarity=0.008  Sum_probs=49.3

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc---------hHHHHhhcc---------CCCceEEecCCCCc---ccCc--cceee
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM---------NNLFNQSMH---------NHTVVEHVSGHMFI---EVPN--GQALF  186 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l---------~~v~~~~~~---------~~~rv~~~~gDff~---~~P~--~d~y~  186 (214)
                      ...++++||  |..+.+++ ++|..         +.+++.+..         ..+|++++.+|.++   ..|+  =|+++
T Consensus        92 pkrVLiIGgG~G~~~rell-k~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi  170 (308)
T PLN02366         92 PKKVLVVGGGDGGVLREIA-RHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII  170 (308)
T ss_pred             CCeEEEEcCCccHHHHHHH-hCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence            456899998  45555665 45643         234544322         25799999999753   4443  38887


Q ss_pred             eehhccCCChH---HHHHHHHHhHHhcCCC
Q 042599          187 MKWILSDWDDE---ECLKILKNCCVQCNTG  213 (214)
Q Consensus       187 l~~ILHdw~d~---~~~~IL~~~~~Al~pg  213 (214)
                      +-.--+ +...   .....++++++.|+||
T Consensus       171 ~D~~dp-~~~~~~L~t~ef~~~~~~~L~pg  199 (308)
T PLN02366        171 VDSSDP-VGPAQELFEKPFFESVARALRPG  199 (308)
T ss_pred             EcCCCC-CCchhhhhHHHHHHHHHHhcCCC
Confidence            632111 1112   2567899999999987

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=91.70  E-value=0.9  Score=36.68  Aligned_cols=49  Identities=12%  Similarity=0.152  Sum_probs=43.3

Q ss_pred             CCceEEecCCCCcccCc--c--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          165 HTVVEHVSGHMFIEVPN--G--QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       165 ~~rv~~~~gDff~~~P~--~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..+|++..+|+|+..|.  +  |+++=+.++|..+.+.-.+.++++.++|+||
T Consensus        96 ~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg  148 (218)
T PRK13255         96 AGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG  148 (218)
T ss_pred             cCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence            35799999999986442  3  9999999999999999999999999999998

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=91.61  E-value=0.12  Score=42.60  Aligned_cols=43  Identities=14%  Similarity=0.167  Sum_probs=37.0

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      ||+++|++...++|+|..|+..|++++++.        .++|.+++-.-.|
T Consensus        25 la~~~glpksT~~RlL~tL~~~G~v~~d~~--------~g~Y~Lg~~~~~l   67 (246)
T COG1414          25 LAERLGLPKSTVHRLLQTLVELGYVEQDPE--------DGRYRLGPRLLEL   67 (246)
T ss_pred             HHHHhCcCHHHHHHHHHHHHHCCCEEEcCC--------CCcEeehHHHHHH
Confidence            899999999999999999999999999731        5789998865443

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=91.44  E-value=0.65  Score=39.52  Aligned_cols=81  Identities=11%  Similarity=0.019  Sum_probs=52.6

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeee------
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMK------  188 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~------  188 (214)
                      ..++|+|+  |..+..++...|..        +..++.+..      ..++|+++.+|+++.+|.  -|+++.-      
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~  214 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA  214 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence            46899997  55555677777753        233333321      135799999999987774  3887752      


Q ss_pred             -------hhccCCCh----------HHHHHHHHHhHHhcCCC
Q 042599          189 -------WILSDWDD----------EECLKILKNCCVQCNTG  213 (214)
Q Consensus       189 -------~ILHdw~d----------~~~~~IL~~~~~Al~pg  213 (214)
                             ...+..+.          +...+|++++.+.|+||
T Consensus       215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg  256 (307)
T PRK11805        215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED  256 (307)
T ss_pred             cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC
Confidence                   11232221          34578999999999987

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=91.21  E-value=0.14  Score=34.97  Aligned_cols=40  Identities=15%  Similarity=0.183  Sum_probs=33.5

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVS   67 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s   67 (214)
                      ||+.+|++...+.|+|+.|+..|++....    .    .+.|..++-.
T Consensus        26 ia~~l~i~~~tv~r~l~~L~~~g~l~~~~----~----~~~y~l~~~~   65 (91)
T smart00346       26 LAERLGLSKSTAHRLLNTLQELGYVEQDG----Q----NGRYRLGPKV   65 (91)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCeeecC----C----CCceeecHHH
Confidence            88999999999999999999999998852    1    5678876643

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=90.73  E-value=0.13  Score=42.14  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=35.9

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      ||+.+|++...+.|+|..|+..|+++++          +++|.+.+....|
T Consensus        30 ia~~lglpksT~~RlL~tL~~~G~l~~~----------~~~Y~lG~~~~~l   70 (248)
T TIGR02431        30 VAEATGLTRAAARRFLLTLVELGYVTSD----------GRLFWLTPRVLRL   70 (248)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEeC----------CCEEEecHHHHHH
Confidence            8999999999999999999999999875          5789998865444

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=90.71  E-value=0.94  Score=39.89  Aligned_cols=80  Identities=13%  Similarity=0.172  Sum_probs=53.7

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhc-----cCCCceEEecCCC---CcccCcc--ceeeeehhcc
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM-----HNHTVVEHVSGHM---FIEVPNG--QALFMKWILS  192 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~-----~~~~rv~~~~gDf---f~~~P~~--d~y~l~~ILH  192 (214)
                      +.++|+|.  |..+..+++++|+.        +..+..+.     ...+.|.++.+|.   ++.+|.+  |.+++.. --
T Consensus       124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-Pd  202 (390)
T PRK14121        124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-PV  202 (390)
T ss_pred             CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-CC
Confidence            56899995  77788899999974        22333332     1246799999996   3466753  7776532 22


Q ss_pred             CCChHHH-----HHHHHHhHHhcCCC
Q 042599          193 DWDDEEC-----LKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~-----~~IL~~~~~Al~pg  213 (214)
                      .|+...-     ...|+.+++.|+||
T Consensus       203 PW~KkrHRRlv~~~fL~e~~RvLkpG  228 (390)
T PRK14121        203 PWDKKPHRRVISEDFLNEALRVLKPG  228 (390)
T ss_pred             CccccchhhccHHHHHHHHHHHcCCC
Confidence            3654432     46799999999987

>PRK06202 hypothetical protein; Provisional

Probab=90.37  E-value=1.3  Score=35.72  Aligned_cols=81  Identities=14%  Similarity=0.127  Sum_probs=50.1

Q ss_pred             CCceEEccC--CccHHHHHH----hCCCc--------hHHHHhhccC--CCceEEecC--CCCcccCc-cceeeeehhcc
Q 042599          132 SVPHTKAQS--GMDAFAAAA----KDARM--------NNLFNQSMHN--HTVVEHVSG--HMFIEVPN-GQALFMKWILS  192 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~----~~P~l--------~~v~~~~~~~--~~rv~~~~g--Dff~~~P~-~d~y~l~~ILH  192 (214)
                      ...++|+|.  |..+..+++    ..|..        +..++.+...  ..++++..+  |-+...+. -|+++...+||
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh  140 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH  140 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence            356899996  544444443    23321        3344444332  233444443  33322233 49999999999


Q ss_pred             CCChHHHHHHHHHhHHhcCC
Q 042599          193 DWDDEECLKILKNCCVQCNT  212 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~p  212 (214)
                      ..+|++...+|+++++.++.
T Consensus       141 h~~d~~~~~~l~~~~r~~~~  160 (232)
T PRK06202        141 HLDDAEVVRLLADSAALARR  160 (232)
T ss_pred             cCChHHHHHHHHHHHHhcCe
Confidence            99999989999999988763

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=90.32  E-value=0.19  Score=29.70  Aligned_cols=28  Identities=14%  Similarity=0.126  Sum_probs=26.1

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCN   47 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~   47 (214)
                      ||+.+|++...+.|.|+.|...|+++..
T Consensus        14 la~~l~~s~~tv~~~l~~L~~~g~l~~~   41 (48)
T smart00419       14 IAELLGLTRETVSRTLKRLEKEGLISRE   41 (48)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence            7888999999999999999999999875

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=90.29  E-value=1.3  Score=38.33  Aligned_cols=81  Identities=11%  Similarity=0.129  Sum_probs=56.9

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc----CCCceEEecCCCCcccCcc-ceeeeehhccCC---
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH----NHTVVEHVSGHMFIEVPNG-QALFMKWILSDW---  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~----~~~rv~~~~gDff~~~P~~-d~y~l~~ILHdw---  194 (214)
                      ..++|+|.  |.....+++++|+.        +..++.+..    ..-..+++.+|.++..+.. |+++..--+|+.   
T Consensus       198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~~  277 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQT  277 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCccc
Confidence            35899996  65566778888853        123333221    1123567889998766543 999998888874   


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +.+...++++++.+.|+||
T Consensus       278 ~~~~~~~~i~~a~~~Lkpg  296 (342)
T PRK09489        278 SLDAAQTLIRGAVRHLNSG  296 (342)
T ss_pred             cHHHHHHHHHHHHHhcCcC
Confidence            5567889999999999987

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=90.00  E-value=0.2  Score=31.94  Aligned_cols=37  Identities=14%  Similarity=0.118  Sum_probs=31.9

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecch
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLAS   65 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~   65 (214)
                      ||+.+|++...+.|+|+.|...|++....         .+.|..+|
T Consensus        31 la~~~g~s~~tv~r~l~~L~~~g~i~~~~---------~~~~~l~~   67 (67)
T cd00092          31 IADYLGLTRETVSRTLKELEEEGLISRRG---------RGKYRVNP   67 (67)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCEEecC---------CCeEEeCC
Confidence            99999999999999999999999999861         26777654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=89.93  E-value=2.3  Score=30.06  Aligned_cols=76  Identities=12%  Similarity=-0.053  Sum_probs=50.2

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhc-----cCCCceEEecCCCCcc---cC-ccceeeeehhccC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM-----HNHTVVEHVSGHMFIE---VP-NGQALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~-----~~~~rv~~~~gDff~~---~P-~~d~y~l~~ILHd  193 (214)
                      ..++|+|.  |..+..++++.|+.        +..++.+.     ....+++++.+|....   .+ +-|++++....  
T Consensus        21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~--   98 (124)
T TIGR02469        21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG--   98 (124)
T ss_pred             CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc--
Confidence            47899996  66777788887752        12222221     1235789998886642   22 34888876543  


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                         ....++++++++.|+||
T Consensus        99 ---~~~~~~l~~~~~~Lk~g  115 (124)
T TIGR02469        99 ---GLLQEILEAIWRRLRPG  115 (124)
T ss_pred             ---hhHHHHHHHHHHHcCCC
Confidence               34569999999999987

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=89.82  E-value=0.21  Score=41.71  Aligned_cols=42  Identities=12%  Similarity=0.038  Sum_probs=35.8

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRY   69 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~   69 (214)
                      ||+.+|++...+.|+|..|+..|++.+++.        .++|.+++-...
T Consensus        46 Ia~~lglpkStv~RlL~tL~~~G~l~~~~~--------~~~Y~lG~~l~~   87 (271)
T PRK10163         46 ISLNLDLPLSTTFRLLKVLQAADFVYQDSQ--------LGWWHIGLGVFN   87 (271)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEEcCC--------CCeEEecHHHHH
Confidence            899999999999999999999999988621        678988875443

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=89.79  E-value=0.2  Score=41.40  Aligned_cols=43  Identities=12%  Similarity=0.135  Sum_probs=36.6

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      ||+.+|++...+.|+|+.|+..|+++++.    +    .++|.+++....|
T Consensus        34 ia~~lgl~kstv~Rll~tL~~~G~l~~~~----~----~~~Y~lG~~~~~l   76 (257)
T PRK15090         34 LSQRVMMSKSTVYRFLQTMKTLGYVAQEG----E----SEKYSLTLKLFEL   76 (257)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEEcC----C----CCcEEecHHHHHH
Confidence            89999999999999999999999999862    1    5789998765443

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=89.79  E-value=0.71  Score=38.46  Aligned_cols=83  Identities=14%  Similarity=0.151  Sum_probs=49.0

Q ss_pred             CCCceEEccCCc----cHHHHH-HhCCCc--------hHHHHhhc---cCCCc--eEEecCCCCcc-----cCc--c--c
Q 042599          131 GSVPHTKAQSGM----DAFAAA-AKDARM--------NNLFNQSM---HNHTV--VEHVSGHMFIE-----VPN--G--Q  183 (214)
Q Consensus       131 g~~~~~dvgGG~----~~~~~~-~~~P~l--------~~v~~~~~---~~~~r--v~~~~gDff~~-----~P~--~--d  183 (214)
                      |-.+|+|+|.|.    ...+++ +.+|+-        +-|+..+.   ...++  ..++.+|+.+|     -|.  +  |
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD  147 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD  147 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence            678899999653    345554 347865        33443322   23334  89999999974     232  2  3


Q ss_pred             -----eeeeehhccCCCh-HHHHHHHHHhHHhcCCC
Q 042599          184 -----ALFMKWILSDWDD-EECLKILKNCCVQCNTG  213 (214)
Q Consensus       184 -----~y~l~~ILHdw~d-~~~~~IL~~~~~Al~pg  213 (214)
                           +++|-.|||--+| ++...|++.++++|+||
T Consensus       148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapG  183 (267)
T PF04672_consen  148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPG  183 (267)
T ss_dssp             TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT
T ss_pred             CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCC
Confidence                 8899999999988 89999999999999998

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=89.47  E-value=1.4  Score=37.02  Aligned_cols=82  Identities=12%  Similarity=0.052  Sum_probs=51.8

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeee-----
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMK-----  188 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~-----  188 (214)
                      ...++|+|.  |..+..++...|+.        +..++.+..      ..++|+++.+|+++++|.  -|+++.-     
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~  201 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVD  201 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCCC
Confidence            356899997  44555677777743        233333221      135899999999987774  3887752     


Q ss_pred             --------hhccCCCh----------HHHHHHHHHhHHhcCCC
Q 042599          189 --------WILSDWDD----------EECLKILKNCCVQCNTG  213 (214)
Q Consensus       189 --------~ILHdw~d----------~~~~~IL~~~~~Al~pg  213 (214)
                              ..++..+.          +...+|++++.+.|+||
T Consensus       202 ~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g  244 (284)
T TIGR03533       202 AEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN  244 (284)
T ss_pred             ccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence                    11222221          34578999999999986

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK05785 hypothetical protein; Provisional

Probab=89.34  E-value=1.1  Score=36.28  Aligned_cols=77  Identities=9%  Similarity=0.094  Sum_probs=51.6

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhccCCCceEEecCCCCc-ccCcc--ceeeeehhccCCChHHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMHNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDEEC  199 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~~~  199 (214)
                      ...++|+|.  |..+..+.+... ++      +..++.+..   +.+++.+|+.+ |+|.+  |+++....||+++|.  
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~---~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~--  126 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLV---ADDKVVGSFEALPFRDKSFDVVMSSFALHASDNI--  126 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHh---ccceEEechhhCCCCCCCEEEEEecChhhccCCH--
Confidence            357899996  666666666542 11      233444333   23466788774 55543  999999999998875  


Q ss_pred             HHHHHHhHHhcCCC
Q 042599          200 LKILKNCCVQCNTG  213 (214)
Q Consensus       200 ~~IL~~~~~Al~pg  213 (214)
                      .+.|+.+++.++|.
T Consensus       127 ~~~l~e~~RvLkp~  140 (226)
T PRK05785        127 EKVIAEFTRVSRKQ  140 (226)
T ss_pred             HHHHHHHHHHhcCc
Confidence            45789999998873

>PRK11569 transcriptional repressor IclR; Provisional

Probab=89.12  E-value=0.2  Score=41.80  Aligned_cols=43  Identities=9%  Similarity=0.082  Sum_probs=36.3

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      ||+.+|++...+.|+|..|+..|+++++.    +    .++|++.+....|
T Consensus        49 ia~~lglpksTv~RlL~tL~~~G~l~~~~----~----~~~Y~lG~~l~~L   91 (274)
T PRK11569         49 LAQQAGLPNSTTHRLLTTMQQQGFVRQVG----E----LGHWAIGAHAFIV   91 (274)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEEcC----C----CCeEecCHHHHHH
Confidence            89999999999999999999999998862    1    6889988765433

>PRK04457 spermidine synthase; Provisional

Probab=89.09  E-value=1.2  Score=37.07  Aligned_cols=80  Identities=8%  Similarity=-0.045  Sum_probs=52.8

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCc---ccCc-cceeeeehhcc
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFI---EVPN-GQALFMKWILS  192 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~---~~P~-~d~y~l~~ILH  192 (214)
                      ..++|+|+  |..+..+.+..|+.        +.+++.+..      ..++++++.+|..+   ..|+ -|++++.. .+
T Consensus        68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~~  146 (262)
T PRK04457         68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-FD  146 (262)
T ss_pred             CEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-CC
Confidence            45899997  55555677778864        455554432      24789999999864   3443 39998752 22


Q ss_pred             --CCChHH-HHHHHHHhHHhcCCC
Q 042599          193 --DWDDEE-CLKILKNCCVQCNTG  213 (214)
Q Consensus       193 --dw~d~~-~~~IL~~~~~Al~pg  213 (214)
                        ..+... ...++++|.+.|+||
T Consensus       147 ~~~~~~~l~t~efl~~~~~~L~pg  170 (262)
T PRK04457        147 GEGIIDALCTQPFFDDCRNALSSD  170 (262)
T ss_pred             CCCCccccCcHHHHHHHHHhcCCC
Confidence              122222 379999999999987

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=89.08  E-value=2.2  Score=36.09  Aligned_cols=80  Identities=11%  Similarity=0.103  Sum_probs=59.0

Q ss_pred             ceEEccC--CccHHHHHHhCCCch----------HHHHhhcc------CCCceEEecCCCCcc------cCccceeeeeh
Q 042599          134 PHTKAQS--GMDAFAAAAKDARMN----------NLFNQSMH------NHTVVEHVSGHMFIE------VPNGQALFMKW  189 (214)
Q Consensus       134 ~~~dvgG--G~~~~~~~~~~P~l~----------~v~~~~~~------~~~rv~~~~gDff~~------~P~~d~y~l~~  189 (214)
                      .++||-+  |...++.+.++|+.+          ..++...+      ..+.++|..+|-|+.      .|+-++.+.+-
T Consensus       138 rIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsG  217 (311)
T PF12147_consen  138 RILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSG  217 (311)
T ss_pred             EEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEec
Confidence            4789864  778889999999732          22332221      134469999999973      33458999999


Q ss_pred             hccCCChHHHHH-HHHHhHHhcCCC
Q 042599          190 ILSDWDDEECLK-ILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~~~~-IL~~~~~Al~pg  213 (214)
                      +.--++|.+.++ -|+.++.++.||
T Consensus       218 L~ElF~Dn~lv~~sl~gl~~al~pg  242 (311)
T PF12147_consen  218 LYELFPDNDLVRRSLAGLARALEPG  242 (311)
T ss_pred             chhhCCcHHHHHHHHHHHHHHhCCC
Confidence            999999988665 699999999987

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=89.08  E-value=1  Score=38.49  Aligned_cols=76  Identities=9%  Similarity=0.074  Sum_probs=50.2

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhccC----------CCceEEecCCCCcccCc-cceeeeehhccC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHN----------HTVVEHVSGHMFIEVPN-GQALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~----------~~rv~~~~gDff~~~P~-~d~y~l~~ILHd  193 (214)
                      ..++|+|+  |..+..+.+..-++      +..++.+...          ..++++..+|+.+ ++. -|++++..+||.
T Consensus       146 ~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~~~vL~H  224 (315)
T PLN02585        146 VTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTCLDVLIH  224 (315)
T ss_pred             CEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEEcCEEEe
Confidence            46999997  55555666543222      2233322211          2367888889754 333 499999999999


Q ss_pred             CChHHHHHHHHHhHHh
Q 042599          194 WDDEECLKILKNCCVQ  209 (214)
Q Consensus       194 w~d~~~~~IL~~~~~A  209 (214)
                      ++++....+++++...
T Consensus       225 ~p~~~~~~ll~~l~~l  240 (315)
T PLN02585        225 YPQDKADGMIAHLASL  240 (315)
T ss_pred             cCHHHHHHHHHHHHhh
Confidence            9999888899888754

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=88.77  E-value=1.3  Score=34.55  Aligned_cols=76  Identities=13%  Similarity=0.047  Sum_probs=47.6

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHH---Hhhc--cCCCceEEecCCCCcccC--ccceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLF---NQSM--HNHTVVEHVSGHMFIEVP--NGQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~---~~~~--~~~~rv~~~~gDff~~~P--~~d~y~l~~ILHdw  194 (214)
                      ...++|+|.  |..+..++...|..        +..+   +...  ...++|+++.+|..+-.+  +-|+++... +|+.
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~  121 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL  121 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence            357899996  66566666666642        1112   1111  123469999999876322  249887765 6654


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +     .+++.+.+.|+||
T Consensus       122 ~-----~~~~~~~~~Lkpg  135 (181)
T TIGR00138       122 N-----VLLELTLNLLKVG  135 (181)
T ss_pred             H-----HHHHHHHHhcCCC
Confidence            3     4778888888887

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=88.38  E-value=0.26  Score=40.85  Aligned_cols=44  Identities=14%  Similarity=0.157  Sum_probs=37.3

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF   71 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~   71 (214)
                      ||+.+|++...+.|+|+.|+..|++++++.        ++.|++++....|.
T Consensus        32 ia~~lgl~kstv~RlL~tL~~~g~v~~~~~--------~~~Y~Lg~~~~~l~   75 (263)
T PRK09834         32 LAELTGLHRTTVRRLLETLQEEGYVRRSAS--------DDSFRLTLKVRQLS   75 (263)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEEecC--------CCcEEEcHHHHHHH
Confidence            889999999999999999999999998631        57899987665443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=87.78  E-value=4.8  Score=32.75  Aligned_cols=49  Identities=8%  Similarity=-0.012  Sum_probs=43.2

Q ss_pred             CCceEEecCCCCcccC----cc--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          165 HTVVEHVSGHMFIEVP----NG--QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       165 ~~rv~~~~gDff~~~P----~~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..+|+++.+|||+--|    .+  |+++=+.+||-.+++.-.+..+++.+.|+||
T Consensus       102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg  156 (226)
T PRK13256        102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN  156 (226)
T ss_pred             cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC
Confidence            4579999999998432    13  9999999999999999999999999999997

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=87.68  E-value=0.95  Score=35.93  Aligned_cols=81  Identities=12%  Similarity=0.183  Sum_probs=51.3

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCc--c--cCcc--ceeeeehh
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFI--E--VPNG--QALFMKWI  190 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~--~--~P~~--d~y~l~~I  190 (214)
                      ...++|+|.  |..+..+++..|..        +..++.+..     ..++++++.+|+.+  +  ++.+  |++++...
T Consensus        41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~  120 (202)
T PRK00121         41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP  120 (202)
T ss_pred             CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence            356899996  66677777777753        223333221     23679999999843  2  4433  77776433


Q ss_pred             ccCCCh-------HHHHHHHHHhHHhcCCC
Q 042599          191 LSDWDD-------EECLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LHdw~d-------~~~~~IL~~~~~Al~pg  213 (214)
                      . .|..       .....+|+++.+.|+||
T Consensus       121 ~-p~~~~~~~~~~~~~~~~l~~i~~~Lkpg  149 (202)
T PRK00121        121 D-PWPKKRHHKRRLVQPEFLALYARKLKPG  149 (202)
T ss_pred             C-CCCCccccccccCCHHHHHHHHHHcCCC
Confidence            2 2321       12578999999999997

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=87.07  E-value=2.4  Score=36.49  Aligned_cols=104  Identities=14%  Similarity=0.206  Sum_probs=64.2

Q ss_pred             hhHhhHHhhhhhccHHHHHh---c--CCCceEEcc-C-CccHHHHHHhCCCc-------hHHHHhhccC-----------
Q 042599          110 ALLEGFINTLNRYYLKNALL---E--GSVPHTKAQ-S-GMDAFAAAAKDARM-------NNLFNQSMHN-----------  164 (214)
Q Consensus       110 ~~~~~f~~~m~~~~~~~~~~---~--g~~~~~dvg-G-G~~~~~~~~~~P~l-------~~v~~~~~~~-----------  164 (214)
                      ..++.||+|+..--+...+.   .  ....++|+| | |..+.-+....+..       ...++++...           
T Consensus        36 ~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~  115 (331)
T PF03291_consen   36 FHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSK  115 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-H
T ss_pred             HHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccc
Confidence            35788888876522222222   1  335689999 5 77777666665532       2233333210           


Q ss_pred             ----CCceEEecCCCCcc-----cC-c--c-ceeeeehhccC-C-ChHHHHHHHHHhHHhcCCC
Q 042599          165 ----HTVVEHVSGHMFIE-----VP-N--G-QALFMKWILSD-W-DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       165 ----~~rv~~~~gDff~~-----~P-~--~-d~y~l~~ILHd-w-~d~~~~~IL~~~~~Al~pg  213 (214)
                          .-..+++.+|-|..     ++ .  . |++-+-.-||- | +.+.++.+|+||...|+||
T Consensus       116 ~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G  179 (331)
T PF03291_consen  116 QYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG  179 (331)
T ss_dssp             TSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred             cccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence                12467889998841     23 2  2 99999999997 4 5666777999999999997

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=87.06  E-value=1.3  Score=35.89  Aligned_cols=79  Identities=13%  Similarity=0.064  Sum_probs=63.8

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhccCCCceEEecCCCCcccC--ccceeeeehhccCCChHHHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHNHTVVEHVSGHMFIEVP--NGQALFMKWILSDWDDEECL  200 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~~~rv~~~~gDff~~~P--~~d~y~l~~ILHdw~d~~~~  200 (214)
                      ..++|+|.  |...--+.+++|+-        ++.+..+....+.++|..+|.-+=.|  +.|++|-..+||=-+|.  .
T Consensus        32 ~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAvlqWlpdH--~  109 (257)
T COG4106          32 RRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAVLQWLPDH--P  109 (257)
T ss_pred             ceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhhhhhcccc--H
Confidence            35799995  77777888999964        56777777778899999999987666  46999999999866665  4


Q ss_pred             HHHHHhHHhcCCC
Q 042599          201 KILKNCCVQCNTG  213 (214)
Q Consensus       201 ~IL~~~~~Al~pg  213 (214)
                      ++|.++...|.||
T Consensus       110 ~ll~rL~~~L~Pg  122 (257)
T COG4106         110 ELLPRLVSQLAPG  122 (257)
T ss_pred             HHHHHHHHhhCCC
Confidence            7889999999887

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=85.88  E-value=1.7  Score=36.10  Aligned_cols=72  Identities=8%  Similarity=0.004  Sum_probs=45.0

Q ss_pred             CceEEccC--CccHHHHHHhCCCc-----------hHHHHhhccCCCceEEecCCCCc-ccCcc--ceeeeehhccCCCh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM-----------NNLFNQSMHNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDD  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l-----------~~v~~~~~~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d  196 (214)
                      ..++|+|.  |..+..+.+..|+.           +..+..+....+.++++.+|..+ |++.+  |+++-...      
T Consensus        87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------  160 (272)
T PRK11088         87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA------  160 (272)
T ss_pred             CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC------
Confidence            45899996  55555666665532           23444444445678999999886 55543  88764321      


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                         ...++.+++.|+||
T Consensus       161 ---~~~~~e~~rvLkpg  174 (272)
T PRK11088        161 ---PCKAEELARVVKPG  174 (272)
T ss_pred             ---CCCHHHHHhhccCC
Confidence               12356777788876

>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A

Probab=85.76  E-value=0.57  Score=29.92  Aligned_cols=44  Identities=14%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchh
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASV   66 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~   66 (214)
                      ||+.++++...+.|+++-|...|++++....  .| .....|++|+.
T Consensus        24 l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~--~d-~R~~~~~LT~~   67 (68)
T PF13463_consen   24 LAERLGISKSTVSRIIKKLEEKGLVEKERDP--HD-KRSKRYRLTPA   67 (68)
T ss_dssp             HHHHTT--HHHHHHHHHHHHHTTSEEEEEES--SC-TTSEEEEE-HH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEecCCC--Cc-CCeeEEEeCCC
Confidence            8889999999999999999999999776321  11 01246888875

>PRK00811 spermidine synthase; Provisional

Probab=85.75  E-value=3.6  Score=34.55  Aligned_cols=82  Identities=11%  Similarity=0.017  Sum_probs=49.3

Q ss_pred             CCceEEccC--CccHHHHHHhCCC-------c-hHHHHhhcc----------CCCceEEecCCCCccc--Ccc--ceeee
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDAR-------M-NNLFNQSMH----------NHTVVEHVSGHMFIEV--PNG--QALFM  187 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~-------l-~~v~~~~~~----------~~~rv~~~~gDff~~~--P~~--d~y~l  187 (214)
                      ...++++||  |..+.++++..+.       + +.+++.+..          ..+|++++.+|..+-+  +++  |++++
T Consensus        77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  156 (283)
T PRK00811         77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV  156 (283)
T ss_pred             CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence            345889997  4555566654221       1 234433321          2579999999987533  232  99887


Q ss_pred             ehhccCCChH--HHHHHHHHhHHhcCCC
Q 042599          188 KWILSDWDDE--ECLKILKNCCVQCNTG  213 (214)
Q Consensus       188 ~~ILHdw~d~--~~~~IL~~~~~Al~pg  213 (214)
                      .-.-+.-+.+  .....++.|++.|+||
T Consensus       157 D~~dp~~~~~~l~t~ef~~~~~~~L~~g  184 (283)
T PRK00811        157 DSTDPVGPAEGLFTKEFYENCKRALKED  184 (283)
T ss_pred             CCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence            5332221222  2467889999999987

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=85.63  E-value=3.5  Score=31.77  Aligned_cols=81  Identities=12%  Similarity=0.067  Sum_probs=52.5

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCcccCc-cceeeeehhccCCChH--
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDDE--  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d~--  197 (214)
                      ..++|+|.  |..+..+....+.+      +..++.+..    ..-+++++.+|+++..+. -|+++..-.+|..+++  
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~~~~  100 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLEDDLR  100 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcchhc
Confidence            45899996  55555666666532      222222211    223688999999875443 5999888777655442  


Q ss_pred             -----------------HHHHHHHHhHHhcCCC
Q 042599          198 -----------------ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 -----------------~~~~IL~~~~~Al~pg  213 (214)
                                       ...++|+++.+.|+||
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g  133 (179)
T TIGR00537       101 RGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG  133 (179)
T ss_pred             ccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence                             1467899999999986

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=85.52  E-value=1.4  Score=32.74  Aligned_cols=30  Identities=17%  Similarity=0.107  Sum_probs=27.4

Q ss_pred             cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          182 GQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       182 ~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      -|+++...+||..+|  ...+|+++.+.|+||
T Consensus        79 fD~i~~~~~l~~~~d--~~~~l~~l~~~Lkpg  108 (161)
T PF13489_consen   79 FDLIICNDVLEHLPD--PEEFLKELSRLLKPG  108 (161)
T ss_dssp             EEEEEEESSGGGSSH--HHHHHHHHHHCEEEE
T ss_pred             hhhHhhHHHHhhccc--HHHHHHHHHHhcCCC
Confidence            499999999999995  789999999999985

...

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=85.41  E-value=2.2  Score=35.11  Aligned_cols=81  Identities=14%  Similarity=0.093  Sum_probs=50.4

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhc-----cCCCceEEecCCCCcccCc--cceeee------eh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM-----HNHTVVEHVSGHMFIEVPN--GQALFM------KW  189 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~-----~~~~rv~~~~gDff~~~P~--~d~y~l------~~  189 (214)
                      ..++|+|.  |.....++...|..        +..++.+.     ....+++++.+|++++.+.  -|+++.      ..
T Consensus       110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~~~~  189 (275)
T PRK09328        110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYIPEA  189 (275)
T ss_pred             CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcCCcc
Confidence            46899995  55566777776643        22222222     1245899999999987763  387764      12


Q ss_pred             hccCCCh------------------HHHHHHHHHhHHhcCCC
Q 042599          190 ILSDWDD------------------EECLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d------------------~~~~~IL~~~~~Al~pg  213 (214)
                      .++..++                  +.-.+|++++.+.|+||
T Consensus       190 ~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~g  231 (275)
T PRK09328        190 DIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPG  231 (275)
T ss_pred             hhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccC
Confidence            2221211                  33478899999999886

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=85.09  E-value=6.7  Score=30.83  Aligned_cols=75  Identities=11%  Similarity=0.019  Sum_probs=48.0

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhc-----cCCCceEEecCCCCcccC--ccceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM-----HNHTVVEHVSGHMFIEVP--NGQALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~-----~~~~rv~~~~gDff~~~P--~~d~y~l~~ILHdw~  195 (214)
                      ..++|+|.  |..+..++.+.|..        +..++.+.     ...+.++++.+|..+..+  +-|+++...+ .   
T Consensus        47 ~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~---  122 (187)
T PRK00107         47 ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A---  122 (187)
T ss_pred             CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c---
Confidence            56899996  55556667666643        12222221     123459999999876322  2499998642 2   


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                        ....+++.+++.|+||
T Consensus       123 --~~~~~l~~~~~~LkpG  138 (187)
T PRK00107        123 --SLSDLVELCLPLLKPG  138 (187)
T ss_pred             --CHHHHHHHHHHhcCCC
Confidence              3456889999999987

>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element

Probab=85.01  E-value=0.54  Score=32.33  Aligned_cols=43  Identities=16%  Similarity=0.196  Sum_probs=36.2

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF   71 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~   71 (214)
                      ||+.++++...+.|+++.|...|++...+         ...|.+|+.+..+.
T Consensus         5 la~~l~is~stvs~~l~~L~~~glI~r~~---------~~~~~lT~~g~~~~   47 (96)
T smart00529        5 IAERLNVSPPTVTQMLKKLEKDGLVEYEP---------YRGITLTEKGRRLA   47 (96)
T ss_pred             HHHHhCCChHHHHHHHHHHHHCCCEEEcC---------CCceEechhHHHHH
Confidence            57788999999999999999999999861         35788888877654

iron dependent repressor

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=84.81  E-value=5  Score=32.13  Aligned_cols=80  Identities=13%  Similarity=0.039  Sum_probs=54.2

Q ss_pred             ceEEcc-C-CccHHHHHHhCCCch--------H---HHHhhc--cCCCce-EEecCCCCcc-cC---------cc-ceee
Q 042599          134 PHTKAQ-S-GMDAFAAAAKDARMN--------N---LFNQSM--HNHTVV-EHVSGHMFIE-VP---------NG-QALF  186 (214)
Q Consensus       134 ~~~dvg-G-G~~~~~~~~~~P~l~--------~---v~~~~~--~~~~rv-~~~~gDff~~-~P---------~~-d~y~  186 (214)
                      .++.|| | |+.+..+++..|++.        .   -|+.-.  ...+++ ..+.-|.-++ .|         .. |+++
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            477888 5 888999999999761        1   121111  111121 2233344432 11         23 9999


Q ss_pred             eehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          187 MKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       187 l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .-+++|--+-+.+..+++.+.+.|+||
T Consensus       108 ~~N~lHI~p~~~~~~lf~~a~~~L~~g  134 (204)
T PF06080_consen  108 CINMLHISPWSAVEGLFAGAARLLKPG  134 (204)
T ss_pred             ehhHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999987

The function of this family is unknown.

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=84.69  E-value=0.45  Score=30.72  Aligned_cols=28  Identities=11%  Similarity=0.111  Sum_probs=27.1

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCN   47 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~   47 (214)
                      ||+.+|++...+.+.|+-|...|+++..
T Consensus        28 Ia~~l~i~~~~v~~~L~~L~~~GlV~~~   55 (68)
T PF01978_consen   28 IAEELGISRSTVYRALKSLEEKGLVERE   55 (68)
T ss_dssp             HHHHHTSSHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence            8999999999999999999999999987

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=84.60  E-value=0.5  Score=31.90  Aligned_cols=40  Identities=18%  Similarity=0.224  Sum_probs=31.6

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchh
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASV   66 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~   66 (214)
                      ||+.+++++..++++|..|...|+++..+  +     .+|.|.++.-
T Consensus        31 iA~~~~i~~~~l~kil~~L~~~Gli~s~~--G-----~~GGy~L~~~   70 (83)
T PF02082_consen   31 IAERLGISPSYLRKILQKLKKAGLIESSR--G-----RGGGYRLARP   70 (83)
T ss_dssp             HHHHHTS-HHHHHHHHHHHHHTTSEEEET--S-----TTSEEEESS-
T ss_pred             HHHHHCcCHHHHHHHHHHHhhCCeeEecC--C-----CCCceeecCC
Confidence            99999999999999999999999998753  1     1467877654

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=83.82  E-value=2.5  Score=35.82  Aligned_cols=90  Identities=14%  Similarity=0.129  Sum_probs=66.3

Q ss_pred             HHHHHhcCCCceEEccCCccHHHHHHhCCC--------chHHHHhhcc--------CCCceEEecCCCC-cccCc-----
Q 042599          124 LKNALLEGSVPHTKAQSGMDAFAAAAKDAR--------MNNLFNQSMH--------NHTVVEHVSGHMF-IEVPN-----  181 (214)
Q Consensus       124 ~~~~~~~g~~~~~dvgGG~~~~~~~~~~P~--------l~~v~~~~~~--------~~~rv~~~~gDff-~~~P~-----  181 (214)
                      +.+++..|..++|-+|.|.....+.-.+|.        +|+|++--..        ...++.+|+.||+ +..|+     
T Consensus        85 ~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~  164 (297)
T COG3315          85 VRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAA  164 (297)
T ss_pred             HHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhc
Confidence            445666776788999888777766655663        4666653221        1238999999999 44331     


Q ss_pred             c------ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          182 G------QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       182 ~------d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |      -+.++-.+|--.+.+...++|++|....+||
T Consensus       165 G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~g  202 (297)
T COG3315         165 GFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPG  202 (297)
T ss_pred             CCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCC
Confidence            2      4788888999999999999999999999887

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=83.57  E-value=3.9  Score=32.47  Aligned_cols=80  Identities=10%  Similarity=0.038  Sum_probs=52.1

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CC-CceEEecCCCCcc---cCc-cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NH-TVVEHVSGHMFIE---VPN-GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~-~rv~~~~gDff~~---~P~-~d~y~l~~ILHdw  194 (214)
                      ...++|+|.  |.....+++..++.      +..+..+..    .. .+++++.+|+.+-   .|. .|++++.+++|..
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~  125 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV  125 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence            356899996  55555555554433      222322211    11 2588888887642   222 4999999999998


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+.+  .+|+++++.|+||
T Consensus       126 ~~~~--~~l~~~~~~L~~g  142 (224)
T TIGR01983       126 PDPQ--AFIRACAQLLKPG  142 (224)
T ss_pred             CCHH--HHHHHHHHhcCCC
Confidence            8765  6899999999886

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK01581 speE spermidine synthase; Validated

Probab=82.92  E-value=4.9  Score=35.18  Aligned_cols=80  Identities=4%  Similarity=-0.053  Sum_probs=49.6

Q ss_pred             CceEEccC--CccHHHHHHhCC-------Cc-hHHHHhhcc------------CCCceEEecCCCCcccC--c-c-ceee
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA-------RM-NNLFNQSMH------------NHTVVEHVSGHMFIEVP--N-G-QALF  186 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P-------~l-~~v~~~~~~------------~~~rv~~~~gDff~~~P--~-~-d~y~  186 (214)
                      ..++++||  |..+.++++..|       |+ +.+++.+..            ..+|++++.+|-++-++  . . |+++
T Consensus       152 krVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVII  231 (374)
T PRK01581        152 KRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVII  231 (374)
T ss_pred             CEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEE
Confidence            45889987  444555665333       22 345554432            25799999999886443  2 2 8888


Q ss_pred             eehhccCC----ChHHHHHHHHHhHHhcCCC
Q 042599          187 MKWILSDW----DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       187 l~~ILHdw----~d~~~~~IL~~~~~Al~pg  213 (214)
                      +-- ....    +.-.....++.|++.|+||
T Consensus       232 vDl-~DP~~~~~~~LyT~EFy~~~~~~LkPg  261 (374)
T PRK01581        232 IDF-PDPATELLSTLYTSELFARIATFLTED  261 (374)
T ss_pred             EcC-CCccccchhhhhHHHHHHHHHHhcCCC
Confidence            762 1111    1133467899999999987

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=82.57  E-value=0.89  Score=29.56  Aligned_cols=39  Identities=21%  Similarity=0.135  Sum_probs=32.4

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecch
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLAS   65 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~   65 (214)
                      ||+.+|++...+.|+|..|...|+++...+       .++.|..+.
T Consensus        28 La~~lgl~~~~v~r~L~~L~~~G~V~~~~~-------~~~~W~i~~   66 (68)
T smart00550       28 LAKNLGLPKKEVNRVLYSLEKKGKVCKQGG-------TPPLWKLTD   66 (68)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCEEecCC-------CCCceEeec
Confidence            999999999999999999999999987521       146777654

Helix-turn-helix-containing domain. Also known as Zab.

>PF14394 DUF4423: Domain of unknown function (DUF4423)

Probab=82.35  E-value=1.5  Score=34.10  Aligned_cols=59  Identities=12%  Similarity=0.048  Sum_probs=48.3

Q ss_pred             hhhHHHHHHHHhCchh-HH--cCCCC--CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccc
Q 042599            2 VLPMTMKTAIQLGVLE-IM--LPKNN--KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRY   69 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd-~L--LA~~~--~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~   69 (214)
                      |...+++..+.+.=|. -.  ||+++  +++++-++.-|..|..+|+++.+     +    +|.|..|..+-.
T Consensus        24 W~~~~ir~l~~l~~~~~d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~-----~----~g~y~~t~~~l~   87 (171)
T PF14394_consen   24 WYHPAIRELLPLMPFAPDPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKD-----G----DGKYVQTDKSLT   87 (171)
T ss_pred             hHHHHHHHHhhcCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEC-----C----CCcEEEecceee
Confidence            5566777777777665 33  99999  99999999999999999999997     2    678988876544

>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A

Probab=82.14  E-value=0.96  Score=30.48  Aligned_cols=57  Identities=18%  Similarity=0.240  Sum_probs=37.9

Q ss_pred             HhCchhHH----------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599           12 QLGVLEIM----------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus        12 ~lgifd~L----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      +++|...|          |.+.+|++...|.+-|+.|...|+++..++.  ..+.....|++|+.++..
T Consensus         2 Rl~Il~~L~~~~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~--~~~~p~t~~~lT~~Gr~~   68 (80)
T PF13601_consen    2 RLAILALLYANEEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEF--EGRRPRTWYSLTDKGREA   68 (80)
T ss_dssp             HHHHHHHHHHHSEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE---SSS--EEEEEE-HHHHHH
T ss_pred             HHHHHHHHhhcCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEec--cCCCCeEEEEECHHHHHH
Confidence            45555565          8889999999999999999999999976431  100012358888887653

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=81.61  E-value=3.6  Score=32.19  Aligned_cols=77  Identities=9%  Similarity=-0.007  Sum_probs=47.0

Q ss_pred             CceEEccC--CccHHHHHHhCC------Cc-hHHHHhhccCCCceEEecCCCCc---ccCc--cceeeeehhccCCChHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA------RM-NNLFNQSMHNHTVVEHVSGHMFI---EVPN--GQALFMKWILSDWDDEE  198 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P------~l-~~v~~~~~~~~~rv~~~~gDff~---~~P~--~d~y~l~~ILHdw~d~~  198 (214)
                      ..++|+|.  |.....+.+...      +. +..+..+..  .+++++.+|+.+   +++.  .|++++..+||..+|  
T Consensus        15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~--~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d--   90 (194)
T TIGR02081        15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA--RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN--   90 (194)
T ss_pred             CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH--cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC--
Confidence            57899996  544444433321      11 122322222  357888888865   3443  499999999998876  


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                      -.++|+++.+.++++
T Consensus        91 ~~~~l~e~~r~~~~~  105 (194)
T TIGR02081        91 PEEILDEMLRVGRHA  105 (194)
T ss_pred             HHHHHHHHHHhCCeE
Confidence            345677777766543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG3432 Predicted transcriptional regulator [Transcription]

Probab=80.69  E-value=2.1  Score=29.94  Aligned_cols=47  Identities=9%  Similarity=0.173  Sum_probs=36.5

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP   72 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~   72 (214)
                      |.-.++++-....+++..|+..|++...+      ++....|..|+.+..+..
T Consensus        37 i~y~aNlny~~~~~yi~~L~~~Gli~~~~------~~~~~~y~lT~KG~~fle   83 (95)
T COG3432          37 IIYGANLNYKRAQKYIEMLVEKGLIIKQD------NGRRKVYELTEKGKRFLE   83 (95)
T ss_pred             eeeecCcCHHHHHHHHHHHHhCCCEEecc------CCccceEEEChhHHHHHH
Confidence            66678999999999999999999766642      111237999999987753

>TIGR00536 hemK_fam HemK family putative methylases

Probab=80.68  E-value=7  Score=32.67  Aligned_cols=81  Identities=10%  Similarity=-0.013  Sum_probs=51.3

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeee------
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMK------  188 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~------  188 (214)
                      ..++|+|.  |..+..++...|..        +..++.+..      ...+++++.+|+++++|.  -|+++.-      
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            46899996  55556677777743        222322221      124699999999987764  3776642      


Q ss_pred             -------hhccCCCh----------HHHHHHHHHhHHhcCCC
Q 042599          189 -------WILSDWDD----------EECLKILKNCCVQCNTG  213 (214)
Q Consensus       189 -------~ILHdw~d----------~~~~~IL~~~~~Al~pg  213 (214)
                             .+++..|.          +...+|++++.+.|+||
T Consensus       196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g  237 (284)
T TIGR00536       196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN  237 (284)
T ss_pred             chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC
Confidence                   33332221          35778999999999886

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=80.57  E-value=7  Score=33.71  Aligned_cols=47  Identities=13%  Similarity=0.225  Sum_probs=37.3

Q ss_pred             ceEEecCCCCc-----cc----CccceeeeehhccC-CC-hHHHHHHHHHhHHhcCCC
Q 042599          167 VVEHVSGHMFI-----EV----PNGQALFMKWILSD-WD-DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       167 rv~~~~gDff~-----~~----P~~d~y~l~~ILHd-w~-d~~~~~IL~~~~~Al~pg  213 (214)
                      .+.|..+|=|.     -+    |+-|++-....+|- |. .+.++..|+|+++.|+||
T Consensus       173 ~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG  230 (389)
T KOG1975|consen  173 TAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG  230 (389)
T ss_pred             eeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence            47889998773     12    23599999999997 65 566888899999999998

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=80.47  E-value=2.3  Score=36.50  Aligned_cols=49  Identities=10%  Similarity=0.112  Sum_probs=39.3

Q ss_pred             CCceE--EecCCCCcc---cC-----c-c-ceeeeehhccCCChHHHHHHHHHhHH-hcCCC
Q 042599          165 HTVVE--HVSGHMFIE---VP-----N-G-QALFMKWILSDWDDEECLKILKNCCV-QCNTG  213 (214)
Q Consensus       165 ~~rv~--~~~gDff~~---~P-----~-~-d~y~l~~ILHdw~d~~~~~IL~~~~~-Al~pg  213 (214)
                      .+.|+  -+.|||.++   +|     . . -++++...+.|++++++..+|+++++ .|.||
T Consensus       129 ~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~  190 (319)
T TIGR03439       129 FSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS  190 (319)
T ss_pred             CCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence            34454  489999763   22     1 2 68889999999999999999999999 99886

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=80.16  E-value=0.63  Score=27.75  Aligned_cols=26  Identities=15%  Similarity=0.233  Sum_probs=23.5

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCccee
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLT   45 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~   45 (214)
                      ||+.+|++...+.+.++-|...|+++
T Consensus        23 la~~~~is~~tv~~~l~~L~~~g~I~   48 (48)
T PF13412_consen   23 LAEKLGISRSTVNRYLKKLEEKGLIE   48 (48)
T ss_dssp             HHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence            89999999999999999999999874

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		9e-34
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		3e-30
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		9e-30
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		9e-11
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		5e-07
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		1e-06
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		1e-06
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		1e-06
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		1e-06
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		1e-06
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		5e-06
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		7e-06

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  139 bits (351), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 96/266 (36%), Positives = 123/266 (46%), Gaps = 71/266 (26%)
Query: 1   AVLPMTMKTAIQLGVLEIM------------------LPKNNKETPIILDRMLRLLASYS 42
           AVLPM +K AI+L VLEIM                  LP  N E P++LDR+LRLLASYS
Sbjct: 32  AVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYS 91
Query: 43  FLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQH 102
            +T  L   +  G  +RLYGLA V ++   NEDGVSLAP LL+  DKV ++ W       
Sbjct: 92  VVTYTL-RELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPW------- 143
Query: 103 SYLCMKDALLEGFINTLNRYYLKNAL---------------------------------- 128
               +KDA+LEG I   N+ Y  N                                    
Sbjct: 144 --FYLKDAILEGGI-PFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNG 200
Query: 129 LEG--SVPHTKAQSGMXXXXXXXXXXRMNNL-FN-----QSMHNHTVVEHVSGHMFIEVP 180
            EG  ++      +G            +N + F+     Q     + VEH+ G MF  VP
Sbjct: 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVP 260
Query: 181 NGQALFMKWILSDWDDEECLKILKNC 206
            G A+F+KWI  DW DE CLK+LKNC
Sbjct: 261 KGDAIFIKWICHDWSDEHCLKLLKNC 286

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 127/282 (45%), Gaps = 104/282 (36%)
Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +K+A++L +LEI+                 LP  N + P++LDRMLRLLA Y  
Sbjct: 30  SVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYII 89
Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           LTC++ T  +DG  QRLYGLA+V++Y   NEDGVS++   L+ QDKV M+SW        
Sbjct: 90  LTCSVRTQ-QDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESW-------- 140
Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMXXXXXXXXXXRMNNLFNQSMH 163
                             Y+LK+A+L+G +P  KA  GM          R N +FN+ M 
Sbjct: 141 ------------------YHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMS 181
Query: 164 NHT------VVEHVSG------------------------------------HMFIEVPN 181
           +H+      ++E  +G                                    H+  + P+
Sbjct: 182 DHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPS 241
Query: 182 -------GQALFM----------KWILSDWDDEECLKILKNC 206
                  G  +F+          KWI  DW DE CLK LKNC
Sbjct: 242 YPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNC 283

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  126 bits (316), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 123/265 (46%), Gaps = 70/265 (26%)
Query: 1   AVLPMTMKTAIQLGVLEIMLPKNNK-----------------ETPIILDRMLRLLASYSF 43
           +VLPMT+K AI+LG+LEI++    K                 E P ++DR+LRLLASY+ 
Sbjct: 31  SVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNV 90
Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           +TC L    KDG   R YG A V ++  PNEDGVS+A   L+ QDKV M+SW        
Sbjct: 91  VTC-LVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESW-------- 141
Query: 104 YLCMKDALLEGFIN-----------------TLNRYY---LKN-------ALLE------ 130
              +KDA+L+G I                    NR +   +KN        LLE      
Sbjct: 142 -YYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFE 200
Query: 131 ---------GSVPHTKAQSGMXXXXXXXXXXRMNNLFNQSMHNHTVVEHVSGHMFIEVPN 181
                    G V  T A               + ++ +++      V HV G MF EVP+
Sbjct: 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ-FPGVTHVGGDMFKEVPS 259
Query: 182 GQALFMKWILSDWDDEECLKILKNC 206
           G  + MKWIL DW D+ C  +LKNC
Sbjct: 260 GDTILMKWILHDWSDQHCATLLKNC 284

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 47/181 (25%)
Query: 2   VLPMTMKTAIQLGVLEIM------------------LPKNNKET--PIILDRMLRLLASY 41
           V P  +  AI L + EI+                  LP + + +  P  LDRMLRLLASY
Sbjct: 36  VYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY 95
Query: 42  SFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQ 101
           S LT    T I+DG A+R+YGL+ V +Y  P+E    LA                  +T 
Sbjct: 96  SVLTSTTRT-IEDGGAERVYGLSMVGKYLVPDESRGYLA-----------------SFT- 136
Query: 102 HSYLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMXXXXXXXXXXRMNNLFNQS 161
            ++LC   ALL+ ++N       K A+++  +   K   G+          +MN +FN+S
Sbjct: 137 -TFLCYP-ALLQVWMN------FKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKS 188
Query: 162 M 162
           M
Sbjct: 189 M 189

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           +EHV G MF  VP G A+ +K +  +W DE+C++ L NC
Sbjct: 254 IEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNC 292

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 171 VSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           V G MF  +P+  A+ +KW+L DW+DE+ LKILKN 
Sbjct: 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNS 276

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 171 VSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           V G MF  +P+  A+ +KW+L DW+DE+ LKILKN 
Sbjct: 240 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNS 275

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 171 VSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           V G MF  +P+  A+ +KW+L DW+DE+ LKILKN 
Sbjct: 237 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNS 272

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 170 HVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           +V G MFI VP   A+ +K +L DW D++C+KILK C
Sbjct: 240 YVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKC 276

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 170 HVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           +V G MF  +PN  A+ +K+IL +W D++CL+ILK C
Sbjct: 235 YVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKC 271

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           +EHV G  F  VP G A  +K +  +W DE+C++ L NC
Sbjct: 254 IEHVGGDXFASVPQGDAXILKAVCHNWSDEKCIEFLSNC 292

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 170 HVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           +V G  F  +PN  A+ +K+IL +W D++CL+ILK C
Sbjct: 235 YVGGDXFTSIPNADAVLLKYILHNWTDKDCLRILKKC 271

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	1e-32
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	2e-30
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	3e-28
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	9e-16
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	1e-25
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	9e-16
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	5e-25
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	1e-15
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	2e-20
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	2e-19
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	4e-16
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	3e-19
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	1e-14
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	1e-18
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	3e-14
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	2e-18
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	1e-14
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	9e-18
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	2e-14
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	5e-17
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	7e-15
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	1e-12
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	4e-08
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	4e-12
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	2e-08
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  119 bits (301), Expect = 1e-32
 Identities = 48/278 (17%), Positives = 82/278 (29%), Gaps = 107/278 (38%)

Query: 2   VLPMTMKTAIQLGVLEIMLP--------------KNNKETPIILDRMLRLLASYSFLTCN 47
           +  M++K A+++ +  I+                +        + R++R LA   F    
Sbjct: 28  IDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEI- 86

Query: 48  LATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCM 107
                     +  Y L   S       D   LAP +  + D     S+            
Sbjct: 87  ------ITKEEESYALTVASELLVRGSDL-CLAPMVECVLDPTLSGSY------------ 127

Query: 108 KDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHT- 166
                         + LK  + E  +       G   +    K+   N  FN +M + + 
Sbjct: 128 --------------HELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSK 173

Query: 167 -------------------------------------------------VVEHVSGH--- 174
                                                            VVE++SG    
Sbjct: 174 LINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 233

Query: 175 ------MFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
                 MF  +PN  A+ +K+IL +W D++CL+ILK C
Sbjct: 234 TYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKC 271

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  113 bits (285), Expect = 2e-30
 Identities = 50/281 (17%), Positives = 85/281 (30%), Gaps = 102/281 (36%)

Query: 2   VLPMTMKTAIQLGVLEIMLPKN--------------NKETPIILDRMLRLLASYSFLTCN 47
           V  M +K+A++LG+ + +                  +     IL R LRLL    F    
Sbjct: 22  VSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81

Query: 48  LAT-NIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLC 106
           +      D   +  Y L   S+     +    L+  +       ++D W+          
Sbjct: 82  IVKGKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSIVKGALHPSSLDMWS---------S 131

Query: 107 MKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNL--FNQSMHN 164
            K    E                +       A  G   +    KD+  + L  F  +M +
Sbjct: 132 SKKWFNED---------------KEQTLFECAT-GESFWDFLNKDSESSTLSMFQDAMAS 175

Query: 165 HT--------------------------------------------------VVEHVSGH 174
            +                                                  VV +++G+
Sbjct: 176 DSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN 235

Query: 175 ---------MFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
                    MF  +P+  A+ +KW+L DW+DE+ LKILKN 
Sbjct: 236 ENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNS 276

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  108 bits (271), Expect = 3e-28
 Identities = 79/224 (35%), Positives = 108/224 (48%), Gaps = 63/224 (28%)

Query: 2   VLPMTMKTAIQLGVLEIM------------------LPKNNKETPIILDRMLRLLASYSF 43
           VLPM +K AI+L VLEIM                  LP  N E P++LDR+LRLLASYS 
Sbjct: 33  VLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSV 92

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
           +T  L   +  G  +RLYGLA V ++   NEDGVSLAP LL+  DKV ++ W        
Sbjct: 93  VTYTLRE-LPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPW-------- 143

Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMH 163
                             +YLK+A+LEG +P  KA  GM+ F     D R+N +FN+ M 
Sbjct: 144 ------------------FYLKDAILEGGIPFNKAY-GMNIFDYHGTDHRINKVFNKGMS 184

Query: 164 NHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCC 207
           +++                  + MK IL  ++  E L  + +  
Sbjct: 185 SNS-----------------TITMKKILEMYNGFEGLTTIVDVG 211

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score = 73.7 bits (181), Expect = 9e-16
 Identities = 25/39 (64%), Positives = 29/39 (74%)

Query: 168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           VEH+ G MF  VP G A+F+KWI  DW DE CLK+LKNC
Sbjct: 248 VEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNC 286

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  101 bits (253), Expect = 1e-25
 Identities = 78/223 (34%), Positives = 105/223 (47%), Gaps = 62/223 (27%)

Query: 2   VLPMTMKTAIQLGVLEIML-----------------PKNNKETPIILDRMLRLLASYSFL 44
           VLPMT+K AI+LG+LEI++                    N E P ++DR+LRLLASY+ +
Sbjct: 32  VLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVV 91

Query: 45  TCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSY 104
           TC +    KDG   R YG A V ++  PNEDGVS+A   L+ QDKV M+SW         
Sbjct: 92  TCLVEEG-KDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESW--------- 141

Query: 105 LCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHN 164
                            YYLK+A+L+G +P  KA  GM AF     D R N +FN+ M N
Sbjct: 142 -----------------YYLKDAVLDGGIPFNKAY-GMSAFEYHGTDPRFNRVFNEGMKN 183

Query: 165 HTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCC 207
           H+                  +  K +L  +   E L  L +  
Sbjct: 184 HS-----------------IIITKKLLELYHGFEGLGTLVDVG 209

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score = 73.7 bits (181), Expect = 9e-16
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query: 168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           V HV G MF EVP+G  + MKWIL DW D+ C  +LKNC
Sbjct: 246 VTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNC 284

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score = 99.5 bits (248), Expect = 5e-25
 Identities = 56/226 (24%), Positives = 83/226 (36%), Gaps = 64/226 (28%)

Query: 2   VLPMTMKTAIQLGVLEIM--------------------LPKNNKETPIILDRMLRLLASY 41
           V P  +  AI L + EI+                        + + P  LDRMLRLLASY
Sbjct: 36  VYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY 95

Query: 42  SFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQ 101
           S LT    T I+DG A+R+YGL+ V +Y  P+E    LA     +     +  W      
Sbjct: 96  SVLTSTTRT-IEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVW------ 148

Query: 102 HSYLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQS 161
                                  K A+++  +   K   G+  +    KD +MN +FN+S
Sbjct: 149 --------------------MNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKS 188

Query: 162 MHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCC 207
           M +                   A  MK +L  +   E +  L +  
Sbjct: 189 MVDVC-----------------ATEMKRMLEIYTGFEGISTLVDVG 217

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score = 73.7 bits (181), Expect = 1e-15
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           +EHV G MF  VP G A+ +K +  +W DE+C++ L NC
Sbjct: 254 IEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNC 292

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 86.7 bits (215), Expect = 2e-20
 Identities = 30/250 (12%), Positives = 68/250 (27%), Gaps = 55/250 (22%)

Query: 2   VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNI 52
                +K A++L V   +         L +  + +   +  +   L    F+T       
Sbjct: 18  QRSAAIKAAVELNVFTAISQGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ----- 72

Query: 53  KDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWAC----------KYTQH 102
                   Y L S S  F   +    +   +  +   +  + +              +  
Sbjct: 73  -----AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAISSE 127

Query: 103 SYLCMKDALLEGFINTLNRYYLKNA-LLEGSVPHTKAQSG--MD----------AFAAAA 149
             L  +  +   F   ++      A L+   V   K +    +D          A A   
Sbjct: 128 GTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN 187

Query: 150 KDARMNNL--------FNQSMHNHTV---VEHVSGHMFIEVPNGQA--LFMKWILSDWDD 196
            +A +  +          ++     V      ++G  F          + +   L  +D 
Sbjct: 188 PNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDV 247

Query: 197 EECLKILKNC 206
             C ++L+  
Sbjct: 248 ATCEQLLRKI 257

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 47/177 (26%)

Query: 2   VLPMTMKTAIQLGVLEIML--PKNNKE-------TPIILDRMLRLLASYSFLTCNLATNI 52
                ++ A  +GV + ++  P+   E           L R+LRLLA    +        
Sbjct: 34  TYAAALRAAAAVGVADHLVDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE------ 87

Query: 53  KDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALL 112
               +   + L         +   V     +L+  D +                      
Sbjct: 88  ----SDGRFALTDKGAALRSD-SPVPARAGILMFTDTMFWTMS----------------- 125

Query: 113 EGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHTVVE 169
                    + + +AL            G    A    DA +  L+ + M   +  E
Sbjct: 126 ---------HRVASALGPERPAFADIF-GSSLDAYFDGDAEVEALYYEGMETVSAAE 172

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score = 74.6 bits (184), Expect = 4e-16
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
            + V G    EVP+     +K IL +W DE+ ++IL NC
Sbjct: 234 WKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNC 272

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score = 83.6 bits (207), Expect = 3e-19
 Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 45/177 (25%)

Query: 2   VLPMTMKTAIQLGVLEIML--PKNNKE-------TPIILDRMLRLLASYSFLTCNLATNI 52
                +  A++LGV E++   P+               L R+LRLLA+            
Sbjct: 50  WKARAIHVAVELGVPELLQEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDL----- 104

Query: 53  KDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALL 112
                  L+   ++S    P+     +A          +  +W                 
Sbjct: 105 ---GHDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHWRAW----------------- 143

Query: 113 EGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHTVVE 169
                      L +++  G      A  G   +    +D +   LFN++M + ++ E
Sbjct: 144 ---------EQLTHSVRTGEASFDVAN-GTSFWQLTHEDPKARELFNRAMGSVSLTE 190

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 168 VEHVSGHMFIEVPNG-QALFMKWILSDWDDEECLKILKNC 206
            E + G  F  +P+G     +K +L DWDD++ ++IL+  
Sbjct: 254 CEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRI 293

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score = 81.7 bits (202), Expect = 1e-18
 Identities = 21/177 (11%), Positives = 41/177 (23%), Gaps = 43/177 (24%)

Query: 2   VLPMTMKTAIQLGVLEIML--PKNNKE-------TPIILDRMLRLLASYSFLTCNLATNI 52
           V PM ++ A  L +++ +L                P  L R++R L     L        
Sbjct: 28  VTPMALRVAATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEG------ 81

Query: 53  KDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALL 112
                 R      +             A   L         ++                 
Sbjct: 82  -GEKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAF----------------- 123

Query: 113 EGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHTVVE 169
                      L + +  G   +     G   +   + D  + + F+  M     + 
Sbjct: 124 ---------TGLLDVVRTGRPAYAGRY-GRPFWEDLSADVALADSFDALMSCDEDLA 170

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 168 VEHVSGHMFIEVPNG-QALFMKWILSDWDDEECLKILKNC 206
           V    G  F  +P     + + ++L +W DE+ L IL+ C
Sbjct: 234 VTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGC 273

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 25/177 (14%), Positives = 45/177 (25%), Gaps = 45/177 (25%)

Query: 2   VLPMTMKTAIQLGVLEIML--PKNNKE-------TPIILDRMLRLLASYSFLTCNLATNI 52
             PM ++TA  L +++ +L   +  K         P  L R++R L +   L        
Sbjct: 31  HTPMVVRTAATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEE------ 84

Query: 53  KDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALL 112
               A   +    V      +      A   L         S+                 
Sbjct: 85  ---DAPGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISF----------------- 124

Query: 113 EGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHTVVE 169
                      L +A+  G   +     G   +   A    +   F+  +     V 
Sbjct: 125 ---------TRLPDAIRTGRPTYESIY-GKPFYEDLAGRPDLRASFDSLLACDQDVA 171

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 168 VEHVSGHMFIEVPNG-QALFMKWILSDWDDEECLKILKNC 206
           V+ V G  F  +P    A+ + ++L +W D + ++IL  C
Sbjct: 235 VDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRC 274

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score = 79.2 bits (196), Expect = 9e-18
 Identities = 22/176 (12%), Positives = 47/176 (26%), Gaps = 48/176 (27%)

Query: 2   VLPMTMKTAIQLGVLEIML--PKNNKE-------TPIILDRMLRLLASYSFLTCNLATNI 52
                +  A +LG+ +++     +++            + R++RLL ++           
Sbjct: 20  WKSRCVYVATRLGLADLIESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQG------ 73

Query: 53  KDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALL 112
                +  Y     S      E   S    +L   ++    +W                 
Sbjct: 74  ---DTRDGYANTPTSHLLRDVEG--SFRDMVLFYGEEF-HAAW----------------- 110

Query: 113 EGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHTVV 168
                         ALL G+     A  G D ++   +       F  +M    + 
Sbjct: 111 ---------TPACEALLSGTPGFELA-FGEDFYSYLKRCPDAGRRFLLAMKASNLA 156

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 168 VEHVSGHMFIEVP-NGQALFMKWILSDWDDEECLKILKNC 206
           V  V G M  EVP NG    +  I+ D D+   L++L NC
Sbjct: 219 VSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNC 258

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score = 76.9 bits (190), Expect = 5e-17
 Identities = 24/177 (13%), Positives = 47/177 (26%), Gaps = 45/177 (25%)

Query: 2   VLPMTMKTAIQLGVLEIML--PKNNKE-------TPIILDRMLRLLASYSFLTCNLATNI 52
             PM ++ A  L V + +    +   E           LDR+LR L +    T +     
Sbjct: 17  ATPMAVRVAATLRVADHIAAGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRD----- 71

Query: 53  KDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALL 112
                Q +YGL         +          +          +                 
Sbjct: 72  ----GQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGF----------------- 110

Query: 113 EGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHTVVE 169
                      L +++  G   +     G   +     D  ++  F+  M +H  ++
Sbjct: 111 ---------VELAHSIRTGQPAYPVRY-GTSFWEDLGSDPVLSASFDTLMSHHLELD 157

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 168 VEHVSGHMFIEVPNG-QALFMKWILSDWDDEECLKILKNC 206
            + V G  F  +P G     +  +L DWDD   + IL+ C
Sbjct: 221 AQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRC 260

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 168 VEHVSGHMFIE-VPNGQALFMKWILSDWDDEECLKILKNC 206
           +  ++  ++ E  P   A+    IL   +++    + K  
Sbjct: 242 MRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKA 281

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 25/175 (14%), Positives = 46/175 (26%), Gaps = 52/175 (29%)

Query: 2   VLPMTMKTAIQLGVLEIML--PKNNKE-------TPIILDRMLRLLASYSFLTCNLATNI 52
           +    MK AI+L +   M   PK+           P  L+ +L  L     +        
Sbjct: 43  IEFSCMKAAIELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINL------ 96

Query: 53  KDGSAQRLYGLASVSRYFF-PNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDAL 111
           +DG     + L   + Y F P     +L  T +        D +        Y+ +  A+
Sbjct: 97  EDG----KWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDF--------YMGLSQAV 144

Query: 112 LEGFINTLNRYYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHT 166
                                      ++              N  F +   ++ 
Sbjct: 145 RGQ------------------------KNFKGQVPYPPVTREDNLYFEEIHRSNA 175

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 23/250 (9%), Positives = 63/250 (25%), Gaps = 57/250 (22%)

Query: 2   VLPMTMKTAIQLGVLEIML-PKNNKE-------TPIILDRMLRLLASYSFLTCNLATNIK 53
                +  A+   + ++    +   E              +L  LA+   LT        
Sbjct: 36  RQSAILHYAVADKLFDLTQTGRTPAEVAASFGMVEGKAAILLHALAALGLLTK------- 88

Query: 54  DGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWAC-----------KYTQH 102
                  +   +++  +        + P +      +  D+W              + Q 
Sbjct: 89  ---EGDAFRNTALTERYLTTTSADYIGPIVEH--QYLQWDNWPRLGEILRSEKPLAFQQE 143

Query: 103 SYLCMKDALLEGFINTLNRY-YLKNALLEGSVPHTKAQSGMD----------AFAAAAKD 151
           S         + F + + R       ++       +A++ +D                  
Sbjct: 144 SRFAHDTRARDAFNDAMVRLSQPMVDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQ 203

Query: 152 ARMNNL--------FNQSMHNHTV---VEHVSGHMFIEVPNGQ----ALFMKWILSDWDD 196
                           +++H H +   VE    ++             + +   L  +D 
Sbjct: 204 LTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDA 263

Query: 197 EECLKILKNC 206
            E  +++ + 
Sbjct: 264 REAREVIGHA 273

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 18/178 (10%), Positives = 45/178 (25%), Gaps = 53/178 (29%)

Query: 2   VLPMTMKTAIQLGVLEIMLPKNNKET-----------PIILDRMLRLLASYSFLTCNLAT 50
           V+    +  ++ G+ +++  K    T                 +L    +   +      
Sbjct: 27  VVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILL---- 82

Query: 51  NIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDA 110
             ++      Y LA    +   +     +A   +     VN                   
Sbjct: 83  --EED----RYVLAKAGWFLLND----KMARVNMEFNHDVNYQGLF-------------- 118

Query: 111 LLEGFINTLNRYYLKNALLEGSVPHTKAQ-SGMDAFAAAAKD-ARMNNLFNQSMHNHT 166
                       +L+ ALL G     K        +   ++   ++   +    H ++
Sbjct: 119 ------------HLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYS 164

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 168 VEHVSGHMF---IEVPNGQ-ALFMKWILSDWDDEECLKILKNC 206
           +     ++    +  P G  A++M   L  + +EE + IL   
Sbjct: 231 IHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRV 273

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 36/239 (15%), Positives = 66/239 (27%), Gaps = 78/239 (32%)

Query: 15  VLEIMLPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNE 74
           +   +L K  +     ++ +LR   +Y FL   + T  +  S      +    R +    
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY---N 121

Query: 75  DGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNRYYLKNALLEGSVP 134
           D    A         V+            YL ++ ALLE          L+ A  +  + 
Sbjct: 122 DNQVFAK------YNVS--------RLQPYLKLRQALLE----------LRPA--KNVLI 155

Query: 135 HTKAQSGMDAF------AAAAKDAR--------------------------MNNLFNQSM 162
                 G+                +                          +  L  Q  
Sbjct: 156 D-----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 163 HNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCC---------VQCNT 212
            N T     S ++ + + + QA  ++ +L     E CL +L N           + C  
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.97
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.97
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.97
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.96
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.96
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.96
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.95
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.95
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.95
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.93
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.93
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.93
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.93
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.93
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.26
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	97.79
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	97.79
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	97.75
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	97.68
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.67
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	97.66
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	97.4
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	97.38
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	97.34
2p7i_A	250	Hypothetical protein; putative methyltransferase,	97.31
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	97.3
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.29
3lcc_A	235	Putative methyl chloride transferase; halide methy	97.26
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	97.23
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	97.23
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	97.19
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	97.17
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	97.15
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	97.09
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	96.98
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	96.94
3i9f_A	170	Putative type 11 methyltransferase; structural gen	96.92
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	96.89
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	96.85
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	96.85
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.85
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	96.84
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	96.82
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	96.75
1xxl_A	239	YCGJ protein; structural genomics, protein structu	96.72
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.71
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.7
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.63
3ocj_A	305	Putative exported protein; structural genomics, PS	96.59
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	96.59
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	96.56
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.46
3ege_A	261	Putative methyltransferase from antibiotic biosyn	96.45
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	96.45
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	96.44
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	96.43
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.4
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	96.39
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	96.38
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.32
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	96.29
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	96.25
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.24
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	96.24
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	96.23
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	96.23
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	96.2
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.12
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.11
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.11
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	96.08
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	96.0
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	95.95
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	95.92
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	95.9
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	95.85
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.81
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	95.71
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	95.7
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	95.6
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	95.53
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	95.36
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	95.35
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	95.24
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	95.24
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.01
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	94.94
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	94.91
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	94.9
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	94.82
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	94.8
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	94.78
3cc8_A	230	Putative methyltransferase; structural genomics, j	94.48
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	94.36
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	94.36
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	94.34
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	94.29
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	94.08
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.06
2b3t_A	276	Protein methyltransferase HEMK; translation termin	94.04
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	94.01
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	93.93
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	93.77
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	93.75
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	93.73
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	93.66
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	93.65
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	93.6
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	92.91
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	92.74
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	92.73
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	92.63
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	92.54
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	92.45
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	92.19
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	92.19
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	91.94
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	91.64
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	91.15
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	91.12
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	91.09
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	91.01
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	90.89
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	90.48
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	90.14
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	89.89
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	89.87
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	89.82
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	89.61
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	89.58
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	89.57
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	89.56
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	89.41
2i7c_A	283	Spermidine synthase; transferase, structural genom	89.31
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	89.12
1y0u_A	96	Arsenical resistance operon repressor, putative; s	89.1
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	89.09
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	88.9
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	88.85
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	88.82
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	88.67
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	88.46
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	88.4
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	88.28
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	88.26
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	88.2
2xrn_A	241	HTH-type transcriptional regulator TTGV; DNA-bindi	88.13
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	87.9
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	87.81
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	87.8
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	87.79
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	87.74
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	87.71
1tbx_A	99	ORF F-93, hypothetical 11.0 kDa protein; sulfolobu	87.64
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	87.57
2pt6_A	321	Spermidine synthase; transferase, structural genom	87.57
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	87.56
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	87.55
1ws6_A	171	Methyltransferase; structural genomics, riken stru	87.45
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	87.44
1ub9_A	100	Hypothetical protein PH1061; helix-turn-helix moti	87.24
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	87.17
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	86.75
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	86.75
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	86.56
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	86.55
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	86.33
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	86.24
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	86.13
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	86.13
2g7u_A	257	Transcriptional regulator; ICLR family, structural	86.11
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	85.99
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	85.59
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	85.56
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	85.53
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	85.53
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	85.44
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	85.44
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	85.39
2o07_A	304	Spermidine synthase; structural genomics, structur	85.35
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	85.33
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	85.0
2vn2_A	128	DNAD, chromosome replication initiation protein; D	84.97
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	84.93
2ia2_A	265	Putative transcriptional regulator; SAD, PSI-2, st	84.92
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	84.48
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	84.32
3df8_A	111	Possible HXLR family transcriptional factor; APC89	84.13
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	84.1
4a5n_A	131	Uncharacterized HTH-type transcriptional regulato;	83.87
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	83.87
2v79_A	135	DNA replication protein DNAD; primosome, DNA-bindi	83.42
1mkm_A	249	ICLR transcriptional regulator; structural genomic	83.32
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	83.17
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	82.97
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	82.93
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	82.52
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	82.45
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	82.43
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	82.35
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	82.34
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	82.31
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	82.26
3lpm_A	259	Putative methyltransferase; structural genomics, p	82.25
3jth_A	98	Transcription activator HLYU; transcription factor	82.25
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	82.12
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	81.93
2frn_A	278	Hypothetical protein PH0793; structural genomics,	81.04
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	80.82
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	80.76
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	80.53
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	80.18

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=1.5e-35  Score=254.39  Aligned_cols=205  Identities=13%  Similarity=0.244  Sum_probs=158.8

Q ss_pred             hhhHHHHHHHHhCchhHH-----------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599            2 VLPMTMKTAIQLGVLEIM-----------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L-----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      +.+++|++|++|||||+|           ||+++|++++.++|+||+|++.|+|++..+.      .+++|++|++|+.+
T Consensus        20 ~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~------~~~~y~~t~~s~~~   93 (353)
T 4a6d_A           20 MVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRG------GKAFYRNTELSSDY   93 (353)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET------TEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccC------ccceeeCCHHHHHH
Confidence            678999999999999999           8899999999999999999999999875321      15789999999864


Q ss_pred             -CCCCCCCchhhHHhhhhch-----------------hhhhhhc-ccCCcchhhhcchhhHhhHHhhhhhcc--HHHHHh
Q 042599           71 -FPNEDGVSLAPTLLIIQDK-----------------VNMDSWA-CKYTQHSYLCMKDALLEGFINTLNRYY--LKNALL  129 (214)
Q Consensus        71 -~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~-~~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~~  129 (214)
                       ..+++ .++++++.+....                 .+...++ +..++|+++.++|+..+.|+.+|....  ....+.
T Consensus        94 l~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~  172 (353)
T 4a6d_A           94 LTTVSP-TSQCSMLKYMGRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVL  172 (353)
T ss_dssp             HSTTST-TCCHHHHHHHHHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             hhcCCc-hHHHHHHHHhCHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             55554 5666665542211                 1122222 234689999999999999999996521  112222


Q ss_pred             -----cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc-----CCCceEEecCCCCcc-cCccceeeeeh
Q 042599          130 -----EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH-----NHTVVEHVSGHMFIE-VPNGQALFMKW  189 (214)
Q Consensus       130 -----~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~-----~~~rv~~~~gDff~~-~P~~d~y~l~~  189 (214)
                           .+...++||||  |..+.++++++|++       +.+++.+..     ..+||++++||||++ .|.+|+|++++
T Consensus       173 ~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~  252 (353)
T 4a6d_A          173 TAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILAR  252 (353)
T ss_dssp             HSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEES
T ss_pred             HhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeee
Confidence                 23356899998  77788999999976       566665542     257999999999965 45689999999


Q ss_pred             hccCCChHHHHHHHHHhHHhcCCC
Q 042599          190 ILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |||||+|++|++||++|+++|+||
T Consensus       253 vlh~~~d~~~~~iL~~~~~al~pg  276 (353)
T 4a6d_A          253 VLHDWADGKCSHLLERIYHTCKPG  276 (353)
T ss_dssp             SGGGSCHHHHHHHHHHHHHHCCTT
T ss_pred             ecccCCHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999998

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=2.7e-33  Score=241.19  Aligned_cols=211  Identities=39%  Similarity=0.643  Sum_probs=166.1

Q ss_pred             ChhhHHHHHHHHhCchhHH------------cCCCCCC--Chh---hHHHHHHHHhcCcceeeecccccCCCccccceec
Q 042599            1 AVLPMTMKTAIQLGVLEIM------------LPKNNKE--TPI---ILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGL   63 (214)
Q Consensus         1 ~~~~~~L~~a~~lgifd~L------------LA~~~~~--~~~---~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~   63 (214)
                      ++.+++|++|++|||||+|            ||+++|+  +++   .|+|+||+|++.|+|+++..++ ++|..+++|++
T Consensus        31 ~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~-~~g~~~~~y~~  109 (364)
T 3p9c_A           31 SVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEG-KDGRLSRSYGA  109 (364)
T ss_dssp             THHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEEC-SSSCEEEEEEE
T ss_pred             HHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEecccc-CCCCcCCEEec
Confidence            3678999999999999999            8889998  888   9999999999999999863111 11111478999


Q ss_pred             chhccccCCCCCCCchhhHHhhhhchhhhhhhcc----------------cCCcchhhhcchhhHhhHHhhhhhcc---H
Q 042599           64 ASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWAC----------------KYTQHSYLCMKDALLEGFINTLNRYY---L  124 (214)
Q Consensus        64 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~p~~~~~f~~~m~~~~---~  124 (214)
                      |+.|+.|+.+..+.++++++.+..++.++.+|..                +.++|+|+.++|+..+.|+.+|..+.   .
T Consensus       110 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~  189 (364)
T 3p9c_A          110 APVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIIT  189 (364)
T ss_dssp             CGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHH
Confidence            9999999877644678887765544444444421                35789999999999999999996521   1


Q ss_pred             HHHHh-----cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCcccCccceeeeehh
Q 042599          125 KNALL-----EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWI  190 (214)
Q Consensus       125 ~~~~~-----~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l~~I  190 (214)
                      ...+.     .+...++||||  |..+..+++++|++       +.+++.+.. .++|+++.||||+++|++|+|++++|
T Consensus       190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~D~~~~~p~~D~v~~~~v  268 (364)
T 3p9c_A          190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ-FPGVTHVGGDMFKEVPSGDTILMKWI  268 (364)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-CTTEEEEECCTTTCCCCCSEEEEESC
T ss_pred             HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh-cCCeEEEeCCcCCCCCCCCEEEehHH
Confidence            11121     23456899998  67777899999975       556655544 47999999999999998899999999


Q ss_pred             ccCCChHHHHHHHHHhHHhcCCC
Q 042599          191 LSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ||+|+|++|++||++++++|+||
T Consensus       269 lh~~~d~~~~~~L~~~~~~L~pg  291 (364)
T 3p9c_A          269 LHDWSDQHCATLLKNCYDALPAH  291 (364)
T ss_dssp             GGGSCHHHHHHHHHHHHHHSCTT
T ss_pred             hccCCHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999997

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.97  E-value=4.3e-31  Score=227.69  Aligned_cols=211  Identities=40%  Similarity=0.640  Sum_probs=162.6

Q ss_pred             ChhhHHHHHHHHhCchhHH--------------cCCCCC-CChh---hHHHHHHHHhcCcceeeecccccCCCcccccee
Q 042599            1 AVLPMTMKTAIQLGVLEIM--------------LPKNNK-ETPI---ILDRMLRLLASYSFLTCNLATNIKDGSAQRLYG   62 (214)
Q Consensus         1 ~~~~~~L~~a~~lgifd~L--------------LA~~~~-~~~~---~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~   62 (214)
                      .+.+++|++|++|||||+|              ||+++| .++.   .|+|+||+|++.|+|+++..+. ++|..+++|+
T Consensus        32 ~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~-~~g~~~~~y~  110 (368)
T 3reo_A           32 AVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLREL-PSGKVERLYG  110 (368)
T ss_dssp             THHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEEC-TTSCEEEEEE
T ss_pred             HHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccC-CCCcccceeC
Confidence            3678999999999999986              677887 4665   9999999999999999862100 1111137899


Q ss_pred             cchhccccCCCCCCCchhhHHhhhhchhhhhhhcc----------------cCCcchhhhcchhhHhhHHhhhhhcc--H
Q 042599           63 LASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWAC----------------KYTQHSYLCMKDALLEGFINTLNRYY--L  124 (214)
Q Consensus        63 ~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~p~~~~~f~~~m~~~~--~  124 (214)
                      +|+.|+.|+.+..+.++++++.+..++.++.+|..                +.++|+|+..+|+..+.|+.+|..+.  .
T Consensus       111 ~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~  190 (368)
T 3reo_A          111 LAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTIT  190 (368)
T ss_dssp             ECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhH
Confidence            99999998876544678887765544444444421                35789999999999999999996521  1


Q ss_pred             HH-HHh-----cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCcccCccceeeeeh
Q 042599          125 KN-ALL-----EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKW  189 (214)
Q Consensus       125 ~~-~~~-----~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l~~  189 (214)
                      .. .+.     .+...++||||  |..+..+++++|++       +.+++.+.. .++|+++.||||+++|++|+|++++
T Consensus       191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~p~~D~v~~~~  269 (368)
T 3reo_A          191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA-FSGVEHLGGDMFDGVPKGDAIFIKW  269 (368)
T ss_dssp             HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-CTTEEEEECCTTTCCCCCSEEEEES
T ss_pred             HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhh-cCCCEEEecCCCCCCCCCCEEEEec
Confidence            12 221     12356899998  67777899999975       455555443 4789999999999999889999999


Q ss_pred             hccCCChHHHHHHHHHhHHhcCCC
Q 042599          190 ILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |||+|+|++|++||++++++|+||
T Consensus       270 vlh~~~~~~~~~~l~~~~~~L~pg  293 (368)
T 3reo_A          270 ICHDWSDEHCLKLLKNCYAALPDH  293 (368)
T ss_dssp             CGGGBCHHHHHHHHHHHHHHSCTT
T ss_pred             hhhcCCHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999997

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.97  E-value=3e-30  Score=220.62  Aligned_cols=201  Identities=16%  Similarity=0.209  Sum_probs=159.6

Q ss_pred             hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599            2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP   72 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~   72 (214)
                      +.+++|+++++|||||+|         ||+++|++++.|+|+||+|++.|+|++.          +++|++|+.|+.|.+
T Consensus        34 ~~~~~l~~a~~lglf~~l~~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~~----------~~~y~~t~~s~~l~~  103 (348)
T 3lst_A           34 TYAAALRAAAAVGVADHLVDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRES----------DGRFALTDKGAALRS  103 (348)
T ss_dssp             HHHHHHHHHHHHTGGGGGTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECTTTGGGST
T ss_pred             HHHHHHHHHHHcCchhHhhCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEec----------CCEEecCHHHHHHhc
Confidence            568999999999999999         9999999999999999999999999984          789999999999987


Q ss_pred             CCCCCchhhHHhhhhchhhhhhhc-------c---------cCCcchhhhcchhhHhhHHhhhhhcc---HHHHHh----
Q 042599           73 NEDGVSLAPTLLIIQDKVNMDSWA-------C---------KYTQHSYLCMKDALLEGFINTLNRYY---LKNALL----  129 (214)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~-------~---------~~~~~~~~~~~p~~~~~f~~~m~~~~---~~~~~~----  129 (214)
                      +++ .++++++.+..++.++.+|.       +         +.++|+|+.++|+..+.|+.+|....   ....+.    
T Consensus       104 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~  182 (348)
T 3lst_A          104 DSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGDF  182 (348)
T ss_dssp             TSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSCC
T ss_pred             CCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCCc
Confidence            765 56777665433332333331       1         34689999999999999999996521   112222    


Q ss_pred             cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhc----cCCCceEEecCCCCcccCccceeeeehhccCCCh
Q 042599          130 EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSM----HNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDD  196 (214)
Q Consensus       130 ~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~----~~~~rv~~~~gDff~~~P~~d~y~l~~ILHdw~d  196 (214)
                      .+...++||||  |..+..+++++|+.       +.++....    ...+||+++.+|+|+++|..|+|++++|||+|+|
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d  262 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGD  262 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCH
Confidence            23356899997  66777889999975       44444221    1246899999999999996699999999999999


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      ++|.++|++++++|+||
T Consensus       263 ~~~~~~L~~~~~~Lkpg  279 (348)
T 3lst_A          263 EDSVRILTNCRRVMPAH  279 (348)
T ss_dssp             HHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999999997

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.97  E-value=6.1e-30  Score=217.17  Aligned_cols=203  Identities=17%  Similarity=0.206  Sum_probs=159.4

Q ss_pred             ChhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599            1 AVLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF   71 (214)
Q Consensus         1 ~~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~   71 (214)
                      ++.+++|++|++|||||+|         ||+++|++++.++|+||+|++.|+|+++     +    +++|++|++|+.|.
T Consensus        16 ~~~~~~l~~a~~lglf~~l~~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~-----~----~~~y~~t~~s~~l~   86 (332)
T 3i53_A           16 LATPMAVRVAATLRVADHIAAGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRD-----G----QGVYGLTEFGEQLR   86 (332)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-----T----TSBEEECTTGGGGS
T ss_pred             hHHHHHHHHHHHcChHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEec-----C----CCeEEcCHhHHHHh
Confidence            3678999999999999999         9999999999999999999999999986     2    68999999999997


Q ss_pred             CCCCCCchhhHHhhhhchhhh-hhhc-------c---------cCCcchhhhcchhhHhhHHhhhhhcc--HHHHHhc--
Q 042599           72 PNEDGVSLAPTLLIIQDKVNM-DSWA-------C---------KYTQHSYLCMKDALLEGFINTLNRYY--LKNALLE--  130 (214)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~-~~~~-------~---------~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~~~--  130 (214)
                      .+++ .++++++.+..++..+ ..|.       +         +.++|+|+.++|+..+.|+.+|....  ....+..  
T Consensus        87 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~  165 (332)
T 3i53_A           87 DDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKY  165 (332)
T ss_dssp             TTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSS
T ss_pred             cCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhC
Confidence            7665 4666665543222111 2221       1         34579999999999999999996521  1111111  


Q ss_pred             ---CCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcccC-ccceeeeehhc
Q 042599          131 ---GSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIEVP-NGQALFMKWIL  191 (214)
Q Consensus       131 ---g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~~P-~~d~y~l~~IL  191 (214)
                         +...++|+||  |..+..+++++|+.       +.+++.+..      ..+||+++.+|+++++| ..|+|++++||
T Consensus       166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vl  245 (332)
T 3i53_A          166 DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVL  245 (332)
T ss_dssp             CCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCG
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhh
Confidence               2346899998  66677888999864       455555542      24789999999999999 56999999999


Q ss_pred             cCCChHHHHHHHHHhHHhcCCC
Q 042599          192 SDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       192 Hdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |+|+|+++.+||++++++|+||
T Consensus       246 h~~~~~~~~~~l~~~~~~L~pg  267 (332)
T 3i53_A          246 HDWDDLSAVAILRRCAEAAGSG  267 (332)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTT
T ss_pred             ccCCHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999997

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.96  E-value=7.1e-30  Score=220.08  Aligned_cols=202  Identities=17%  Similarity=0.264  Sum_probs=160.9

Q ss_pred             hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccc-eecchhccccC
Q 042599            2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRL-YGLASVSRYFF   71 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~-y~~t~~s~~l~   71 (214)
                      +.+++|+++++|||||+|         ||+++|++++.|+|+||+|++.|+|+++     +    +++ |++|++|+.|.
T Consensus        50 ~~~~~l~~a~~lglf~~l~~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~-----~----~~~~y~~t~~s~~L~  120 (369)
T 3gwz_A           50 WKARAIHVAVELGVPELLQEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDL-----G----HDDLFAQNALSAVLL  120 (369)
T ss_dssp             HHHHHHHHHHHHTTGGGGTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEC-----S----STTEEECCHHHHTTS
T ss_pred             HHHHHHHHHHHCChhhhhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEe-----C----CCceEecCHHHHHHh
Confidence            568999999999999999         9999999999999999999999999996     2    678 99999999987


Q ss_pred             CCCCCCchhhHHhhhhchhhhhhhc-------c---------cCCcchhhhcchhhHhhHHhhhhhcc--HHHHHh----
Q 042599           72 PNEDGVSLAPTLLIIQDKVNMDSWA-------C---------KYTQHSYLCMKDALLEGFINTLNRYY--LKNALL----  129 (214)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~---------~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~~----  129 (214)
                      ++++ .++++++.+..++..+..|.       +         +.++|+|+.++|+..+.|+.+|....  ....+.    
T Consensus       121 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~  199 (369)
T 3gwz_A          121 PDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD  199 (369)
T ss_dssp             CCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC
Confidence            7665 56776666544432223331       1         34689999999999999999996521  112221    


Q ss_pred             -cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehhcc
Q 042599          130 -EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWILS  192 (214)
Q Consensus       130 -~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~ILH  192 (214)
                       .+...++|+||  |..+..+++++|++       +.+++.+..      ..++|+++.+||++++|. .|+|++++|||
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh  279 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLH  279 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGG
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhc
Confidence             13356999998  66777889999964       455555442      247899999999999994 69999999999


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|+|++|++||++++++|+||
T Consensus       280 ~~~d~~~~~~L~~~~~~L~pg  300 (369)
T 3gwz_A          280 DWDDDDVVRILRRIATAMKPD  300 (369)
T ss_dssp             GSCHHHHHHHHHHHHTTCCTT
T ss_pred             cCCHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999997

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.96  E-value=7e-29  Score=213.41  Aligned_cols=199  Identities=11%  Similarity=0.128  Sum_probs=153.8

Q ss_pred             hhhHHHHHHHHhCchhHH-----------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599            2 VLPMTMKTAIQLGVLEIM-----------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L-----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      +.+++|+++++|||||+|           ||+++|++++.|+|+||+|++.|+|+++          +++|++|+.|+.|
T Consensus        27 ~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~----------~~~y~~t~~s~~L   96 (363)
T 3dp7_A           27 VVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE----------EDRYVLAKAGWFL   96 (363)
T ss_dssp             HHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE----------TTEEEECHHHHHH
T ss_pred             HHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec----------CCEEecccchHHh
Confidence            468899999999999999           8889999999999999999999999885          6899999999988


Q ss_pred             CCCCCCCchhhHHhh-----------------hhchhhhhhhcccCCcchhhhcchhhHhh----HHhhhhhccHHHHH-
Q 042599           71 FPNEDGVSLAPTLLI-----------------IQDKVNMDSWACKYTQHSYLCMKDALLEG----FINTLNRYYLKNAL-  128 (214)
Q Consensus        71 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----f~~~m~~~~~~~~~-  128 (214)
                      +++++. +.  .+.+                 ...+.+...+++..++|+++.++|+..++    |+.+|........+ 
T Consensus        97 ~~~~~~-~~--~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~  173 (363)
T 3dp7_A           97 LNDKMA-RV--NMEFNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALE  173 (363)
T ss_dssp             HHCHHH-HH--HHHHHHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             hCCCcc-cc--hheeecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            876541 11  1110                 11223334444457899999999988773    77777542222222 


Q ss_pred             --h-cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcc---cCc-cceee
Q 042599          129 --L-EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIE---VPN-GQALF  186 (214)
Q Consensus       129 --~-~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~---~P~-~d~y~  186 (214)
                        . .+...++||||  |..+..+++++|++       +.+++.+..      ..+||+++.+||+++   +|+ .|+|+
T Consensus       174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~  253 (363)
T 3dp7_A          174 IVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVW  253 (363)
T ss_dssp             HHGGGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEE
T ss_pred             HhcccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEE
Confidence              2 35567999998  66777889999964       555655443      136899999999974   674 59999


Q ss_pred             eehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          187 MKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       187 l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +++|||+|+|+++.+||++++++|+||
T Consensus       254 ~~~vlh~~~~~~~~~~l~~~~~~L~pg  280 (363)
T 3dp7_A          254 MSQFLDCFSEEEVISILTRVAQSIGKD  280 (363)
T ss_dssp             EESCSTTSCHHHHHHHHHHHHHHCCTT
T ss_pred             EechhhhCCHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999997

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.96  E-value=2.7e-28  Score=209.21  Aligned_cols=209  Identities=22%  Similarity=0.360  Sum_probs=160.0

Q ss_pred             hhhHHHHHHHHhCchhHH-----------cCCCCCC---ChhhHHHHHHHHhcCcceeeeccc-ccCCCccccceecchh
Q 042599            2 VLPMTMKTAIQLGVLEIM-----------LPKNNKE---TPIILDRMLRLLASYSFLTCNLAT-NIKDGSAQRLYGLASV   66 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L-----------LA~~~~~---~~~~l~rlLr~L~~~gl~~~~~~~-~~~~g~~~~~y~~t~~   66 (214)
                      +.+++|+++++||||++|           ||+++|+   +++.|+|+||+|++.|+|++..+. ...+|..++.|++|+.
T Consensus        22 ~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~  101 (358)
T 1zg3_A           22 VSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPP  101 (358)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHH
T ss_pred             HHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHH
Confidence            468999999999999999           8889999   688999999999999999986100 0001101479999999


Q ss_pred             ccccCCCCCCCchhhHHhhhhchhhhhhhc-------c-----------cCCcchhhhcchhhHh--hHHhhhhhc----
Q 042599           67 SRYFFPNEDGVSLAPTLLIIQDKVNMDSWA-------C-----------KYTQHSYLCMKDALLE--GFINTLNRY----  122 (214)
Q Consensus        67 s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----------~~~~~~~~~~~p~~~~--~f~~~m~~~----  122 (214)
                      |+.|+++++ .++++++.+..++.++.+|.       +           +.++|+|+..+|+..+  .|+.+|...    
T Consensus       102 s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~  180 (358)
T 1zg3_A          102 SKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF  180 (358)
T ss_dssp             HHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHH
Confidence            998887766 57777766544433333332       1           3457999999999999  999999651    


Q ss_pred             -cHHHHH---hcCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCcccCccceeeeeh
Q 042599          123 -YLKNAL---LEGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKW  189 (214)
Q Consensus       123 -~~~~~~---~~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l~~  189 (214)
                       .+.+.+   ..+...++||||  |..+..+++++|++       +.+++.+.. .++|+++.+|||+++|+.|+|++++
T Consensus       181 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~~~~D~v~~~~  259 (358)
T 1zg3_A          181 KLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-NENLNFVGGDMFKSIPSADAVLLKW  259 (358)
T ss_dssp             HHHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC-CSSEEEEECCTTTCCCCCSEEEEES
T ss_pred             HHHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc-CCCcEEEeCccCCCCCCceEEEEcc
Confidence             122222   124467999998  66777899999964       445544443 3569999999999888889999999


Q ss_pred             hccCCChHHHHHHHHHhHHhcCC
Q 042599          190 ILSDWDDEECLKILKNCCVQCNT  212 (214)
Q Consensus       190 ILHdw~d~~~~~IL~~~~~Al~p  212 (214)
                      |||+|+|++|++||++++++|+|
T Consensus       260 vlh~~~d~~~~~~l~~~~~~L~p  282 (358)
T 1zg3_A          260 VLHDWNDEQSLKILKNSKEAISH  282 (358)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTGG
T ss_pred             cccCCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999998

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.95  E-value=5.8e-28  Score=204.92  Aligned_cols=198  Identities=18%  Similarity=0.277  Sum_probs=155.5

Q ss_pred             hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599            2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP   72 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~   72 (214)
                      +.+++|+++++||||+.|         ||+++|++++.|+|+||+|++.|+|++.     +    ++.|++|++|+.|. 
T Consensus        20 ~~~~~l~~~~~lgi~~~l~~~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~-----~----~~~y~~t~~s~~l~-   89 (334)
T 2ip2_A           20 WKSRCVYVATRLGLADLIESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGD-----T----RDGYANTPTSHLLR-   89 (334)
T ss_dssp             HHHHHHHHHHHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-----T----TTEEEECHHHHTTS-
T ss_pred             HHHHHHHHHHHcCcHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEec-----C----CCeEecCHHHHHHh-
Confidence            468999999999999999         8999999999999999999999999986     2    58999999999888 


Q ss_pred             CCCCCchhhHHhhhhchhhhhhhc----------------ccCCcchhhhcchhhHhhHHhhhhhcc--HHHHH-h----
Q 042599           73 NEDGVSLAPTLLIIQDKVNMDSWA----------------CKYTQHSYLCMKDALLEGFINTLNRYY--LKNAL-L----  129 (214)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~-~----  129 (214)
                      +++ .++++++.+..++.+ ..|.                .+.++|+|+.++|+..+.|+.+| ...  ....+ .    
T Consensus        90 ~~~-~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~~  166 (334)
T 2ip2_A           90 DVE-GSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLDF  166 (334)
T ss_dssp             SST-TCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSCC
T ss_pred             CCC-ccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCCC
Confidence            655 466666654333221 2221                03467999999999999999999 521  11222 1    


Q ss_pred             cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccC------CCceEEecCCCCcccCc-cceeeeehhccC
Q 042599          130 EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHN------HTVVEHVSGHMFIEVPN-GQALFMKWILSD  193 (214)
Q Consensus       130 ~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~------~~rv~~~~gDff~~~P~-~d~y~l~~ILHd  193 (214)
                      .+ ..++|+||  |..+..+++++|+.       +.+++.+...      .++|+++.+|+++++|+ .|+|+++++||+
T Consensus       167 ~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~  245 (334)
T 2ip2_A          167 RG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGD  245 (334)
T ss_dssp             TT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGG
T ss_pred             CC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccC
Confidence            23 67899997  66677888888864       2333333221      36899999999998886 599999999999


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      |+|+++.++|++++++|+||
T Consensus       246 ~~~~~~~~~l~~~~~~L~pg  265 (334)
T 2ip2_A          246 LDEAASLRLLGNCREAMAGD  265 (334)
T ss_dssp             CCHHHHHHHHHHHHHHSCTT
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999997

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.95  E-value=7.8e-28  Score=205.90  Aligned_cols=202  Identities=21%  Similarity=0.343  Sum_probs=158.9

Q ss_pred             hhhHHHHHHHHhCchhHH-----------cCCCCCC---ChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhc
Q 042599            2 VLPMTMKTAIQLGVLEIM-----------LPKNNKE---TPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVS   67 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L-----------LA~~~~~---~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s   67 (214)
                      +.+++|+++++||||++|           ||+++|+   +++.|+|+||+|++.|+|++.+     +  .++.|++|+.|
T Consensus        28 ~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~-----~--~~~~y~~t~~s  100 (352)
T 1fp2_A           28 IDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIIT-----K--EEESYALTVAS  100 (352)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEE-----S--SSEEEEECHHH
T ss_pred             HHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEec-----C--CCCeEeCCHHH
Confidence            468999999999999999           8889999   5889999999999999999861     0  05899999999


Q ss_pred             cccCCCCCCCchhhHHhhhhchhhhhhhc--------c---------cCCcchhhhcchhhHhhHHhhhhhcc--H-H--
Q 042599           68 RYFFPNEDGVSLAPTLLIIQDKVNMDSWA--------C---------KYTQHSYLCMKDALLEGFINTLNRYY--L-K--  125 (214)
Q Consensus        68 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~p~~~~~f~~~m~~~~--~-~--  125 (214)
                      +.|+++++ .++++++.+..++.++.+|.        +         +.++|+|+.++|+..+.|+.+|....  . .  
T Consensus       101 ~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~  179 (352)
T 1fp2_A          101 ELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLAL  179 (352)
T ss_dssp             HTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhHH
Confidence            99987766 56777765543333333331        1         34689999999999999999996521  1 1  


Q ss_pred             HHH---hcCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCcccCccceeeeehhccC
Q 042599          126 NAL---LEGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSD  193 (214)
Q Consensus       126 ~~~---~~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l~~ILHd  193 (214)
                      +.+   ..+...++|+||  |..+..+++++|+.       +.+++.+.. .++|+++.+|+|+++|..|+|+++++||+
T Consensus       180 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~p~~D~v~~~~~lh~  258 (352)
T 1fp2_A          180 RDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG-SNNLTYVGGDMFTSIPNADAVLLKYILHN  258 (352)
T ss_dssp             HTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-BTTEEEEECCTTTCCCCCSEEEEESCGGG
T ss_pred             HhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc-CCCcEEEeccccCCCCCccEEEeehhhcc
Confidence            111   123467999997  66777889999864       455555444 35699999999998888899999999999


Q ss_pred             CChHHHHHHHHHhHHhcCC
Q 042599          194 WDDEECLKILKNCCVQCNT  212 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~p  212 (214)
                      |+|++|+++|++++++|+|
T Consensus       259 ~~d~~~~~~l~~~~~~L~p  277 (352)
T 1fp2_A          259 WTDKDCLRILKKCKEAVTN  277 (352)
T ss_dssp             SCHHHHHHHHHHHHHHHSG
T ss_pred             CCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.95  E-value=3.6e-27  Score=203.21  Aligned_cols=210  Identities=30%  Similarity=0.488  Sum_probs=154.7

Q ss_pred             hhhHHHHHHHHhCchhHH--------------cCCCCCC------ChhhHHHHHHHHhcCcceeeecccccCCCccccce
Q 042599            2 VLPMTMKTAIQLGVLEIM--------------LPKNNKE------TPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLY   61 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L--------------LA~~~~~------~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y   61 (214)
                      +.+++|++|++||||++|              ||+++|+      +++.|+|+||+|++.|+|++..+++ ++|..++.|
T Consensus        36 ~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~-~~g~~~~~y  114 (372)
T 1fp1_D           36 VYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTI-EDGGAERVY  114 (372)
T ss_dssp             HHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEEC-TTSCEEEEE
T ss_pred             HHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEeccccc-CCCCcCCeE
Confidence            578999999999999986              5677898      7889999999999999999861000 000003699


Q ss_pred             ecchhccccCCCCCCCchhhHHhhhhchhhhhhhc-------c----------cCCcchhhhcchhhHhhHHhhhhhcc-
Q 042599           62 GLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWA-------C----------KYTQHSYLCMKDALLEGFINTLNRYY-  123 (214)
Q Consensus        62 ~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----------~~~~~~~~~~~p~~~~~f~~~m~~~~-  123 (214)
                      ++|+.|+.|++++++.++++++.+..++.++.+|.       +          +.++|+|+..+|+..+.|+.+|.... 
T Consensus       115 ~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~  194 (372)
T 1fp1_D          115 GLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCA  194 (372)
T ss_dssp             EECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHH
T ss_pred             ecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhH
Confidence            99999999887765346777766544433333331       1          24678999999999999999996521 


Q ss_pred             -H-HHHHh-----cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCcccCccceeee
Q 042599          124 -L-KNALL-----EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFM  187 (214)
Q Consensus       124 -~-~~~~~-----~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l  187 (214)
                       . ...+.     .+...++|+||  |..+..+++++|++       +.+++.+.. .++|+++.+||++++|.+|+|++
T Consensus       195 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~~~~D~v~~  273 (372)
T 1fp1_D          195 TEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP-LSGIEHVGGDMFASVPQGDAMIL  273 (372)
T ss_dssp             HHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-CTTEEEEECCTTTCCCCEEEEEE
T ss_pred             HHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh-cCCCEEEeCCcccCCCCCCEEEE
Confidence             1 11121     12356899997  66777889999864       445554443 36799999999998888999999


Q ss_pred             ehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          188 KWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       188 ~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +++||+|+|++|+++|++++++|+||
T Consensus       274 ~~~lh~~~d~~~~~~l~~~~~~L~pg  299 (372)
T 1fp1_D          274 KAVCHNWSDEKCIEFLSNCHKALSPN  299 (372)
T ss_dssp             ESSGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             ecccccCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999986

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.93  E-value=1e-25  Score=193.18  Aligned_cols=200  Identities=14%  Similarity=0.143  Sum_probs=154.6

Q ss_pred             hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhc-cccC
Q 042599            2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVS-RYFF   71 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s-~~l~   71 (214)
                      +.+++|+++++||||+.|         ||+++|++++.|+|+||+|++.|+|+++          ++.|++|+.+ +.|.
T Consensus        43 ~~~~~l~~a~~lgif~~L~~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~----------~~~y~~t~~~~~~l~  112 (359)
T 1x19_A           43 IEFSCMKAAIELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE----------DGKWSLTEFADYMFS  112 (359)
T ss_dssp             HHHHHHHHHHHHTHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECHHHHHHSS
T ss_pred             HHHHHHHHHHHcCcHHHHcCCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEee----------CCeEecCHHHHHHhc
Confidence            468899999999999999         8999999999999999999999999996          5699999974 4566


Q ss_pred             CCCCC--CchhhHHhhhhchhhhhhhc-------ccCCcchhhhcchh---hHhhHHhhhhhcc---HHHHH-h----cC
Q 042599           72 PNEDG--VSLAPTLLIIQDKVNMDSWA-------CKYTQHSYLCMKDA---LLEGFINTLNRYY---LKNAL-L----EG  131 (214)
Q Consensus        72 ~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~---~~~~f~~~m~~~~---~~~~~-~----~g  131 (214)
                      .+++.  .++++++.+. ....+..|.       ++.+ |+++..+|+   ..+.|+.+|....   ..+.+ .    .+
T Consensus       113 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~-~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~~~~  190 (359)
T 1x19_A          113 PTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN-FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKLDG  190 (359)
T ss_dssp             SSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC-CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCCCTT
T ss_pred             CCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcCCCC
Confidence            55441  4677766653 223334442       3444 999999999   9999999986522   11222 1    23


Q ss_pred             CCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCc-ccCccceeeeehhccCCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFI-EVPNGQALFMKWILSDWD  195 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~-~~P~~d~y~l~~ILHdw~  195 (214)
                      ...++|+||  |..+..+++++|+.       +.+++.+..      ..+||+++.+|+++ ++|++|+|+++++||+|+
T Consensus       191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~  270 (359)
T 1x19_A          191 VKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSAN  270 (359)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSC
T ss_pred             CCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCC
Confidence            356899997  66677888888854       444544432      23579999999996 556679999999999999


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      |+++.++|++++++|+||
T Consensus       271 d~~~~~~l~~~~~~L~pg  288 (359)
T 1x19_A          271 EQLSTIMCKKAFDAMRSG  288 (359)
T ss_dssp             HHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            999999999999999997

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.93  E-value=1.2e-25  Score=190.30  Aligned_cols=201  Identities=12%  Similarity=0.178  Sum_probs=156.4

Q ss_pred             hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhc-cccC
Q 042599            2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVS-RYFF   71 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s-~~l~   71 (214)
                      +.+++|+++++||||+.|         ||+++|++++.|+|+||+|++.|+|++.          +++|++|++| +.|.
T Consensus        18 ~~~~~l~~~~~l~i~~~l~~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~----------~~~y~~t~~~~~~l~   87 (335)
T 2r3s_A           18 QRSAAIKAAVELNVFTAISQGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ----------AEGYRLTSDSAMFLD   87 (335)
T ss_dssp             HHHHHHHHHHHTTHHHHHTTSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECHHHHHHTC
T ss_pred             HHHHHHHHHHHcChHHHHhcCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec----------CCEEecCHHHHHHhc
Confidence            468999999999999999         9999999999999999999999999875          6899999999 6777


Q ss_pred             CCCCCCchhhHHhhhhchhhhhhhc-------ccCC-c--chhhhcchhhHhhHHhhhhhcc------HHHHHh---cCC
Q 042599           72 PNEDGVSLAPTLLIIQDKVNMDSWA-------CKYT-Q--HSYLCMKDALLEGFINTLNRYY------LKNALL---EGS  132 (214)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~--~~~~~~~p~~~~~f~~~m~~~~------~~~~~~---~g~  132 (214)
                      .+++ .++++++.+..++.....|.       ++.+ +  |+++.++|+..+.|...|....      +.+.+.   .+.
T Consensus        88 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (335)
T 2r3s_A           88 RQSK-FYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEP  166 (335)
T ss_dssp             TTST-TCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCSTTTGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHTC--CCC
T ss_pred             cCCc-HHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCCCcccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcccccCCC
Confidence            6665 56777776654434444442       2222 2  7888899999999999886521      112222   233


Q ss_pred             CceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCc-ccCc-cceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~  195 (214)
                      ..++|+|+  |..+..+++++|..       +.+++.+..      ..++|+++.+|+++ ++|+ .|+|+++++||+|+
T Consensus       167 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~  246 (335)
T 2r3s_A          167 LKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFD  246 (335)
T ss_dssp             SEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSC
T ss_pred             CEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccCC
Confidence            56899997  66677888888864       334444332      13589999999997 6665 59999999999999


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      ++++.++|++++++|+||
T Consensus       247 ~~~~~~~l~~~~~~L~pg  264 (335)
T 2r3s_A          247 VATCEQLLRKIKTALAVE  264 (335)
T ss_dssp             HHHHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            999999999999999986

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.93  E-value=1e-25  Score=192.32  Aligned_cols=199  Identities=10%  Similarity=0.108  Sum_probs=150.1

Q ss_pred             hhhHHHHHHHHhCchhHH--------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc-CC
Q 042599            2 VLPMTMKTAIQLGVLEIM--------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF-FP   72 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L--------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l-~~   72 (214)
                      +.+++|+++++||||++|        ||+++|++++.|+|+||+|++.|+|+++          +++|++|+.|+.+ .+
T Consensus        36 ~~~~~l~~a~~lgif~~l~~~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~----------~~~y~~t~~s~~~l~~  105 (352)
T 3mcz_A           36 RQSAILHYAVADKLFDLTQTGRTPAEVAASFGMVEGKAAILLHALAALGLLTKE----------GDAFRNTALTERYLTT  105 (352)
T ss_dssp             HHHHHHHHHHHTTHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECHHHHHHHST
T ss_pred             HHHHHHHHHHHCChHHHhCCCCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEec----------CCeeecCHHHHhhccC
Confidence            468899999999999999        9999999999999999999999999996          5789999999864 45


Q ss_pred             CCCCCchhhHHhhhhchhhhhhh-------cccCCc-c---hhhhcchhhHhhHHhhhhh--ccHHHHHh----cC-CCc
Q 042599           73 NEDGVSLAPTLLIIQDKVNMDSW-------ACKYTQ-H---SYLCMKDALLEGFINTLNR--YYLKNALL----EG-SVP  134 (214)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~---~~~~~~p~~~~~f~~~m~~--~~~~~~~~----~g-~~~  134 (214)
                      +++ .++++++.+.  ...+..|       .++.+. |   .++..+|+..+.|+.+|..  .++.+.+.    .+ ...
T Consensus       106 ~~~-~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~  182 (352)
T 3mcz_A          106 TSA-DYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELGVFARART  182 (352)
T ss_dssp             TCT-TCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCE
T ss_pred             CCh-hhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccccccccCHHHHHHHHHHHHhhhhhHHHHHHhCCCcCCCCE
Confidence            544 5677665532  1123333       222222 2   2346789999999999965  12212222    12 457


Q ss_pred             eEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcc---cCc-cceeeeehhccCCC
Q 042599          135 HTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIE---VPN-GQALFMKWILSDWD  195 (214)
Q Consensus       135 ~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~---~P~-~d~y~l~~ILHdw~  195 (214)
                      ++|+||  |..+..+++++|+.       +.+++.+..      ..+||+++.+|++++   .|+ .|+|+++++||+|+
T Consensus       183 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~  262 (352)
T 3mcz_A          183 VIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFD  262 (352)
T ss_dssp             EEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSC
T ss_pred             EEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCC
Confidence            999997  66677889999864       344443322      235899999999976   455 59999999999999


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      |+++.++|++++++|+||
T Consensus       263 ~~~~~~~l~~~~~~L~pg  280 (352)
T 3mcz_A          263 AREAREVIGHAAGLVKPG  280 (352)
T ss_dssp             HHHHHHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999999986

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.93  E-value=2.1e-25  Score=191.68  Aligned_cols=202  Identities=16%  Similarity=0.226  Sum_probs=157.3

Q ss_pred             hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCcccc--ceecchhcccc
Q 042599            2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQR--LYGLASVSRYF   70 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~--~y~~t~~s~~l   70 (214)
                      +.+++|++++++|||+.|         ||+++|++++.|.|+||+|++.|+|++.     +    ++  .|++|++|+.|
T Consensus        28 ~~~~~l~~~~~l~i~~~l~~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~-----~----~~~~~y~~t~~s~~l   98 (374)
T 1qzz_A           28 VTPMALRVAATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGG-----E----KQGRPLRPTRLGMLL   98 (374)
T ss_dssp             HHHHHHHHHHHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECC-----C----C-CCCCEECTTGGGG
T ss_pred             HHHHHHHHHHHcChHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEe-----C----CCCeEEEEChHHHhh
Confidence            567999999999999999         8999999999999999999999999985     1    55  99999999999


Q ss_pred             CCCCCCCchhhHHhhhhchhhh-hhhcc----------------cCCcchhhhcchhhHhhHHhhhhhcc---HHHHHh-
Q 042599           71 FPNEDGVSLAPTLLIIQDKVNM-DSWAC----------------KYTQHSYLCMKDALLEGFINTLNRYY---LKNALL-  129 (214)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------------~~~~~~~~~~~p~~~~~f~~~m~~~~---~~~~~~-  129 (214)
                      ..+++ .++++++.+..++..+ ..|..                +.++|+++..+|+..+.|+.+|....   ....+. 
T Consensus        99 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  177 (374)
T 1qzz_A           99 ADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADA  177 (374)
T ss_dssp             STTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHT
T ss_pred             cCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHh
Confidence            87765 5676666544332222 23311                35788999999999999999986421   112222 


Q ss_pred             ---cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehh
Q 042599          130 ---EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWI  190 (214)
Q Consensus       130 ---~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~I  190 (214)
                         .....++|+|+  |..+..+++++|+.       +.+++.+..      ..++|+++.+|+++++|. .|+|+++++
T Consensus       178 ~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~v  257 (374)
T 1qzz_A          178 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFV  257 (374)
T ss_dssp             SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESC
T ss_pred             CCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEecc
Confidence               12356899997  66677888888854       445554432      124899999999998886 599999999


Q ss_pred             ccCCChHHHHHHHHHhHHhcCCC
Q 042599          191 LSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ||+|+|+++.++|++++++|+||
T Consensus       258 l~~~~~~~~~~~l~~~~~~L~pg  280 (374)
T 1qzz_A          258 LLNWSDEDALTILRGCVRALEPG  280 (374)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999986

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.93  E-value=3.5e-25  Score=189.60  Aligned_cols=202  Identities=18%  Similarity=0.232  Sum_probs=156.6

Q ss_pred             hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599            2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP   72 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~   72 (214)
                      +.+++|++++++|||+.|         ||+++|+++..+.|+||+|++.|+|++.+         +++|++|+.|+.|..
T Consensus        31 ~~~~~l~~~~~l~i~~~l~~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~---------~g~y~~t~~s~~l~~  101 (360)
T 1tw3_A           31 HTPMVVRTAATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA---------PGEFVPTEVGELLAD  101 (360)
T ss_dssp             HHHHHHHHHHHTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE---------TTEEEECTTGGGGST
T ss_pred             HHHHHHHHHHHhCHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecC---------CCeEEeCHHHHHHhc
Confidence            567999999999999999         89999999999999999999999999862         689999999999987


Q ss_pred             CCCCCchhhHHhhhhchh-hhhhhc-------c---------cCCcchhhhcchhhHhhHHhhhhhcc--HHHH-Hh---
Q 042599           73 NEDGVSLAPTLLIIQDKV-NMDSWA-------C---------KYTQHSYLCMKDALLEGFINTLNRYY--LKNA-LL---  129 (214)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~-~~~~~~-------~---------~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~-~~---  129 (214)
                      +++ .++++++.+..++. .+..|.       +         +.++|+++..+|+..+.|..+|....  ..+. +.   
T Consensus       102 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~  180 (360)
T 1tw3_A          102 DHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD  180 (360)
T ss_dssp             TST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC
T ss_pred             CCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC
Confidence            765 56666655433221 222221       1         35688999999999999999986411  1111 11   


Q ss_pred             -cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehhcc
Q 042599          130 -EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWILS  192 (214)
Q Consensus       130 -~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~ILH  192 (214)
                       .....++|+|+  |..+..+++++|+.       +.+++.+..      ..++|+++.+|+++++|. .|+|+++++||
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~  260 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLL  260 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGG
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEccccc
Confidence             12356899997  66667888888864       334443332      134899999999998886 59999999999


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|+|+++.++|++++++|+||
T Consensus       261 ~~~~~~~~~~l~~~~~~L~pg  281 (360)
T 1tw3_A          261 NWPDHDAVRILTRCAEALEPG  281 (360)
T ss_dssp             GSCHHHHHHHHHHHHHTEEEE
T ss_pred             CCCHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999986

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.26  E-value=6.1e-07  Score=76.85  Aligned_cols=180  Identities=7%  Similarity=-0.058  Sum_probs=97.7

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCCCCCCCchhhHHhh--hhchhhhhhhcc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLI--IQDKVNMDSWAC   97 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~   97 (214)
                      ||.++|.+++.++++|+.|++.|+++..          ++ |++|+.+..++.........+....  ......+..|..
T Consensus        61 La~~~g~~~~~v~~~L~~l~~~gll~~~----------~~-~~lt~~~~~~l~~~~~~~~~~~~~~~~~g~g~~~~~~~~  129 (373)
T 2qm3_A           61 IVDLSEEPLPLVVAILESLNELGYVTFE----------DG-VKLTEKGEELVAEYGIGKRYDFTCPHCQGKTVDLQAFAD  129 (373)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHTTSEECS----------SS-SEECHHHHHHHHHHTCCCCCC------------CGGGHH
T ss_pred             HHHHhCCChHHHHHHHHHHhhCCcEEEC----------CC-EEECHHHHHHHHhcCccccccccchhhcCCCcchhhhHH
Confidence            7888999999999999999999999864          44 9999987654332110111111000  000000000000


Q ss_pred             -cCCcchhhhcchhhHhhHHh-hhhhccH-HHH---Hhc---CCCceEEccC-CccHHHHHHhCCC-------c-hHHHH
Q 042599           98 -KYTQHSYLCMKDALLEGFIN-TLNRYYL-KNA---LLE---GSVPHTKAQS-GMDAFAAAAKDAR-------M-NNLFN  159 (214)
Q Consensus        98 -~~~~~~~~~~~p~~~~~f~~-~m~~~~~-~~~---~~~---g~~~~~dvgG-G~~~~~~~~~~P~-------l-~~v~~  159 (214)
                       ...+.+.+...|.....|.. ++..... ...   ...   ....++|+|| |..+..++...|.       + +..++
T Consensus       130 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlGG~G~~~~~la~~~~~~~v~~vDi~~~~l~  209 (373)
T 2qm3_A          130 LLEQFREIVKDRPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLGDDDLTSIALMLSGLPKRIAVLDIDERLTK  209 (373)
T ss_dssp             HHHHHHHHHTTCCCCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEESCTTCHHHHHHHHTCCSEEEEECSCHHHHH
T ss_pred             HHHHHHHHHhcCCccchhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence             00000111111111111111 0000000 000   111   2356899997 6667777777772       2 34444


Q ss_pred             hhcc-----CCCceEEecCCCCcccCc-----cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          160 QSMH-----NHTVVEHVSGHMFIEVPN-----GQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       160 ~~~~-----~~~rv~~~~gDff~~~P~-----~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+..     ..++|+++.+|+++++|.     -|++++...+|.+.   ...+|+++.++|+||
T Consensus       210 ~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~Lkpg  270 (373)
T 2qm3_A          210 FIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEA---IRAFVGRGIATLKGP  270 (373)
T ss_dssp             HHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCST
T ss_pred             HHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchHH---HHHHHHHHHHHcccC
Confidence            4332     123899999999986662     39999987776552   589999999999995

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.00  E-value=9.3e-06  Score=66.60  Aligned_cols=83  Identities=8%  Similarity=0.071  Sum_probs=62.7

Q ss_pred             CCCceEEccCCc---cHH--HHHHhCCCc--------hHHHHhhcc---CCCceEEecCCCCcc------------cC--
Q 042599          131 GSVPHTKAQSGM---DAF--AAAAKDARM--------NNLFNQSMH---NHTVVEHVSGHMFIE------------VP--  180 (214)
Q Consensus       131 g~~~~~dvgGG~---~~~--~~~~~~P~l--------~~v~~~~~~---~~~rv~~~~gDff~~------------~P--  180 (214)
                      +...++|+|+|.   ..+  .+.+.+|+.        +.+++.+..   ..++++++.+|++++            +|  
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~  156 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS  156 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence            446799999876   433  344556753        345554432   246899999999863            33  


Q ss_pred             ccceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          181 NGQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       181 ~~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +.|++++..+||.++|++...+|++++++|+||
T Consensus       157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pG  189 (274)
T 2qe6_A          157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPG  189 (274)
T ss_dssp             SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTT
T ss_pred             CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCC
Confidence            249999999999999999999999999999997

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=97.79  E-value=6.4e-05  Score=61.16  Aligned_cols=83  Identities=12%  Similarity=0.159  Sum_probs=63.6

Q ss_pred             CCCceEEccC--CccHHHHHHhC--CCc--------hHHHHhhcc------CCCceEEecCCCCc-ccCccceeeeehhc
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKD--ARM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPNGQALFMKWIL  191 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~--P~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~~d~y~l~~IL  191 (214)
                      ....++|+|.  |..+..++++.  |..        +..++.+..      ...+|+++.+|+.+ +.++.|++++..+|
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l  149 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL  149 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeee
Confidence            4467999996  55566777764  332        344554432      24589999999986 45567999999999


Q ss_pred             cCCChHHHHHHHHHhHHhcCCC
Q 042599          192 SDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       192 Hdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |..++++-..+|+++++.|+||
T Consensus       150 ~~~~~~~~~~~l~~i~~~LkpG  171 (261)
T 4gek_A          150 QFLEPSERQALLDKIYQGLNPG  171 (261)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEE
T ss_pred             eecCchhHhHHHHHHHHHcCCC
Confidence            9999999999999999999997

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=97.79  E-value=4.1e-05  Score=60.43  Aligned_cols=81  Identities=7%  Similarity=0.053  Sum_probs=63.1

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---CCCceEEecCCCCc-ccCc-cceeeeehhccCCChH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---NHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWDDE  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d~  197 (214)
                      ..++|+|+  |..+..+++..|..        +..++.+..   ...+++++.+|+.+ +.+. -|++++..+||.+++.
T Consensus        46 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~  125 (234)
T 3dtn_A           46 PDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDE  125 (234)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGSCHH
T ss_pred             CeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccCCHH
Confidence            56899997  66667788887743        334444332   23489999999987 3443 4999999999999999


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +...+|+++++.|+||
T Consensus       126 ~~~~~l~~~~~~Lkpg  141 (234)
T 3dtn_A          126 DKKELYKRSYSILKES  141 (234)
T ss_dssp             HHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999999999986

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.75  E-value=4.7e-05  Score=58.71  Aligned_cols=82  Identities=15%  Similarity=0.042  Sum_probs=63.8

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc--cceeeeehhccCCChHHHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEECL  200 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~~~  200 (214)
                      ...++|+|.  |..+..+++...++      +..++.+....++++++.+|+.+ +.|.  -|++++..+||.+++++..
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~  121 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELP  121 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHH
Confidence            567999997  55555666664433      34555555546789999999986 4553  3999999999999999999


Q ss_pred             HHHHHhHHhcCCC
Q 042599          201 KILKNCCVQCNTG  213 (214)
Q Consensus       201 ~IL~~~~~Al~pg  213 (214)
                      ++|+++++.|+||
T Consensus       122 ~~l~~~~~~L~pg  134 (203)
T 3h2b_A          122 DALVALRMAVEDG  134 (203)
T ss_dssp             HHHHHHHHTEEEE
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999986

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.68  E-value=5e-05  Score=59.43  Aligned_cols=82  Identities=9%  Similarity=0.050  Sum_probs=62.3

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCc-ccCc--cceeeeehhccCCCh
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDD  196 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d  196 (214)
                      ...++|+|+  |..+..+.+..|++      +..++.+..    ...+++++.+|+.+ ++|.  -|+++...++|.+..
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~  118 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP  118 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCH
T ss_pred             CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCH
Confidence            356899997  55566677777743      334443332    23689999999986 5553  499999999999999


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      ++..++|+++++.|+||
T Consensus       119 ~~~~~~l~~~~~~L~~g  135 (227)
T 1ve3_A          119 LELNQVFKEVRRVLKPS  135 (227)
T ss_dssp             HHHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999999999986

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.67  E-value=9e-05  Score=57.49  Aligned_cols=81  Identities=15%  Similarity=0.133  Sum_probs=62.2

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhccC-CCceEEecCCCCcccCc--cceeeeehhccCCChHHHHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHN-HTVVEHVSGHMFIEVPN--GQALFMKWILSDWDDEECLK  201 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~-~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d~~~~~  201 (214)
                      ..++|+|+  |..+..+++...++      +..++.+... .++++++.+|+.+..|.  -|++++..+||.+++++...
T Consensus        48 ~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~  127 (218)
T 3ou2_A           48 GDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEA  127 (218)
T ss_dssp             SEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSCHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCCHHHHHH
Confidence            46999997  55555666654332      3344444433 36899999999977564  39999999999999999999


Q ss_pred             HHHHhHHhcCCC
Q 042599          202 ILKNCCVQCNTG  213 (214)
Q Consensus       202 IL~~~~~Al~pg  213 (214)
                      +|+++++.|+||
T Consensus       128 ~l~~~~~~L~pg  139 (218)
T 3ou2_A          128 FWESVRSAVAPG  139 (218)
T ss_dssp             HHHHHHHHEEEE
T ss_pred             HHHHHHHHcCCC
Confidence            999999999986

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=97.66  E-value=0.00015  Score=56.42  Aligned_cols=83  Identities=11%  Similarity=0.052  Sum_probs=62.3

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCC-CceEEecCCCCc-ccCc-cceeeeehhccCCChHHH
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNH-TVVEHVSGHMFI-EVPN-GQALFMKWILSDWDDEEC  199 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~-~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d~~~  199 (214)
                      ....++|+|+  |..+..+++...++      +..++.+.... .+++++.+|+.+ +.+. -|+++...+||.+++.+.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~  124 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTDDEK  124 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEESCGGGSCHHHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEECcchhcCChHHH
Confidence            3457999997  55556666654432      23444443322 489999999996 4443 499999999999999999


Q ss_pred             HHHHHHhHHhcCCC
Q 042599          200 LKILKNCCVQCNTG  213 (214)
Q Consensus       200 ~~IL~~~~~Al~pg  213 (214)
                      ..+|+++++.|+||
T Consensus       125 ~~~l~~~~~~Lkpg  138 (220)
T 3hnr_A          125 NVAIAKYSQLLNKG  138 (220)
T ss_dssp             HHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999999997

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=97.40  E-value=0.00029  Score=54.89  Aligned_cols=83  Identities=5%  Similarity=-0.070  Sum_probs=61.6

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhccC------C----CceEEecCCCCc-ccCc--cceeee
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHN------H----TVVEHVSGHMFI-EVPN--GQALFM  187 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~------~----~rv~~~~gDff~-~~P~--~d~y~l  187 (214)
                      ....++|+|.  |..+..+++..|..        +..++.+...      .    .+++++.+|+.. +.+.  -|++++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  108 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV  108 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence            3457999996  66666677767632        3344443321      1    289999999964 3332  399999


Q ss_pred             ehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          188 KWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       188 ~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..+||.+++++..++|+++++.|+||
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~Lkpg  134 (219)
T 3jwg_A          109 IEVIEHLDENRLQAFEKVLFEFTRPQ  134 (219)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999997

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=97.38  E-value=0.00035  Score=54.43  Aligned_cols=83  Identities=5%  Similarity=-0.132  Sum_probs=61.6

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhccC-----C-----CceEEecCCCCc-ccCc--cceeee
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHN-----H-----TVVEHVSGHMFI-EVPN--GQALFM  187 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~-----~-----~rv~~~~gDff~-~~P~--~d~y~l  187 (214)
                      ....++|+|.  |..+..+++..|..        +..++.+...     .     .+++++.+|+.. +.+.  -|++++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  108 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV  108 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence            3457999996  66666777766632        3344433321     1     279999999864 3332  399999


Q ss_pred             ehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          188 KWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       188 ~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..+||.+++++..++|+++++.|+||
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~Lkpg  134 (217)
T 3jwh_A          109 IEVIEHLDLSRLGAFERVLFEFAQPK  134 (217)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999997

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=97.34  E-value=0.00043  Score=54.85  Aligned_cols=79  Identities=9%  Similarity=0.131  Sum_probs=60.3

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc---ccCcc--ceeeeehhccCCChHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI---EVPNG--QALFMKWILSDWDDEE  198 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~---~~P~~--d~y~l~~ILHdw~d~~  198 (214)
                      ...++|+|+  |..+..+.+...++      +..++.+..   +++++.+|..+   ++|.+  |+++...+||.+++++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~---~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~  118 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEG---KFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPER  118 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHT---TSEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGG
T ss_pred             CCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHh---hcceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHH
Confidence            357999997  55555666655443      233444433   28999999876   56643  9999999999999999


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                      ...+|+++++.|+||
T Consensus       119 ~~~~l~~~~~~Lkpg  133 (240)
T 3dli_A          119 LFELLSLCYSKMKYS  133 (240)
T ss_dssp             HHHHHHHHHHHBCTT
T ss_pred             HHHHHHHHHHHcCCC
Confidence            999999999999997

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=97.31  E-value=0.00026  Score=55.75  Aligned_cols=80  Identities=10%  Similarity=0.015  Sum_probs=60.0

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCC-ceEEecCCCCcccCc--cceeeeehhccCCChHHHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHT-VVEHVSGHMFIEVPN--GQALFMKWILSDWDDEECL  200 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~-rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d~~~~  200 (214)
                      ...++|+|.  |..+..+++..+++      +..++.+..... +++++.+|+.+..|.  -|++++.++||.++|.  .
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~--~  120 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP--V  120 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH--H
T ss_pred             CCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH--H
Confidence            356999996  55666677777764      334444443222 899999999876554  3999999999999876  5


Q ss_pred             HHHHHhH-HhcCCC
Q 042599          201 KILKNCC-VQCNTG  213 (214)
Q Consensus       201 ~IL~~~~-~Al~pg  213 (214)
                      ++|++++ +.|+||
T Consensus       121 ~~l~~~~~~~Lkpg  134 (250)
T 2p7i_A          121 ALLKRINDDWLAEG  134 (250)
T ss_dssp             HHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHhcCCC
Confidence            8999999 999986

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=97.30  E-value=0.00029  Score=56.01  Aligned_cols=82  Identities=12%  Similarity=0.188  Sum_probs=60.0

Q ss_pred             CCceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc---CCCceEEecCCCCc-ccCc--cceeeeehhccCCCh
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH---NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDD  196 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~---~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d  196 (214)
                      ...++|+|+  |..+..+++.... +      +..++.+..   ...+++++.+|+.+ ++|.  -|+++...+||.+++
T Consensus        94 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  173 (254)
T 1xtp_A           94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTD  173 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCH
T ss_pred             CCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCCH
Confidence            356899996  5555555555322 2      233443332   12689999999985 4553  399999999999999


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      ++..++|+++++.|+||
T Consensus       174 ~~~~~~l~~~~~~Lkpg  190 (254)
T 1xtp_A          174 ADFVKFFKHCQQALTPN  190 (254)
T ss_dssp             HHHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999999986

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.29  E-value=0.00051  Score=54.82  Aligned_cols=81  Identities=12%  Similarity=0.138  Sum_probs=61.2

Q ss_pred             CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhccC---CCceEEecCCCCc-ccCc--cceeeeehhccCCChH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMHN---HTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDE  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~~---~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~  197 (214)
                      ..++|+|.  |..+..++++.. ++      +..++.+...   .++|+++.+|+.+ ++|.  -|+++...+||.++++
T Consensus        57 ~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~  136 (266)
T 3ujc_A           57 SKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLE  136 (266)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHH
T ss_pred             CEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhcChH
Confidence            46899996  656666666532 21      2344443332   2789999999986 5654  3999999999999999


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +...+|+++++.|+||
T Consensus       137 ~~~~~l~~~~~~L~pg  152 (266)
T 3ujc_A          137 NKNKLFQKCYKWLKPT  152 (266)
T ss_dssp             HHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999999999986

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=97.26  E-value=0.00038  Score=54.92  Aligned_cols=81  Identities=12%  Similarity=0.059  Sum_probs=58.3

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeeehhccCCCh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMKWILSDWDD  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d  196 (214)
                      ..++|+|.  |..+..+++....+      +..++.+..      ...+|+++.+|+.+..|.  -|+++...+||.+++
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  147 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEP  147 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSCG
T ss_pred             CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcCCH
Confidence            46899997  44444444322211      233333322      135799999999985554  399999999999999


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      ++..++|+++++.|+||
T Consensus       148 ~~~~~~l~~~~~~Lkpg  164 (235)
T 3lcc_A          148 EMRPAWAKSMYELLKPD  164 (235)
T ss_dssp             GGHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHHCCCC
Confidence            99999999999999986

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=97.23  E-value=0.00028  Score=58.04  Aligned_cols=48  Identities=15%  Similarity=0.318  Sum_probs=40.6

Q ss_pred             CceEEecCCCCccc------Cc--cceeeeehhc---c-CCChHHHHHHHHHhHHhcCCC
Q 042599          166 TVVEHVSGHMFIEV------PN--GQALFMKWIL---S-DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       166 ~rv~~~~gDff~~~------P~--~d~y~l~~IL---H-dw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+|+|+.+|+.+..      +.  -|+++...++   | +|+++...++|+++++.|+||
T Consensus       154 ~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpG  213 (292)
T 3g07_A          154 NNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPG  213 (292)
T ss_dssp             TTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             ccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCC
Confidence            47999999998532      32  3999999998   5 679999999999999999986

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=97.23  E-value=0.00048  Score=54.58  Aligned_cols=82  Identities=6%  Similarity=-0.012  Sum_probs=63.2

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc--CCCceEEecCCCCcc-cCc-------cceeeeehhccC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH--NHTVVEHVSGHMFIE-VPN-------GQALFMKWILSD  193 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~--~~~rv~~~~gDff~~-~P~-------~d~y~l~~ILHd  193 (214)
                      ...++|+|.  |..+..+++..+++      +..++.+..  ...+++++.+|+.+. .+.       -|+++...++|.
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~  136 (245)
T 3ggd_A           57 ELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHH  136 (245)
T ss_dssp             TSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTT
T ss_pred             CCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhhc
Confidence            356999996  66677778877754      334444432  235899999999972 221       389999999999


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      .++++..++|+++++.|+||
T Consensus       137 ~~~~~~~~~l~~~~~~Lkpg  156 (245)
T 3ggd_A          137 IPVEKRELLGQSLRILLGKQ  156 (245)
T ss_dssp             SCGGGHHHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999997

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=97.19  E-value=0.0003  Score=56.40  Aligned_cols=80  Identities=13%  Similarity=0.105  Sum_probs=58.0

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCc-ccCc--cceeeeehhccCCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWD  195 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~  195 (214)
                      ...++|+|+  |..+..+++..+++      +..++.+..     ..++++++.+|+.+ ++|.  -|+++...+||.|+
T Consensus        38 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~  117 (260)
T 1vl5_A           38 NEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFP  117 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGCS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhHhcC
Confidence            356899996  55566677766643      233333322     23579999999986 5664  39999999999998


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      |..  .+|+++++.|+||
T Consensus       118 d~~--~~l~~~~r~Lkpg  133 (260)
T 1vl5_A          118 NPA--SFVSEAYRVLKKG  133 (260)
T ss_dssp             CHH--HHHHHHHHHEEEE
T ss_pred             CHH--HHHHHHHHHcCCC
Confidence            764  8999999999986

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.17  E-value=0.00091  Score=50.49  Aligned_cols=83  Identities=8%  Similarity=0.034  Sum_probs=61.8

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc--cceeeee-hhccCCChHH
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMK-WILSDWDDEE  198 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~-~ILHdw~d~~  198 (214)
                      ....++|+|.  |.....+++...++      +..++.+....++++++.+|+.+ +.|.  -|++++. .++|..++++
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~  125 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDG  125 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcChHH
Confidence            3457899996  55555666653322      34455555445679999999986 5553  3999998 8999999999


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                      ...+|+++.+.|+||
T Consensus       126 ~~~~l~~~~~~l~~~  140 (195)
T 3cgg_A          126 REPALANIHRALGAD  140 (195)
T ss_dssp             HHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999999886

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=97.15  E-value=0.00033  Score=55.81  Aligned_cols=80  Identities=11%  Similarity=0.079  Sum_probs=58.8

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc--CCCceEEecCCCCc-ccCc--cceeeeehhccCCChH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH--NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDE  197 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~--~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~  197 (214)
                      ...++|+|+  |..+..+++..+ .+      +..++.+..  ...+++++.+|+.+ ++|.  -|+++...+||.++| 
T Consensus        45 ~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-  123 (253)
T 3g5l_A           45 QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS-  123 (253)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC-
T ss_pred             CCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhh-
Confidence            356899997  555666777766 22      334444332  24689999999985 5553  399999999999955 


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                       ..++|+++++.|+||
T Consensus       124 -~~~~l~~~~~~Lkpg  138 (253)
T 3g5l_A          124 -FDDICKKVYINLKSS  138 (253)
T ss_dssp             -HHHHHHHHHHHEEEE
T ss_pred             -HHHHHHHHHHHcCCC
Confidence             578999999999986

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=97.09  E-value=0.00063  Score=54.54  Aligned_cols=82  Identities=10%  Similarity=0.025  Sum_probs=61.9

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc-cceeeeeh-hccCCCh-HHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN-GQALFMKW-ILSDWDD-EEC  199 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~-~d~y~l~~-ILHdw~d-~~~  199 (214)
                      ...++|+|+  |..+..+++..+++      +..++.+.....+++++.+|+.+ +.+. -|+++... +||.+++ ++.
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~  130 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAEL  130 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHHHH
T ss_pred             CCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCHHHH
Confidence            357999997  55666677666643      34555555545689999999986 3343 49999997 9998865 788


Q ss_pred             HHHHHHhHHhcCCC
Q 042599          200 LKILKNCCVQCNTG  213 (214)
Q Consensus       200 ~~IL~~~~~Al~pg  213 (214)
                      .++|+++++.|+||
T Consensus       131 ~~~l~~~~~~L~pg  144 (263)
T 3pfg_A          131 DAALERFAAHVLPD  144 (263)
T ss_dssp             HHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHhcCCC
Confidence            89999999999986

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=96.98  E-value=0.001  Score=53.60  Aligned_cols=79  Identities=14%  Similarity=0.212  Sum_probs=59.7

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDW  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw  194 (214)
                      ..++|+|.  |..+..+++..|..        +..++.+..     ..++++++.+|+.+ +.|.  -|+++...+||.+
T Consensus        39 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  118 (276)
T 3mgg_A           39 AKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHL  118 (276)
T ss_dssp             CEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGGGC
T ss_pred             CeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhhhc
Confidence            56899996  66666778887753        233433322     23579999999996 4553  3999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|..  .+|+++++.|+||
T Consensus       119 ~~~~--~~l~~~~~~L~pg  135 (276)
T 3mgg_A          119 QSPE--EALKSLKKVLKPG  135 (276)
T ss_dssp             SCHH--HHHHHHHHHEEEE
T ss_pred             CCHH--HHHHHHHHHcCCC
Confidence            9876  8999999999986

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=96.94  E-value=0.0019  Score=52.92  Aligned_cols=82  Identities=11%  Similarity=0.100  Sum_probs=59.2

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CC----CceEEecCCCCc-ccCc-cceeee-ehhcc
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NH----TVVEHVSGHMFI-EVPN-GQALFM-KWILS  192 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~----~rv~~~~gDff~-~~P~-~d~y~l-~~ILH  192 (214)
                      ...++|+|+  |..+..+++...++      +..++.+..    ..    .+|+++.+|+.+ +.+. -|++++ ..++|
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  162 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSIN  162 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHHHT
T ss_pred             CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCcccc
Confidence            347999996  66677777664433      233433322    11    679999999997 3443 397775 58888


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+++++..++|+++++.|+||
T Consensus       163 ~~~~~~~~~~l~~~~~~L~pg  183 (299)
T 3g2m_A          163 ELDEADRRGLYASVREHLEPG  183 (299)
T ss_dssp             TSCHHHHHHHHHHHHHHEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCC
Confidence            888899999999999999986

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=96.92  E-value=0.00079  Score=50.16  Aligned_cols=78  Identities=10%  Similarity=0.067  Sum_probs=57.7

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCcccCc--cceeeeehhccCCChHHHHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFIEVPN--GQALFMKWILSDWDDEECLK  201 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d~~~~~  201 (214)
                      ...++|+|+  |..+..+++...++      +..++.+....++++++.+|  .++|.  -|++++..++|.+++.  ..
T Consensus        18 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~l~~~~~~--~~   93 (170)
T 3i9f_A           18 KGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANSFHDMDDK--QH   93 (170)
T ss_dssp             CEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESCSTTCSCH--HH
T ss_pred             CCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccchhcccCH--HH
Confidence            356899996  66666776665422      33444444436789999999  55664  4999999999999754  58


Q ss_pred             HHHHhHHhcCCC
Q 042599          202 ILKNCCVQCNTG  213 (214)
Q Consensus       202 IL~~~~~Al~pg  213 (214)
                      +|+++++.|+||
T Consensus        94 ~l~~~~~~L~pg  105 (170)
T 3i9f_A           94 VISEVKRILKDD  105 (170)
T ss_dssp             HHHHHHHHEEEE
T ss_pred             HHHHHHHhcCCC
Confidence            999999999886

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=96.89  E-value=0.0013  Score=52.08  Aligned_cols=82  Identities=9%  Similarity=0.114  Sum_probs=58.6

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhccC-----CCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMHN-----HTVVEHVSGHMFI-EVPN--GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~~-----~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw  194 (214)
                      ...++|+|+  |..+..+++... ++      +..++.+...     ..+++++.+|+.+ +.+.  -|++++..+||.+
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  159 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL  159 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred             CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhC
Confidence            356899997  444555555543 21      2334333221     3468999999875 3443  3999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++++..++|+++++.|+||
T Consensus       160 ~~~~~~~~l~~~~~~Lkpg  178 (241)
T 2ex4_A          160 TDQHLAEFLRRCKGSLRPN  178 (241)
T ss_dssp             CHHHHHHHHHHHHHHEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999986

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=96.85  E-value=0.00092  Score=51.52  Aligned_cols=77  Identities=12%  Similarity=0.210  Sum_probs=56.2

Q ss_pred             ceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599          134 PHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDW  194 (214)
Q Consensus       134 ~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw  194 (214)
                      .++|+|+  |..+..++++ |..        +..++.+..      ..++++++.+|+.+ ++|.  -|++++..+||.+
T Consensus        46 ~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~  124 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW  124 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGC
T ss_pred             EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhc
Confidence            7999997  5555666665 432        233333322      13589999999986 6664  3999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++  ...+|+++++.|+||
T Consensus       125 ~~--~~~~l~~~~~~L~pg  141 (219)
T 3dlc_A          125 ED--VATAFREIYRILKSG  141 (219)
T ss_dssp             SC--HHHHHHHHHHHEEEE
T ss_pred             cC--HHHHHHHHHHhCCCC
Confidence            55  457999999999986

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=96.85  E-value=0.0016  Score=50.47  Aligned_cols=81  Identities=9%  Similarity=0.042  Sum_probs=58.9

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhc---cCCCceEEecCCCCcccCc--cceeeeehhccCCCh-HH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM---HNHTVVEHVSGHMFIEVPN--GQALFMKWILSDWDD-EE  198 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~---~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d-~~  198 (214)
                      ..++|+|.  |..+..+++...++      +..++.+.   ...++++++.+|+.+..|.  -|+++...+||.+++ ++
T Consensus        53 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~  132 (216)
T 3ofk_A           53 SNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYLEDMTQ  132 (216)
T ss_dssp             EEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGGSSSHHH
T ss_pred             CcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHhCCCHHH
Confidence            46899996  55555666554332      23333332   2235899999999975453  399999999999997 66


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                      ..++|+++++.|+||
T Consensus       133 ~~~~l~~~~~~L~pg  147 (216)
T 3ofk_A          133 MRTAIDNMVKMLAPG  147 (216)
T ss_dssp             HHHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHHHcCCC
Confidence            779999999999986

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.85  E-value=0.001  Score=54.34  Aligned_cols=79  Identities=10%  Similarity=0.039  Sum_probs=57.8

Q ss_pred             CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCc-ccCcc--ceeeeehhccCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFI-EVPNG--QALFMKWILSDW  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw  194 (214)
                      ..++|+|+  |..+..+++..+ ++      +..++.+..      ..++|+++.+|+.+ ++|.+  |+++...+||.+
T Consensus        84 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  163 (297)
T 2o57_A           84 AKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHS  163 (297)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGC
T ss_pred             CEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhc
Confidence            56899996  555666666543 21      233333221      23689999999986 56643  999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|  ..++|+++++.|+||
T Consensus       164 ~~--~~~~l~~~~~~Lkpg  180 (297)
T 2o57_A          164 PD--KLKVFQECARVLKPR  180 (297)
T ss_dssp             SC--HHHHHHHHHHHEEEE
T ss_pred             CC--HHHHHHHHHHHcCCC
Confidence            98  689999999999986

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=96.84  E-value=0.00077  Score=52.15  Aligned_cols=80  Identities=14%  Similarity=-0.024  Sum_probs=57.7

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCcccCc--cceeeeehhccCCChHHHHHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFIEVPN--GQALFMKWILSDWDDEECLKI  202 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d~~~~~I  202 (214)
                      ..++|+|.  |..+..+++...++      +..++.+.... +++++.+|+.+.-+.  -|+++...+||.+++++...+
T Consensus        45 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~  123 (211)
T 3e23_A           45 AKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-GRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDELADV  123 (211)
T ss_dssp             CEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-TSCCEECCGGGCCCCSCEEEEEECSCGGGSCHHHHHHH
T ss_pred             CcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-CCceEEeeeccCCCCCcEEEEEecCchhhcCHHHHHHH
Confidence            56899997  55555666653322      23333333221 678888998753243  399999999999999999999


Q ss_pred             HHHhHHhcCCC
Q 042599          203 LKNCCVQCNTG  213 (214)
Q Consensus       203 L~~~~~Al~pg  213 (214)
                      |+++++.|+||
T Consensus       124 l~~~~~~Lkpg  134 (211)
T 3e23_A          124 LKLIWRALKPG  134 (211)
T ss_dssp             HHHHHHHEEEE
T ss_pred             HHHHHHhcCCC
Confidence            99999999986

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=96.82  E-value=0.0021  Score=50.51  Aligned_cols=80  Identities=9%  Similarity=0.094  Sum_probs=58.0

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc--CCCceEEecCCCCc-ccCc--cceeeeehhccCCChHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH--NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEE  198 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~--~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~  198 (214)
                      ...++|+|+  |..+..+++...++      +..++.+..  ...+++++.+|+.+ +.|.  -|+++..++||.++|. 
T Consensus        54 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-  132 (242)
T 3l8d_A           54 EAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEP-  132 (242)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSCH-
T ss_pred             CCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccCH-
Confidence            357999997  55555666654432      234444433  24689999999996 5553  3999999999999765 


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                       ..+|+++++.|+||
T Consensus       133 -~~~l~~~~~~L~pg  146 (242)
T 3l8d_A          133 -LRALNEIKRVLKSD  146 (242)
T ss_dssp             -HHHHHHHHHHEEEE
T ss_pred             -HHHHHHHHHHhCCC
Confidence             47899999999986

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=96.75  E-value=0.0016  Score=50.99  Aligned_cols=82  Identities=10%  Similarity=0.005  Sum_probs=59.8

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc-cceee-eehhccCC-ChHHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN-GQALF-MKWILSDW-DDEEC  199 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~-~d~y~-l~~ILHdw-~d~~~  199 (214)
                      ...++|+|+  |..+..+++..+++      +..++.+....++++++.+|+.+ +.+. -|+++ ...++|.. +.++.
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~  120 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEEL  120 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCSHHHH
T ss_pred             CCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCCHHHH
Confidence            356899996  66666777776643      34555555445679999999986 3333 39999 55577776 45889


Q ss_pred             HHHHHHhHHhcCCC
Q 042599          200 LKILKNCCVQCNTG  213 (214)
Q Consensus       200 ~~IL~~~~~Al~pg  213 (214)
                      .++|+++++.|+||
T Consensus       121 ~~~l~~~~~~L~pg  134 (239)
T 3bxo_A          121 GAAVASFAEHLEPG  134 (239)
T ss_dssp             HHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999999986

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=96.72  E-value=0.0014  Score=51.84  Aligned_cols=80  Identities=10%  Similarity=0.082  Sum_probs=57.5

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCc-ccCc--cceeeeehhccCCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWD  195 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~  195 (214)
                      ...++|+|+  |..+..+++..+++      +..++.+..     ..++++++.+|+.+ ++|.  -|+++...++|.|+
T Consensus        22 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  101 (239)
T 1xxl_A           22 EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFS  101 (239)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGCS
T ss_pred             CCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchhhcc
Confidence            356899996  56566677666643      233333221     23579999999875 4453  39999999999998


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      |.  ..+|+++++.|+||
T Consensus       102 ~~--~~~l~~~~~~Lkpg  117 (239)
T 1xxl_A          102 DV--RKAVREVARVLKQD  117 (239)
T ss_dssp             CH--HHHHHHHHHHEEEE
T ss_pred             CH--HHHHHHHHHHcCCC
Confidence            74  58899999999986

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.71  E-value=0.0028  Score=51.40  Aligned_cols=80  Identities=9%  Similarity=-0.013  Sum_probs=58.9

Q ss_pred             CceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehhccCCCh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDD  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d  196 (214)
                      ..++|+|.  |..+..++++.+. +      +..++.+..      ..++++++.+|+. .+|. -|+++...+||.+++
T Consensus        66 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~fD~v~~~~~l~~~~~  144 (287)
T 1kpg_A           66 MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFDEPVDRIVSIGAFEHFGH  144 (287)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCCCCCSEEEEESCGGGTCT
T ss_pred             CEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh-hCCCCeeEEEEeCchhhcCh
Confidence            46899996  5555666655442 1      233333221      1358999999995 4564 499999999999999


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      ++...+|+++++.|+||
T Consensus       145 ~~~~~~l~~~~~~Lkpg  161 (287)
T 1kpg_A          145 ERYDAFFSLAHRLLPAD  161 (287)
T ss_dssp             TTHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            89999999999999997

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.70  E-value=0.0021  Score=49.79  Aligned_cols=82  Identities=7%  Similarity=0.043  Sum_probs=59.9

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----------------CCCceEEecCCCCcc-cCc-c--
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----------------NHTVVEHVSGHMFIE-VPN-G--  182 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----------------~~~rv~~~~gDff~~-~P~-~--  182 (214)
                      ...++|+|.  |..+..++++.-++      +..++.+..                 ...+|+++.+|+++. .+. +  
T Consensus        23 ~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~f  102 (203)
T 1pjz_A           23 GARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHC  102 (203)
T ss_dssp             TCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSE
T ss_pred             CCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCE
Confidence            356899995  66666666653322      233443322                 135899999999973 332 3  


Q ss_pred             ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          183 QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       183 d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |+++.+.+||..++++-.+.|+++++.|+||
T Consensus       103 D~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg  133 (203)
T 1pjz_A          103 AAFYDRAAMIALPADMRERYVQHLEALMPQA  133 (203)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred             EEEEECcchhhCCHHHHHHHHHHHHHHcCCC
Confidence            9999999999999988889999999999997

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.63  E-value=0.0032  Score=49.00  Aligned_cols=82  Identities=13%  Similarity=0.058  Sum_probs=58.1

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc---C-------CCceEEecCCCCc-ccCc--cceeeeehh
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH---N-------HTVVEHVSGHMFI-EVPN--GQALFMKWI  190 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~---~-------~~rv~~~~gDff~-~~P~--~d~y~l~~I  190 (214)
                      ...++|+|+  |..+..+++....+      +..++.+..   .       ..+++++.+|+.+ ++|.  -|++++..+
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  110 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAF  110 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred             CCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcch
Confidence            357999997  55556666653322      233333322   1       2368999999985 5553  399999999


Q ss_pred             ccCCCh-HHHHHHHHHhHHhcCCC
Q 042599          191 LSDWDD-EECLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LHdw~d-~~~~~IL~~~~~Al~pg  213 (214)
                      ||.++| ++..++|+++++.|+||
T Consensus       111 l~~~~~~~~~~~~l~~~~~~L~pg  134 (235)
T 3sm3_A          111 LTSVPDPKERSRIIKEVFRVLKPG  134 (235)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHEEEE
T ss_pred             hhcCCCHHHHHHHHHHHHHHcCCC
Confidence            999976 55779999999999986

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=96.59  E-value=0.0016  Score=53.64  Aligned_cols=82  Identities=6%  Similarity=0.005  Sum_probs=57.5

Q ss_pred             CCceEEccCCc--cHHHHH-HhCCCc--------hHHHHhhcc------CCCceEEecCCCCc-ccCc-cceeeeehhcc
Q 042599          132 SVPHTKAQSGM--DAFAAA-AKDARM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN-GQALFMKWILS  192 (214)
Q Consensus       132 ~~~~~dvgGG~--~~~~~~-~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~-~d~y~l~~ILH  192 (214)
                      ...++|+|+|.  .+..++ ...|..        +..++.+..      ...+|+++.+|+.+ +.|. -|+++...++|
T Consensus       119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  198 (305)
T 3ocj_A          119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLNI  198 (305)
T ss_dssp             TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCSSGG
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECChhh
Confidence            45699999744  444443 456653        333433322      13469999999996 3443 39999999999


Q ss_pred             CCC-hHHHHHHHHHhHHhcCCC
Q 042599          193 DWD-DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~-d~~~~~IL~~~~~Al~pg  213 (214)
                      .++ ++.+..+|+++++.|+||
T Consensus       199 ~~~~~~~~~~~l~~~~~~Lkpg  220 (305)
T 3ocj_A          199 YEPDDARVTELYRRFWQALKPG  220 (305)
T ss_dssp             GCCCHHHHHHHHHHHHHHEEEE
T ss_pred             hcCCHHHHHHHHHHHHHhcCCC
Confidence            995 555668999999999986

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=96.59  E-value=0.0028  Score=49.08  Aligned_cols=80  Identities=13%  Similarity=0.123  Sum_probs=58.6

Q ss_pred             CCceEEccC--CccHHHHHHhC-CCc--------hHHHHhhcc-----CCCceEEecCCCCc-ccCc--cceeeeehhcc
Q 042599          132 SVPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPN--GQALFMKWILS  192 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~--~d~y~l~~ILH  192 (214)
                      ...++|+|.  |..+..+++.. |..        +..++.+..     ..++++++.+|+.+ ++|.  -|++++..++|
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  117 (219)
T 3dh0_A           38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFH  117 (219)
T ss_dssp             TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCGG
T ss_pred             CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhhh
Confidence            356899996  77777777765 542        233333322     23579999999986 4554  39999999999


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .++|.  ..+|+++++.|+||
T Consensus       118 ~~~~~--~~~l~~~~~~Lkpg  136 (219)
T 3dh0_A          118 ELSEP--LKFLEELKRVAKPF  136 (219)
T ss_dssp             GCSSH--HHHHHHHHHHEEEE
T ss_pred             hcCCH--HHHHHHHHHHhCCC
Confidence            99764  68999999999886

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=96.56  E-value=0.0019  Score=50.65  Aligned_cols=81  Identities=6%  Similarity=-0.066  Sum_probs=58.7

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCc-ccCc-cceeeeeh-hccCCC-h
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPN-GQALFMKW-ILSDWD-D  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~-~d~y~l~~-ILHdw~-d  196 (214)
                      ..++|+|+  |..+..+++...++      +..++.+..    ...+++++.+|+.+ +.|. -|++++.. +||.++ +
T Consensus        39 ~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~  118 (246)
T 1y8c_A           39 DDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDS  118 (246)
T ss_dssp             TEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCCSH
T ss_pred             CeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccccCCH
Confidence            56899996  66677777665432      233333322    12279999999986 4443 39999998 999984 5


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      ++..++|+++++.|+||
T Consensus       119 ~~~~~~l~~~~~~L~pg  135 (246)
T 1y8c_A          119 DDLKKYFKAVSNHLKEG  135 (246)
T ss_dssp             HHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            88999999999999986

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.46  E-value=0.0035  Score=49.73  Aligned_cols=79  Identities=10%  Similarity=0.097  Sum_probs=58.6

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhccCCCceEEecCCCCcccCc--cceeeeehhccCCChHHHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHNHTVVEHVSGHMFIEVPN--GQALFMKWILSDWDDEECL  200 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d~~~~  200 (214)
                      ..++|+|.  |..+..+++..|..        +..++.+....++++++.+|+.+..|.  -|+++...++|..+|  -.
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~--~~  112 (259)
T 2p35_A           35 LNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYANAVFQWVPD--HL  112 (259)
T ss_dssp             SSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEESCGGGSTT--HH
T ss_pred             CEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEeCchhhCCC--HH
Confidence            56899996  66666777776642        334444444356899999999863253  399999999999975  45


Q ss_pred             HHHHHhHHhcCCC
Q 042599          201 KILKNCCVQCNTG  213 (214)
Q Consensus       201 ~IL~~~~~Al~pg  213 (214)
                      .+|+++++.|+||
T Consensus       113 ~~l~~~~~~L~pg  125 (259)
T 2p35_A          113 AVLSQLMDQLESG  125 (259)
T ss_dssp             HHHHHHGGGEEEE
T ss_pred             HHHHHHHHhcCCC
Confidence            7899999999986

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=96.45  E-value=0.0088  Score=47.86  Aligned_cols=78  Identities=12%  Similarity=0.063  Sum_probs=53.6

Q ss_pred             CCceEEccCCc--cHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc--cceeeeehhccCCChHHHH
Q 042599          132 SVPHTKAQSGM--DAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEECL  200 (214)
Q Consensus       132 ~~~~~dvgGG~--~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~~~  200 (214)
                      ...++|+|.|.  .+..+++...++      +..++.+... .+++++.+|+.+ +.|.  -|+++...++|.++|  ..
T Consensus        35 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~  111 (261)
T 3ege_A           35 GSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH-PQVEWFTGYAENLALPDKSVDGVISILAIHHFSH--LE  111 (261)
T ss_dssp             TCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCC-TTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSS--HH
T ss_pred             CCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhc-cCCEEEECchhhCCCCCCCEeEEEEcchHhhccC--HH
Confidence            35689999744  444555422211      2334433332 389999999985 5553  399999999999965  45


Q ss_pred             HHHHHhHHhcCCC
Q 042599          201 KILKNCCVQCNTG  213 (214)
Q Consensus       201 ~IL~~~~~Al~pg  213 (214)
                      ++|+++++.|+ |
T Consensus       112 ~~l~~~~~~Lk-g  123 (261)
T 3ege_A          112 KSFQEMQRIIR-D  123 (261)
T ss_dssp             HHHHHHHHHBC-S
T ss_pred             HHHHHHHHHhC-C
Confidence            88999999998 5

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=96.45  E-value=0.0059  Score=49.31  Aligned_cols=78  Identities=12%  Similarity=0.078  Sum_probs=58.2

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCcc--ceeeeehhccCCChHHHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDEECL  200 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~~~~  200 (214)
                      ...++|+|.  |..+..+++...++      +..++.+.. .++|+++.+|+-+ ++|.+  |+++...++|-.+.+   
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~-~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~---  115 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR-HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD---  115 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC-CTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH---
T ss_pred             CCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh-cCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH---
Confidence            356899995  77777777766543      234554443 5789999999874 66754  999999999876544   


Q ss_pred             HHHHHhHHhcCCC
Q 042599          201 KILKNCCVQCNTG  213 (214)
Q Consensus       201 ~IL~~~~~Al~pg  213 (214)
                      +.|+++++.|+||
T Consensus       116 ~~~~e~~rvLkpg  128 (257)
T 4hg2_A          116 RFWAELRRVARPG  128 (257)
T ss_dssp             HHHHHHHHHEEEE
T ss_pred             HHHHHHHHHcCCC
Confidence            5789999999987

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=96.44  E-value=0.0052  Score=48.79  Aligned_cols=79  Identities=14%  Similarity=0.114  Sum_probs=57.0

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCc-ccCcc--ceeeeehhccCCChH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDE  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~  197 (214)
                      ..++|+|.  |..+..+++...++      +..++.+..    ..++++++.+|+.+ ++|.+  |+++...++|.++| 
T Consensus        41 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-  119 (263)
T 2yqz_A           41 PVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPD-  119 (263)
T ss_dssp             CEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCTT-
T ss_pred             CEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhhcCC-
Confidence            56899996  66667776654332      233333322    24689999999975 45543  99999999999986 


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                       ...+|+++++.|+||
T Consensus       120 -~~~~l~~~~~~L~pg  134 (263)
T 2yqz_A          120 -WPKVLAEAIRVLKPG  134 (263)
T ss_dssp             -HHHHHHHHHHHEEEE
T ss_pred             -HHHHHHHHHHHCCCC
Confidence             467999999999986

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=96.43  E-value=0.0023  Score=52.01  Aligned_cols=83  Identities=12%  Similarity=0.128  Sum_probs=60.7

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc---------CCCceEEecCCCCc-c---cCc--cceeee
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH---------NHTVVEHVSGHMFI-E---VPN--GQALFM  187 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~---------~~~rv~~~~gDff~-~---~P~--~d~y~l  187 (214)
                      +...++|+|.  |..+..+++..+++      +..++.+..         ...++.+..+|+.+ +   .|.  -|+++.
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~  136 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC  136 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEE
Confidence            3457999996  66666677765543      233333321         12478899999986 3   453  399999


Q ss_pred             e-hhccCCCh-----HHHHHHHHHhHHhcCCC
Q 042599          188 K-WILSDWDD-----EECLKILKNCCVQCNTG  213 (214)
Q Consensus       188 ~-~ILHdw~d-----~~~~~IL~~~~~Al~pg  213 (214)
                      . ++||.+++     ++..++|+++++.|+||
T Consensus       137 ~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkpg  168 (293)
T 3thr_A          137 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPG  168 (293)
T ss_dssp             CTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEE
T ss_pred             cChHHhhcCccccCHHHHHHHHHHHHHHcCCC
Confidence            8 99999998     99999999999999986

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.40  E-value=0.0043  Score=49.97  Aligned_cols=82  Identities=6%  Similarity=-0.042  Sum_probs=59.6

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----------------------CCCceEEecCCCCcc-cC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----------------------NHTVVEHVSGHMFIE-VP  180 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----------------------~~~rv~~~~gDff~~-~P  180 (214)
                      ...++|+|.  |..+..++++--++      +..++.+..                      ...+|+++.+|+++. .+
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~  148 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRA  148 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGG
T ss_pred             CCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcc
Confidence            356999995  66666666653322      233443321                      136899999999973 22


Q ss_pred             c-c--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          181 N-G--QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       181 ~-~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      . +  |+++.+.+||..++++-.+.++++++.|+||
T Consensus       149 ~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG  184 (252)
T 2gb4_A          149 NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE  184 (252)
T ss_dssp             CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred             cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC
Confidence            2 3  9999999999999988889999999999987

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=96.39  E-value=0.0026  Score=51.63  Aligned_cols=82  Identities=10%  Similarity=0.018  Sum_probs=59.4

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCccc-Cc-cceeeeehhccCCChH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFIEV-PN-GQALFMKWILSDWDDE  197 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~~~-P~-~d~y~l~~ILHdw~d~  197 (214)
                      ...++|+|.  |..+..+++...++      +..++.+..    ..-+++++.+|+.+.. +. -|+++...++|.++++
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~  200 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFMFLNRE  200 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSSGGGSCGG
T ss_pred             CCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccchhhCCHH
Confidence            456899996  55555666653332      223333221    1228999999998743 33 4999999999999999


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +...+|+++++.|+||
T Consensus       201 ~~~~~l~~~~~~Lkpg  216 (286)
T 3m70_A          201 RVPSIIKNMKEHTNVG  216 (286)
T ss_dssp             GHHHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999999999986

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=96.38  E-value=0.0051  Score=52.43  Aligned_cols=79  Identities=14%  Similarity=0.175  Sum_probs=57.7

Q ss_pred             CceEEccC--CccHHHHHHhC-CCc--------hHHHHhhccC-------------CCceEEecCCCCc-------ccCc
Q 042599          133 VPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSMHN-------------HTVVEHVSGHMFI-------EVPN  181 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~~~-------------~~rv~~~~gDff~-------~~P~  181 (214)
                      ..++|+|.  |..+..+++.. |..        +..++.+...             .++|+++.+|+.+       ++|.
T Consensus        85 ~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~  164 (383)
T 4fsd_A           85 ATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPD  164 (383)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCT
T ss_pred             CEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCC
Confidence            56899996  55556666654 432        2334333321             2689999999986       5664


Q ss_pred             c--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          182 G--QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       182 ~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +  |+++...+||.++|.  ..+|+++++.|+||
T Consensus       165 ~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkpg  196 (383)
T 4fsd_A          165 SSVDIVISNCVCNLSTNK--LALFKEIHRVLRDG  196 (383)
T ss_dssp             TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEE
T ss_pred             CCEEEEEEccchhcCCCH--HHHHHHHHHHcCCC
Confidence            3  999999999999874  68999999999986

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.32  E-value=0.0056  Score=49.08  Aligned_cols=79  Identities=14%  Similarity=0.052  Sum_probs=56.7

Q ss_pred             CceEEccC--CccHHHHHHhCCC------c-hHHHHhhcc------CCCceEEecCCCCc-ccCcc--ceeeeehhccCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDAR------M-NNLFNQSMH------NHTVVEHVSGHMFI-EVPNG--QALFMKWILSDW  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~------l-~~v~~~~~~------~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw  194 (214)
                      ..++|+|+  |..+..++++...      + +..++.+..      ..++++++.+|+.+ ++|.+  |+++...+||.+
T Consensus        63 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  142 (273)
T 3bus_A           63 DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHM  142 (273)
T ss_dssp             CEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTS
T ss_pred             CEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhC
Confidence            56899996  5555666665431      1 223332221      23589999999986 56643  999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|.  ..+|+++++.|+||
T Consensus       143 ~~~--~~~l~~~~~~L~pg  159 (273)
T 3bus_A          143 PDR--GRALREMARVLRPG  159 (273)
T ss_dssp             SCH--HHHHHHHHTTEEEE
T ss_pred             CCH--HHHHHHHHHHcCCC
Confidence            876  68999999999986

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=96.29  E-value=0.0033  Score=51.14  Aligned_cols=80  Identities=13%  Similarity=0.063  Sum_probs=58.4

Q ss_pred             CCceEEccC--CccHHHHHHhCCC-c--------hHHHHhhc----cCCCceEEecCCCCc-ccCc-cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDAR-M--------NNLFNQSM----HNHTVVEHVSGHMFI-EVPN-GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~-l--------~~v~~~~~----~~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw  194 (214)
                      ...++|+|.  |..+..+++.+|. .        +..++.+.    ....+++++.+|+.+ +.|. -|+++...++|.+
T Consensus        23 ~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~  102 (284)
T 3gu3_A           23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHM  102 (284)
T ss_dssp             CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCGGGC
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChhhcC
Confidence            356899997  5556677777774 2        22333222    123489999999996 3343 4999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|..  ++|+++++.|+||
T Consensus       103 ~~~~--~~l~~~~~~Lkpg  119 (284)
T 3gu3_A          103 TTPE--TMLQKMIHSVKKG  119 (284)
T ss_dssp             SSHH--HHHHHHHHTEEEE
T ss_pred             CCHH--HHHHHHHHHcCCC
Confidence            8774  8999999999986

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=96.25  E-value=0.0057  Score=49.99  Aligned_cols=80  Identities=5%  Similarity=-0.094  Sum_probs=58.4

Q ss_pred             CCCceEEccC--CccHHHHHHhC-CCc--------hHHHHhhcc-------CCCceEEecCCCCc-ccCc------c--c
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSMH-------NHTVVEHVSGHMFI-EVPN------G--Q  183 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~~-------~~~rv~~~~gDff~-~~P~------~--d  183 (214)
                      ....++|+|.  |..+..+++.. |..        +..++.+..       ..++++++.+|+.+ +.+.      +  |
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  115 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID  115 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence            3456899996  66667777654 432        233443322       25799999999986 4433      3  9


Q ss_pred             eeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          184 ALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       184 ~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +++...++|..   +..++|+++++.|+||
T Consensus       116 ~V~~~~~l~~~---~~~~~l~~~~~~Lkpg  142 (299)
T 3g5t_A          116 MITAVECAHWF---DFEKFQRSAYANLRKD  142 (299)
T ss_dssp             EEEEESCGGGS---CHHHHHHHHHHHEEEE
T ss_pred             EEeHhhHHHHh---CHHHHHHHHHHhcCCC
Confidence            99999999999   5678999999999986

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.24  E-value=0.0068  Score=47.51  Aligned_cols=80  Identities=10%  Similarity=0.097  Sum_probs=57.4

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhccC--CCceEEecCCCCc-ccCc--cceeeeehhccCCChH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMHN--HTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDE  197 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~~--~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~  197 (214)
                      ...++|+|+  |..+..+++..+ ++      +..++.+...  ..+++++.+|+.+ +.|.  -|+++...+||.+++ 
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-  122 (243)
T 3bkw_A           44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVED-  122 (243)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC-
T ss_pred             CCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccch-
Confidence            356899996  555556666644 22      3344444332  2479999999986 4553  399999999999975 


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                       ...+|+++++.|+||
T Consensus       123 -~~~~l~~~~~~L~pg  137 (243)
T 3bkw_A          123 -VARLFRTVHQALSPG  137 (243)
T ss_dssp             -HHHHHHHHHHHEEEE
T ss_pred             -HHHHHHHHHHhcCcC
Confidence             568999999999986

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=96.24  E-value=0.0044  Score=50.18  Aligned_cols=80  Identities=10%  Similarity=0.091  Sum_probs=56.9

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc------CCCceEEecCCCCcc--cCc--cceeeeehhccC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH------NHTVVEHVSGHMFIE--VPN--GQALFMKWILSD  193 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~------~~~rv~~~~gDff~~--~P~--~d~y~l~~ILHd  193 (214)
                      ...++|+|+  |..+..+++....+      +..++.+..      ..++++++.+|+.+.  .+.  -|++++..+||.
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~  148 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEW  148 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGG
T ss_pred             CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhc
Confidence            346899997  55555666653322      233333322      126899999999863  343  399999999999


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++|.  .++|+++++.|+||
T Consensus       149 ~~~~--~~~l~~~~~~Lkpg  166 (285)
T 4htf_A          149 VADP--RSVLQTLWSVLRPG  166 (285)
T ss_dssp             CSCH--HHHHHHHHHTEEEE
T ss_pred             ccCH--HHHHHHHHHHcCCC
Confidence            9876  57999999999986

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=96.23  E-value=0.0072  Score=45.76  Aligned_cols=81  Identities=9%  Similarity=-0.020  Sum_probs=58.4

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCc-ccCc-cceeeeehhccCCChH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWDDE  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d~  197 (214)
                      ..++|+|.  |..+..+++..-++      +..++.+..     ..++++++.+|+.+ +.+. -|+++...++|.++++
T Consensus        34 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~  113 (199)
T 2xvm_A           34 GKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAK  113 (199)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEESCGGGSCGG
T ss_pred             CeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEcchhhhCCHH
Confidence            47899996  55555666553222      233333221     23479999999986 3333 4999999999999999


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +..++|+++++.|+||
T Consensus       114 ~~~~~l~~~~~~L~~g  129 (199)
T 2xvm_A          114 TIPGLIANMQRCTKPG  129 (199)
T ss_dssp             GHHHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999999999986

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=96.23  E-value=0.0032  Score=51.53  Aligned_cols=47  Identities=19%  Similarity=0.251  Sum_probs=42.6

Q ss_pred             ceEEecCCCCc-ccC-cc--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          167 VVEHVSGHMFI-EVP-NG--QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       167 rv~~~~gDff~-~~P-~~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|+|..+|+++ +.| .+  |+++.++|||-++++.-.++|++++++|+||
T Consensus       195 ~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pg  245 (274)
T 1af7_A          195 YVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD  245 (274)
T ss_dssp             TEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred             cCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCC
Confidence            69999999997 466 33  9999999999999999999999999999987

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=96.20  E-value=0.0088  Score=45.76  Aligned_cols=82  Identities=5%  Similarity=0.058  Sum_probs=56.9

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc----CCCceEEecCCCCc-ccCc--cceeeeehhccCCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWD  195 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~  195 (214)
                      ...++|+|.  |.....++.... ++      +..++.+..    ...+++++.+|+.+ +.|.  -|+++...++|.++
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  103 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMR  103 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhCC
Confidence            356899996  544334433321 11      223333221    23578999999985 5553  39999999999999


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      .++..++|+++++.|+||
T Consensus       104 ~~~~~~~l~~~~~~Lkpg  121 (209)
T 2p8j_A          104 KNDVKEAIDEIKRVLKPG  121 (209)
T ss_dssp             HHHHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999999986

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.12  E-value=0.0078  Score=47.69  Aligned_cols=78  Identities=9%  Similarity=0.036  Sum_probs=56.5

Q ss_pred             CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDW  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw  194 (214)
                      ..++|+|.  |..+..+++..| .+      +..++.+..      ..++++++.+|+.+ +.|.  -|+++...++|.+
T Consensus        48 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  127 (257)
T 3f4k_A           48 AKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI  127 (257)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCCC
T ss_pred             CeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHhhc
Confidence            46999996  666677788877 22      233333221      23569999999975 4553  3999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +   -..+|+++++.|+||
T Consensus       128 ~---~~~~l~~~~~~L~pg  143 (257)
T 3f4k_A          128 G---FERGMNEWSKYLKKG  143 (257)
T ss_dssp             C---HHHHHHHHHTTEEEE
T ss_pred             C---HHHHHHHHHHHcCCC
Confidence            4   457899999999986

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.11  E-value=0.0076  Score=46.13  Aligned_cols=82  Identities=6%  Similarity=-0.065  Sum_probs=58.8

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc---CCCceEEecCCCCc-ccCc--cceeeeehhccCCC-
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH---NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWD-  195 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~---~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~-  195 (214)
                      ...++|+|.  |..+..+++..+ .+      +..++.+..   ..++++++.+|+.+ ++|.  -|+++...++|... 
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~  122 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLA  122 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTT
T ss_pred             CCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhcc
Confidence            457899996  666677777765 33      334444332   23689999999986 5553  39999888876544 


Q ss_pred             ------------hHHHHHHHHHhHHhcCCC
Q 042599          196 ------------DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 ------------d~~~~~IL~~~~~Al~pg  213 (214)
                                  .++..++|+++.+.|+||
T Consensus       123 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  152 (215)
T 2pxx_A          123 GERDPWTVSSEGVHTVDQVLSEVSRVLVPG  152 (215)
T ss_dssp             TCSCTTSCCHHHHHHHHHHHHHHHHHEEEE
T ss_pred             ccccccccccchhHHHHHHHHHHHHhCcCC
Confidence                        567799999999999986

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.11  E-value=0.0045  Score=49.06  Aligned_cols=79  Identities=9%  Similarity=-0.160  Sum_probs=56.4

Q ss_pred             CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCcccC-c-cceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFIEVP-N-GQALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~~~P-~-~d~y~l~~ILHdw~  195 (214)
                      ..++|+|.  |..+..+++... +.      +..++.+..      ..++|+++.+|+.+..+ . -|+++...++|.++
T Consensus        38 ~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~V~~~~~~~~~~  117 (256)
T 1nkv_A           38 TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAG  117 (256)
T ss_dssp             CEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCGGGTS
T ss_pred             CEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCCEEEECCChHhcC
Confidence            56899996  666666666643 22      233333321      12589999999986433 3 39999999999998


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      |  ..++|+++++.|+||
T Consensus       118 ~--~~~~l~~~~r~Lkpg  133 (256)
T 1nkv_A          118 G--FAGAEELLAQSLKPG  133 (256)
T ss_dssp             S--SHHHHHHHTTSEEEE
T ss_pred             C--HHHHHHHHHHHcCCC
Confidence            5  578899999999986

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=96.08  E-value=0.016  Score=54.47  Aligned_cols=83  Identities=4%  Similarity=-0.060  Sum_probs=62.5

Q ss_pred             CCCceEEccC--CccHHHHHHhCC-C--c------hHHHHhhcc-----------CCCceEEecCCCCc-ccCc--ccee
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDA-R--M------NNLFNQSMH-----------NHTVVEHVSGHMFI-EVPN--GQAL  185 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P-~--l------~~v~~~~~~-----------~~~rv~~~~gDff~-~~P~--~d~y  185 (214)
                      ....++|+|.  |..+..+++..| .  +      +..++.+..           ...+|+++.+|+.+ +.+.  -|++
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV  800 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG  800 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence            3467999996  666666776663 2  1      234444322           34689999999986 3443  3999


Q ss_pred             eeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          186 FMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       186 ~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++..+||.+++.....+|+++.+.|+||
T Consensus       801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG  828 (950)
T 3htx_A          801 TCLEVIEHMEEDQACEFGEKVLSLFHPK  828 (950)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999998

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=96.00  E-value=0.0073  Score=48.74  Aligned_cols=80  Identities=11%  Similarity=0.018  Sum_probs=55.9

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc-cceeeeehhccCCChHHHHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWDDEECLK  201 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d~~~~~  201 (214)
                      ...++|+|.  |..+..+++....+      +..++.+....++++++.+|+.+ +.+. -|+++...+||.++|.  ..
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~--~~  135 (279)
T 3ccf_A           58 GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSNAMLHWVKEP--EA  135 (279)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEESCGGGCSCH--HH
T ss_pred             CCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEcchhhhCcCH--HH
Confidence            356899996  55555565522111      33444444434689999999986 3333 3999999999998865  48


Q ss_pred             HHHHhHHhcCCC
Q 042599          202 ILKNCCVQCNTG  213 (214)
Q Consensus       202 IL~~~~~Al~pg  213 (214)
                      +|+++++.|+||
T Consensus       136 ~l~~~~~~Lkpg  147 (279)
T 3ccf_A          136 AIASIHQALKSG  147 (279)
T ss_dssp             HHHHHHHHEEEE
T ss_pred             HHHHHHHhcCCC
Confidence            999999999986

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=95.95  E-value=0.013  Score=48.11  Aligned_cols=78  Identities=12%  Similarity=-0.041  Sum_probs=55.8

Q ss_pred             CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDW  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw  194 (214)
                      ..++|+|+  |..+..++++.. ++      +..++.+..      ..++|+++.+|+.+ ++|.  -|+++...++|.+
T Consensus       119 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~  198 (312)
T 3vc1_A          119 DTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV  198 (312)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGS
T ss_pred             CEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhhC
Confidence            46899997  555556666522 21      233333321      23589999999986 5563  3999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +   ..++|+++.+.|+||
T Consensus       199 ~---~~~~l~~~~~~Lkpg  214 (312)
T 3vc1_A          199 D---LHDLFSEHSRFLKVG  214 (312)
T ss_dssp             C---HHHHHHHHHHHEEEE
T ss_pred             C---HHHHHHHHHHHcCCC
Confidence            4   889999999999986

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=95.92  E-value=0.02  Score=46.76  Aligned_cols=80  Identities=10%  Similarity=-0.054  Sum_probs=58.8

Q ss_pred             CceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehhccCCCh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDD  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d  196 (214)
                      ..++|+|.  |..+..++++++.-       +..++.+..      ..++|+++.+|+.+. +. -|+++...++|.++|
T Consensus        74 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~fD~v~~~~~~~~~~d  152 (302)
T 3hem_A           74 MTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPVDRIVSLGAFEHFAD  152 (302)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCCSEEEEESCGGGTTC
T ss_pred             CEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCccEEEEcchHHhcCc
Confidence            46899996  55566677765521       233333321      234899999999765 54 499999999999954


Q ss_pred             -------HHHHHHHHHhHHhcCCC
Q 042599          197 -------EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 -------~~~~~IL~~~~~Al~pg  213 (214)
                             +....+|+++.+.|+||
T Consensus       153 ~~~~~~~~~~~~~l~~~~~~Lkpg  176 (302)
T 3hem_A          153 GAGDAGFERYDTFFKKFYNLTPDD  176 (302)
T ss_dssp             CSSCCCTTHHHHHHHHHHHSSCTT
T ss_pred             cccccchhHHHHHHHHHHHhcCCC
Confidence                   78899999999999997

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=95.90  E-value=0.01  Score=48.98  Aligned_cols=81  Identities=7%  Similarity=0.102  Sum_probs=51.9

Q ss_pred             CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhccC----CC-------ceEEecCCC----Cc-----ccCcc-
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMHN----HT-------VVEHVSGHM----FI-----EVPNG-  182 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~~----~~-------rv~~~~gDf----f~-----~~P~~-  182 (214)
                      ..++|+|.  |..+..++.... ++      +..++.+...    ..       .+++...|+    +.     +.|.+ 
T Consensus        50 ~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~  129 (302)
T 2vdw_A           50 RKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGK  129 (302)
T ss_dssp             CEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSC
T ss_pred             CeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCCC
Confidence            46899995  555555554432 22      2344443321    11       256767776    21     24533 


Q ss_pred             -ceeeeehhccC-CChHHHHHHHHHhHHhcCCC
Q 042599          183 -QALFMKWILSD-WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       183 -d~y~l~~ILHd-w~d~~~~~IL~~~~~Al~pg  213 (214)
                       |+++...+||- |++++...+|+++++.|+||
T Consensus       130 FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpG  162 (302)
T 2vdw_A          130 FNIIDWQFAIHYSFHPRHYATVMNNLSELTASG  162 (302)
T ss_dssp             EEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEE
T ss_pred             eeEEEECchHHHhCCHHHHHHHHHHHHHHcCCC
Confidence             99999999985 67666789999999999997

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=95.85  E-value=0.013  Score=45.00  Aligned_cols=78  Identities=9%  Similarity=0.010  Sum_probs=54.0

Q ss_pred             CCceEEccCCcc--HHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc--cceeeeehhccCCChHHHH
Q 042599          132 SVPHTKAQSGMD--AFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEECL  200 (214)
Q Consensus       132 ~~~~~dvgGG~~--~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~~~  200 (214)
                      ...++|+|.|..  +..+  ..+++      +..++.+....++++++.+|+.+ +.|.  -|++++..+||.++|  ..
T Consensus        37 ~~~vLdiG~G~G~~~~~l--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~  112 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL--PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED--VE  112 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC--CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC--HH
T ss_pred             CCeEEEECCCCCHhHHhC--CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC--HH
Confidence            356899997444  3333  22121      23444444333689999999885 4554  399999999999985  45


Q ss_pred             HHHHHhHHhcCCC
Q 042599          201 KILKNCCVQCNTG  213 (214)
Q Consensus       201 ~IL~~~~~Al~pg  213 (214)
                      ++|+++++.|+||
T Consensus       113 ~~l~~~~~~L~pg  125 (211)
T 2gs9_A          113 RVLLEARRVLRPG  125 (211)
T ss_dssp             HHHHHHHHHEEEE
T ss_pred             HHHHHHHHHcCCC
Confidence            8999999999986

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.81  E-value=0.0076  Score=48.28  Aligned_cols=77  Identities=10%  Similarity=0.013  Sum_probs=54.5

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCc-ccCc--cceeeeehhccC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN--GQALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHd  193 (214)
                      ..++|+|.  |..+..+++. |..        +..++.+..      ..++|+++.+|+.+ +.|.  -|+++...++|.
T Consensus        48 ~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~  126 (267)
T 3kkz_A           48 SLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYN  126 (267)
T ss_dssp             CEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGG
T ss_pred             CEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCcee
Confidence            56899997  5555566665 542        233333321      23679999999976 4453  399999999999


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++   -..+|+++++.|+||
T Consensus       127 ~~---~~~~l~~~~~~Lkpg  143 (267)
T 3kkz_A          127 IG---FERGLNEWRKYLKKG  143 (267)
T ss_dssp             TC---HHHHHHHHGGGEEEE
T ss_pred             cC---HHHHHHHHHHHcCCC
Confidence            93   367899999999986

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=95.71  E-value=0.044  Score=44.92  Aligned_cols=82  Identities=12%  Similarity=0.107  Sum_probs=55.9

Q ss_pred             CCceEEccC--CccHHHHHHhCC-C-----c-hHHHHhhcc------------CCCceEEecCCCCcc-----cC--c--
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-R-----M-NNLFNQSMH------------NHTVVEHVSGHMFIE-----VP--N--  181 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~-----l-~~v~~~~~~------------~~~rv~~~~gDff~~-----~P--~--  181 (214)
                      ...++|+|.  |..+..+++... +     + +..++.+..            ...+++++.+|+.+.     +|  .  
T Consensus        35 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~  114 (313)
T 3bgv_A           35 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMC  114 (313)
T ss_dssp             CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCC
T ss_pred             CCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCC
Confidence            356899996  666666665322 1     1 233333221            224799999999853     43  2  


Q ss_pred             cceeeeehhccCC--ChHHHHHHHHHhHHhcCCC
Q 042599          182 GQALFMKWILSDW--DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       182 ~d~y~l~~ILHdw--~d~~~~~IL~~~~~Al~pg  213 (214)
                      -|+++...+||-.  +.++...+|+++++.|+||
T Consensus       115 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg  148 (313)
T 3bgv_A          115 FDICSCQFVCHYSFESYEQADMMLRNACERLSPG  148 (313)
T ss_dssp             EEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEE
T ss_pred             EEEEEEecchhhccCCHHHHHHHHHHHHHHhCCC
Confidence            3999999999875  4477889999999999986

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=95.70  E-value=0.028  Score=45.35  Aligned_cols=83  Identities=8%  Similarity=-0.043  Sum_probs=58.8

Q ss_pred             CCCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCc-cc-Cc--cceeeeehhc
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFI-EV-PN--GQALFMKWIL  191 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~-~~-P~--~d~y~l~~IL  191 (214)
                      ....++|+|.  |..+..+++... .+      +..++.+..      ...+++++.+|+.+ +. +.  -|+++...+|
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  143 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF  143 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence            3457899996  655666555422 11      233333321      12579999999996 55 33  3999999999


Q ss_pred             cC--CChHHHHHHHHHhHHhcCCC
Q 042599          192 SD--WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       192 Hd--w~d~~~~~IL~~~~~Al~pg  213 (214)
                      |.  .+.++...+|+++++.|+||
T Consensus       144 ~~~~~~~~~~~~~l~~~~~~Lkpg  167 (298)
T 1ri5_A          144 HYAFSTSESLDIAQRNIARHLRPG  167 (298)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHhcCCC
Confidence            98  78889999999999999986

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=95.60  E-value=0.019  Score=47.15  Aligned_cols=80  Identities=8%  Similarity=0.015  Sum_probs=58.5

Q ss_pred             CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehhccCCCh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDD  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d  196 (214)
                      ..++|+|.  |..+..+++... .+      +..++.+..      ..++++++.+|+.+ +|. -|+++...+||.+++
T Consensus        92 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~fD~v~~~~~l~~~~~  170 (318)
T 2fk8_A           92 MTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPVDRIVSIEAFEHFGH  170 (318)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCCSEEEEESCGGGTCG
T ss_pred             CEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCcCEEEEeChHHhcCH
Confidence            46899996  555556666532 21      233333221      12579999999865 454 499999999999999


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      ++..++|+++.+.|+||
T Consensus       171 ~~~~~~l~~~~~~Lkpg  187 (318)
T 2fk8_A          171 ENYDDFFKRCFNIMPAD  187 (318)
T ss_dssp             GGHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999999997

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=95.53  E-value=0.022  Score=43.33  Aligned_cols=78  Identities=6%  Similarity=-0.000  Sum_probs=53.0

Q ss_pred             ceEEccC--CccHHHHHHhCCCc------hHHHHhhccC----CCceEEecCCCCc-ccCc--cceeeeehhccCCChHH
Q 042599          134 PHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHN----HTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEE  198 (214)
Q Consensus       134 ~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~----~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~  198 (214)
                      .++|+|+  |..+..+++...++      +..++.+...    ..+++++.+|+.+ +.|.  -|+++..  ++.++.++
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~~~  109 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPSSL  109 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCHHH
T ss_pred             CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCHHH
Confidence            8999996  55555555543221      2333333221    2379999999986 4553  3998873  44568889


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                      ..++|+++++.|+||
T Consensus       110 ~~~~l~~~~~~L~pg  124 (202)
T 2kw5_A          110 RQQLYPKVYQGLKPG  124 (202)
T ss_dssp             HHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHHHhcCCC
Confidence            999999999999997

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=95.36  E-value=0.023  Score=44.38  Aligned_cols=80  Identities=11%  Similarity=0.139  Sum_probs=55.5

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCc-ccCc-cceeeeeh-hccCC-Ch
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPN-GQALFMKW-ILSDW-DD  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~-~d~y~l~~-ILHdw-~d  196 (214)
                      ..++|+|+  |..+..+++. -++      +..++.+..    ...+++++.+|+.+ +.|. -|++++.. ++|.+ ++
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~  113 (243)
T 3d2l_A           35 KRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTE  113 (243)
T ss_dssp             CEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGGCCSH
T ss_pred             CeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhhcCCH
Confidence            57899997  5545555554 221      223333321    23579999999986 4443 49999876 88877 67


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      ++...+|+++++.|+||
T Consensus       114 ~~~~~~l~~~~~~L~pg  130 (243)
T 3d2l_A          114 ADVKQTFDSAARLLTDG  130 (243)
T ss_dssp             HHHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            88999999999999986

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=95.35  E-value=0.038  Score=45.20  Aligned_cols=83  Identities=17%  Similarity=0.149  Sum_probs=59.9

Q ss_pred             CCCceEEccCCc----cHHHHHH-hCCCc--------hHHHHhhcc---C--CCceEEecCCCCccc-----C--cc--c
Q 042599          131 GSVPHTKAQSGM----DAFAAAA-KDARM--------NNLFNQSMH---N--HTVVEHVSGHMFIEV-----P--NG--Q  183 (214)
Q Consensus       131 g~~~~~dvgGG~----~~~~~~~-~~P~l--------~~v~~~~~~---~--~~rv~~~~gDff~~~-----P--~~--d  183 (214)
                      |...|+|+|.|.    ...++++ ..|+.        +.++..+.+   .  ..+++++.+|+.++-     |  .+  |
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D  157 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD  157 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence            557899999753    3455554 46764        445555432   1  247999999998741     2  11  3


Q ss_pred             -----eeeeehhccCCChHH-HHHHHHHhHHhcCCC
Q 042599          184 -----ALFMKWILSDWDDEE-CLKILKNCCVQCNTG  213 (214)
Q Consensus       184 -----~y~l~~ILHdw~d~~-~~~IL~~~~~Al~pg  213 (214)
                           ++++..+||--+|++ ...+|++++++|+||
T Consensus       158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PG  193 (277)
T 3giw_A          158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSG  193 (277)
T ss_dssp             TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTT
T ss_pred             cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCC
Confidence                 688999999999877 689999999999998

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=95.24  E-value=0.028  Score=43.57  Aligned_cols=78  Identities=14%  Similarity=-0.011  Sum_probs=54.0

Q ss_pred             CCceEEccC--CccHHHHHHhC-CCc-hHHHHhhccCCCceEEecCCCCc-ccCc--cceeeeehhccCCChHHHHHHHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKD-ARM-NNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEECLKILK  204 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~-P~l-~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~~~~IL~  204 (214)
                      ...++|+|+  |..+..+++.. -+. +..++.+...  +++++.+|+.+ +.|.  -|++++..+||.+++.  ..+|+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~  123 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP--ERALK  123 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--HHHHH
T ss_pred             CCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--HHHHH
Confidence            467999996  66666555440 000 2333333332  78999999875 4443  3999999999999765  58999


Q ss_pred             HhHHhcCCC
Q 042599          205 NCCVQCNTG  213 (214)
Q Consensus       205 ~~~~Al~pg  213 (214)
                      ++++.|+||
T Consensus       124 ~~~~~L~pg  132 (219)
T 1vlm_A          124 EAYRILKKG  132 (219)
T ss_dssp             HHHHHEEEE
T ss_pred             HHHHHcCCC
Confidence            999999886

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.24  E-value=0.038  Score=43.55  Aligned_cols=81  Identities=14%  Similarity=0.215  Sum_probs=55.8

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCc-ccCc-cceeeee-hhccCCChH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPN-GQALFMK-WILSDWDDE  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~-~d~y~l~-~ILHdw~d~  197 (214)
                      ..++|+|.  |..+..+++...++      +..++.+..    ...+++++.+|+.+ +.|. -|++++. ..+|.++++
T Consensus        43 ~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~  122 (252)
T 1wzn_A           43 RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEE  122 (252)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGGSCHH
T ss_pred             CEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchhcCCHH
Confidence            46899996  55555666553322      233333221    23479999999986 3443 3988875 566778889


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +..++|+++++.|+||
T Consensus       123 ~~~~~l~~~~~~L~pg  138 (252)
T 1wzn_A          123 DLRKLFSKVAEALKPG  138 (252)
T ss_dssp             HHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999999999986

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.01  E-value=0.068  Score=39.82  Aligned_cols=80  Identities=10%  Similarity=0.030  Sum_probs=54.8

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCC--ceEEecCCCCcccCc--cceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHT--VVEHVSGHMFIEVPN--GQALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~--rv~~~~gDff~~~P~--~d~y~l~~ILHdw~  195 (214)
                      ..++|+|.  |..+..+++....+      +..++.+..     ..+  |++++.+|+.++.+.  -|++++...+| |+
T Consensus        54 ~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~-~~  132 (194)
T 1dus_A           54 DDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIR-AG  132 (194)
T ss_dssp             CEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCST-TC
T ss_pred             CeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEEECCCcc-cc
Confidence            56899996  55555555552211      223332221     122  599999999987664  39999988777 56


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      .+....+|+++.+.|+||
T Consensus       133 ~~~~~~~l~~~~~~L~~g  150 (194)
T 1dus_A          133 KEVLHRIIEEGKELLKDN  150 (194)
T ss_dssp             HHHHHHHHHHHHHHEEEE
T ss_pred             hhHHHHHHHHHHHHcCCC
Confidence            778889999999999886

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=94.94  E-value=0.023  Score=47.57  Aligned_cols=81  Identities=15%  Similarity=0.127  Sum_probs=59.2

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc----CCCceEEecCCCCcccCc-cceeeeehhccC---C
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH----NHTVVEHVSGHMFIEVPN-GQALFMKWILSD---W  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~----~~~rv~~~~gDff~~~P~-~d~y~l~~ILHd---w  194 (214)
                      ..++|+|+  |..+..+++..|..        +..++.+..    ..-.++++.+|+++..+. -|+++...++|.   +
T Consensus       198 ~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Iv~~~~~~~g~~~  277 (343)
T 2pjd_A          198 GKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQT  277 (343)
T ss_dssp             SBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEEEECCCCCSSSHH
T ss_pred             CeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeEEEECCCcccCccC
Confidence            46899996  66666778888753        223333321    223467889999875454 499999999997   5


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +.+...++|+++++.|+||
T Consensus       278 ~~~~~~~~l~~~~~~Lkpg  296 (343)
T 2pjd_A          278 SLDAAQTLIRGAVRHLNSG  296 (343)
T ss_dssp             HHHHHHHHHHHHGGGEEEE
T ss_pred             CHHHHHHHHHHHHHhCCCC
Confidence            7788999999999999986

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=94.91  E-value=0.052  Score=47.05  Aligned_cols=79  Identities=16%  Similarity=0.076  Sum_probs=53.6

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc--------------CCCceEEecCCCCc-ccC----cc
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH--------------NHTVVEHVSGHMFI-EVP----NG  182 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~--------------~~~rv~~~~gDff~-~~P----~~  182 (214)
                      ...++|+|.  |..+..++...+..        +..++.+..              ...+|+++.||+++ +++    .+
T Consensus       174 gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~a  253 (438)
T 3uwp_A          174 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANT  253 (438)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCc
Confidence            356999995  66677777665532        122221110              13689999999996 342    46


Q ss_pred             ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          183 QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       183 d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |++++..++| |  .+-...|+.+.+.|+||
T Consensus       254 DVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPG  281 (438)
T 3uwp_A          254 SVIFVNNFAF-G--PEVDHQLKERFANMKEG  281 (438)
T ss_dssp             SEEEECCTTC-C--HHHHHHHHHHHTTSCTT
T ss_pred             cEEEEccccc-C--chHHHHHHHHHHcCCCC
Confidence            9999888875 2  45566778999999998

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=94.90  E-value=0.029  Score=44.74  Aligned_cols=81  Identities=7%  Similarity=0.007  Sum_probs=51.9

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCcc--ceeeeehhccCCChHHH
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDEEC  199 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~~~  199 (214)
                      ....++|+|+  |..+..+++...++      +..++.+...... .++.+|+.+ +.|.+  |++++..+++.|.++ .
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~-~  131 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN-K  131 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-H
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhcccc-H
Confidence            3456899996  55555555553322      2334433322212 278889875 45543  999988877666444 7


Q ss_pred             HHHHHHhHHhcCCC
Q 042599          200 LKILKNCCVQCNTG  213 (214)
Q Consensus       200 ~~IL~~~~~Al~pg  213 (214)
                      ..+|+++++.|+||
T Consensus       132 ~~~l~~~~~~Lkpg  145 (260)
T 2avn_A          132 DKAFSEIRRVLVPD  145 (260)
T ss_dssp             HHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHcCCC
Confidence            88999999999986

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=94.82  E-value=0.036  Score=43.36  Aligned_cols=89  Identities=7%  Similarity=0.062  Sum_probs=55.6

Q ss_pred             HHHHHhcCCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhc-----cCCCceEEecCCCCcc----cCcc--
Q 042599          124 LKNALLEGSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM-----HNHTVVEHVSGHMFIE----VPNG--  182 (214)
Q Consensus       124 ~~~~~~~g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~-----~~~~rv~~~~gDff~~----~P~~--  182 (214)
                      +.+........++|+|.  |..+..+++.+|+.        +..+..+.     ...++|+++.+|..+.    +|.+  
T Consensus        27 ~~~~f~~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~  106 (218)
T 3dxy_A           27 FPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSL  106 (218)
T ss_dssp             HHHHHSSCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCE
T ss_pred             HHHHcCCCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCCh
Confidence            33333334467899995  77777888888863        23333332     1245799999998753    5543  


Q ss_pred             ceeeeehhccCCChHHH-------HHHHHHhHHhcCCC
Q 042599          183 QALFMKWILSDWDDEEC-------LKILKNCCVQCNTG  213 (214)
Q Consensus       183 d~y~l~~ILHdw~d~~~-------~~IL~~~~~Al~pg  213 (214)
                      |.+++-... -|+....       ..+|+.+++.|+||
T Consensus       107 d~v~~~~~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpG  143 (218)
T 3dxy_A          107 RMVQLFFPD-PWHKARHNKRRIVQVPFAELVKSKLQLG  143 (218)
T ss_dssp             EEEEEESCC-CCCSGGGGGGSSCSHHHHHHHHHHEEEE
T ss_pred             heEEEeCCC-CccchhhhhhhhhhHHHHHHHHHHcCCC
Confidence            766654222 2444332       24899999999987

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=94.80  E-value=0.052  Score=41.43  Aligned_cols=76  Identities=7%  Similarity=-0.095  Sum_probs=54.8

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccC---ccceeeeehhccCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVP---NGQALFMKWILSDW  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P---~~d~y~l~~ILHdw  194 (214)
                      ..++|+|.  |..+..+++..|..        +..++.+..     ..++++++.+|+.+..+   +-|++++...++  
T Consensus        42 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~--  119 (204)
T 3e05_A           42 LVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG--  119 (204)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTT--
T ss_pred             CEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCc--
Confidence            56899996  66666777777653        233333322     23689999999987655   249988887776  


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                         +..++|+++.+.|+||
T Consensus       120 ---~~~~~l~~~~~~Lkpg  135 (204)
T 3e05_A          120 ---MLEEIIDAVDRRLKSE  135 (204)
T ss_dssp             ---CHHHHHHHHHHHCCTT
T ss_pred             ---CHHHHHHHHHHhcCCC
Confidence               5668999999999997

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=94.78  E-value=0.055  Score=39.99  Aligned_cols=74  Identities=8%  Similarity=0.004  Sum_probs=51.9

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----C-CCceEEecCCCCcccCc----cceeeeehhcc
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----N-HTVVEHVSGHMFIEVPN----GQALFMKWILS  192 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~-~~rv~~~~gDff~~~P~----~d~y~l~~ILH  192 (214)
                      ..++|+|.  |..+..+++..|..        +..++.+..     . ..++ ++.+|..+.+|.    -|++++...+|
T Consensus        27 ~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~  105 (178)
T 3hm2_A           27 ETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGGLT  105 (178)
T ss_dssp             EEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC-TT
T ss_pred             CeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECCccc
Confidence            46899997  55566677777743        233433321     1 2378 888998876663    39999999988


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .      ..+|+++.+.|+||
T Consensus       106 ~------~~~l~~~~~~L~~g  120 (178)
T 3hm2_A          106 A------PGVFAAAWKRLPVG  120 (178)
T ss_dssp             C------TTHHHHHHHTCCTT
T ss_pred             H------HHHHHHHHHhcCCC
Confidence            7      78999999999987

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=94.48  E-value=0.073  Score=40.85  Aligned_cols=77  Identities=9%  Similarity=-0.032  Sum_probs=52.9

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCc---ccCc--cceeeeehhccCCChH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFI---EVPN--GQALFMKWILSDWDDE  197 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~---~~P~--~d~y~l~~ILHdw~d~  197 (214)
                      ...++|+|+  |..+..+++. +.-       +..++.+....  .+++.+|+.+   +.|.  -|++++..+||.+++.
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~  109 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP  109 (230)
T ss_dssp             CSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--SEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH
T ss_pred             CCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--CcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH
Confidence            356899997  5555556655 421       23344333322  3788889874   3443  3999999999999876


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                        ..+|+++++.|+||
T Consensus       110 --~~~l~~~~~~L~~g  123 (230)
T 3cc8_A          110 --WAVIEKVKPYIKQN  123 (230)
T ss_dssp             --HHHHHHTGGGEEEE
T ss_pred             --HHHHHHHHHHcCCC
Confidence              48999999999886

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=94.36  E-value=0.21  Score=38.50  Aligned_cols=82  Identities=11%  Similarity=0.201  Sum_probs=52.5

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCc-c--cCcc--ceeeeehh
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFI-E--VPNG--QALFMKWI  190 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~-~--~P~~--d~y~l~~I  190 (214)
                      ....++|+|.  |..+..+++.+|+.        +..++.+..     ..++|+++.+|..+ +  +|.+  |.+++...
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            3456899995  66777888888864        233433322     24679999999875 2  5543  76654321


Q ss_pred             ccCCChHH-------HHHHHHHhHHhcCCC
Q 042599          191 LSDWDDEE-------CLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LHdw~d~~-------~~~IL~~~~~Al~pg  213 (214)
                       -.|....       ...+|+.+.+.|+||
T Consensus       118 -~p~~~~~~~~~rl~~~~~l~~~~~~Lkpg  146 (213)
T 2fca_A          118 -DPWPKKRHEKRRLTYSHFLKKYEEVMGKG  146 (213)
T ss_dssp             -CCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred             -CCCcCccccccccCcHHHHHHHHHHcCCC
Confidence             1244321       357899999999997

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=94.36  E-value=0.024  Score=46.74  Aligned_cols=81  Identities=9%  Similarity=-0.054  Sum_probs=50.1

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCccc---Cc--cceeeee
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIEV---PN--GQALFMK  188 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~~---P~--~d~y~l~  188 (214)
                      ..++|+|+  |..+..+++..|..        +.+++.+..         ..++++++.+|.++..   +.  -|+++..
T Consensus        97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d  176 (304)
T 3bwc_A           97 ERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIID  176 (304)
T ss_dssp             CEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEE
T ss_pred             CeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEEC
Confidence            46899997  55566666654532        344443322         2478999999988532   43  3999997


Q ss_pred             hhccCCChHHH--HHHHHHhHHhcCCC
Q 042599          189 WILSDWDDEEC--LKILKNCCVQCNTG  213 (214)
Q Consensus       189 ~ILHdw~d~~~--~~IL~~~~~Al~pg  213 (214)
                      ...+.++++..  ..+++++++.|+||
T Consensus       177 ~~~~~~~~~~l~~~~~l~~~~~~Lkpg  203 (304)
T 3bwc_A          177 TTDPAGPASKLFGEAFYKDVLRILKPD  203 (304)
T ss_dssp             CC---------CCHHHHHHHHHHEEEE
T ss_pred             CCCccccchhhhHHHHHHHHHHhcCCC
Confidence            77777665544  68999999999986

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=94.34  E-value=0.13  Score=39.56  Aligned_cols=82  Identities=10%  Similarity=0.134  Sum_probs=53.9

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCc-c--cCcc--ceeeeehh
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFI-E--VPNG--QALFMKWI  190 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~-~--~P~~--d~y~l~~I  190 (214)
                      ....++|+|.  |..+..+++.+|+.        +..++.+..     ..++|+++.+|+.+ +  +|.+  |++++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            3456899996  66667788888863        233333322     23689999999986 2  4543  88876643


Q ss_pred             ccCCChH-------HHHHHHHHhHHhcCCC
Q 042599          191 LSDWDDE-------ECLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LHdw~d~-------~~~~IL~~~~~Al~pg  213 (214)
                      . .|...       ....+|+++.+.|+||
T Consensus       121 ~-~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  149 (214)
T 1yzh_A          121 D-PWPKKRHEKRRLTYKTFLDTFKRILPEN  149 (214)
T ss_dssp             C-CCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred             C-CccccchhhhccCCHHHHHHHHHHcCCC
Confidence            2 24321       2357999999999987

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=94.29  E-value=0.023  Score=50.09  Aligned_cols=81  Identities=10%  Similarity=0.012  Sum_probs=58.2

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCc-ccCc-cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN-GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw  194 (214)
                      ...++|+|+  |..+..+++ .|..       ...++.+..      ..++|+++.+|+++ +.|. .|+++...++|.|
T Consensus       159 ~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~~~  237 (480)
T 3b3j_A          159 DKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYML  237 (480)
T ss_dssp             TCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHHHH
T ss_pred             CCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchHhc
Confidence            356899997  444444444 4531       223332221      13689999999997 6664 5999998888999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+++...+|.++++.|+||
T Consensus       238 ~~e~~~~~l~~~~~~Lkpg  256 (480)
T 3b3j_A          238 FNERMLESYLHAKKYLKPS  256 (480)
T ss_dssp             TCHHHHHHHHHGGGGEEEE
T ss_pred             CcHHHHHHHHHHHHhcCCC
Confidence            9999999999999999886

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=94.08  E-value=0.061  Score=42.57  Aligned_cols=81  Identities=7%  Similarity=0.035  Sum_probs=49.7

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhc-----------cCCCceEEecCCCCcc----cCcc--ce
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM-----------HNHTVVEHVSGHMFIE----VPNG--QA  184 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~-----------~~~~rv~~~~gDff~~----~P~~--d~  184 (214)
                      ...++|+|.  |..+..+++.+|+.        +..++.+.           ...++|+++.+|..+.    +|++  |.
T Consensus        47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~  126 (235)
T 3ckk_A           47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK  126 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred             CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence            356899995  77777888888863        23333221           2246799999998763    4444  77


Q ss_pred             eeeehhccCCChHH-------HHHHHHHhHHhcCCC
Q 042599          185 LFMKWILSDWDDEE-------CLKILKNCCVQCNTG  213 (214)
Q Consensus       185 y~l~~ILHdw~d~~-------~~~IL~~~~~Al~pg  213 (214)
                      +++... -.|....       ...+|+.+++.|+||
T Consensus       127 v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpG  161 (235)
T 3ckk_A          127 MFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVG  161 (235)
T ss_dssp             EEEESC-C-----------CCCHHHHHHHHHHEEEE
T ss_pred             EEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCC
Confidence            665311 1233211       136999999999987

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.06  E-value=0.038  Score=47.05  Aligned_cols=81  Identities=9%  Similarity=0.000  Sum_probs=56.9

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc--------CCCceEEecCCCCcccCc--cceeeeehhcc
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH--------NHTVVEHVSGHMFIEVPN--GQALFMKWILS  192 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~--------~~~rv~~~~gDff~~~P~--~d~y~l~~ILH  192 (214)
                      ..++|+|.  |.....+++.+|..        +..++.+..        ...+++++.+|+++++|.  -|++++.-.+|
T Consensus       224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~nppfh  303 (375)
T 4dcm_A          224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFH  303 (375)
T ss_dssp             SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECCCC-
T ss_pred             CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECCCcc
Confidence            56899996  66667788888753        223333221        113689999999998874  39999988887


Q ss_pred             C---CChHHHHHHHHHhHHhcCCC
Q 042599          193 D---WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 d---w~d~~~~~IL~~~~~Al~pg  213 (214)
                      .   .++....++|+++.+.|+||
T Consensus       304 ~~~~~~~~~~~~~l~~~~~~Lkpg  327 (375)
T 4dcm_A          304 QQHALTDNVAWEMFHHARRCLKIN  327 (375)
T ss_dssp             ------CCHHHHHHHHHHHHEEEE
T ss_pred             cCcccCHHHHHHHHHHHHHhCCCC
Confidence            4   45667778999999999986

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=94.04  E-value=0.071  Score=42.90  Aligned_cols=82  Identities=9%  Similarity=0.013  Sum_probs=55.5

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc--cceeeee------
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN--GQALFMK------  188 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~--~d~y~l~------  188 (214)
                      ...++|+|.  |..+..+++..|..        +..++.+..     ..++++++.+|++++.|.  -|+++..      
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~~~  189 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYIDE  189 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBCT
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCCCc
Confidence            346899996  55666777777753        223332221     234799999999988753  3998876      


Q ss_pred             -------hhccCCCh----------HHHHHHHHHhHHhcCCC
Q 042599          189 -------WILSDWDD----------EECLKILKNCCVQCNTG  213 (214)
Q Consensus       189 -------~ILHdw~d----------~~~~~IL~~~~~Al~pg  213 (214)
                             .+++.+++          +...++++++.+.|+||
T Consensus       190 ~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkpg  231 (276)
T 2b3t_A          190 QDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG  231 (276)
T ss_dssp             TCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred             cccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCC
Confidence                   34443332          56688999999999886

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=94.01  E-value=0.0068  Score=46.36  Aligned_cols=82  Identities=10%  Similarity=-0.001  Sum_probs=43.5

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhccCC----CceEEecCCCCcccCc-----c--ceeeee--
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHNH----TVVEHVSGHMFIEVPN-----G--QALFMK--  188 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~~----~rv~~~~gDff~~~P~-----~--d~y~l~--  188 (214)
                      ...++|+|.  |..+..+++..|..        +..++.+....    .+++++.+|++++++.     +  |+++..  
T Consensus        31 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp  110 (215)
T 4dzr_A           31 GTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPP  110 (215)
T ss_dssp             TEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEECCC
T ss_pred             CCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEECCC
Confidence            356899996  66666777877743        22333332211    1789999999886553     3  888873  


Q ss_pred             ----hhccCCChHHH------------------HHHHHHhHHhcCCC
Q 042599          189 ----WILSDWDDEEC------------------LKILKNCCVQCNTG  213 (214)
Q Consensus       189 ----~ILHdw~d~~~------------------~~IL~~~~~Al~pg  213 (214)
                          ..+|.++++..                  .++|+++.+.|+||
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  157 (215)
T 4dzr_A          111 YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARG  157 (215)
T ss_dssp             CCC------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred             CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCC
Confidence                45555555444                  78999999999987

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=93.93  E-value=0.14  Score=40.09  Aligned_cols=82  Identities=21%  Similarity=0.138  Sum_probs=52.4

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc---------hHHHHhh---cc-----CCCceEEecCCCCcccCc--cceeeeeh
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM---------NNLFNQS---MH-----NHTVVEHVSGHMFIEVPN--GQALFMKW  189 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l---------~~v~~~~---~~-----~~~rv~~~~gDff~~~P~--~d~y~l~~  189 (214)
                      ....++|+|.  |..+..+++++|..         +.+++.+   ..     ..++|+++.+|..+- |.  .|++..-.
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i~  102 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSIS  102 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEEE
Confidence            3456899995  66666777667753         2344433   22     235799999998653 53  25555555


Q ss_pred             hccCCChHHH------HHHHHHhHHhcCCC
Q 042599          190 ILSDWDDEEC------LKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~~------~~IL~~~~~Al~pg  213 (214)
                      +...|+....      ..+|+.+++.|+||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpG  132 (225)
T 3p2e_A          103 ILFPWGTLLEYVIKPNRDILSNVADLAKKE  132 (225)
T ss_dssp             EESCCHHHHHHHHTTCHHHHHHHHTTEEEE
T ss_pred             EeCCCcHHhhhhhcchHHHHHHHHHhcCCC
Confidence            5556665311      35799999999987

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=93.77  E-value=0.065  Score=44.91  Aligned_cols=81  Identities=10%  Similarity=0.029  Sum_probs=56.5

Q ss_pred             CCceEEccC--CccHHHHHHhCCC-------chHHHHhhc------cCCCceEEecCCCCc-ccCc-cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDAR-------MNNLFNQSM------HNHTVVEHVSGHMFI-EVPN-GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~-------l~~v~~~~~------~~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw  194 (214)
                      ...++|+|.  |..+..+++. +.       ....++.+.      ...++|+++.+|+.+ +.|. -|+++...++|.|
T Consensus        51 ~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~~  129 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYML  129 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBTTB
T ss_pred             cCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchhcC
Confidence            356899997  4444444443 32       111222221      113689999999986 4554 5999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..+.....|+++++.|+||
T Consensus       130 ~~~~~~~~l~~~~~~Lkpg  148 (348)
T 2y1w_A          130 FNERMLESYLHAKKYLKPS  148 (348)
T ss_dssp             TTTSHHHHHHHGGGGEEEE
T ss_pred             ChHHHHHHHHHHHhhcCCC
Confidence            9888899999999999886

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=93.75  E-value=0.048  Score=42.74  Aligned_cols=82  Identities=11%  Similarity=0.141  Sum_probs=54.7

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc----CCCceEEecCCCCc---ccCcc--ceeee-ehh--
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH----NHTVVEHVSGHMFI---EVPNG--QALFM-KWI--  190 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~----~~~rv~~~~gDff~---~~P~~--d~y~l-~~I--  190 (214)
                      ...++|+|.  |..+..+.+..+ .+      +..++.+..    ...+++++.+|+.+   ++|.+  |+++. .+.  
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~  140 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS  140 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB
T ss_pred             CCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcccc
Confidence            456899996  554555544333 11      233443322    23679999999875   46643  98877 443  


Q ss_pred             ccCCChHHHHHHHHHhHHhcCCC
Q 042599          191 LSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .|++..+.-..+|+++++.|+||
T Consensus       141 ~~~~~~~~~~~~l~~~~r~Lkpg  163 (236)
T 1zx0_A          141 EETWHTHQFNFIKNHAFRLLKPG  163 (236)
T ss_dssp             GGGTTTHHHHHHHHTHHHHEEEE
T ss_pred             hhhhhhhhHHHHHHHHHHhcCCC
Confidence            66777777788999999999987

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=93.73  E-value=0.065  Score=43.35  Aligned_cols=80  Identities=6%  Similarity=0.019  Sum_probs=49.9

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhccCC----CceEEecCCC-C-cccCc-cceeeeehhccCCChH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNH----TVVEHVSGHM-F-IEVPN-GQALFMKWILSDWDDE  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~----~rv~~~~gDf-f-~~~P~-~d~y~l~~ILHdw~d~  197 (214)
                      ..++|+|.  |..+..++++..++      +..++.+....    -.+.+...++ . ...+. -|+++...+||.|+++
T Consensus        47 ~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~  126 (261)
T 3iv6_A           47 STVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTE  126 (261)
T ss_dssp             CEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHH
T ss_pred             CEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHhCCHH
Confidence            56899997  45555566654432      23344333211    1222222232 1 11122 3999999999999999


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +....|+++.+.+ ||
T Consensus       127 ~~~~~l~~l~~lL-PG  141 (261)
T 3iv6_A          127 EARRACLGMLSLV-GS  141 (261)
T ss_dssp             HHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHhC-cC
Confidence            9999999999999 76

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=93.66  E-value=0.078  Score=42.25  Aligned_cols=80  Identities=5%  Similarity=-0.103  Sum_probs=52.4

Q ss_pred             CCceEEccC--CccHHHHHHhC-CCc-------hH-------HHHhhcc------CCCceEEecCC-CCc-c--cCcc--
Q 042599          132 SVPHTKAQS--GMDAFAAAAKD-ARM-------NN-------LFNQSMH------NHTVVEHVSGH-MFI-E--VPNG--  182 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~-P~l-------~~-------v~~~~~~------~~~rv~~~~gD-ff~-~--~P~~--  182 (214)
                      ...++|+|.  |..+..++++. |+.       ..       .++.+..      ..++|+++.+| ++. .  +|.+  
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f  123 (275)
T 3bkx_A           44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHF  123 (275)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCE
Confidence            356899996  66666666664 421       11       2333321      12689999998 663 3  3433  


Q ss_pred             ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          183 QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       183 d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |+++...+||.+++...  +++.++..++||
T Consensus       124 D~v~~~~~l~~~~~~~~--~~~~~~~l~~~g  152 (275)
T 3bkx_A          124 DRVVLAHSLWYFASANA--LALLFKNMAAVC  152 (275)
T ss_dssp             SEEEEESCGGGSSCHHH--HHHHHHHHTTTC
T ss_pred             EEEEEccchhhCCCHHH--HHHHHHHHhCCC
Confidence            99999999999998764  677777766655

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=93.65  E-value=0.035  Score=42.63  Aligned_cols=78  Identities=14%  Similarity=0.058  Sum_probs=53.1

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCcc----cC-c--cceeeeehhccCCCh
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFIE----VP-N--GQALFMKWILSDWDD  196 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~~----~P-~--~d~y~l~~ILHdw~d  196 (214)
                      ...++|+|.  |..+..+++...++      +..++.+... .+++++.+|+.+.    .+ .  -|+++...+|| +.|
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~  130 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQD  130 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSC
T ss_pred             CCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECchhh-hhh
Confidence            467999997  55555566553332      3344444443 6778888887642    22 2  39999999999 544


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                        ...+|+++++.|+||
T Consensus       131 --~~~~l~~~~~~L~pg  145 (227)
T 3e8s_A          131 --IIELLSAMRTLLVPG  145 (227)
T ss_dssp             --CHHHHHHHHHTEEEE
T ss_pred             --HHHHHHHHHHHhCCC
Confidence              458999999999986

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=93.60  E-value=0.066  Score=42.27  Aligned_cols=74  Identities=8%  Similarity=0.054  Sum_probs=50.9

Q ss_pred             CceEEccC--CccHHHHHHh-CCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeeehhccC
Q 042599          133 VPHTKAQS--GMDAFAAAAK-DARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~-~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~~ILHd  193 (214)
                      ..++|+|.  |..+..+++. .|..        +..++.+..      ..++++++.+|+.+++|.  .|++++     |
T Consensus        95 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~-----~  169 (255)
T 3mb5_A           95 DFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVIL-----D  169 (255)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEE-----C
T ss_pred             CEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEE-----C
Confidence            56899996  5566667776 5532        233433322      235699999999988885  388876     4


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      +++.  ..+|+++.+.|+||
T Consensus       170 ~~~~--~~~l~~~~~~L~~g  187 (255)
T 3mb5_A          170 LPQP--ERVVEHAAKALKPG  187 (255)
T ss_dssp             SSCG--GGGHHHHHHHEEEE
T ss_pred             CCCH--HHHHHHHHHHcCCC
Confidence            5544  46899999999886

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=92.74  E-value=0.25  Score=38.97  Aligned_cols=77  Identities=4%  Similarity=-0.039  Sum_probs=53.9

Q ss_pred             CceEEccCC--ccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc---cceeeeehhccC
Q 042599          133 VPHTKAQSG--MDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN---GQALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgGG--~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~---~d~y~l~~ILHd  193 (214)
                      ..+.|+|.|  ..+..+++..|..        +..++.+..      ..++|++..+|.|+++|.   .|++++..+   
T Consensus        17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~---   93 (225)
T 3kr9_A           17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM---   93 (225)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE---
T ss_pred             CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC---
Confidence            578999964  4455666777742        233333322      235899999999998883   488887754   


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                       ..+....||..+.+.|+|+
T Consensus        94 -Gg~~i~~Il~~~~~~L~~~  112 (225)
T 3kr9_A           94 -GGRLIARILEEGLGKLANV  112 (225)
T ss_dssp             -CHHHHHHHHHHTGGGCTTC
T ss_pred             -ChHHHHHHHHHHHHHhCCC
Confidence             4566789999999988875

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=92.73  E-value=0.082  Score=41.76  Aligned_cols=76  Identities=13%  Similarity=0.134  Sum_probs=48.4

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-------------CCCceEEecCCCCcccC----cc--c
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-------------NHTVVEHVSGHMFIEVP----NG--Q  183 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-------------~~~rv~~~~gDff~~~P----~~--d  183 (214)
                      ..++|+|.  |..+..+++..|+.        +..++.+..             ..++|+++.+|.++.+|    .+  |
T Consensus        51 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d  130 (246)
T 2vdv_E           51 VTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLS  130 (246)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEE
T ss_pred             CEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccC
Confidence            56899996  66677788888862        233332211             23679999999987444    33  3


Q ss_pred             eeeeehhccCCChHHH-----------HHHHHHhHHhcCCC
Q 042599          184 ALFMKWILSDWDDEEC-----------LKILKNCCVQCNTG  213 (214)
Q Consensus       184 ~y~l~~ILHdw~d~~~-----------~~IL~~~~~Al~pg  213 (214)
                      .++     ++++|...           ..+|+++.+.|+||
T Consensus       131 ~v~-----~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkpg  166 (246)
T 2vdv_E          131 KMF-----FCFPDPHFKQRKHKARIITNTLLSEYAYVLKEG  166 (246)
T ss_dssp             EEE-----EESCCCC------CSSCCCHHHHHHHHHHEEEE
T ss_pred             EEE-----EECCCcccccchhHHhhccHHHHHHHHHHcCCC
Confidence            333     23344321           47999999999886

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=92.63  E-value=0.12  Score=43.11  Aligned_cols=80  Identities=10%  Similarity=0.014  Sum_probs=54.7

Q ss_pred             ceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCc---ccCc--cceeeeehhccC
Q 042599          134 PHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFI---EVPN--GQALFMKWILSD  193 (214)
Q Consensus       134 ~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~---~~P~--~d~y~l~~ILHd  193 (214)
                      .++|+||  |..+..+++.+|..        +.+++.+..     ..+|++++.+|.++   ..+.  -|+++..-..|.
T Consensus        92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~  171 (317)
T 3gjy_A           92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGA  171 (317)
T ss_dssp             EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTS
T ss_pred             EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCcc
Confidence            6899997  55666777778865        345555432     24789999999875   3443  399888655454


Q ss_pred             CChHH--HHHHHHHhHHhcCCC
Q 042599          194 WDDEE--CLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~--~~~IL~~~~~Al~pg  213 (214)
                      .....  ....+++|++.|+||
T Consensus       172 ~~~~~L~t~efl~~~~r~Lkpg  193 (317)
T 3gjy_A          172 ITPQNFTTVEFFEHCHRGLAPG  193 (317)
T ss_dssp             CCCGGGSBHHHHHHHHHHEEEE
T ss_pred             ccchhhhHHHHHHHHHHhcCCC
Confidence            33322  267899999999876

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=92.54  E-value=0.13  Score=38.31  Aligned_cols=75  Identities=7%  Similarity=-0.000  Sum_probs=52.5

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCcccCcc--ceeeeehhccCCChH-----
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFIEVPNG--QALFMKWILSDWDDE-----  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~~~P~~--d~y~l~~ILHdw~d~-----  197 (214)
                      ..++|+|.  |..+..++++. .+      +..++.    ..+++++.+|++++.+.+  |+++..-.+|..++.     
T Consensus        25 ~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~   99 (170)
T 3q87_B           25 KIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGG   99 (170)
T ss_dssp             CEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTTBC
T ss_pred             CeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----ccCCeEEECChhhhcccCCCCEEEECCCCccCCccccccC
Confidence            47899996  55555566555 32      122332    568999999999987743  999998888866554     


Q ss_pred             --HHHHHHHHhHHhcCCC
Q 042599          198 --ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 --~~~~IL~~~~~Al~pg  213 (214)
                        +...+++++.+.+ ||
T Consensus       100 ~~~~~~~~~~~~~~l-pg  116 (170)
T 3q87_B          100 GYLGREVIDRFVDAV-TV  116 (170)
T ss_dssp             CGGGCHHHHHHHHHC-CS
T ss_pred             CcchHHHHHHHHhhC-CC
Confidence              5667888888777 54

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=92.45  E-value=0.038  Score=43.66  Aligned_cols=46  Identities=11%  Similarity=0.008  Sum_probs=36.5

Q ss_pred             e-EEecCCCCccc--Cc---c--ceeeeehhccCCC--hHHHHHHHHHhHHhcCCC
Q 042599          168 V-EHVSGHMFIEV--PN---G--QALFMKWILSDWD--DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       168 v-~~~~gDff~~~--P~---~--d~y~l~~ILHdw~--d~~~~~IL~~~~~Al~pg  213 (214)
                      | +++.+|+.+..  |.   +  |+++...+||..+  .++-..+|+++++.|+||
T Consensus       136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg  191 (265)
T 2i62_A          136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG  191 (265)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCC
Confidence            8 99999998632  22   3  9999999999433  347789999999999987

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=92.19  E-value=0.19  Score=38.11  Aligned_cols=76  Identities=5%  Similarity=-0.010  Sum_probs=51.5

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc--cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN--GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw  194 (214)
                      ...++|+|.  |..+..++...|..        +..++.+..     ..++++++.+|+.+..|.  -|+++... +++ 
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~-~~~-  143 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA-FAS-  143 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC-SSS-
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec-cCC-
Confidence            357899996  77777888877753        233333221     234599999999975553  39888653 233 


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                          ...+|+++.+.|+||
T Consensus       144 ----~~~~l~~~~~~L~~g  158 (207)
T 1jsx_A          144 ----LNDMVSWCHHLPGEQ  158 (207)
T ss_dssp             ----HHHHHHHHTTSEEEE
T ss_pred             ----HHHHHHHHHHhcCCC
Confidence                458999999999886

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=92.19  E-value=0.18  Score=40.52  Aligned_cols=74  Identities=9%  Similarity=0.063  Sum_probs=50.2

Q ss_pred             CceEEccC--CccHHHHHHh-CCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeeehhccC
Q 042599          133 VPHTKAQS--GMDAFAAAAK-DARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~-~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~~ILHd  193 (214)
                      ..++|+|+  |..+..+++. .|..        +..++.+..      ..++++++.+|+.+++|.  -|++++     +
T Consensus       112 ~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~-----~  186 (275)
T 1yb2_A          112 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIA-----D  186 (275)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEE-----C
T ss_pred             CEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEE-----c
Confidence            46899996  5555666666 5532        233333321      136899999999987774  398887     4


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      +++.  .++|+++.+.|+||
T Consensus       187 ~~~~--~~~l~~~~~~Lkpg  204 (275)
T 1yb2_A          187 IPDP--WNHVQKIASMMKPG  204 (275)
T ss_dssp             CSCG--GGSHHHHHHTEEEE
T ss_pred             CcCH--HHHHHHHHHHcCCC
Confidence            4443  47899999999886

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=91.94  E-value=0.33  Score=37.70  Aligned_cols=77  Identities=9%  Similarity=0.071  Sum_probs=50.2

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhc---cCCCceEEecCCCCcc---cC--c-cceeeeehhcc
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM---HNHTVVEHVSGHMFIE---VP--N-GQALFMKWILS  192 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~---~~~~rv~~~~gDff~~---~P--~-~d~y~l~~ILH  192 (214)
                      ...++|+|.  |..+..+++..|..        +..++.+.   ...++++++.+|+.++   .|  . -|+++     |
T Consensus        75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~-----~  149 (230)
T 1fbn_A           75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY-----E  149 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE-----E
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE-----E
Confidence            356899996  56666677776631        23333222   1237899999999862   23  2 37776     7


Q ss_pred             CCChH-HHHHHHHHhHHhcCCC
Q 042599          193 DWDDE-ECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~-~~~~IL~~~~~Al~pg  213 (214)
                      +.++. ....+|+++.+.|+||
T Consensus       150 ~~~~~~~~~~~l~~~~~~Lkpg  171 (230)
T 1fbn_A          150 DVAQPNQAEILIKNAKWFLKKG  171 (230)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEE
T ss_pred             ecCChhHHHHHHHHHHHhCCCC
Confidence            76654 4466699999999886

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=91.64  E-value=0.038  Score=43.04  Aligned_cols=74  Identities=14%  Similarity=0.053  Sum_probs=50.5

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCcccC---cc--ceeeeehhccCCChHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFIEVP---NG--QALFMKWILSDWDDEE  198 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~~~P---~~--d~y~l~~ILHdw~d~~  198 (214)
                      ...++|+|.  |..+..+++....+      +..++.+....++++++.+|+.+.+|   .+  |+++..        .+
T Consensus        49 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~--------~~  120 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR--------RG  120 (226)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--------SC
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--------CC
Confidence            356999996  55555666653322      34455554446789999999987555   33  888876        24


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                      ...+|+++++.|+||
T Consensus       121 ~~~~l~~~~~~Lkpg  135 (226)
T 3m33_A          121 PTSVILRLPELAAPD  135 (226)
T ss_dssp             CSGGGGGHHHHEEEE
T ss_pred             HHHHHHHHHHHcCCC
Confidence            557788888888886

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=91.15  E-value=0.045  Score=37.26  Aligned_cols=43  Identities=9%  Similarity=0.184  Sum_probs=38.8

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP   72 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~   72 (214)
                      ||..+|++++.+.+.++.|...|+++..          .+.|.+|+.+..+..
T Consensus        26 La~~~~ls~~~~~~~l~~L~~~GLI~~~----------~~~~~LT~kG~~~l~   68 (95)
T 1r7j_A           26 IMYGANLSYALTGRYIKMLMDLEIIRQE----------GKQYMLTKKGEELLE   68 (95)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECHHHHHHHH
T ss_pred             HHHHhCcCHHHHHHHHHHHHHCCCeEEE----------CCeeEEChhHHHHHH
Confidence            8899999999999999999999999987          456999999987653

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=91.12  E-value=0.15  Score=35.66  Aligned_cols=45  Identities=16%  Similarity=0.234  Sum_probs=39.3

Q ss_pred             cCCCC--CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCCC
Q 042599           20 LPKNN--KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPN   73 (214)
Q Consensus        20 LA~~~--~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~   73 (214)
                      ||+.+  |++...+.+-|+.|...|+++..     .    .+.|++|+.++.++..
T Consensus        33 LA~~l~~giS~~aVs~rL~~Le~~GLV~~~-----~----rg~Y~LT~~G~~~l~~   79 (111)
T 3b73_A           33 LEDRDEIRISKSSVSRRLKKLADHDLLQPL-----A----NGVYVITEEGEAYLNG   79 (111)
T ss_dssp             HHTSTTCCSCHHHHHHHHHHHHHTTSEEEC-----S----TTCEEECHHHHHHHTT
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHCCCEEec-----C----CceEEECchHHHHHHH
Confidence            99999  99999999999999999999985     1    4589999999876644

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=91.09  E-value=0.21  Score=39.24  Aligned_cols=88  Identities=11%  Similarity=0.095  Sum_probs=54.0

Q ss_pred             HHHhcCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhc----cCCCceEEecCCCCc---ccCcc--ceeee
Q 042599          126 NALLEGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSM----HNHTVVEHVSGHMFI---EVPNG--QALFM  187 (214)
Q Consensus       126 ~~~~~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~----~~~~rv~~~~gDff~---~~P~~--d~y~l  187 (214)
                      +.+......++|||.  |..+..+++..|.-       +.+++.+.    ....+++++.+|..+   ++|.+  |++++
T Consensus        55 ~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~  134 (236)
T 3orh_A           55 AAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             HHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             HhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence            333333456999996  55555666666642       45555543    234578888888653   45543  66654


Q ss_pred             eh---hccCCChHHHHHHHHHhHHhcCCC
Q 042599          188 KW---ILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       188 ~~---ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      --   ..+.+.-.+-..+++.+++.|+||
T Consensus       135 D~~~~~~~~~~~~~~~~~~~e~~rvLkPG  163 (236)
T 3orh_A          135 DTYPLSEETWHTHQFNFIKNHAFRLLKPG  163 (236)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred             eeeecccchhhhcchhhhhhhhhheeCCC
Confidence            22   223334445678899999999997

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=91.01  E-value=0.17  Score=39.51  Aligned_cols=78  Identities=8%  Similarity=0.108  Sum_probs=52.4

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccC---c--cceeeeeh
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP---N--GQALFMKW  189 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P---~--~d~y~l~~  189 (214)
                      ....++|+|.  |..+..+++..|..        +..++.+..      ..++|+++.+|+.+..|   .  -|++++. 
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~-  149 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID-  149 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE-
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc-
Confidence            3457899996  66666677765642        233333321      13589999999987554   2  3888754 


Q ss_pred             hccCCChHHHHHHHHHhHHhcCCC
Q 042599          190 ILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                          .+.+....+|+++.+.|+||
T Consensus       150 ----~~~~~~~~~l~~~~~~Lkpg  169 (232)
T 3ntv_A          150 ----AAKAQSKKFFEIYTPLLKHQ  169 (232)
T ss_dssp             ----TTSSSHHHHHHHHGGGEEEE
T ss_pred             ----CcHHHHHHHHHHHHHhcCCC
Confidence                34455677999999999886

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=90.89  E-value=0.35  Score=38.23  Aligned_cols=78  Identities=12%  Similarity=0.037  Sum_probs=53.1

Q ss_pred             CCCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCcccC---c---cceeee
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP---N---GQALFM  187 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P---~---~d~y~l  187 (214)
                      ....++|+|.  |..+..+++..| ..        +..++.+..      ..++|+++.+|..+.+|   .   -|++++
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~  142 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI  142 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence            3467899996  666777788776 32        233333221      23589999999876332   2   388876


Q ss_pred             ehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          188 KWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       188 ~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                           |.+.......|+++.+.|+||
T Consensus       143 -----d~~~~~~~~~l~~~~~~LkpG  163 (248)
T 3tfw_A          143 -----DADKPNNPHYLRWALRYSRPG  163 (248)
T ss_dssp             -----CSCGGGHHHHHHHHHHTCCTT
T ss_pred             -----CCchHHHHHHHHHHHHhcCCC
Confidence                 345666778999999999997

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=90.48  E-value=0.1  Score=38.69  Aligned_cols=77  Identities=10%  Similarity=-0.003  Sum_probs=51.1

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----C-CCceEEecCCCCcccCc---cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----N-HTVVEHVSGHMFIEVPN---GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~-~~rv~~~~gDff~~~P~---~d~y~l~~ILHdw  194 (214)
                      ...++|+|.  |..+..+++....+      +..++.+..     . .++++++.+|+.+++|.   -|++++..++|++
T Consensus        34 ~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~  113 (192)
T 1l3i_A           34 NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL  113 (192)
T ss_dssp             TCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCchHHH
Confidence            356899996  55555555554221      223332221     1 26899999999876553   4999988877654


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                           ..+|+++.+.|+||
T Consensus       114 -----~~~l~~~~~~l~~g  127 (192)
T 1l3i_A          114 -----QEILRIIKDKLKPG  127 (192)
T ss_dssp             -----HHHHHHHHHTEEEE
T ss_pred             -----HHHHHHHHHhcCCC
Confidence                 78899999999886

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=90.14  E-value=0.14  Score=41.50  Aligned_cols=82  Identities=6%  Similarity=-0.051  Sum_probs=50.9

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCccc--C-c-cceeeee
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIEV--P-N-GQALFMK  188 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~~--P-~-~d~y~l~  188 (214)
                      ...++|+|+  |..+.++++..|..        +.+++.+..         ..+|++++.+|.++-+  + + -|++++.
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d  155 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD  155 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence            346899997  55556666654532        344443321         2479999999988643  2 2 3998885


Q ss_pred             hhccCCChHH--HHHHHHHhHHhcCCC
Q 042599          189 WILSDWDDEE--CLKILKNCCVQCNTG  213 (214)
Q Consensus       189 ~ILHdw~d~~--~~~IL~~~~~Al~pg  213 (214)
                      -..|..+.+.  ...+++++++.|+||
T Consensus       156 ~~~~~~~~~~l~~~~~~~~~~~~L~pg  182 (275)
T 1iy9_A          156 STEPVGPAVNLFTKGFYAGIAKALKED  182 (275)
T ss_dssp             CSSCCSCCCCCSTTHHHHHHHHHEEEE
T ss_pred             CCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence            4333332211  367889999999876

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=89.89  E-value=0.2  Score=39.30  Aligned_cols=74  Identities=12%  Similarity=0.097  Sum_probs=49.5

Q ss_pred             CceEEccC--CccHHHHHHh-CCCc--------hHHHHhhcc------CCCceEEecCCCCcc-cCc--cceeeeehhcc
Q 042599          133 VPHTKAQS--GMDAFAAAAK-DARM--------NNLFNQSMH------NHTVVEHVSGHMFIE-VPN--GQALFMKWILS  192 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~-~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~-~P~--~d~y~l~~ILH  192 (214)
                      ..++|+|.  |..+..+++. .|..        +..++.+..      ..++++++.+|+.+. +|.  .|++++     
T Consensus        98 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~-----  172 (258)
T 2pwy_A           98 MRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVAL-----  172 (258)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEE-----
T ss_pred             CEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEE-----
Confidence            56899996  5555666666 4532        233333321      146899999999975 664  498887     


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |+++.  ..+|+++.+.|+||
T Consensus       173 ~~~~~--~~~l~~~~~~L~~g  191 (258)
T 2pwy_A          173 DLMEP--WKVLEKAALALKPD  191 (258)
T ss_dssp             ESSCG--GGGHHHHHHHEEEE
T ss_pred             CCcCH--HHHHHHHHHhCCCC
Confidence            45543  37899999999886

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=89.87  E-value=0.28  Score=35.60  Aligned_cols=80  Identities=13%  Similarity=-0.003  Sum_probs=53.9

Q ss_pred             CceEEccC--CccHHHHHHhC-CCchH-H--HHhhccCCCceEEecCCCCcc---------cCc--cceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKD-ARMNN-L--FNQSMHNHTVVEHVSGHMFIE---------VPN--GQALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~-P~l~~-v--~~~~~~~~~rv~~~~gDff~~---------~P~--~d~y~l~~ILHdw~  195 (214)
                      ..++|+|.  |..+..+++.. |...- .  ++. +....+++++.+|+.+.         +|.  -|+++....+|..+
T Consensus        24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~  102 (180)
T 1ej0_A           24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSG  102 (180)
T ss_dssp             CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCS
T ss_pred             CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccC
Confidence            46899996  55556666663 43211 0  112 33347899999999863         563  39999988887655


Q ss_pred             hH---H------HHHHHHHhHHhcCCC
Q 042599          196 DE---E------CLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~---~------~~~IL~~~~~Al~pg  213 (214)
                      +.   .      ...+|+++.+.|+||
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~~~L~~g  129 (180)
T 1ej0_A          103 TPAVDIPRAMYLVELALEMCRDVLAPG  129 (180)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             CCccchHHHHHHHHHHHHHHHHHcCCC
Confidence            43   1      268899999999886

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=89.82  E-value=0.42  Score=36.66  Aligned_cols=78  Identities=12%  Similarity=0.048  Sum_probs=52.5

Q ss_pred             CCCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhc------cCCCceEEecCCCCcccCc--------ccee
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSM------HNHTVVEHVSGHMFIEVPN--------GQAL  185 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~------~~~~rv~~~~gDff~~~P~--------~d~y  185 (214)
                      ....++|+|.  |..+..+++..| ..        +..++.+.      ...++|+++.+|..+.+|.        -|++
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v  137 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI  137 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence            3457899996  666777788776 22        22333222      1235799999999864331        2777


Q ss_pred             eeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          186 FMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       186 ~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++.     .+.+....+|+++.+.|+||
T Consensus       138 ~~d-----~~~~~~~~~l~~~~~~L~pg  160 (223)
T 3duw_A          138 FID-----ADKQNNPAYFEWALKLSRPG  160 (223)
T ss_dssp             EEC-----SCGGGHHHHHHHHHHTCCTT
T ss_pred             EEc-----CCcHHHHHHHHHHHHhcCCC
Confidence            654     44556678999999999997

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=89.61  E-value=0.088  Score=42.77  Aligned_cols=42  Identities=10%  Similarity=0.086  Sum_probs=34.3

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      ||+++|++...+.|+|+.|+..|+++++     +    +++|++++....|
T Consensus        51 ia~~lgl~ksTv~RlL~tL~~~G~v~~~-----~----~~~Y~LG~~~~~l   92 (275)
T 3mq0_A           51 LTRFLDLPKSSAHGLLAVMTELDLLARS-----A----DGTLRIGPHSLRW   92 (275)
T ss_dssp             HHHHHTCC--CHHHHHHHHHHTTSEEEC-----T----TSEEEECTHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEEC-----C----CCcEEehHHHHHH
Confidence            8999999999999999999999999986     2    4689998865443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=89.58  E-value=0.75  Score=38.39  Aligned_cols=81  Identities=14%  Similarity=0.098  Sum_probs=51.3

Q ss_pred             CCceEEccC--CccHHHHHHhCCC-------chHHHHhhc------cCCCceEEecCCCCc-ccCc--cceeeeehhccC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDAR-------MNNLFNQSM------HNHTVVEHVSGHMFI-EVPN--GQALFMKWILSD  193 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~-------l~~v~~~~~------~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHd  193 (214)
                      ...++|+|.  |..+..++++ +.       +...++.+.      ...++|+++.+|+.+ ++|.  -|+++...+.|.
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~  145 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  145 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             CCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence            357899997  5444455554 32       122333222      123579999999996 5673  499997665444


Q ss_pred             C-ChHHHHHHHHHhHHhcCCC
Q 042599          194 W-DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w-~d~~~~~IL~~~~~Al~pg  213 (214)
                      . ..+....+|+.+.+.|+||
T Consensus       146 l~~~~~~~~~l~~~~r~Lkpg  166 (349)
T 3q7e_A          146 LFYESMLNTVLHARDKWLAPD  166 (349)
T ss_dssp             BTBTCCHHHHHHHHHHHEEEE
T ss_pred             ccCchhHHHHHHHHHHhCCCC
Confidence            3 2344557889999999886

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=89.57  E-value=0.12  Score=32.57  Aligned_cols=36  Identities=14%  Similarity=0.199  Sum_probs=30.8

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLA   64 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t   64 (214)
                      ||+.+|++...+.|+|..|...|++..+     .    .+.|.++
T Consensus        31 LA~~lglsr~tv~~~l~~L~~~G~I~~~-----~----~G~y~lg   66 (67)
T 2heo_A           31 LVKKCQVPKKTLNQVLYRLKKEDRVSSP-----S----PKYWSIG   66 (67)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHTTSEEEE-----E----TTEEEEC
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCcEecC-----C----CceEeeC
Confidence            9999999999999999999999998764     1    5677653

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=89.56  E-value=0.66  Score=35.40  Aligned_cols=79  Identities=11%  Similarity=0.174  Sum_probs=50.3

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHH----hhc-----cCCCceEEecCCCCc-ccCcc-ceeeeehh
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFN----QSM-----HNHTVVEHVSGHMFI-EVPNG-QALFMKWI  190 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~----~~~-----~~~~rv~~~~gDff~-~~P~~-d~y~l~~I  190 (214)
                      ...++|+|.  |..+..+++.+|..        +..++    .+.     ...++++++.+|+.+ +.+.+ |.++   +
T Consensus        28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~---~  104 (218)
T 3mq2_A           28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH---V  104 (218)
T ss_dssp             SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE---E
T ss_pred             CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE---E
Confidence            356899996  66677788887753        22222    121     124589999999986 44432 6666   2


Q ss_pred             ccCCChHH------HHHHHHHhHHhcCCC
Q 042599          191 LSDWDDEE------CLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LHdw~d~~------~~~IL~~~~~Al~pg  213 (214)
                      +..|....      ...+|+++++.|+||
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  133 (218)
T 3mq2_A          105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPG  133 (218)
T ss_dssp             ESCCHHHHHHHHTSSSHHHHHHHHTEEEE
T ss_pred             EccchhhhhhhhccHHHHHHHHHHHcCCC
Confidence            23343331      168899999999986

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=89.41  E-value=0.29  Score=38.00  Aligned_cols=77  Identities=10%  Similarity=0.093  Sum_probs=52.4

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccC-----c-cceeeeeh
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP-----N-GQALFMKW  189 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P-----~-~d~y~l~~  189 (214)
                      ...++|+|.  |..+..+++..|..        +..++.+..      ..++|+++.+|+.+.+|     . -|++++..
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  134 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA  134 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence            357899996  66667777777642        233333321      12579999999987432     2 39988866


Q ss_pred             hccCCChHHHHHHHHHhHHhcCCC
Q 042599          190 ILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..+     ....+|+++.+.|+||
T Consensus       135 ~~~-----~~~~~l~~~~~~L~pg  153 (233)
T 2gpy_A          135 AKG-----QYRRFFDMYSPMVRPG  153 (233)
T ss_dssp             GGS-----CHHHHHHHHGGGEEEE
T ss_pred             CHH-----HHHHHHHHHHHHcCCC
Confidence            654     5578899999999886

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=89.31  E-value=0.19  Score=40.80  Aligned_cols=81  Identities=6%  Similarity=-0.141  Sum_probs=52.1

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCccc---Cc-cceeeeeh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIEV---PN-GQALFMKW  189 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~~---P~-~d~y~l~~  189 (214)
                      ..++|+|+  |..+.++++..|..        +.+++.+..         ..++++++.+|..+.+   +. -|++++..
T Consensus        80 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~  159 (283)
T 2i7c_A           80 KNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDS  159 (283)
T ss_dssp             CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEEC
T ss_pred             CeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcC
Confidence            46899997  55566666655532        344444322         1478999999987633   33 39998854


Q ss_pred             hccCCChHHH--HHHHHHhHHhcCCC
Q 042599          190 ILSDWDDEEC--LKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~~--~~IL~~~~~Al~pg  213 (214)
                      ..|.-+.+..  ..+++++++.|+||
T Consensus       160 ~~~~~~~~~l~~~~~l~~~~~~L~pg  185 (283)
T 2i7c_A          160 SDPIGPAETLFNQNFYEKIYNALKPN  185 (283)
T ss_dssp             CCTTTGGGGGSSHHHHHHHHHHEEEE
T ss_pred             CCCCCcchhhhHHHHHHHHHHhcCCC
Confidence            4332223222  68999999999886

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=89.12  E-value=0.65  Score=35.97  Aligned_cols=77  Identities=10%  Similarity=0.011  Sum_probs=49.7

Q ss_pred             CCceEEccC--CccHHHHHHhC-CC-------c-hH----HHHhhccCCCceEEecCCCCcc--cC--c--cceeeeehh
Q 042599          132 SVPHTKAQS--GMDAFAAAAKD-AR-------M-NN----LFNQSMHNHTVVEHVSGHMFIE--VP--N--GQALFMKWI  190 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~-P~-------l-~~----v~~~~~~~~~rv~~~~gDff~~--~P--~--~d~y~l~~I  190 (214)
                      ...++|+|.  |..+..+++.. |.       + +.    ..+.+... .+++++.+|+.++  +|  .  -|++++...
T Consensus        78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~  156 (233)
T 2ipx_A           78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADVA  156 (233)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred             CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence            356899996  55555666654 42       1 11    22323222 7899999999873  33  2  388887322


Q ss_pred             ccCCChHHHHHHHHHhHHhcCCC
Q 042599          191 LSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                          ..+....+++++.+.|+||
T Consensus       157 ----~~~~~~~~~~~~~~~Lkpg  175 (233)
T 2ipx_A          157 ----QPDQTRIVALNAHTFLRNG  175 (233)
T ss_dssp             ----CTTHHHHHHHHHHHHEEEE
T ss_pred             ----CccHHHHHHHHHHHHcCCC
Confidence                4556677899999999986

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=89.10  E-value=0.13  Score=34.51  Aligned_cols=40  Identities=10%  Similarity=0.060  Sum_probs=34.7

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRY   69 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~   69 (214)
                      ||+.+|++...+.|.|+.|...|++.+.          .+.|.+|+.++.
T Consensus        49 La~~l~is~~tv~~~L~~L~~~Glv~~~----------~g~y~l~~~g~~   88 (96)
T 1y0u_A           49 IMQTLSLSKKQLDYHLKVLEAGFCIERV----------GERWVVTDAGKI   88 (96)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECTTTCC
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEEE----------CCEEEECCCchH
Confidence            8889999999999999999999999986          258888887553

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=89.09  E-value=0.79  Score=37.85  Aligned_cols=82  Identities=12%  Similarity=0.088  Sum_probs=49.7

Q ss_pred             CCceEEccC--CccHHHHHHhCC-C-----chHHHHhhcc------CCCceEEecCCCCc-ccC-c-cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-R-----MNNLFNQSMH------NHTVVEHVSGHMFI-EVP-N-GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~-----l~~v~~~~~~------~~~rv~~~~gDff~-~~P-~-~d~y~l~~ILHdw  194 (214)
                      ...++|+|.  |..+..+++... .     ....++.+..      ..++|+++.+|+.+ +.| . .|+++...+.|..
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l  118 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL  118 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTB
T ss_pred             CCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhc
Confidence            357899997  444444444321 1     1122322221      23579999999986 466 3 4999977554443


Q ss_pred             C-hHHHHHHHHHhHHhcCCC
Q 042599          195 D-DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~-d~~~~~IL~~~~~Al~pg  213 (214)
                      . .+....+|+.+.+.|+||
T Consensus       119 ~~~~~~~~~l~~~~~~Lkpg  138 (328)
T 1g6q_1          119 LYESMMDTVLYARDHYLVEG  138 (328)
T ss_dssp             STTCCHHHHHHHHHHHEEEE
T ss_pred             ccHHHHHHHHHHHHhhcCCC
Confidence            2 233457889999999886

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=88.90  E-value=0.99  Score=33.73  Aligned_cols=82  Identities=12%  Similarity=-0.013  Sum_probs=51.9

Q ss_pred             CCceEEccC--CccHHHHHHhC-CCc--------hHHHHhhccC------CCceEEecCCCCcc--cC-c-cceeeeehh
Q 042599          132 SVPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSMHN------HTVVEHVSGHMFIE--VP-N-GQALFMKWI  190 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~~~------~~rv~~~~gDff~~--~P-~-~d~y~l~~I  190 (214)
                      ...++|+|.  |..+..+++.. |..        +..++.+...      .++++++.+|+.+.  .+ . -|++++...
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  102 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG  102 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence            357899996  55555666653 431        2333333221      36899999998752  33 3 388887754


Q ss_pred             cc-------CCChHHHHHHHHHhHHhcCCC
Q 042599          191 LS-------DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LH-------dw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +.       ....++..++|+++.+.|+||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g  132 (197)
T 3eey_A          103 YLPSGDHSISTRPETTIQALSKAMELLVTG  132 (197)
T ss_dssp             BCTTSCTTCBCCHHHHHHHHHHHHHHEEEE
T ss_pred             cccCcccccccCcccHHHHHHHHHHhCcCC
Confidence            41       223446677999999999886

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=88.85  E-value=0.97  Score=37.18  Aligned_cols=76  Identities=12%  Similarity=0.042  Sum_probs=49.6

Q ss_pred             CCceEEccCCc--cHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc--cceeeeehhccCC
Q 042599          132 SVPHTKAQSGM--DAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN--GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgGG~--~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw  194 (214)
                      ...++|+|.|.  ....++.+.|..        +..++.+..     ..++|+++.+|..+ +|.  -|++++...    
T Consensus       123 g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~----  197 (298)
T 3fpf_A          123 GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAAL----  197 (298)
T ss_dssp             TCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTT----
T ss_pred             cCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCC----
Confidence            35689999643  222333444432        334444332     12789999999987 453  399988654    


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                       -++-.++++++++.|+||
T Consensus       198 -~~d~~~~l~el~r~LkPG  215 (298)
T 3fpf_A          198 -AEPKRRVFRNIHRYVDTE  215 (298)
T ss_dssp             -CSCHHHHHHHHHHHCCTT
T ss_pred             -ccCHHHHHHHHHHHcCCC
Confidence             245568999999999998

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=88.82  E-value=0.49  Score=37.70  Aligned_cols=81  Identities=10%  Similarity=0.119  Sum_probs=49.5

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---C------CCceEEecCCCCcc--------cCc--cc
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---N------HTVVEHVSGHMFIE--------VPN--GQ  183 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---~------~~rv~~~~gDff~~--------~P~--~d  183 (214)
                      ..++|+|.  |.....++++.|..        +..++.+..   .      .++|+++.+|+.+.        +|.  -|
T Consensus        38 ~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD  117 (260)
T 2ozv_A           38 CRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFH  117 (260)
T ss_dssp             EEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEE
T ss_pred             CEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCcC
Confidence            46899996  55566777887753        233333321   1      23799999999864        343  38


Q ss_pred             eeeee----------------hhccCCChHHHHHHHHHhHHhcCCC
Q 042599          184 ALFMK----------------WILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       184 ~y~l~----------------~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +++..                .+-+.........+|+.+.+.|+||
T Consensus       118 ~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg  163 (260)
T 2ozv_A          118 HVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSG  163 (260)
T ss_dssp             EEEECCCC---------------------CCHHHHHHHHHHHEEEE
T ss_pred             EEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCC
Confidence            88874                2222233344678899999999875

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=88.67  E-value=0.29  Score=39.25  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=49.6

Q ss_pred             CceEEccC--CccHHHHHHh-CCCc--------hHHHHhhcc-----C-CCceEEecCCCCcccCc--cceeeeehhccC
Q 042599          133 VPHTKAQS--GMDAFAAAAK-DARM--------NNLFNQSMH-----N-HTVVEHVSGHMFIEVPN--GQALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~-~P~l--------~~v~~~~~~-----~-~~rv~~~~gDff~~~P~--~d~y~l~~ILHd  193 (214)
                      ..++|+|.  |..+..+++. .|..        +..++.+..     . .++++++.+|+.+.+|.  .|++++     |
T Consensus       114 ~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~-----~  188 (277)
T 1o54_A          114 DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFL-----D  188 (277)
T ss_dssp             CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEE-----C
T ss_pred             CEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEE-----C
Confidence            46899996  5556667776 5532        233333322     1 25899999999987774  488887     4


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      +++.  ..+|+++.+.|+||
T Consensus       189 ~~~~--~~~l~~~~~~L~pg  206 (277)
T 1o54_A          189 VPDP--WNYIDKCWEALKGG  206 (277)
T ss_dssp             CSCG--GGTHHHHHHHEEEE
T ss_pred             CcCH--HHHHHHHHHHcCCC
Confidence            4433  47889999999876

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=88.46  E-value=0.28  Score=40.12  Aligned_cols=80  Identities=9%  Similarity=-0.052  Sum_probs=47.9

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCcccC---c-cceeeeeh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIEVP---N-GQALFMKW  189 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~~P---~-~d~y~l~~  189 (214)
                      ..++|+|+  |..+.++++..|..        +.+++.+..         ..++++++.+|.++.++   . -|++++.-
T Consensus        92 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~  171 (296)
T 1inl_A           92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDS  171 (296)
T ss_dssp             CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC
T ss_pred             CEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcC
Confidence            56899997  55556666654532        334433321         14789999999876432   2 38888642


Q ss_pred             hccCCC-hH---HHHHHHHHhHHhcCCC
Q 042599          190 ILSDWD-DE---ECLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~-d~---~~~~IL~~~~~Al~pg  213 (214)
                      .-+ |. ..   ....+++++++.|+||
T Consensus       172 ~~~-~~~~~~~l~~~~~l~~~~~~Lkpg  198 (296)
T 1inl_A          172 TDP-TAGQGGHLFTEEFYQACYDALKED  198 (296)
T ss_dssp             -----------CCSHHHHHHHHHHEEEE
T ss_pred             CCc-ccCchhhhhHHHHHHHHHHhcCCC
Confidence            211 11 00   2368999999999886

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=88.40  E-value=0.18  Score=41.80  Aligned_cols=81  Identities=6%  Similarity=-0.077  Sum_probs=47.9

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCccc--Cc--cceeeee
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIEV--PN--GQALFMK  188 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~~--P~--~d~y~l~  188 (214)
                      ...++|+|+  |..+.++++..|..        +.+++.+..         ..+||+++.+|.++.+  +.  -|++++.
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d  188 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD  188 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence            356899997  55566666665532        344444321         1468999999998633  22  3998874


Q ss_pred             hhccCCChHHH---HHHHHHhHHhcCCC
Q 042599          189 WILSDWDDEEC---LKILKNCCVQCNTG  213 (214)
Q Consensus       189 ~ILHdw~d~~~---~~IL~~~~~Al~pg  213 (214)
                      ..-| +.....   ..+++++++.|+||
T Consensus       189 ~~~~-~~~~~~l~t~~~l~~~~~~Lkpg  215 (314)
T 2b2c_A          189 SSDP-VGPAESLFGQSYYELLRDALKED  215 (314)
T ss_dssp             CC--------------HHHHHHHHEEEE
T ss_pred             CCCC-CCcchhhhHHHHHHHHHhhcCCC
Confidence            4322 322222   78999999999886

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=88.28  E-value=0.39  Score=37.75  Aligned_cols=44  Identities=7%  Similarity=0.174  Sum_probs=34.5

Q ss_pred             EecCCCCccc------Cc--cceeeeehhcc---CCC----hHHHHHHHHHhHHhcCCC
Q 042599          170 HVSGHMFIEV------PN--GQALFMKWILS---DWD----DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       170 ~~~gDff~~~------P~--~d~y~l~~ILH---dw~----d~~~~~IL~~~~~Al~pg  213 (214)
                      ++.+|++++.      +.  -|+++....++   +|.    .+...++|+++.+.|+||
T Consensus       149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  207 (250)
T 1o9g_A          149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  207 (250)
T ss_dssp             EEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             eeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence            9999999865      42  39998875544   344    488899999999999997

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=88.26  E-value=0.45  Score=38.48  Aligned_cols=81  Identities=7%  Similarity=-0.082  Sum_probs=50.0

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------------CCCceEEecCCCCccc--Cc-cc
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------------NHTVVEHVSGHMFIEV--PN-GQ  183 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------------~~~rv~~~~gDff~~~--P~-~d  183 (214)
                      ...++|+|+  |..+.++++. |..        +.+++.+..               ..++++++.+|.++-+  +. -|
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~fD  154 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD  154 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCee
Confidence            356899997  5555666666 642        334433221               2478999999986532  33 39


Q ss_pred             eeeeehhccCCChHH--HHHHHHHhHHhcCCC
Q 042599          184 ALFMKWILSDWDDEE--CLKILKNCCVQCNTG  213 (214)
Q Consensus       184 ~y~l~~ILHdw~d~~--~~~IL~~~~~Al~pg  213 (214)
                      ++++....|..+.+.  ...+++++++.|+||
T Consensus       155 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg  186 (281)
T 1mjf_A          155 VIIADSTDPVGPAKVLFSEEFYRYVYDALNNP  186 (281)
T ss_dssp             EEEEECCCCC-----TTSHHHHHHHHHHEEEE
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence            988765443322222  378899999999886

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=88.20  E-value=0.1  Score=41.96  Aligned_cols=43  Identities=16%  Similarity=0.157  Sum_probs=36.3

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      ||+++|++...+.|+|+.|+..|++++++.        .++|++++....|
T Consensus        27 ia~~lgl~ksT~~RlL~tL~~~G~v~~~~~--------~~~Y~lG~~~~~l   69 (260)
T 3r4k_A           27 LTRLSGMNKATVYRLMSELQEAGFVEQVEG--------ARSYRLGPQVLRL   69 (260)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHTTSEEECSS--------SSEEEECTTHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEEcCC--------CCcEEcCHHHHHH
Confidence            889999999999999999999999998721        4789998765443

>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A

Probab=88.13  E-value=0.2  Score=39.79  Aligned_cols=43  Identities=7%  Similarity=0.007  Sum_probs=36.5

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      ||+.+|++...+.|+|+.|...|++++++.        .++|++++....|
T Consensus        27 la~~~gl~~stv~r~l~~L~~~G~v~~~~~--------~~~Y~lg~~~~~l   69 (241)
T 2xrn_A           27 IAQLVGLPRSTVQRIINALEEEFLVEALGP--------AGGFRLGPALGQL   69 (241)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHTTTSEEECGG--------GCEEEECSHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEEeCC--------CCeEEECHHHHHH
Confidence            899999999999999999999999998621        4789998865444

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=87.90  E-value=0.7  Score=34.79  Aligned_cols=77  Identities=9%  Similarity=0.018  Sum_probs=47.1

Q ss_pred             CceEEccC--CccHHHHHHhCCC-c------hHHHHhhccCCCceEEecCCCCcccCc-cceeeeehhccCCChHHHHHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMHNHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDDEECLKI  202 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d~~~~~I  202 (214)
                      ..++|+|.  |..+..+...... +      +..++.+.....+++++.+|+++ +|. -|++++.-.+|.+++....++
T Consensus        53 ~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~~~~~~  131 (200)
T 1ne2_A           53 RSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKHSDRAF  131 (200)
T ss_dssp             SEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-------CHHH
T ss_pred             CEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCchhHHH
Confidence            46899996  5444555554221 2      33444444333389999999987 464 499999999999987666778


Q ss_pred             HHHhHHhc
Q 042599          203 LKNCCVQC  210 (214)
Q Consensus       203 L~~~~~Al  210 (214)
                      |+.+.+.+
T Consensus       132 l~~~~~~~  139 (200)
T 1ne2_A          132 IDKAFETS  139 (200)
T ss_dssp             HHHHHHHE
T ss_pred             HHHHHHhc
Confidence            88887765

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=87.81  E-value=1.1  Score=34.15  Aligned_cols=74  Identities=9%  Similarity=-0.024  Sum_probs=47.6

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCC-ceEEecCCCCcccC---ccceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHT-VVEHVSGHMFIEVP---NGQALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~-rv~~~~gDff~~~P---~~d~y~l~~ILHdw~  195 (214)
                      ..++|+|.  |..+..+++..-.+      +..++.+..     ..+ +|+++.+|+.+.++   +-|++++...+    
T Consensus        57 ~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~----  132 (204)
T 3njr_A           57 ELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG----  132 (204)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC----
T ss_pred             CEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc----
Confidence            56899996  55555666652221      233333221     123 89999999998544   34998876544    


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      +  .. +|+++.+.|+||
T Consensus       133 ~--~~-~l~~~~~~Lkpg  147 (204)
T 3njr_A          133 S--QA-LYDRLWEWLAPG  147 (204)
T ss_dssp             C--HH-HHHHHHHHSCTT
T ss_pred             c--HH-HHHHHHHhcCCC
Confidence            1  22 899999999997

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=87.80  E-value=0.068  Score=41.84  Aligned_cols=81  Identities=10%  Similarity=0.035  Sum_probs=51.5

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----C-CCceEEecCCCCcccCc--cceeeeehhccCC
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----N-HTVVEHVSGHMFIEVPN--GQALFMKWILSDW  194 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~-~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw  194 (214)
                      ....++|+|.  |..+..+++..-.+      +..++.+..     . .++++++.+|+.+..|.  -|++++...+|..
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  157 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGP  157 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSSG
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCCc
Confidence            3467999996  55556666654322      233333321     1 15899999999875453  3999999888876


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++...  .+.++++.|+||
T Consensus       158 ~~~~~--~~~~~~~~L~pg  174 (241)
T 3gdh_A          158 DYATA--ETFDIRTMMSPD  174 (241)
T ss_dssp             GGGGS--SSBCTTTSCSSC
T ss_pred             chhhh--HHHHHHhhcCCc
Confidence            65542  455666666665

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=87.79  E-value=0.72  Score=34.92  Aligned_cols=74  Identities=12%  Similarity=0.026  Sum_probs=48.2

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCcccC-c--cceeeeehhccCCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFIEVP-N--GQALFMKWILSDWD  195 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~~~P-~--~d~y~l~~ILHdw~  195 (214)
                      ...++|+|.  |..+..+++....+      +..++.+..     ..++++++.+|.++..+ .  -|++++...+|..+
T Consensus        78 ~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~  157 (210)
T 3lbf_A           78 QSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIP  157 (210)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSSCC
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchhhhh
Confidence            356899996  55555666553322      233333321     23579999999997544 2  39999999999988


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      +        ++.+.|+||
T Consensus       158 ~--------~~~~~L~pg  167 (210)
T 3lbf_A          158 T--------ALMTQLDEG  167 (210)
T ss_dssp             T--------HHHHTEEEE
T ss_pred             H--------HHHHhcccC
Confidence            6        355566654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=87.74  E-value=0.42  Score=36.83  Aligned_cols=73  Identities=8%  Similarity=-0.012  Sum_probs=46.8

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc---CCCceEEecCCCCcccC-c--cceeeeehhccCCChHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH---NHTVVEHVSGHMFIEVP-N--GQALFMKWILSDWDDEE  198 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~---~~~rv~~~~gDff~~~P-~--~d~y~l~~ILHdw~d~~  198 (214)
                      ..++|+|.  |..+..+++...++      +..++.+..   ...+++++.+|+.+..| .  -|+++...++|..++  
T Consensus        72 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~--  149 (231)
T 1vbf_A           72 QKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLC--  149 (231)
T ss_dssp             CEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCH--
T ss_pred             CEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHHHHH--
Confidence            56899996  55555566554322      233333322   12289999999987554 2  399999999998875  


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                            ++.+.|+||
T Consensus       150 ------~~~~~L~pg  158 (231)
T 1vbf_A          150 ------KPYEQLKEG  158 (231)
T ss_dssp             ------HHHHTEEEE
T ss_pred             ------HHHHHcCCC
Confidence                  355566654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=87.71  E-value=1.2  Score=37.85  Aligned_cols=81  Identities=6%  Similarity=-0.079  Sum_probs=57.0

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCcccCc---cceeeeehhccC---C
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFIEVPN---GQALFMKWILSD---W  194 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~~~P~---~d~y~l~~ILHd---w  194 (214)
                      ..++|+|.  |..+..+++...++      +..++.+..    ..-.++++.+|+++..+.   -|++++.-.+|.   -
T Consensus       235 ~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~  314 (381)
T 3dmg_A          235 RQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAV  314 (381)
T ss_dssp             CEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSS
T ss_pred             CEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcccc
Confidence            46899996  66677777664432      223333321    222489999999975442   399999888886   4


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..+....+|+++.+.|+||
T Consensus       315 ~~~~~~~~l~~~~~~LkpG  333 (381)
T 3dmg_A          315 ILDVAQAFVNVAAARLRPG  333 (381)
T ss_dssp             CCHHHHHHHHHHHHHEEEE
T ss_pred             cHHHHHHHHHHHHHhcCcC
Confidence            4678889999999999886

>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48

Probab=87.64  E-value=0.38  Score=32.19  Aligned_cols=45  Identities=9%  Similarity=0.076  Sum_probs=36.3

Q ss_pred             CCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599           21 PKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF   71 (214)
Q Consensus        21 A~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~   71 (214)
                      |+.++++...+.|+++.|...|++++....      ....|.+|+.++.+.
T Consensus        33 a~~l~is~~tvs~~l~~Le~~gli~r~~~~------r~~~~~LT~~G~~~~   77 (99)
T 1tbx_A           33 NAEFPMSTATFYDAKKFLIQEGFVKERQER------GEKRLYLTEKGKLFA   77 (99)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHTTSEEEEEET------TEEEEEECHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHCCCEEEEecC------CceEEEECHHHHHHH
Confidence            999999999999999999999999875310      145677888777665

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=87.57  E-value=0.39  Score=39.54  Aligned_cols=82  Identities=6%  Similarity=-0.041  Sum_probs=52.7

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc----------CCCceEEecCCCCccc--Cc--cceeee
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH----------NHTVVEHVSGHMFIEV--PN--GQALFM  187 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~----------~~~rv~~~~gDff~~~--P~--~d~y~l  187 (214)
                      ...++|+|+  |..+.++++..|..        +.+++.+..          ..++++++.+|.++.+  +.  -|++++
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII  157 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence            356899997  55566666655532        334443321          1478999999998633  22  399998


Q ss_pred             ehhccCC--C-hHH--HHHHHHHhHHhcCCC
Q 042599          188 KWILSDW--D-DEE--CLKILKNCCVQCNTG  213 (214)
Q Consensus       188 ~~ILHdw--~-d~~--~~~IL~~~~~Al~pg  213 (214)
                      ....|.+  . .+.  ...+++++++.|+||
T Consensus       158 d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkpg  188 (314)
T 1uir_A          158 DLTDPVGEDNPARLLYTVEFYRLVKAHLNPG  188 (314)
T ss_dssp             ECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE
T ss_pred             CCCCcccccCcchhccHHHHHHHHHHhcCCC
Confidence            7655441  1 111  478899999999886

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=87.57  E-value=0.29  Score=40.60  Aligned_cols=80  Identities=8%  Similarity=-0.090  Sum_probs=50.5

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---C------CCceEEecCCCCccc---Cc-cceeeeeh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---N------HTVVEHVSGHMFIEV---PN-GQALFMKW  189 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---~------~~rv~~~~gDff~~~---P~-~d~y~l~~  189 (214)
                      ..++|+|+  |..+.++++..|..        +.+++.+..   .      .++++++.+|.++.+   +. -|+++...
T Consensus       118 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~  197 (321)
T 2pt6_A          118 KNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDS  197 (321)
T ss_dssp             CEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEEC
T ss_pred             CEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECC
Confidence            46899997  55556666654532        344443321   1      468999999988643   22 39988753


Q ss_pred             hccCCC-hHH--HHHHHHHhHHhcCCC
Q 042599          190 ILSDWD-DEE--CLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~-d~~--~~~IL~~~~~Al~pg  213 (214)
                      . +.|. .+.  ...+++++++.|+||
T Consensus       198 ~-~p~~~~~~l~~~~~l~~~~~~Lkpg  223 (321)
T 2pt6_A          198 S-DPIGPAETLFNQNFYEKIYNALKPN  223 (321)
T ss_dssp             C-CSSSGGGGGSSHHHHHHHHHHEEEE
T ss_pred             c-CCCCcchhhhHHHHHHHHHHhcCCC
Confidence            2 2232 222  278999999999886

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=87.56  E-value=1.1  Score=35.75  Aligned_cols=77  Identities=8%  Similarity=0.013  Sum_probs=51.5

Q ss_pred             CceEEccCCc--cHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc---cceeeeehhccC
Q 042599          133 VPHTKAQSGM--DAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN---GQALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgGG~--~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~---~d~y~l~~ILHd  193 (214)
                      ..++|+|.|+  .+..+++..|..        +..++.+..      ..++|++..+|.++.++.   .|++++..+   
T Consensus        23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm---   99 (244)
T 3gnl_A           23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM---   99 (244)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE---
T ss_pred             CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC---
Confidence            5799999644  455566666642        233433332      246899999999987663   488887644   


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                       .-+-...||....+.++++
T Consensus       100 -Gg~lI~~IL~~~~~~L~~~  118 (244)
T 3gnl_A          100 -GGTLIRTILEEGAAKLAGV  118 (244)
T ss_dssp             -CHHHHHHHHHHTGGGGTTC
T ss_pred             -chHHHHHHHHHHHHHhCCC
Confidence             3466778888888777654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=87.55  E-value=0.76  Score=35.67  Aligned_cols=74  Identities=11%  Similarity=0.048  Sum_probs=48.5

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc-----CCCceEEecCCCCcccCc-c--ceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN-G--QALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~-----~~~rv~~~~gDff~~~P~-~--d~y~l~~ILHdw  194 (214)
                      ...++|+|+  |..+..+++..| .+      +..++.+..     ..++++++.+|+..++|. +  |++++..++|.+
T Consensus        92 ~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~  171 (235)
T 1jg1_A           92 GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKI  171 (235)
T ss_dssp             TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSC
T ss_pred             CCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCccEEEECCcHHHH
Confidence            356899996  555666666654 21      233333322     234699999999766663 3  999999999988


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++        ++.+.|+||
T Consensus       172 ~~--------~~~~~L~pg  182 (235)
T 1jg1_A          172 PE--------PLIEQLKIG  182 (235)
T ss_dssp             CH--------HHHHTEEEE
T ss_pred             HH--------HHHHhcCCC
Confidence            75        445566654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=87.45  E-value=0.17  Score=36.94  Aligned_cols=80  Identities=14%  Similarity=-0.005  Sum_probs=48.4

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccC----CCceEEecCCCCcccC-------ccceeeeehhcc
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHN----HTVVEHVSGHMFIEVP-------NGQALFMKWILS  192 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~----~~rv~~~~gDff~~~P-------~~d~y~l~~ILH  192 (214)
                      ...++|+|.  |..+..+++..+.+      +..++.+...    .-+++++.+|+.+..|       +-|++++...+|
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~  121 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA  121 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred             CCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence            356899996  66666777776643      2333333221    1179999999986433       249999987777


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                       -..++..+.+.+ .+.|+||
T Consensus       122 -~~~~~~~~~~~~-~~~L~~g  140 (171)
T 1ws6_A          122 -MDLAALFGELLA-SGLVEAG  140 (171)
T ss_dssp             -SCTTHHHHHHHH-HTCEEEE
T ss_pred             -hhHHHHHHHHHh-hcccCCC
Confidence             333333333333 4777765

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=87.44  E-value=0.55  Score=39.90  Aligned_cols=76  Identities=8%  Similarity=0.059  Sum_probs=50.1

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-----ccC--c--cceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-----EVP--N--GQALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-----~~P--~--~d~y~l~~ILHdw~  195 (214)
                      ..++|+|.  |..+..+.++..+.      +..++.+...  .+.... ++|.     .+|  .  -|+++..++||.++
T Consensus       109 ~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~--~~~~~~-~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~  185 (416)
T 4e2x_A          109 PFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK--GIRVRT-DFFEKATADDVRRTEGPANVIYAANTLCHIP  185 (416)
T ss_dssp             CEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT--TCCEEC-SCCSHHHHHHHHHHHCCEEEEEEESCGGGCT
T ss_pred             CEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc--CCCcce-eeechhhHhhcccCCCCEEEEEECChHHhcC
Confidence            46899996  77777777664432      2344444432  233322 2331     223  2  49999999999998


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      |  -..+|+++++.|+||
T Consensus       186 d--~~~~l~~~~r~Lkpg  201 (416)
T 4e2x_A          186 Y--VQSVLEGVDALLAPD  201 (416)
T ss_dssp             T--HHHHHHHHHHHEEEE
T ss_pred             C--HHHHHHHHHHHcCCC
Confidence            4  678999999999986

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28

Probab=87.24  E-value=0.33  Score=32.28  Aligned_cols=61  Identities=16%  Similarity=0.268  Sum_probs=43.4

Q ss_pred             HHHHHHHhCchhHH----------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccc
Q 042599            6 TMKTAIQLGVLEIM----------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRY   69 (214)
Q Consensus         6 ~L~~a~~lgifd~L----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~   69 (214)
                      ++..-.++.|+..|          ||+.+|++...+.|.|+.|...|+++.....  .++ ....|.+|+.+..
T Consensus        12 ~l~~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~--~~~-r~~~~~lt~~g~~   82 (100)
T 1ub9_A           12 ILGNPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI--ADR-PRTVVEITDFGME   82 (100)
T ss_dssp             HHHSHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC--SSS-CEEEEEECHHHHH
T ss_pred             ccCChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC--CCc-ceEEEEECHHHHH
Confidence            44555666677666          8999999999999999999999999864210  011 1345777776643

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=87.17  E-value=0.23  Score=36.78  Aligned_cols=45  Identities=7%  Similarity=-0.103  Sum_probs=36.8

Q ss_pred             ceEEecCCCCc-cc---Cc--cceeeeehhccCC-ChHHHHHHHHHhHHhcCCC
Q 042599          167 VVEHVSGHMFI-EV---PN--GQALFMKWILSDW-DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       167 rv~~~~gDff~-~~---P~--~d~y~l~~ILHdw-~d~~~~~IL~~~~~Al~pg  213 (214)
                      +++++.+|+.+ +.   |.  -|+++...+||.. +|.  .++|+++++.|+||
T Consensus        43 ~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~--~~~l~~~~r~Lkpg   94 (176)
T 2ld4_A           43 EGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHS--AEILAEIARILRPG   94 (176)
T ss_dssp             TSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCC--HHHHHHHHHHEEEE
T ss_pred             CcEEEEechhcCccccCCCCCEeEEEECChhhhcccCH--HHHHHHHHHHCCCC
Confidence            48999999875 33   53  3999999999988 554  78999999999987

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=86.75  E-value=0.29  Score=39.85  Aligned_cols=81  Identities=6%  Similarity=0.006  Sum_probs=57.4

Q ss_pred             CCceEEccCCcc--HHHHHHhCCCc--------hH---HHHhhc-cCCCceEEecCCCCcccCc--cceeeeehhccCCC
Q 042599          132 SVPHTKAQSGMD--AFAAAAKDARM--------NN---LFNQSM-HNHTVVEHVSGHMFIEVPN--GQALFMKWILSDWD  195 (214)
Q Consensus       132 ~~~~~dvgGG~~--~~~~~~~~P~l--------~~---v~~~~~-~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~  195 (214)
                      ...++|+|.|.+  +..++...|..        +.   +.+... ....+.++...|+..+.|+  +|+.++--++|.-.
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~Le  212 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPCLE  212 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHHHH
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHHhh
Confidence            456999997544  44455556653        12   222221 2245588999999976563  69999999999999


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      +++-..++ ++.++|.|+
T Consensus       213 ~q~kg~g~-~ll~aL~~~  229 (281)
T 3lcv_B          213 TQQRGSGW-EVIDIVNSP  229 (281)
T ss_dssp             HHSTTHHH-HHHHHSSCS
T ss_pred             hhhhHHHH-HHHHHhCCC
Confidence            99888888 899999876

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=86.75  E-value=0.23  Score=37.90  Aligned_cols=78  Identities=13%  Similarity=-0.010  Sum_probs=51.0

Q ss_pred             CCCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCcccCc---cceeeeehh
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN---GQALFMKWI  190 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~---~d~y~l~~I  190 (214)
                      ....++|+|.  |..+..+++..| ..        +..++.+..      ..++|+++.+|.++..|.   -|++++.  
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~--  133 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMD--  133 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEE--
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEc--
Confidence            3457899996  666667777766 21        223332221      135799999999875442   2666554  


Q ss_pred             ccCCChHHHHHHHHHhHHhcCCC
Q 042599          191 LSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                         .+.+....+|+++.+.|+||
T Consensus       134 ---~~~~~~~~~l~~~~~~Lkpg  153 (210)
T 3c3p_A          134 ---CDVFNGADVLERMNRCLAKN  153 (210)
T ss_dssp             ---TTTSCHHHHHHHHGGGEEEE
T ss_pred             ---CChhhhHHHHHHHHHhcCCC
Confidence               44556678999999999886

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=86.56  E-value=1.4  Score=34.72  Aligned_cols=78  Identities=6%  Similarity=-0.075  Sum_probs=51.8

Q ss_pred             CCceEEccCCcc--HHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc---cceeeeehhcc
Q 042599          132 SVPHTKAQSGMD--AFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN---GQALFMKWILS  192 (214)
Q Consensus       132 ~~~~~dvgGG~~--~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~---~d~y~l~~ILH  192 (214)
                      ...++|+|-|+.  +..+++..|.-        +..++.+..      ..++|++..||.++.++.   .|++++..+. 
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG-  100 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG-  100 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC-
T ss_pred             CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc-
Confidence            357999997554  45556666642        233333322      246899999999987663   4998877553 


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                         -+-...||....+.++++
T Consensus       101 ---g~lI~~IL~~~~~~l~~~  118 (230)
T 3lec_A          101 ---GRLIADILNNDIDKLQHV  118 (230)
T ss_dssp             ---HHHHHHHHHHTGGGGTTC
T ss_pred             ---hHHHHHHHHHHHHHhCcC
Confidence               466777888887777654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=86.55  E-value=0.23  Score=37.93  Aligned_cols=44  Identities=9%  Similarity=-0.058  Sum_probs=36.0

Q ss_pred             ceEEecCCCCc-ccCc--cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          167 VVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       167 rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +++++.+|+.+ +.|.  -|+++...+|| |  ++...+|+++++.|+||
T Consensus        98 ~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~--~~~~~~l~~~~~~L~~g  144 (215)
T 2zfu_A           98 DPRVTVCDMAQVPLEDESVDVAVFCLSLM-G--TNIRDFLEEANRVLKPG  144 (215)
T ss_dssp             STTEEESCTTSCSCCTTCEEEEEEESCCC-S--SCHHHHHHHHHHHEEEE
T ss_pred             CceEEEeccccCCCCCCCEeEEEEehhcc-c--cCHHHHHHHHHHhCCCC
Confidence            67888999986 4554  39999999999 5  45678999999999886

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=86.33  E-value=0.59  Score=32.55  Aligned_cols=43  Identities=12%  Similarity=0.158  Sum_probs=35.7

Q ss_pred             HHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599            5 MTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCN   47 (214)
Q Consensus         5 ~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~   47 (214)
                      .+|.--.++.|...|         ||+.+|++...+.+-|+.|...|++...
T Consensus        13 ~al~~~~R~~Il~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~   64 (118)
T 3f6o_A           13 QALADPTRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTH   64 (118)
T ss_dssp             HHHTSHHHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHhCCHHHHHHHHHHHhCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence            344445566677777         9999999999999999999999999876

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=86.24  E-value=2  Score=32.85  Aligned_cols=76  Identities=7%  Similarity=-0.073  Sum_probs=47.3

Q ss_pred             CceEEccC--CccHHHHHHhCCC-------c-hH----HHHhhccCCCceEEecCCCCcc-----cCc-cceeeeehhcc
Q 042599          133 VPHTKAQS--GMDAFAAAAKDAR-------M-NN----LFNQSMHNHTVVEHVSGHMFIE-----VPN-GQALFMKWILS  192 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~-------l-~~----v~~~~~~~~~rv~~~~gDff~~-----~P~-~d~y~l~~ILH  192 (214)
                      ..++|+|.  |..+..+++..|.       + +.    ..+.+.. ..+++++.+|..++     .+. -|+++.. +.+
T Consensus        59 ~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~-~~~  136 (210)
T 1nt2_A           59 ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWKYSGIVEKVDLIYQD-IAQ  136 (210)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGGTTTTCCCEEEEEEC-CCS
T ss_pred             CEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-CCCeEEEEcCCCCchhhcccccceeEEEEe-ccC
Confidence            56899996  5555566665542       1 12    2222222 35788899998764     232 3888765 332


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                         .++...+|+++++.|+||
T Consensus       137 ---~~~~~~~l~~~~r~Lkpg  154 (210)
T 1nt2_A          137 ---KNQIEILKANAEFFLKEK  154 (210)
T ss_dssp             ---TTHHHHHHHHHHHHEEEE
T ss_pred             ---hhHHHHHHHHHHHHhCCC
Confidence               244556699999999986

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=86.13  E-value=2.1  Score=32.69  Aligned_cols=77  Identities=9%  Similarity=0.023  Sum_probs=47.2

Q ss_pred             CceEEccC--CccHHHHHHhC-CCc--------hHHHHhh---ccCCCceEEecCCCCcc-----cCc-cceeeeehhcc
Q 042599          133 VPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQS---MHNHTVVEHVSGHMFIE-----VPN-GQALFMKWILS  192 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~---~~~~~rv~~~~gDff~~-----~P~-~d~y~l~~ILH  192 (214)
                      ..++|+|.  |..+..+++.. |.-        +..++.+   ....++++++.+|+.++     .+. -|++++...  
T Consensus        75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~--  152 (227)
T 1g8a_A           75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA--  152 (227)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC--
T ss_pred             CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC--
Confidence            46899996  66566666653 321        2222222   11236899999999873     222 388774322  


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                        ..+....+|+++.+.|+||
T Consensus       153 --~~~~~~~~l~~~~~~Lkpg  171 (227)
T 1g8a_A          153 --QPTQAKILIDNAEVYLKRG  171 (227)
T ss_dssp             --STTHHHHHHHHHHHHEEEE
T ss_pred             --CHhHHHHHHHHHHHhcCCC
Confidence              3344455699999999986

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=86.13  E-value=0.29  Score=37.66  Aligned_cols=77  Identities=8%  Similarity=-0.060  Sum_probs=51.0

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCcccC--------c-ccee
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP--------N-GQAL  185 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P--------~-~d~y  185 (214)
                      ...++|+|.  |..+..+++..| ..        +..++.+..      ..++|+++.+|..+..|        . -|++
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            357899996  666677777766 22        223332221      23579999999876433        2 2777


Q ss_pred             eeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          186 FMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       186 ~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++     |.+.+....+|+++.+.|+||
T Consensus       145 ~~-----~~~~~~~~~~l~~~~~~L~pg  167 (225)
T 3tr6_A          145 YI-----DADKANTDLYYEESLKLLREG  167 (225)
T ss_dssp             EE-----CSCGGGHHHHHHHHHHHEEEE
T ss_pred             EE-----CCCHHHHHHHHHHHHHhcCCC
Confidence            74     334566778999999999886

>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}

Probab=86.11  E-value=0.17  Score=40.51  Aligned_cols=42  Identities=12%  Similarity=0.099  Sum_probs=36.8

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF   71 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~   71 (214)
                      ||+.+|++...+.|+|+.|+..|+++++          ++.|++++....|.
T Consensus        35 ia~~~gl~~stv~r~l~~L~~~G~v~~~----------~~~Y~Lg~~~~~l~   76 (257)
T 2g7u_A           35 LATEAGLSRPAVRRILLTLQKLGYVAGS----------GGRWSLTPRVLSIG   76 (257)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECGGGHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEeC----------CCEEEEcHHHHHHH
Confidence            8889999999999999999999999986          57899988765443

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=85.99  E-value=0.94  Score=36.64  Aligned_cols=72  Identities=10%  Similarity=0.077  Sum_probs=48.1

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc---C---CCceEEecCCCCc-ccCccceeeeehhccCCChH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH---N---HTVVEHVSGHMFI-EVPNGQALFMKWILSDWDDE  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~---~---~~rv~~~~gDff~-~~P~~d~y~l~~ILHdw~d~  197 (214)
                      ..++|+|.  |.....+++....+      +..++.+..   .   .++++++.+|+.+ +.|.-|+++. +...+|+.+
T Consensus        30 ~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD~vv~-nlpy~~~~~  108 (285)
T 1zq9_A           30 DVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVA-NLPYQISSP  108 (285)
T ss_dssp             CEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEE-ECCGGGHHH
T ss_pred             CEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhcEEEE-ecCcccchH
Confidence            56899996  77777777765533      223332221   1   2589999999986 5665576554 777788888


Q ss_pred             HHHHHHHH
Q 042599          198 ECLKILKN  205 (214)
Q Consensus       198 ~~~~IL~~  205 (214)
                      ...++|.+
T Consensus       109 ~~~~~l~~  116 (285)
T 1zq9_A          109 FVFKLLLH  116 (285)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            88888764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=85.59  E-value=0.72  Score=35.46  Aligned_cols=80  Identities=11%  Similarity=0.042  Sum_probs=50.8

Q ss_pred             CCCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCcc---cC-----c-cce
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFIE---VP-----N-GQA  184 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~~---~P-----~-~d~  184 (214)
                      ....++|+|.  |..+..+++..| ..        +..++.+..      ..++|+++.+|..+.   .+     . -|+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~  137 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  137 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence            3457899996  666666666544 21        223333221      235799999998652   32     2 399


Q ss_pred             eeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          185 LFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       185 y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +++....|.+.  ...++++.+ +.|+||
T Consensus       138 V~~d~~~~~~~--~~~~~~~~~-~~Lkpg  163 (221)
T 3u81_A          138 VFLDHWKDRYL--PDTLLLEKC-GLLRKG  163 (221)
T ss_dssp             EEECSCGGGHH--HHHHHHHHT-TCCCTT
T ss_pred             EEEcCCcccch--HHHHHHHhc-cccCCC
Confidence            99887776663  344677777 888887

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=85.56  E-value=0.55  Score=35.72  Aligned_cols=73  Identities=11%  Similarity=-0.006  Sum_probs=47.6

Q ss_pred             CceEEccC--CccHHHHHHhC-CCc--------hHHHHhhcc-----CCCceEEecCCCCcccC-c--cceeeeehhccC
Q 042599          133 VPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVP-N--GQALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P-~--~d~y~l~~ILHd  193 (214)
                      ..++|+|.  |..+..+++.. |..        +..++.+..     ..++++++.+|+.++.| .  -|+++...++|.
T Consensus        79 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~  158 (215)
T 2yxe_A           79 MKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPK  158 (215)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred             CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCchHH
Confidence            56899996  55566666654 321        233333321     23569999999987665 3  399999999998


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      .++        ++.+.|+||
T Consensus       159 ~~~--------~~~~~L~pg  170 (215)
T 2yxe_A          159 IPE--------PLIRQLKDG  170 (215)
T ss_dssp             CCH--------HHHHTEEEE
T ss_pred             HHH--------HHHHHcCCC
Confidence            874        555566654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=85.53  E-value=2.1  Score=34.61  Aligned_cols=79  Identities=9%  Similarity=0.049  Sum_probs=50.6

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccC-cc---ceeeee---
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP-NG---QALFMK---  188 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P-~~---d~y~l~---  188 (214)
                      ...++|+|.  |..+..++.. |..        +..++.+..      ...+|+++.+|++++.+ +-   |+++..   
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPPy  202 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY  202 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred             CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCCC
Confidence            357999996  5555667777 643        233333221      13479999999998765 34   877763   


Q ss_pred             ---------hhccCCChHH-------HHHHHHHhH-HhcCCC
Q 042599          189 ---------WILSDWDDEE-------CLKILKNCC-VQCNTG  213 (214)
Q Consensus       189 ---------~ILHdw~d~~-------~~~IL~~~~-~Al~pg  213 (214)
                               .|+  |....       ...+++++. +.++||
T Consensus       203 i~~~~~l~~~v~--~ep~~al~~~~dgl~~~~~i~~~~l~pg  242 (284)
T 1nv8_A          203 VKSSAHLPKDVL--FEPPEALFGGEDGLDFYREFFGRYDTSG  242 (284)
T ss_dssp             BCGGGSCTTSCC--CSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred             CCcccccChhhc--cCcHHHhcCCCcHHHHHHHHHHhcCCCC
Confidence                     344  33332       347899999 888886

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=85.53  E-value=1.4  Score=34.68  Aligned_cols=73  Identities=8%  Similarity=0.023  Sum_probs=49.7

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhccCCCceEEecCCCCc-ccCcc--ceeeeehhccCCChHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDEE  198 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~~  198 (214)
                      ...++|+|.  |..+..+++..|..        +..++.+.....+++++.+|+.+ +++.+  |+++...+.+      
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~------  159 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC------  159 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC------
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChh------
Confidence            356899995  77777788776532        33455554445678999999875 45543  9888755432      


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                         .|+++.+.|+||
T Consensus       160 ---~l~~~~~~L~pg  171 (269)
T 1p91_A          160 ---KAEELARVVKPG  171 (269)
T ss_dssp             ---CHHHHHHHEEEE
T ss_pred             ---hHHHHHHhcCCC
Confidence               478888888875

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=85.44  E-value=1.1  Score=33.20  Aligned_cols=82  Identities=11%  Similarity=0.037  Sum_probs=48.4

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCc--ccC-c-cceeeee-hhccC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFI--EVP-N-GQALFMK-WILSD  193 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~--~~P-~-~d~y~l~-~ILHd  193 (214)
                      ...++|+|.  |..+..+++..-.+      +..++.+..     ..++++++.+|+.+  +.+ . -|++++. ..+|.
T Consensus        23 ~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~  102 (185)
T 3mti_A           23 ESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPS  102 (185)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC----
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCC
Confidence            356899996  55556666652222      233333321     22689999877654  233 3 3888765 33332


Q ss_pred             ----C--ChHHHHHHHHHhHHhcCCC
Q 042599          194 ----W--DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 ----w--~d~~~~~IL~~~~~Al~pg  213 (214)
                          +  ..+....+|+++.+.|+||
T Consensus       103 ~~~~~~~~~~~~~~~l~~~~~~Lkpg  128 (185)
T 3mti_A          103 ADKSVITKPHTTLEAIEKILDRLEVG  128 (185)
T ss_dssp             -------CHHHHHHHHHHHHHHEEEE
T ss_pred             cchhcccChhhHHHHHHHHHHhcCCC
Confidence                0  3467778899999999986

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=85.44  E-value=2.4  Score=34.87  Aligned_cols=86  Identities=12%  Similarity=0.045  Sum_probs=60.7

Q ss_pred             HhcCCCceEEccCCccHHHHHHhCCC--------chHHHHhhc---c-----CCCceEEecCCCCcccC----------c
Q 042599          128 LLEGSVPHTKAQSGMDAFAAAAKDAR--------MNNLFNQSM---H-----NHTVVEHVSGHMFIEVP----------N  181 (214)
Q Consensus       128 ~~~g~~~~~dvgGG~~~~~~~~~~P~--------l~~v~~~~~---~-----~~~rv~~~~gDff~~~P----------~  181 (214)
                      +..|..++|++|.|.....+.-.+|+        +|.|+....   .     ..++..+++.|+.+.+.          .
T Consensus        99 ~~~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A           99 VIDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             HHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             HHhCCCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            34566789999987665544433453        255554321   1     35689999999986321          1


Q ss_pred             -cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          182 -GQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       182 -~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                       .-++++--|||-.+++++..||+.+.+.++||
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~g  211 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVG  211 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTT
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCC
Confidence             14778889999999999999999999988887

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=85.39  E-value=0.56  Score=36.75  Aligned_cols=78  Identities=8%  Similarity=0.095  Sum_probs=51.8

Q ss_pred             CCCceEEccC--CccHHHHHHhCCC-c--------hHHHHhhcc------CCCceEEecCCCCcccC---------c-cc
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDAR-M--------NNLFNQSMH------NHTVVEHVSGHMFIEVP---------N-GQ  183 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~-l--------~~v~~~~~~------~~~rv~~~~gDff~~~P---------~-~d  183 (214)
                      +...++|+|+  |..+..+++..|. -        +..++.+..      ..++|+++.+|.++.+|         . -|
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  149 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD  149 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence            3456899996  6667777877662 1        223332221      23589999999886322         2 28


Q ss_pred             eeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          184 ALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       184 ~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++++.     .+.+....+|+++.+.|+||
T Consensus       150 ~I~~d-----~~~~~~~~~l~~~~~~L~pG  174 (237)
T 3c3y_A          150 FGFVD-----ADKPNYIKYHERLMKLVKVG  174 (237)
T ss_dssp             EEEEC-----SCGGGHHHHHHHHHHHEEEE
T ss_pred             EEEEC-----CchHHHHHHHHHHHHhcCCC
Confidence            88764     44556788999999999886

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=85.35  E-value=0.27  Score=40.43  Aligned_cols=81  Identities=5%  Similarity=-0.178  Sum_probs=48.6

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCccc--Cc--cceeeeeh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIEV--PN--GQALFMKW  189 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~~--P~--~d~y~l~~  189 (214)
                      ..++|+|+  |..+.++++..|..        +.+++.+..         ..++++++.+|.++-+  +.  -|++++..
T Consensus        97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~  176 (304)
T 2o07_A           97 RKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDS  176 (304)
T ss_dssp             CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEEC
T ss_pred             CEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEECC
Confidence            46899997  55666777665532        334433321         2578999999987632  22  39988754


Q ss_pred             hccCCCh--HHHHHHHHHhHHhcCCC
Q 042599          190 ILSDWDD--EECLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d--~~~~~IL~~~~~Al~pg  213 (214)
                      ..|.-+.  .....+++++++.|+||
T Consensus       177 ~~~~~~~~~l~~~~~l~~~~~~Lkpg  202 (304)
T 2o07_A          177 SDPMGPAESLFKESYYQLMKTALKED  202 (304)
T ss_dssp             C-----------CHHHHHHHHHEEEE
T ss_pred             CCCCCcchhhhHHHHHHHHHhccCCC
Confidence            3332221  12467899999999886

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=85.33  E-value=0.47  Score=39.57  Aligned_cols=80  Identities=10%  Similarity=-0.022  Sum_probs=50.7

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCcc---cCc--cceeeee
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIE---VPN--GQALFMK  188 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~---~P~--~d~y~l~  188 (214)
                      ..++|+|+  |..+..+++..|..        +.+++.+..         ..++|+++.+|.++.   .+.  -|++++.
T Consensus       122 ~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d  201 (334)
T 1xj5_A          122 KKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVD  201 (334)
T ss_dssp             CEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEEC
T ss_pred             CEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEEC
Confidence            46899997  55566666665532        334443321         246899999998753   343  3988874


Q ss_pred             hhccCCChHH---HHHHHHHhHHhcCCC
Q 042599          189 WILSDWDDEE---CLKILKNCCVQCNTG  213 (214)
Q Consensus       189 ~ILHdw~d~~---~~~IL~~~~~Al~pg  213 (214)
                      .. +.+...+   ...+++++++.|+||
T Consensus       202 ~~-~p~~~~~~l~~~~~l~~~~~~Lkpg  228 (334)
T 1xj5_A          202 SS-DPIGPAKELFEKPFFQSVARALRPG  228 (334)
T ss_dssp             CC-CTTSGGGGGGSHHHHHHHHHHEEEE
T ss_pred             CC-CccCcchhhhHHHHHHHHHHhcCCC
Confidence            32 1222222   478999999999886

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=85.00  E-value=0.53  Score=35.59  Aligned_cols=76  Identities=9%  Similarity=0.059  Sum_probs=49.7

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc-cceeeeehhccCCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN-GQALFMKWILSDWD  195 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~  195 (214)
                      ...++|+|.  |..+..+.+ .|..        +..++.+..     ..+.++++.+|+++..++ -|+++....+|.  
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~--  137 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI--  137 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH--
T ss_pred             CCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH--
Confidence            357899996  544445444 4431        233333322     122499999999876554 499988766654  


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                         ...+|+++.+.|+||
T Consensus       138 ---~~~~l~~~~~~L~~g  152 (205)
T 3grz_A          138 ---LLDLIPQLDSHLNED  152 (205)
T ss_dssp             ---HHHHGGGSGGGEEEE
T ss_pred             ---HHHHHHHHHHhcCCC
Confidence               578899999999876

>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}

Probab=84.97  E-value=0.34  Score=34.57  Aligned_cols=49  Identities=16%  Similarity=0.172  Sum_probs=32.9

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRY   69 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~   69 (214)
                      ||+.+|+++..+.|+++.|...|+++...... +.|.....|.++|+-.-
T Consensus        57 LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~-~~g~~~~~Ydl~pl~~k  105 (128)
T 2vn2_A           57 LAERMTVSAAECMEMVRRLLQKGMIAIEEHTD-EQGIRNEKYTLEPLWEK  105 (128)
T ss_dssp             HHHTSSSCHHHHHHHHHHHHHTTSSEECC-----------CEECHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEEEeEEC-CCCcEEEEEehHHHHHH
Confidence            99999999999999999999999998853211 11111235666665443

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=84.93  E-value=0.34  Score=37.37  Aligned_cols=77  Identities=13%  Similarity=0.082  Sum_probs=50.2

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCcccC--------c-ccee
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP--------N-GQAL  185 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P--------~-~d~y  185 (214)
                      ...++|+|.  |..+..+++..| ..        +..++.+..      ..++|+++.+|.++.+|        . -|++
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v  149 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  149 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence            356899996  666667777655 21        222322221      13689999999876322        2 3888


Q ss_pred             eeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          186 FMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       186 ~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++     |.+......+++++.+.|+||
T Consensus       150 ~~-----d~~~~~~~~~l~~~~~~L~pg  172 (229)
T 2avd_A          150 VV-----DADKENCSAYYERCLQLLRPG  172 (229)
T ss_dssp             EE-----CSCSTTHHHHHHHHHHHEEEE
T ss_pred             EE-----CCCHHHHHHHHHHHHHHcCCC
Confidence            77     444556678899999999886

>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}

Probab=84.92  E-value=0.2  Score=40.38  Aligned_cols=41  Identities=12%  Similarity=0.164  Sum_probs=35.9

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      ||+.+|++...+.|+|+.|+..|+++++          ++.|++++....|
T Consensus        42 ia~~~gl~~stv~r~l~tL~~~G~v~~~----------~~~Y~Lg~~~~~l   82 (265)
T 2ia2_A           42 VARATDLTRATARRFLLTLVELGYVATD----------GSAFWLTPRVLEL   82 (265)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHTSEEES----------SSEEEECGGGGGT
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEec----------CCEEEEcHHHHHH
Confidence            8889999999999999999999999985          5789998865444

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=84.48  E-value=0.73  Score=38.33  Aligned_cols=82  Identities=13%  Similarity=0.146  Sum_probs=50.2

Q ss_pred             CCceEEccC--CccHHHHHHhCC-C-----chHHHHhhcc------CCCceEEecCCCCc-ccC-c-cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-R-----MNNLFNQSMH------NHTVVEHVSGHMFI-EVP-N-GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~-----l~~v~~~~~~------~~~rv~~~~gDff~-~~P-~-~d~y~l~~ILHdw  194 (214)
                      ...++|+|.  |..+..+++... .     ....++.+..      ..++|+++.+|+.+ ++| . .|+++...+.+.+
T Consensus        65 ~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l  144 (340)
T 2fyt_A           65 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFL  144 (340)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTB
T ss_pred             CCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhc
Confidence            356899997  444444554421 1     1123333321      12689999999986 566 3 4999976533222


Q ss_pred             -ChHHHHHHHHHhHHhcCCC
Q 042599          195 -DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 -~d~~~~~IL~~~~~Al~pg  213 (214)
                       ..+....+|+.+.+.|+||
T Consensus       145 ~~~~~~~~~l~~~~~~Lkpg  164 (340)
T 2fyt_A          145 LFESMLDSVLYAKNKYLAKG  164 (340)
T ss_dssp             TTTCHHHHHHHHHHHHEEEE
T ss_pred             cCHHHHHHHHHHHHhhcCCC
Confidence             2344567899999999886

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=84.32  E-value=0.3  Score=37.81  Aligned_cols=79  Identities=8%  Similarity=-0.073  Sum_probs=50.6

Q ss_pred             CCCceEEccCC--ccHHHHHHhCCCc--------hHHHHhhc----c-CC-CceEEecCCCCcccCc--cceeeeehhcc
Q 042599          131 GSVPHTKAQSG--MDAFAAAAKDARM--------NNLFNQSM----H-NH-TVVEHVSGHMFIEVPN--GQALFMKWILS  192 (214)
Q Consensus       131 g~~~~~dvgGG--~~~~~~~~~~P~l--------~~v~~~~~----~-~~-~rv~~~~gDff~~~P~--~d~y~l~~ILH  192 (214)
                      ....++|+|.|  ..+..++...|..        +..++-+.    . .. .++++  .|..+..|.  .|++++-.+||
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~LH  126 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKMLP  126 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCHH
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHHH
Confidence            34579999974  4555666677765        12222221    1 12 25666  788765554  49999999999


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                      -- ++. ...+.++.++|+||
T Consensus       127 lL-~~~-~~al~~v~~~L~pg  145 (200)
T 3fzg_A          127 VL-KQQ-DVNILDFLQLFHTQ  145 (200)
T ss_dssp             HH-HHT-TCCHHHHHHTCEEE
T ss_pred             hh-hhh-HHHHHHHHHHhCCC
Confidence            99 443 44444899999876

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=84.13  E-value=0.51  Score=32.67  Aligned_cols=45  Identities=13%  Similarity=0.113  Sum_probs=37.2

Q ss_pred             cCCCC-CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599           20 LPKNN-KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF   71 (214)
Q Consensus        20 LA~~~-~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~   71 (214)
                      |++.+ |+++..|.+.|+.|...|++++...       ....|++|+.++.+.
T Consensus        48 L~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-------r~~~y~LT~~G~~l~   93 (111)
T 3df8_A           48 IRSSIPGISSTILSRRIKDLIDSGLVERRSG-------QITTYALTEKGMNVR   93 (111)
T ss_dssp             HHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-------SSEEEEECHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHCCCEEEeec-------CcEEEEECccHHHHH
Confidence            78888 9999999999999999999998621       145788888887654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=84.10  E-value=0.95  Score=37.06  Aligned_cols=73  Identities=14%  Similarity=0.151  Sum_probs=48.5

Q ss_pred             CceEEccC--CccHHHHHHhCCC---c------hHHHHhhcc-----CCCceEEecCCCCcccC-c--cceeeeehhccC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDAR---M------NNLFNQSMH-----NHTVVEHVSGHMFIEVP-N--GQALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~---l------~~v~~~~~~-----~~~rv~~~~gDff~~~P-~--~d~y~l~~ILHd  193 (214)
                      ..++|+|.  |..+..+++..+.   +      +..++.+..     ..++|+++.+|+.+..| .  -|+++....+|.
T Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~  156 (317)
T 1dl5_A           77 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDE  156 (317)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSC
T ss_pred             CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCHHH
Confidence            56899996  6666666666654   2      233333322     23469999999987544 2  399999999998


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+        +++.+.|+||
T Consensus       157 ~~--------~~~~~~Lkpg  168 (317)
T 1dl5_A          157 VP--------ETWFTQLKEG  168 (317)
T ss_dssp             CC--------HHHHHHEEEE
T ss_pred             HH--------HHHHHhcCCC
Confidence            77        3455666664

>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A

Probab=83.87  E-value=0.61  Score=33.50  Aligned_cols=49  Identities=16%  Similarity=0.128  Sum_probs=37.7

Q ss_pred             cCCCC-CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599           20 LPKNN-KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF   71 (214)
Q Consensus        20 LA~~~-~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~   71 (214)
                      |++.+ |+++..|.+.|+.|...|++++.....  + -..-.|++|+.++.|.
T Consensus        45 L~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~--d-~r~v~y~LT~~G~~l~   94 (131)
T 4a5n_A           45 FRRICPSITQRMLTLQLRELEADGIVHREVYHQ--V-PPKVEYSLTEFGRTLE   94 (131)
T ss_dssp             HHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECS--S-SCEEEEEECTTGGGGH
T ss_pred             HHHHhcccCHHHHHHHHHHHHHCCCEEEEecCC--C-CCeEEEEECHhHHHHH
Confidence            78888 999999999999999999999863211  0 0123689999887765

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=83.87  E-value=0.36  Score=32.03  Aligned_cols=38  Identities=11%  Similarity=0.134  Sum_probs=31.9

Q ss_pred             HHHhCchhHH----------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599           10 AIQLGVLEIM----------LPKNNKETPIILDRMLRLLASYSFLTCN   47 (214)
Q Consensus        10 a~~lgifd~L----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~   47 (214)
                      -.++.|...|          ||+.+|++...+.|.|+.|...|++...
T Consensus        24 ~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~   71 (99)
T 3cuo_A           24 PKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQ   71 (99)
T ss_dssp             HHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             hHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence            3455555555          8889999999999999999999999876

>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}

Probab=83.42  E-value=0.64  Score=33.58  Aligned_cols=50  Identities=16%  Similarity=0.170  Sum_probs=36.8

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      ||+++|+++..+.|+|.-|...|+++...... +.|.....|.++|+-.-|
T Consensus        57 LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d-~~g~~~~~ydL~pL~ekL  106 (135)
T 2v79_A           57 LQEGMSISVEECTNRLRMFIQKGFLFIEECED-QNGIKFEKYSLQPLWGKL  106 (135)
T ss_dssp             HHTTSSSCHHHHHHHHHHHHHHTSCEEEEEEC-TTCCEEEEEECHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEEEeEec-CCCceEEEeeHHHHHHHH
Confidence            99999999999999999999999998742211 112223577777765543

>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2

Probab=83.32  E-value=0.45  Score=37.80  Aligned_cols=40  Identities=10%  Similarity=0.042  Sum_probs=35.1

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSR   68 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~   68 (214)
                      ||+.+|++...+.|+|+.|...|+++.+     .    .+.|.+++...
T Consensus        29 la~~~gl~~stv~r~l~~L~~~G~v~~~-----~----~~~Y~lg~~~~   68 (249)
T 1mkm_A           29 IAEKFNMSVSNAYKYMVVLEEKGFVLRK-----K----DKRYVPGYKLI   68 (249)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHTTSEEEC-----T----TSCEEECTHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCcEEEC-----C----CCcEEECHHHH
Confidence            8999999999999999999999999986     1    57899987543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=83.17  E-value=0.66  Score=36.13  Aligned_cols=78  Identities=12%  Similarity=0.060  Sum_probs=51.2

Q ss_pred             CCCceEEccC--CccHHHHHHhCCC-c--------hHHHHhhcc------CCCceEEecCCCCcccC-------------
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDAR-M--------NNLFNQSMH------NHTVVEHVSGHMFIEVP-------------  180 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~-l--------~~v~~~~~~------~~~rv~~~~gDff~~~P-------------  180 (214)
                      ....++|+|.  |..+..+++..|. .        +..++.+..      ...+|+++.+|..+..|             
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  139 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS  139 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence            3457899996  6666677777662 1        233333321      12469999999876322             


Q ss_pred             ------c-cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          181 ------N-GQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       181 ------~-~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                            . -|++++.     +..+....+|+++.+.|+||
T Consensus       140 ~f~~~~~~fD~I~~~-----~~~~~~~~~l~~~~~~L~pg  174 (239)
T 2hnk_A          140 DFAFGPSSIDLFFLD-----ADKENYPNYYPLILKLLKPG  174 (239)
T ss_dssp             TTCCSTTCEEEEEEC-----SCGGGHHHHHHHHHHHEEEE
T ss_pred             cccCCCCCcCEEEEe-----CCHHHHHHHHHHHHHHcCCC
Confidence                  2 2887765     44566678899999999886

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=82.97  E-value=0.41  Score=32.79  Aligned_cols=28  Identities=11%  Similarity=0.127  Sum_probs=26.7

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCN   47 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~   47 (214)
                      ||+.+|++...+.|.|+.|...|+++..
T Consensus        40 la~~l~is~~tv~~~l~~L~~~gli~~~   67 (114)
T 2oqg_A           40 LATRLPVSRQAIAKHLNALQACGLVESV   67 (114)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCeeEE
Confidence            8899999999999999999999999875

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=82.93  E-value=1.3  Score=34.99  Aligned_cols=78  Identities=12%  Similarity=0.117  Sum_probs=51.0

Q ss_pred             CCCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCcccC---------c-cc
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP---------N-GQ  183 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P---------~-~d  183 (214)
                      +...++|+|.  |..+..+++..| +.        +..++.+..      ..++|+++.+|..+.+|         . -|
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  158 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  158 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence            3457899996  666677777766 21        222222221      13589999999876322         2 28


Q ss_pred             eeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          184 ALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       184 ~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++++..     +.+....+|+++.+.|+||
T Consensus       159 ~V~~d~-----~~~~~~~~l~~~~~~LkpG  183 (247)
T 1sui_A          159 FIFVDA-----DKDNYLNYHKRLIDLVKVG  183 (247)
T ss_dssp             EEEECS-----CSTTHHHHHHHHHHHBCTT
T ss_pred             EEEEcC-----chHHHHHHHHHHHHhCCCC
Confidence            887752     2345678999999999997

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=82.52  E-value=1.3  Score=37.23  Aligned_cols=81  Identities=12%  Similarity=0.121  Sum_probs=51.7

Q ss_pred             CceEEccC--CccHHHHHHhCC-Cc-----hHHHHhhc------cCCCceEEecCCCCc-ccCc-cceeeeehhccCCCh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDA-RM-----NNLFNQSM------HNHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWDD  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P-~l-----~~v~~~~~------~~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d  196 (214)
                      ..++|+|.  |..+..++++.. .+     ...++.+.      ...++|+++.+|+.+ +.|. -|+++...+.|-...
T Consensus        65 ~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~~l~~  144 (376)
T 3r0q_C           65 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLR  144 (376)
T ss_dssp             CEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBTTBTT
T ss_pred             CEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhhcccc
Confidence            56899996  555555555433 11     12222221      123679999999986 4553 599998766666543


Q ss_pred             H-HHHHHHHHhHHhcCCC
Q 042599          197 E-ECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~-~~~~IL~~~~~Al~pg  213 (214)
                      + .-..+|+.+.+.|+||
T Consensus       145 e~~~~~~l~~~~~~Lkpg  162 (376)
T 3r0q_C          145 ESMFDSVISARDRWLKPT  162 (376)
T ss_dssp             TCTHHHHHHHHHHHEEEE
T ss_pred             hHHHHHHHHHHHhhCCCC
Confidence            3 3566899999999886

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=82.45  E-value=2.6  Score=31.25  Aligned_cols=81  Identities=10%  Similarity=-0.007  Sum_probs=52.5

Q ss_pred             CCceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc-----CCCceEEecCCCCcc---cCc--cceeeeehhcc
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH-----NHTVVEHVSGHMFIE---VPN--GQALFMKWILS  192 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~-----~~~rv~~~~gDff~~---~P~--~d~y~l~~ILH  192 (214)
                      ...++|+|.  |..+..+++.... +      +..++.+..     ..++++++.+|+.+.   .+.  -|++++.-.+|
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~  124 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYN  124 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTT
T ss_pred             CCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCC
Confidence            356899997  4444444443221 1      233333321     236899999999863   332  39998876654


Q ss_pred             CCChHHHHHHHHHhHH--hcCCC
Q 042599          193 DWDDEECLKILKNCCV--QCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~--Al~pg  213 (214)
                       +..++..++|+.+.+  .|+||
T Consensus       125 -~~~~~~~~~l~~~~~~~~L~pg  146 (189)
T 3p9n_A          125 -VDSADVDAILAALGTNGWTREG  146 (189)
T ss_dssp             -SCHHHHHHHHHHHHHSSSCCTT
T ss_pred             -cchhhHHHHHHHHHhcCccCCC
Confidence             446788899999998  99987

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=82.43  E-value=1.7  Score=33.96  Aligned_cols=76  Identities=8%  Similarity=-0.049  Sum_probs=48.7

Q ss_pred             CceEEccC--CccHHHHHHh----CCCc--------hHHHHhhccCCCceEEecCCCCcc--cC---c--cceeeeehhc
Q 042599          133 VPHTKAQS--GMDAFAAAAK----DARM--------NNLFNQSMHNHTVVEHVSGHMFIE--VP---N--GQALFMKWIL  191 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~----~P~l--------~~v~~~~~~~~~rv~~~~gDff~~--~P---~--~d~y~l~~IL  191 (214)
                      ..++|+|.  |..+..+++.    .|.-        +..++.+....++|+++.||..+.  +|   .  -|++++... 
T Consensus        83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~-  161 (236)
T 2bm8_A           83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-  161 (236)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-
T ss_pred             CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc-
Confidence            57899996  5555555554    4532        112222222246899999999873  23   2  288887654 


Q ss_pred             cCCChHHHHHHHHHhHH-hcCCC
Q 042599          192 SDWDDEECLKILKNCCV-QCNTG  213 (214)
Q Consensus       192 Hdw~d~~~~~IL~~~~~-Al~pg  213 (214)
                      |.    +...+|+++.+ .|+||
T Consensus       162 ~~----~~~~~l~~~~r~~LkpG  180 (236)
T 2bm8_A          162 HA----NTFNIMKWAVDHLLEEG  180 (236)
T ss_dssp             CS----SHHHHHHHHHHHTCCTT
T ss_pred             hH----hHHHHHHHHHHhhCCCC
Confidence            53    45679999996 99987

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=82.35  E-value=0.87  Score=33.42  Aligned_cols=57  Identities=18%  Similarity=0.274  Sum_probs=41.6

Q ss_pred             HHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhc
Q 042599            5 MTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVS   67 (214)
Q Consensus         5 ~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s   67 (214)
                      .+|.--.++.|...|         ||+.+|++...+.+-|+.|...|+++...     +|. ...|++|+..
T Consensus        53 ~aL~~p~R~~IL~~L~~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~-----~Gr-~~~y~lt~~~  118 (151)
T 3f6v_A           53 EVAAEPTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRK-----DGR-FRYYRLDPQG  118 (151)
T ss_dssp             HHHTSHHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEE-----ETT-EEEEEECHHH
T ss_pred             HHhCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe-----cCC-EEEEEEChHH
Confidence            344445566666666         99999999999999999999999998762     110 2356766643

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=82.34  E-value=0.58  Score=37.12  Aligned_cols=77  Identities=13%  Similarity=0.041  Sum_probs=49.1

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCcccCc--cceeeeehhccCCC
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN--GQALFMKWILSDWD  195 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~  195 (214)
                      ....++|+|.  |..+..+++..+.+      +..++.+..     ..+ ++++.+|+.+.+|.  -|+++....     
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~~~~fD~Vv~n~~-----  193 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALPFGPFDLLVANLY-----  193 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGGGCCEEEEEEECC-----
T ss_pred             CCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCcCCCCCEEEECCc-----
Confidence            3457899996  55555556555532      222322221     122 89999999877663  488876432     


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      .+....+++++.+.|+||
T Consensus       194 ~~~~~~~l~~~~~~Lkpg  211 (254)
T 2nxc_A          194 AELHAALAPRYREALVPG  211 (254)
T ss_dssp             HHHHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            234678999999999886

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=82.31  E-value=1.2  Score=34.49  Aligned_cols=75  Identities=11%  Similarity=0.035  Sum_probs=48.5

Q ss_pred             ceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CC-CceEEecCCCCcc---cCcc--ceeeeehh
Q 042599          134 PHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NH-TVVEHVSGHMFIE---VPNG--QALFMKWI  190 (214)
Q Consensus       134 ~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~-~rv~~~~gDff~~---~P~~--d~y~l~~I  190 (214)
                      .++|+|.  |..+..+++..| +-        +..++.+..      .. ++|+++.||..+.   ++.+  |++++.. 
T Consensus        59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~-  137 (221)
T 3dr5_A           59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV-  137 (221)
T ss_dssp             EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC-
Confidence            6889996  666667777655 21        222332221      12 5899999998763   3222  8887653 


Q ss_pred             ccCCChHHHHHHHHHhHHhcCCC
Q 042599          191 LSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       191 LHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                          +.......++.+.+.|+||
T Consensus       138 ----~~~~~~~~l~~~~~~LkpG  156 (221)
T 3dr5_A          138 ----SPMDLKALVDAAWPLLRRG  156 (221)
T ss_dssp             ----CTTTHHHHHHHHHHHEEEE
T ss_pred             ----cHHHHHHHHHHHHHHcCCC
Confidence                3344566899999999886

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=82.26  E-value=0.72  Score=33.68  Aligned_cols=69  Identities=10%  Similarity=-0.025  Sum_probs=44.6

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc--cceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN--GQALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~  195 (214)
                      ..++|+|.  |.....+++  +..        +..++.+..     ..++++++.+|+.+++|.  -|++++..+     
T Consensus        37 ~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~-----  109 (183)
T 2yxd_A           37 DVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGT-----  109 (183)
T ss_dssp             CEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSC-----
T ss_pred             CEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCc-----
Confidence            56899997  444455555  321        233333221     125799999999987774  499998877     


Q ss_pred             hHHHHHHHHHhHHh
Q 042599          196 DEECLKILKNCCVQ  209 (214)
Q Consensus       196 d~~~~~IL~~~~~A  209 (214)
                       +....+|+++.+.
T Consensus       110 -~~~~~~l~~~~~~  122 (183)
T 2yxd_A          110 -KNIEKIIEILDKK  122 (183)
T ss_dssp             -SCHHHHHHHHHHT
T ss_pred             -ccHHHHHHHHhhC
Confidence             3445677777776

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=82.25  E-value=1.7  Score=34.17  Aligned_cols=82  Identities=7%  Similarity=-0.023  Sum_probs=49.0

Q ss_pred             CCceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc------CCCceEEecCCCCcc---cCc--cceeeeehhc
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH------NHTVVEHVSGHMFIE---VPN--GQALFMKWIL  191 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~------~~~rv~~~~gDff~~---~P~--~d~y~l~~IL  191 (214)
                      ...++|+|.  |..+..++++.+. +      +..++.+..      ..++|+++.+|+.+.   +|.  -|+++..--.
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy  129 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPY  129 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCC
Confidence            356899996  5555556666662 2      233333321      235799999999863   333  3888873221


Q ss_pred             cC------------------CChHHHHHHHHHhHHhcCCC
Q 042599          192 SD------------------WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       192 Hd------------------w~d~~~~~IL~~~~~Al~pg  213 (214)
                      +.                  ........+|+.+.+.|+||
T Consensus       130 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg  169 (259)
T 3lpm_A          130 FATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG  169 (259)
T ss_dssp             -----------------------HHHHHHHHHHHHHEEEE
T ss_pred             CCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC
Confidence            11                  11234567999999999886

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=82.25  E-value=0.46  Score=31.74  Aligned_cols=28  Identities=18%  Similarity=0.121  Sum_probs=26.6

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCN   47 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~   47 (214)
                      ||+.+|++...+.+-|+.|...|+++..
T Consensus        42 la~~l~is~~tvs~~L~~L~~~Glv~~~   69 (98)
T 3jth_A           42 LCAKLQLSQSALSQHLAWLRRDGLVTTR   69 (98)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence            8889999999999999999999999876

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=82.12  E-value=0.56  Score=32.95  Aligned_cols=39  Identities=10%  Similarity=-0.020  Sum_probs=32.9

Q ss_pred             HHHHhCchhHH----------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599            9 TAIQLGVLEIM----------LPKNNKETPIILDRMLRLLASYSFLTCN   47 (214)
Q Consensus         9 ~a~~lgifd~L----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~   47 (214)
                      --.++.|+..|          ||+.+|++...+.+.|+.|...|++...
T Consensus        41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~   89 (122)
T 1u2w_A           41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFR   89 (122)
T ss_dssp             SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred             CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence            33455666666          8889999999999999999999999875

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=81.93  E-value=0.84  Score=31.16  Aligned_cols=49  Identities=18%  Similarity=0.150  Sum_probs=36.4

Q ss_pred             cCCCC-CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599           20 LPKNN-KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF   71 (214)
Q Consensus        20 LA~~~-~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~   71 (214)
                      ||+.+ |+++..+.+.|+.|...|++++....  .+ ...-.|.+|+.++.+.
T Consensus        33 La~~l~~is~~tls~~L~~Le~~GlI~r~~~~--~d-~r~~~y~LT~~G~~l~   82 (107)
T 2hzt_A           33 LKRLMPNITQKMLTQQLRELEADGVINRIVYN--QV-PPKVEYELSEYGRSLE   82 (107)
T ss_dssp             HHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEC--SS-SCEEEEEECTTGGGGH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHCCCEEEeecC--CC-CCeEEEEECccHHHHH
Confidence            88888 99999999999999999999976321  10 0123588888765543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=81.04  E-value=1.6  Score=35.06  Aligned_cols=76  Identities=7%  Similarity=-0.029  Sum_probs=50.2

Q ss_pred             CCceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw  194 (214)
                      ...++|+|.  |..+..+++..+. .      +..++.+..      ...+++++.+|.++..+.  -|++++.     .
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~-----~  200 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG-----Y  200 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC-----C
T ss_pred             CCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEEC-----C
Confidence            457899996  6666677776664 2      233333321      134699999999986553  4888773     2


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      + .....+|+++.+.|+||
T Consensus       201 p-~~~~~~l~~~~~~Lkpg  218 (278)
T 2frn_A          201 V-VRTHEFIPKALSIAKDG  218 (278)
T ss_dssp             C-SSGGGGHHHHHHHEEEE
T ss_pred             c-hhHHHHHHHHHHHCCCC
Confidence            2 23367888888888886

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=80.82  E-value=0.53  Score=30.80  Aligned_cols=43  Identities=16%  Similarity=0.051  Sum_probs=35.8

Q ss_pred             cCCCCCCChh-hHHHHHHHHhcCcceeeecccccCCCccccceecchhccc
Q 042599           20 LPKNNKETPI-ILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRY   69 (214)
Q Consensus        20 LA~~~~~~~~-~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~   69 (214)
                      ||+.+|++.. .++|.|..|...|+++...     .| .+ .|.+|+.++.
T Consensus        31 iA~~Lgit~~~aVr~hL~~Le~eGlV~~~~-----~g-RP-~w~LT~~g~~   74 (79)
T 1xmk_A           31 LAKNIGLTKARDINAVLIDMERQGDVYRQG-----TT-PP-IWHLTDKKRE   74 (79)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHTTSEEEEC-----SS-SC-EEEECHHHHT
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHCCCEEecC-----CC-CC-CeEeCHhHHh
Confidence            9999999999 9999999999999998641     11 24 8999988764

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=80.76  E-value=3.7  Score=35.49  Aligned_cols=79  Identities=16%  Similarity=0.103  Sum_probs=50.2

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhh-------cc-----C--CCceEEecCCCC-cc--c---C-
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQS-------MH-----N--HTVVEHVSGHMF-IE--V---P-  180 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~-------~~-----~--~~rv~~~~gDff-~~--~---P-  180 (214)
                      ...++|+|.  |..+..+++..|..        +..++.+       ..     .  ..+|+++.+|-+ ++  +   . 
T Consensus       243 g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~  322 (433)
T 1u2z_A          243 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIP  322 (433)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGG
T ss_pred             CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccccC
Confidence            356999996  66666666655532        2223322       11     1  368999887544 42  2   1 


Q ss_pred             ccceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          181 NGQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       181 ~~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..|++++.+.++  . ++....|+++.+.|+||
T Consensus       323 ~FDvIvvn~~l~--~-~d~~~~L~el~r~LKpG  352 (433)
T 1u2z_A          323 QCDVILVNNFLF--D-EDLNKKVEKILQTAKVG  352 (433)
T ss_dssp             GCSEEEECCTTC--C-HHHHHHHHHHHTTCCTT
T ss_pred             CCCEEEEeCccc--c-ccHHHHHHHHHHhCCCC
Confidence            249999877774  2 45567789999999998

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=80.53  E-value=0.37  Score=38.58  Aligned_cols=40  Identities=20%  Similarity=0.213  Sum_probs=34.4

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSR   68 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~   68 (214)
                      ||+.+|++...+.|+|+.|+..|++++++         .++|.+++...
T Consensus        44 ia~~~gl~kstv~r~l~tL~~~G~v~~~~---------~~~Y~lg~~~~   83 (260)
T 2o0y_A           44 LVEGTKLPKTTVVRLVATMCARSVLTSRA---------DGSYSLGPEML   83 (260)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHTTSEEECT---------TSCEEECHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEECC---------CCeEEecHHHH
Confidence            88899999999999999999999999862         33899987543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=80.18  E-value=2.1  Score=34.29  Aligned_cols=80  Identities=9%  Similarity=0.051  Sum_probs=54.4

Q ss_pred             CCceEEccCCccHHHHHHhCCCc--------hH---HHHhhc-cCCCceEEecCCCCcc-cCc-cceeeeehhccCCChH
Q 042599          132 SVPHTKAQSGMDAFAAAAKDARM--------NN---LFNQSM-HNHTVVEHVSGHMFIE-VPN-GQALFMKWILSDWDDE  197 (214)
Q Consensus       132 ~~~~~dvgGG~~~~~~~~~~P~l--------~~---v~~~~~-~~~~rv~~~~gDff~~-~P~-~d~y~l~~ILHdw~d~  197 (214)
                      ...++|+|.|...+.+... |..        +.   +.+... ......++...|+... .|. +|+.++--++|.-.++
T Consensus       106 p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~LE~q  184 (253)
T 3frh_A          106 PRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPLLERE  184 (253)
T ss_dssp             CSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHHHHHH
T ss_pred             CCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHHhhhh
Confidence            3569999987777766544 543        22   222221 1346789999999964 443 6999999888888777


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +-...+ ++.++|.++
T Consensus       185 ~~~~~~-~ll~aL~~~  199 (253)
T 3frh_A          185 QAGSAM-ALLQSLNTP  199 (253)
T ss_dssp             STTHHH-HHHHHCBCS
T ss_pred             chhhHH-HHHHHhcCC
Confidence            766666 777788765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	1e-20
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	4e-20
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	3e-10
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	3e-09
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	5e-08
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	9e-06
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	8e-06
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	0.001
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	0.002

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 81.0 bits (200), Expect = 1e-20
 Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 18/91 (19%)

Query: 1   AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
           +VLPM +K+A++L +LEI+                 LP  N + P++LDRMLRLLA Y  
Sbjct: 18  SVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYII 77

Query: 44  LTCNLATNIKDGSAQRLYGLASVSRYFFPNE 74
           LTC++ T  +DG  QRLYGLA+V++Y   NE
Sbjct: 78  LTCSVRT-QQDGKVQRLYGLATVAKYLVKNE 107

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 79.5 bits (196), Expect = 4e-20
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 21/94 (22%)

Query: 2   VLPMTMKTAIQLGVLEIM--------------------LPKNNKETPIILDRMLRLLASY 41
           V P  +  AI L + EI+                        + + P  LDRMLRLLASY
Sbjct: 18  VYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY 77

Query: 42  SFLTCNLATNIKDGSAQRLYGLASVSRYFFPNED 75
           S LT    T I+DG A+R+YGL+ V +Y  P+E 
Sbjct: 78  SVLTSTTRT-IEDGGAERVYGLSMVGKYLVPDES 110

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 56.0 bits (134), Expect = 3e-10
 Identities = 51/195 (26%), Positives = 71/195 (36%), Gaps = 86/195 (44%)

Query: 75  DGVSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNRYYLKNALLEGSVP 134
           DGVS++   L+ QDKV M+SW                          Y+LK+A+L+G +P
Sbjct: 1   DGVSISALNLMNQDKVLMESW--------------------------YHLKDAVLDGGIP 34

Query: 135 HTKAQSGMDAFAAAAKDARMNNLFNQSMHNHT--VVEHV-------------------SG 173
             KA  GM AF     D R N +FN+ M +H+   ++ +                   +G
Sbjct: 35  FNKAY-GMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTG 93

Query: 174 HMFIEV--------------------------------------PNGQALFMKWILSDWD 195
            +   +                                      P   A+FMKWI  DW 
Sbjct: 94  AVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWS 153

Query: 196 DEECLKILKNCCVQC 210
           DE CLK LKNC    
Sbjct: 154 DEHCLKFLKNCYEAL 168

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 51/172 (29%)

Query: 77  VSLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNR--------YYLKN-- 126
           + LAP +  + D     S+           +K  + E  +             +  KN  
Sbjct: 1   LCLAPMVECVLDPTLSGSY---------HELKKWIYEEDLTLFGVTLGSGFWDFLDKNPE 51

Query: 127 ------------------ALLEGSVPHTKAQSGMD----------AFAAAAKDARMNNL- 157
                             AL +        +S +D                   +     
Sbjct: 52  YNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFD 111

Query: 158 ---FNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
                +++     + +V G MF  +PN  A+ +K+IL +W D++CL+ILK C
Sbjct: 112 RPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKC 163

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 49.7 bits (118), Expect = 5e-08
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 160 QSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
           ++    + +EHV G MF  VP G A+ +K +  +W DE+C++ L NC
Sbjct: 118 ENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNC 164

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 42.8 bits (100), Expect = 9e-06
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 43/130 (33%)

Query: 78  SLAPTLLIIQDKVNMDSWACKYTQHSYLCMKDALLEGFINTLNRYYLKNALLEGSVPHTK 137
            LA     +     +  W                             K A+++  +   K
Sbjct: 3   YLASFTTFLCYPALLQVW--------------------------MNFKEAVVDEDIDLFK 36

Query: 138 AQSGMDAFAAAAKDARMNNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDE 197
              G+  +    KD +MN +FN+SM +                   A  MK +L  +   
Sbjct: 37  NVHGVTKYEFMGKDKKMNQIFNKSMVDVC-----------------ATEMKRMLEIYTGF 79

Query: 198 ECLKILKNCC 207
           E +  L +  
Sbjct: 80  EGISTLVDVG 89

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 41.0 bits (96), Expect = 8e-06
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 23/89 (25%)

Query: 2   VLPMTMKTAIQLGVLEIM---------------LPKNNKETPIILDRMLRLLASYSFLTC 46
           +  M++K A+++ +  I+               L   + +   +  R++R LA   F   
Sbjct: 21  IDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV-RRLMRYLAHNGFFEI 79

Query: 47  NLATNIKDGSAQRLYGLASVSRYFFPNED 75
                      +  Y L   S       D
Sbjct: 80  -------ITKEEESYALTVASELLVRGSD 101

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 1/45 (2%)

Query: 122 YYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHT 166
             L + +  G   +     G   +   + D  + + F+  M    
Sbjct: 23  TGLLDVVRTGRPAYAGR-YGRPFWEDLSADVALADSFDALMSCDE 66

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 1/45 (2%)

Query: 122 YYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNHT 166
             L +A+  G   +     G   +   A    +   F+  +    
Sbjct: 22  TRLPDAIRTGRPTYESIY-GKPFYEDLAGRPDLRASFDSLLACDQ 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.95
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.94
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.93
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.8
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.74
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	99.54
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.46
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.46
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.41
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.39
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	97.78
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	97.77
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.48
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	97.46
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	97.28
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.24
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.16
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.04
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.79
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	96.54
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	96.43
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	96.42
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	96.11
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	96.1
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	96.03
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.97
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	95.91
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	95.89
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	95.82
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	95.8
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	95.62
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	95.53
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	95.45
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	95.4
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	94.29
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	93.38
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	91.06
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	90.43
d1r7ja_	90	Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu	90.43
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	90.07
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	89.59
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	89.33
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	89.07
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	87.62
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	86.89
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	86.83
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	86.79
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	86.41
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	85.91
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	85.57
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	85.44
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	84.94
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	84.51
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	83.84
d1xd7a_	127	Hypothetical protein ywnA {Bacillus subtilis [TaxI	82.57
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	80.99
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	80.56
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	80.03

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.95  E-value=4.1e-28  Score=196.25  Aligned_cols=115  Identities=22%  Similarity=0.401  Sum_probs=96.6

Q ss_pred             cCCcchhhhcchhhHhhHHhhhhhcc--HHHHH------hcCCCceEEccC--CccHHHHHHhCCCc-------hHHHHh
Q 042599           98 KYTQHSYLCMKDALLEGFINTLNRYY--LKNAL------LEGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQ  160 (214)
Q Consensus        98 ~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~------~~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~  160 (214)
                      +.++|+|+.++|+..+.|+.+|....  ....+      -+|...++||||  |..+.++++++|++       +.+++.
T Consensus        39 G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~  118 (244)
T d1fp2a2          39 GSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN  118 (244)
T ss_dssp             SSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred             CCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHh
Confidence            56899999999999999999997621  11222      135567999998  77788999999976       566665


Q ss_pred             hccCCCceEEecCCCCcccCccceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          161 SMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       161 ~~~~~~rv~~~~gDff~~~P~~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +.. .+||++++||||+++|.+|+|+|++|||||+|++|++||+||++||+||
T Consensus       119 ~~~-~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pg  170 (244)
T d1fp2a2         119 LSG-SNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTND  170 (244)
T ss_dssp             CCC-BTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGG
T ss_pred             Ccc-cCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHHHHHHHcCcc
Confidence            543 5799999999999999899999999999999999999999999999996

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.94  E-value=1.9e-27  Score=192.23  Aligned_cols=135  Identities=20%  Similarity=0.356  Sum_probs=104.3

Q ss_pred             chhhHHhhhhchhhhhhhcc-----------------cCCcchhhhcchhhHhhHHhhhhhcc------HHHHHh--cCC
Q 042599           78 SLAPTLLIIQDKVNMDSWAC-----------------KYTQHSYLCMKDALLEGFINTLNRYY------LKNALL--EGS  132 (214)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~p~~~~~f~~~m~~~~------~~~~~~--~g~  132 (214)
                      ++++++.++..|.++.+|..                 +.++|+|+.++|+..+.|+.+|....      +.+...  ++.
T Consensus         3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~   82 (244)
T d1fp1d2           3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGI   82 (244)
T ss_dssp             CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTC
T ss_pred             cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence            57777777777777777631                 35789999999999999999996511      111111  234


Q ss_pred             CceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCcccCccceeeeehhccCCChHHHHHHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKIL  203 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l~~ILHdw~d~~~~~IL  203 (214)
                      ..++||||  |..+.++++++|++       +.+++.... .+||++++||||+++|.+|+|+|++|||||+|++|++||
T Consensus        83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~-~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL  161 (244)
T d1fp1d2          83 STLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP-LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFL  161 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-CTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHH
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCC-CCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHH
Confidence            66999998  77788999999986       556554433 589999999999999999999999999999999999999


Q ss_pred             HHhHHhcCCC
Q 042599          204 KNCCVQCNTG  213 (214)
Q Consensus       204 ~~~~~Al~pg  213 (214)
                      +++++||+||
T Consensus       162 ~~~~~aL~pg  171 (244)
T d1fp1d2         162 SNCHKALSPN  171 (244)
T ss_dssp             HHHHHHEEEE
T ss_pred             HHHHHHcCCC
Confidence            9999999986

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.93  E-value=6.2e-26  Score=183.26  Aligned_cols=136  Identities=31%  Similarity=0.497  Sum_probs=110.8

Q ss_pred             CchhhHHhhhhchhhhhhhcc----------------cCCcchhhhcchhhHhhHHhhhhhcc--HHHHH-h-----cCC
Q 042599           77 VSLAPTLLIIQDKVNMDSWAC----------------KYTQHSYLCMKDALLEGFINTLNRYY--LKNAL-L-----EGS  132 (214)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~-~-----~g~  132 (214)
                      .|+++++.+.+++.++.+|..                +.++|+|+.++|+..+.|+.+|....  ....+ .     .+.
T Consensus         3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~   82 (243)
T d1kyza2           3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL   82 (243)
T ss_dssp             CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSC
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCC
Confidence            578898888888878888853                46789999999999999999996521  11112 1     234


Q ss_pred             CceEEccC--CccHHHHHHhCCCch-------HHHHhhccCCCceEEecCCCCcccCccceeeeehhccCCChHHHHHHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARMN-------NLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKIL  203 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l~-------~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l~~ILHdw~d~~~~~IL  203 (214)
                      ..++||||  |..+.++++++|+++       .+++.+. ..+|+++++||||+++|.+|+|++++|||||+|++|++||
T Consensus        83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~-~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL  161 (243)
T d1kyza2          83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP-SYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFL  161 (243)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCC-CCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHH
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcc-cCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHH
Confidence            56999998  777889999999874       4443333 3579999999999999999999999999999999999999


Q ss_pred             HHhHHhcCCC
Q 042599          204 KNCCVQCNTG  213 (214)
Q Consensus       204 ~~~~~Al~pg  213 (214)
                      +++++||+||
T Consensus       162 ~~~~~al~pg  171 (243)
T d1kyza2         162 KNCYEALPDN  171 (243)
T ss_dssp             HHHHHHCCSS
T ss_pred             HHHHHhcCCC
Confidence            9999999997

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.80  E-value=4.2e-20  Score=149.71  Aligned_cols=116  Identities=18%  Similarity=0.235  Sum_probs=94.0

Q ss_pred             cCCcchhhhcchhhHhhHHhhhhhcc--HHHHHh-----cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhh
Q 042599           98 KYTQHSYLCMKDALLEGFINTLNRYY--LKNALL-----EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQS  161 (214)
Q Consensus        98 ~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~~-----~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~  161 (214)
                      +.++|+|+.++|+..+.|+++|....  ....+.     ++...++||||  |..+..+++++|++       +.+++.+
T Consensus        41 G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a  120 (256)
T d1qzza2          41 GRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERA  120 (256)
T ss_dssp             SSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHH
T ss_pred             CCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHH
Confidence            56899999999999999999997521  112222     24456999998  77788999999976       4444433


Q ss_pred             c------cCCCceEEecCCCCcccCc-cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          162 M------HNHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       162 ~------~~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .      ...+||+++++|||+++|. +|+|++++|||+|+|++|++||++|+++|+||
T Consensus       121 ~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg  179 (256)
T d1qzza2         121 RRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG  179 (256)
T ss_dssp             HHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             HHHHhhcCCcceeeeeeeeccccccccchhhhccccccccCcHHHHHHHHHHHhhcCCc
Confidence            2      1357999999999999996 59999999999999999999999999999997

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.74  E-value=1.9e-18  Score=139.43  Aligned_cols=116  Identities=19%  Similarity=0.253  Sum_probs=92.9

Q ss_pred             cCCcchhhhcchhhHhhHHhhhhhcc--HHHHHh-----cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhh
Q 042599           98 KYTQHSYLCMKDALLEGFINTLNRYY--LKNALL-----EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQS  161 (214)
Q Consensus        98 ~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~~-----~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~  161 (214)
                      +.++|+|+.++|+..+.|+.+|....  ..+.+.     .+...++||||  |..+..+++++|++       +.+++.+
T Consensus        40 G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a  119 (253)
T d1tw3a2          40 GKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTA  119 (253)
T ss_dssp             SSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHH
T ss_pred             CCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHH
Confidence            56899999999999999999996511  112221     23356999998  77778899999976       3444433


Q ss_pred             cc------CCCceEEecCCCCcccCc-cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          162 MH------NHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       162 ~~------~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..      ..+||+++.||||+++|. .|+|+++++||+|+|+++++||++++++|+||
T Consensus       120 ~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG  178 (253)
T d1tw3a2         120 RSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG  178 (253)
T ss_dssp             HHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred             HHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcCCC
Confidence            21      247999999999998885 69999999999999999999999999999997

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.54  E-value=1.4e-15  Score=102.54  Aligned_cols=64  Identities=20%  Similarity=0.312  Sum_probs=59.6

Q ss_pred             hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599            2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP   72 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~   72 (214)
                      +.+++|++|+++||||+|         ||+++|++++.+.||||+|++.|+|++++         ++.|++|+.|+.|++
T Consensus        13 ~~~~aL~~av~L~ifd~l~~gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~~---------~~~y~lt~~s~~L~~   83 (85)
T d1tw3a1          13 HTPMVVRTAATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA---------PGEFVPTEVGELLAD   83 (85)
T ss_dssp             HHHHHHHHHHHTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE---------TTEEEECTTGGGGST
T ss_pred             HHHHHHHHHHHcCcHHHhccCCCCHHHHHHHhCcChhHHHHHHHHHHHCCCeEecC---------CCeEecCHHHHHhhc
Confidence            467899999999999999         99999999999999999999999999872         789999999999998


Q ss_pred             CC
Q 042599           73 NE   74 (214)
Q Consensus        73 ~~   74 (214)
                      |+
T Consensus        84 Dh   85 (85)
T d1tw3a1          84 DH   85 (85)
T ss_dssp             TS
T ss_pred             CC
Confidence            75

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.46  E-value=1.9e-14  Score=100.24  Aligned_cols=73  Identities=53%  Similarity=0.949  Sum_probs=57.2

Q ss_pred             ChhhHHHHHHHHhCchhHH-------------cCCCCCCC----hhhHHHHHHHHhcCcceeeecccccCCCccccceec
Q 042599            1 AVLPMTMKTAIQLGVLEIM-------------LPKNNKET----PIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGL   63 (214)
Q Consensus         1 ~~~~~~L~~a~~lgifd~L-------------LA~~~~~~----~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~   63 (214)
                      ++.+++|++|++|||||+|             ||.+++.+    +..|+||||+|++.|+|++...+. ++|....+|++
T Consensus        18 ~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~~-~dg~~~~~Y~L   96 (107)
T d1kyza1          18 SVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQ-QDGKVQRLYGL   96 (107)
T ss_dssp             THHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEEC-TTSCEEEEEEE
T ss_pred             hHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeecC-CCCCeeeEEec
Confidence            4689999999999999999             44555442    557999999999999998754322 33333568999


Q ss_pred             chhccccCCCC
Q 042599           64 ASVSRYFFPNE   74 (214)
Q Consensus        64 t~~s~~l~~~~   74 (214)
                      ||+|++|++|+
T Consensus        97 Tpvsk~Lv~de  107 (107)
T d1kyza1          97 ATVAKYLVKNE  107 (107)
T ss_dssp             CHHHHHHSCCT
T ss_pred             chhHHhhcCCC
Confidence            99999998763

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.46  E-value=1.2e-14  Score=100.67  Aligned_cols=66  Identities=20%  Similarity=0.290  Sum_probs=57.0

Q ss_pred             hhhHHHHHHHHhCchhHH-----------cCCCCCCCh---hhHHHHHHHHhcCcceeeecccccCCCccccceecchhc
Q 042599            2 VLPMTMKTAIQLGVLEIM-----------LPKNNKETP---IILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVS   67 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L-----------LA~~~~~~~---~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s   67 (214)
                      +.+++|++|++|||||+|           ||+++++++   +.|.||||+|++.|+|+++..       ++++|++||+|
T Consensus        21 ~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~-------~~~~Y~lt~~s   93 (101)
T d1fp2a1          21 IDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITK-------EEESYALTVAS   93 (101)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEES-------SSEEEEECHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeecC-------CCCeEecCHHH
Confidence            568999999999999999           888888754   569999999999999987631       16799999999


Q ss_pred             cccCCCC
Q 042599           68 RYFFPNE   74 (214)
Q Consensus        68 ~~l~~~~   74 (214)
                      +.|++++
T Consensus        94 ~~Lv~~~  100 (101)
T d1fp2a1          94 ELLVRGS  100 (101)
T ss_dssp             HTTSTTS
T ss_pred             HHhhcCC
Confidence            9998775

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.41  E-value=1.3e-13  Score=96.17  Aligned_cols=73  Identities=47%  Similarity=0.762  Sum_probs=57.2

Q ss_pred             ChhhHHHHHHHHhCchhHH--------------cCCCCCC---C---hhhHHHHHHHHhcCcceeeecccccCCCccccc
Q 042599            1 AVLPMTMKTAIQLGVLEIM--------------LPKNNKE---T---PIILDRMLRLLASYSFLTCNLATNIKDGSAQRL   60 (214)
Q Consensus         1 ~~~~~~L~~a~~lgifd~L--------------LA~~~~~---~---~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~   60 (214)
                      .+.+++|++|++|||||+|              ||+++++   +   +..|.||||.|++.|+|.+...+. ++|.....
T Consensus        17 ~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~~~~~~-~~g~~e~~   95 (110)
T d1fp1d1          17 LVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTI-EDGGAERV   95 (110)
T ss_dssp             THHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEEC-TTSCEEEE
T ss_pred             hHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccccccccC-CCCCeeeE
Confidence            3678999999999999999              6666554   3   346999999999999998654322 33333567


Q ss_pred             eecchhccccCCCC
Q 042599           61 YGLASVSRYFFPNE   74 (214)
Q Consensus        61 y~~t~~s~~l~~~~   74 (214)
                      |++||+|++|++++
T Consensus        96 Y~Ltpvsk~Lv~de  109 (110)
T d1fp1d1          96 YGLSMVGKYLVPDE  109 (110)
T ss_dssp             EEECTTGGGGSTTC
T ss_pred             EecchhhHhhcCCC
Confidence            99999999999875

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.39  E-value=7.4e-14  Score=95.09  Aligned_cols=64  Identities=20%  Similarity=0.308  Sum_probs=57.5

Q ss_pred             hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599            2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP   72 (214)
Q Consensus         2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~   72 (214)
                      +.+++|++|++|||||+|         ||+++|++++.+.||||+|+++|+|++++     ++  .+.|++|++|+.|.+
T Consensus        19 ~~~~~L~~aveL~ifd~L~~gp~t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~~-----d~--~~~~~~t~~g~lL~d   91 (92)
T d1qzza1          19 VTPMALRVAATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGE-----KQ--GRPLRPTRLGMLLAD   91 (92)
T ss_dssp             HHHHHHHHHHHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCC-----C---CCCCEECTTGGGGST
T ss_pred             HHHHHHHHHHHcCchHHHhCCCCCHHHHHHHHCcCchHHHHHHHHHHHCCCeeeec-----CC--CceecccHHHHhccC
Confidence            578999999999999999         99999999999999999999999999872     11  567999999999875

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.3e-05  Score=61.42  Aligned_cols=82  Identities=10%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             CCceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc-----CCCceEEecCCCCc-ccCcc--ceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPNG--QALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw  194 (214)
                      ...++|+|+  |..+..++++.+. +      +..++.+..     ....++++.+|+.+ +.+..  |+++...+||..
T Consensus        61 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~  140 (222)
T d2ex4a1          61 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL  140 (222)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred             CCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence            456999997  5555666766664 2      344544432     23568999999986 34433  999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++++..++|+++++.|+||
T Consensus       141 ~~~~~~~~l~~i~~~Lk~~  159 (222)
T d2ex4a1         141 TDQHLAEFLRRCKGSLRPN  159 (222)
T ss_dssp             CHHHHHHHHHHHHHHEEEE
T ss_pred             hhhhhhhHHHHHHHhcCCc
Confidence            9999999999999999886

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=97.77  E-value=1.7e-05  Score=62.44  Aligned_cols=83  Identities=13%  Similarity=0.230  Sum_probs=62.3

Q ss_pred             CCCceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc---CCCceEEecCCCCc-ccCcc--ceeeeehhccCCC
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH---NHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWD  195 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~---~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~  195 (214)
                      +...++|+|+  |..+..++.+.++ +      +..++.+..   ..+.++++.+|+.+ +.+.+  |++++.++||.++
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~  172 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLT  172 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSC
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccccc
Confidence            3456899997  5555666766554 2      334444432   34678999999875 33333  9999999999999


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      |++.+++|++|++.|+||
T Consensus       173 d~d~~~~l~~~~~~Lkpg  190 (254)
T d1xtpa_         173 DADFVKFFKHCQQALTPN  190 (254)
T ss_dssp             HHHHHHHHHHHHHHEEEE
T ss_pred             hhhhHHHHHHHHHhcCCC
Confidence            999999999999999986

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.48  E-value=8e-05  Score=56.73  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=58.5

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhc-----cCCCceEEecCCCCc-ccCcc--ceeeeehhccCC
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM-----HNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDW  194 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~-----~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw  194 (214)
                      +...++|+|+  |..+..++++.+++      +..++.+.     ...++++++.+|+.+ |+|.+  |+++...+||..
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~   94 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHF   94 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGC
T ss_pred             CcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccccccc
Confidence            3467999997  55555666666544      22333332     235789999999986 56654  999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|.+  ++|+++++.|+||
T Consensus        95 ~d~~--~~l~~~~r~Lkpg  111 (231)
T d1vl5a_          95 PNPA--SFVSEAYRVLKKG  111 (231)
T ss_dssp             SCHH--HHHHHHHHHEEEE
T ss_pred             CCHH--HHHHHHHHhcCCC
Confidence            8755  6799999999987

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.46  E-value=0.00011  Score=56.10  Aligned_cols=82  Identities=12%  Similarity=0.185  Sum_probs=62.1

Q ss_pred             CCceEEccC--CccHHHHHHh--CCCc--------hHHHHhhcc------CCCceEEecCCCCc-ccCccceeeeehhcc
Q 042599          132 SVPHTKAQS--GMDAFAAAAK--DARM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPNGQALFMKWILS  192 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~--~P~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~~d~y~l~~ILH  192 (214)
                      ...++|+|.  |..+..+++.  +|..        +..++.+..      ...++++..+|+.+ +.++.|++++..++|
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~  119 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ  119 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence            356999996  6666677764  3543        345554432      34578889999885 333579999999999


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+++++-.++|+++++.|+||
T Consensus       120 ~~~~~d~~~~l~~i~~~Lkpg  140 (225)
T d1im8a_         120 FLPPEDRIALLTKIYEGLNPN  140 (225)
T ss_dssp             GSCGGGHHHHHHHHHHHEEEE
T ss_pred             ccChhhHHHHHHHHHHhCCCC
Confidence            999999999999999999997

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.28  E-value=0.00021  Score=53.41  Aligned_cols=81  Identities=6%  Similarity=-0.033  Sum_probs=63.3

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhc-----cCCCceEEecCCCCcccCc-c-ceeeeehhccCCChH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM-----HNHTVVEHVSGHMFIEVPN-G-QALFMKWILSDWDDE  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~-----~~~~rv~~~~gDff~~~P~-~-d~y~l~~ILHdw~d~  197 (214)
                      ..++|+|+  |..+..++++.+++      +..++.+.     ...+.+++..+|+.+..|. . |+++...++|..+++
T Consensus        32 grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~~  111 (198)
T d2i6ga1          32 GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQ  111 (198)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGGSCTT
T ss_pred             CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeecCCHH
Confidence            36899996  77777788877654      23343322     2346799999999976564 3 999999999999999


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +..++|++++++|+||
T Consensus       112 ~~~~~l~~~~~~L~pg  127 (198)
T d2i6ga1         112 TIPGLIANMQRCTKPG  127 (198)
T ss_dssp             HHHHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999999999986

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.24  E-value=0.00028  Score=53.09  Aligned_cols=81  Identities=9%  Similarity=0.066  Sum_probs=60.1

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhc----cCCCceEEecCCCCc-ccCcc--ceeeeehhccCCChH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM----HNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDE  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~----~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~  197 (214)
                      ..++|+|.  |..+..+++....+      +..++.+.    .....+.++.+|..+ ++|.+  |++++..+||.++++
T Consensus        39 ~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~  118 (226)
T d1ve3a1          39 GKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPL  118 (226)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHH
T ss_pred             CEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCChh
Confidence            56899996  66666666654433      23333322    234568889999886 56643  999999999999999


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +..++|++|.+.|+||
T Consensus       119 d~~~~l~~i~~~Lkpg  134 (226)
T d1ve3a1         119 ELNQVFKEVRRVLKPS  134 (226)
T ss_dssp             HHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHcCcC
Confidence            9999999999999987

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.16  E-value=0.00031  Score=55.38  Aligned_cols=80  Identities=9%  Similarity=0.028  Sum_probs=58.1

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCc-ccCcc--ceeeeehhccC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFI-EVPNG--QALFMKWILSD  193 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHd  193 (214)
                      ...++|+|+  |..+..++++.. ++      +..++.+..      ..++|+++.+|+.+ |+|.+  |+++...+||.
T Consensus        68 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h  147 (282)
T d2o57a1          68 QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLH  147 (282)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGG
T ss_pred             CCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhh
Confidence            357999996  666666666543 22      223333221      24689999999986 66654  99999999999


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      ++|-+  ++|+++++.|+||
T Consensus       148 ~~d~~--~~l~~~~~~Lkpg  165 (282)
T d2o57a1         148 SPDKL--KVFQECARVLKPR  165 (282)
T ss_dssp             CSCHH--HHHHHHHHHEEEE
T ss_pred             ccCHH--HHHHHHHHhcCCC
Confidence            98764  6899999999987

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.04  E-value=0.00044  Score=52.84  Aligned_cols=80  Identities=10%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCc-ccCcc--ceeeeehhccCCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWD  195 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~  195 (214)
                      +..++|+|.  |..+..++++.+++      +..++.+..     ..+++.++.+|..+ |+|.+  |+++...++|..+
T Consensus        17 ~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~   96 (234)
T d1xxla_          17 EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFS   96 (234)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGCS
T ss_pred             CCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceeeccc
Confidence            356999996  66666777766544      233433322     24679999999985 56654  9999999999988


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      |  -.++|+++++.|+||
T Consensus        97 d--~~~~l~~~~r~Lkpg  112 (234)
T d1xxla_          97 D--VRKAVREVARVLKQD  112 (234)
T ss_dssp             C--HHHHHHHHHHHEEEE
T ss_pred             C--HHHHHHHHHHeeCCC
Confidence            7  468899999999987

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00066  Score=52.21  Aligned_cols=80  Identities=10%  Similarity=-0.166  Sum_probs=58.7

Q ss_pred             CCceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw  194 (214)
                      ...++|+|.  |..+..++++.+- .      +..++.+..      ..++|+++.+|+.+..|.  -|+++...++|.+
T Consensus        34 g~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  113 (245)
T d1nkva_          34 GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIA  113 (245)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCGGGT
T ss_pred             CCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEEEEehhhcc
Confidence            356999996  6666666666652 1      233333221      246899999999986664  3999999999999


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|-  .++|+++++.|+||
T Consensus       114 ~d~--~~~l~~~~r~LkPG  130 (245)
T d1nkva_         114 GGF--AGAEELLAQSLKPG  130 (245)
T ss_dssp             SSS--HHHHHHHTTSEEEE
T ss_pred             CCH--HHHHHHHHHHcCcC
Confidence            875  47899999999987

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=96.54  E-value=0.0016  Score=51.20  Aligned_cols=79  Identities=13%  Similarity=0.075  Sum_probs=57.2

Q ss_pred             CceEEccC--CccHHHHHHhCCCc---------hHHHHhhcc----CCCceEEecCCCCc-ccCcc-ceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM---------NNLFNQSMH----NHTVVEHVSGHMFI-EVPNG-QALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l---------~~v~~~~~~----~~~rv~~~~gDff~-~~P~~-d~y~l~~ILHdw~  195 (214)
                      ..++|+|.  |..+..+++..|.-         +..++.+..    ...+++++.+|+.+ +.|.. |+++..++||..+
T Consensus        29 ~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l~~~~  108 (281)
T d2gh1a1          29 VHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMT  108 (281)
T ss_dssp             CEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCGGGCS
T ss_pred             CEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhhhcCC
Confidence            45899996  55555666666641         234444332    23479999999986 34443 9999999999998


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      |.+  ++|+++++.|+||
T Consensus       109 d~~--~~l~~~~~~Lkpg  124 (281)
T d2gh1a1         109 TPE--TMLQKMIHSVKKG  124 (281)
T ss_dssp             SHH--HHHHHHHHTEEEE
T ss_pred             CHH--HHHHHHHHHcCcC
Confidence            865  6899999999987

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.43  E-value=0.0033  Score=46.48  Aligned_cols=81  Identities=9%  Similarity=0.034  Sum_probs=58.1

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhc-------cCCCceEEecCCCCcccCc--cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM-------HNHTVVEHVSGHMFIEVPN--GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~-------~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw  194 (214)
                      ...++|+|+  |..+..+++..|+.      +..++.+.       ....+++++.+|++++++.  -|++++.-.+|. 
T Consensus        53 ~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p~~~-  131 (194)
T d1dusa_          53 DDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRA-  131 (194)
T ss_dssp             TCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCSTT-
T ss_pred             CCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEEcccEEe-
Confidence            356899996  65666777777754      23333332       1235799999999987774  399998777764 


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      ..+...++|+++.+.|+||
T Consensus       132 ~~~~~~~~l~~~~~~Lkpg  150 (194)
T d1dusa_         132 GKEVLHRIIEEGKELLKDN  150 (194)
T ss_dssp             CHHHHHHHHHHHHHHEEEE
T ss_pred             cchhhhhHHHHHHHhcCcC
Confidence            4566778999999999886

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=96.42  E-value=0.007  Score=46.42  Aligned_cols=101  Identities=9%  Similarity=-0.015  Sum_probs=66.7

Q ss_pred             HhhHHhhhhhccHHHHHhcCCCceEEccC--CccHHHHHHhCCC-c------hHHHHhhc------cCCCceEEecCCCC
Q 042599          112 LEGFINTLNRYYLKNALLEGSVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSM------HNHTVVEHVSGHMF  176 (214)
Q Consensus       112 ~~~f~~~m~~~~~~~~~~~g~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~------~~~~rv~~~~gDff  176 (214)
                      .+.|+++...- +-+........++|+|.  |..+..+.+..+. +      +..++.+.      ....++.+..+|.+
T Consensus         6 ~r~~~N~vK~~-lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~   84 (252)
T d1ri5a_           6 IRNANNFIKAC-LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY   84 (252)
T ss_dssp             HHHHHHHHHHH-HHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT
T ss_pred             HHHHHHHHHHH-HHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchh
Confidence            45666665321 21112223357999995  6667777766553 2      23444442      22357999999998


Q ss_pred             c-ccC-c--cceeeeehhccCC--ChHHHHHHHHHhHHhcCCC
Q 042599          177 I-EVP-N--GQALFMKWILSDW--DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       177 ~-~~P-~--~d~y~l~~ILHdw--~d~~~~~IL~~~~~Al~pg  213 (214)
                      . +.+ .  -|+++...++|..  +.++..++|+++.+.|+||
T Consensus        85 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g  127 (252)
T d1ri5a_          85 GRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG  127 (252)
T ss_dssp             TSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred             hhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCC
Confidence            4 443 3  3999999999975  5578889999999999986

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.11  E-value=0.015  Score=43.51  Aligned_cols=84  Identities=11%  Similarity=0.079  Sum_probs=56.1

Q ss_pred             cCCCceEEccC--CccHHHHHHhCCCch--------HHHHhh----c-cCCCceEEecCCCCc---ccCcc--ceeeeeh
Q 042599          130 EGSVPHTKAQS--GMDAFAAAAKDARMN--------NLFNQS----M-HNHTVVEHVSGHMFI---EVPNG--QALFMKW  189 (214)
Q Consensus       130 ~g~~~~~dvgG--G~~~~~~~~~~P~l~--------~v~~~~----~-~~~~rv~~~~gDff~---~~P~~--d~y~l~~  189 (214)
                      ...+.++|+|.  |..+..+++++|+..        ..+..+    . ...++|.++.+|...   -+|.+  |.+++-.
T Consensus        28 ~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f  107 (204)
T d2fcaa1          28 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  107 (204)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence            33455799994  888889999999852        223222    1 235689999999764   36643  7766655


Q ss_pred             hccCCChHH------HHHHHHHhHHhcCCC
Q 042599          190 ILSDWDDEE------CLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~------~~~IL~~~~~Al~pg  213 (214)
                      ...-+....      ...+|+.+++.|+||
T Consensus       108 p~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg  137 (204)
T d2fcaa1         108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKG  137 (204)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred             ccccchhhhcchhhhHHHHHHHHHHhCCCC
Confidence            543333332      247899999999998

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.10  E-value=0.014  Score=43.73  Aligned_cols=87  Identities=9%  Similarity=0.113  Sum_probs=56.9

Q ss_pred             HHHhcCCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhc-----cCCCceEEecCCCCc---ccCcc--cee
Q 042599          126 NALLEGSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM-----HNHTVVEHVSGHMFI---EVPNG--QAL  185 (214)
Q Consensus       126 ~~~~~g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~-----~~~~rv~~~~gDff~---~~P~~--d~y  185 (214)
                      +......+.++|||.  |..+..+++.+|+.        ...+..+.     ...++|.++.+|..+   -+|.+  |.+
T Consensus        26 ~~f~~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i  105 (204)
T d1yzha1          26 DLFGNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRL  105 (204)
T ss_dssp             HHHTSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred             HHcCCCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehh
Confidence            333344456799994  88899999999986        22333332     235789999999653   35643  555


Q ss_pred             eeehhccCCChHH-------HHHHHHHhHHhcCCC
Q 042599          186 FMKWILSDWDDEE-------CLKILKNCCVQCNTG  213 (214)
Q Consensus       186 ~l~~ILHdw~d~~-------~~~IL~~~~~Al~pg  213 (214)
                      ++- ...-|+...       ....|+.+++.|+||
T Consensus       106 ~i~-fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg  139 (204)
T d1yzha1         106 YLN-FSDPWPKKRHEKRRLTYKTFLDTFKRILPEN  139 (204)
T ss_dssp             EEE-SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred             ccc-ccccccchhhhhhhhhHHHHHHHHHHhCCCC
Confidence            432 234466553       357899999999998

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.03  E-value=0.0011  Score=41.72  Aligned_cols=39  Identities=10%  Similarity=0.064  Sum_probs=34.7

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhc
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVS   67 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s   67 (214)
                      ||+.+|++...+.|+|..|+..|+++++     +    +++|.+++-.
T Consensus        26 ia~~~~~~~st~~rll~tL~~~g~l~~~-----~----~g~y~lG~~l   64 (75)
T d1mkma1          26 IAEKFNMSVSNAYKYMVVLEEKGFVLRK-----K----DKRYVPGYKL   64 (75)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHTTSEEEC-----T----TSCEEECTHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHCCCEEEC-----C----CCCEeecHHH
Confidence            8999999999999999999999999997     2    5789887753

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.97  E-value=0.0058  Score=46.46  Aligned_cols=81  Identities=14%  Similarity=0.215  Sum_probs=58.4

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCc-ccCc-cceeee-ehhccCCChH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPN-GQALFM-KWILSDWDDE  197 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~-~d~y~l-~~ILHdw~d~  197 (214)
                      ..++|+|.  |..+..++++..++      +..++.+..    ...+++++.+|+.+ +.|+ -|+++. ..++|-++.+
T Consensus        43 ~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~~~~  122 (251)
T d1wzna1          43 RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEE  122 (251)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGGSCHH
T ss_pred             CEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhhcCChH
Confidence            45999995  66667777765543      234444332    23479999999876 4444 387665 4677778888


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      +..+.|+++++.|+||
T Consensus       123 ~~~~~L~~~~~~Lkpg  138 (251)
T d1wzna1         123 DLRKLFSKVAEALKPG  138 (251)
T ss_dssp             HHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999999999987

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.91  E-value=0.0068  Score=46.16  Aligned_cols=81  Identities=7%  Similarity=-0.050  Sum_probs=57.8

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhc----cCCCceEEecCCCCcc-cCcc-ceee-eehhccCC-Ch
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM----HNHTVVEHVSGHMFIE-VPNG-QALF-MKWILSDW-DD  196 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~----~~~~rv~~~~gDff~~-~P~~-d~y~-l~~ILHdw-~d  196 (214)
                      ..++|+|.  |..+..++++.+++      +..++.+.    ....+|+++.+|+.+. +++- |+++ +.+++|-+ +.
T Consensus        39 ~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~  118 (246)
T d1y8ca_          39 DDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDS  118 (246)
T ss_dssp             TEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCCSH
T ss_pred             CeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeeccCCH
Confidence            45899995  88888888887754      23444332    2345799999999863 3443 8766 44566554 67


Q ss_pred             HHHHHHHHHhHHhcCCC
Q 042599          197 EECLKILKNCCVQCNTG  213 (214)
Q Consensus       197 ~~~~~IL~~~~~Al~pg  213 (214)
                      ++-.++|+++++.|+||
T Consensus       119 ~~~~~~l~~~~~~Lkpg  135 (246)
T d1y8ca_         119 DDLKKYFKAVSNHLKEG  135 (246)
T ss_dssp             HHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            88899999999999986

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0074  Score=45.64  Aligned_cols=81  Identities=5%  Similarity=-0.083  Sum_probs=60.2

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhc----------------------cCCCceEEecCCCCcccC--
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM----------------------HNHTVVEHVSGHMFIEVP--  180 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~----------------------~~~~rv~~~~gDff~~~P--  180 (214)
                      ..++|+|.  |..+..++++--+.      +..++.+.                      ....++++..+|+|+-.|  
T Consensus        47 ~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~  126 (229)
T d2bzga1          47 LRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTN  126 (229)
T ss_dssp             CEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSC
T ss_pred             CEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccc
Confidence            56999995  77777776654332      23333221                      123579999999997433  


Q ss_pred             cc--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          181 NG--QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       181 ~~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+  |+++-+.++|..+.++-.+.++++++.|+||
T Consensus       127 ~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg  161 (229)
T d2bzga1         127 IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK  161 (229)
T ss_dssp             CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred             cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc
Confidence            33  9999999999999999999999999999997

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.82  E-value=0.0032  Score=46.81  Aligned_cols=47  Identities=19%  Similarity=0.229  Sum_probs=40.5

Q ss_pred             ceEEecCCCCcccC--cc--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          167 VVEHVSGHMFIEVP--NG--QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       167 rv~~~~gDff~~~P--~~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .|.+..++..++.|  .+  |++++++||+-++++...++|++++++|+||
T Consensus       114 ~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pG  164 (193)
T d1af7a2         114 YVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD  164 (193)
T ss_dssp             TEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred             HHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCC
Confidence            47778888886433  33  9999999999999999999999999999997

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=95.80  E-value=0.0071  Score=45.57  Aligned_cols=79  Identities=10%  Similarity=0.014  Sum_probs=55.2

Q ss_pred             CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-CCCceEEecCCCCcccC-c-cceeeeehhccCCChHHHHH
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-NHTVVEHVSGHMFIEVP-N-GQALFMKWILSDWDDEECLK  201 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-~~~rv~~~~gDff~~~P-~-~d~y~l~~ILHdw~d~~~~~  201 (214)
                      ..++|+|+  |..+..++++..+.      +..++.+.. ....++++.+|+-+..+ + -|++++..+||..+|.  .+
T Consensus        22 ~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d~--~~   99 (225)
T d2p7ia1          22 GNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP--VA   99 (225)
T ss_dssp             SCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH--HH
T ss_pred             CcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCCH--HH
Confidence            46999996  66666666665544      334444432 23579999999876433 3 3999999999998775  56


Q ss_pred             HHHHhH-HhcCCC
Q 042599          202 ILKNCC-VQCNTG  213 (214)
Q Consensus       202 IL~~~~-~Al~pg  213 (214)
                      +|++++ ..|+||
T Consensus       100 ~l~~i~~~~Lk~g  112 (225)
T d2p7ia1         100 LLKRINDDWLAEG  112 (225)
T ss_dssp             HHHHHHHTTEEEE
T ss_pred             HHHHHHHHhcCCC
Confidence            788887 567775

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.011  Score=47.48  Aligned_cols=79  Identities=16%  Similarity=0.097  Sum_probs=54.0

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhc--------------cCCCceEEecCCCCcc-cC----cc
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM--------------HNHTVVEHVSGHMFIE-VP----NG  182 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~--------------~~~~rv~~~~gDff~~-~P----~~  182 (214)
                      ...++|+|.  |..+..+++..|..        +..++.+.              .....|+++.|||.+. ..    .+
T Consensus       152 ~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~a  231 (328)
T d1nw3a_         152 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANT  231 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHHHC
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccCcc
Confidence            467999995  77777777777742        12222221              1246799999999863 22    36


Q ss_pred             ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          183 QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       183 d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |++++.+.+|+   .+-.+.|+++.+.|+||
T Consensus       232 dvi~~~~~~f~---~~~~~~l~e~~r~LKpG  259 (328)
T d1nw3a_         232 SVIFVNNFAFG---PEVDHQLKERFANMKEG  259 (328)
T ss_dssp             SEEEECCTTTC---HHHHHHHHHHHTTCCTT
T ss_pred             eEEEEcceecc---hHHHHHHHHHHHhCCCC
Confidence            88888777653   45567789999999998

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=95.53  E-value=0.012  Score=42.44  Aligned_cols=83  Identities=6%  Similarity=-0.014  Sum_probs=59.7

Q ss_pred             CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----------------CCCceEEecCCCCcccC--c--
Q 042599          131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----------------NHTVVEHVSGHMFIEVP--N--  181 (214)
Q Consensus       131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----------------~~~rv~~~~gDff~~~P--~--  181 (214)
                      .+..++|+|.  |..+..++++--+.      +..++.+..                 ....+++..+|+++.-|  .  
T Consensus        20 ~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~   99 (201)
T d1pjza_          20 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH   99 (201)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred             CCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccc
Confidence            3467999996  76666666653222      222332221                 13457899999997544  2  


Q ss_pred             cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          182 GQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       182 ~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      -|+++.+.++|-.++++....++++++.|+||
T Consensus       100 ~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg  131 (201)
T d1pjza_         100 CAAFYDRAAMIALPADMRERYVQHLEALMPQA  131 (201)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred             eeEEEEEeeeEecchhhhHHHHHHHHHhcCCC
Confidence            29999999999999999999999999999997

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.011  Score=45.84  Aligned_cols=73  Identities=8%  Similarity=0.035  Sum_probs=52.9

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhccCCCceEEecCCCCc-ccCcc--ceeeeehhccCCChHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDEE  198 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~~  198 (214)
                      ...++|+|.  |..+..+++..|+.        +..++.+....++++++.+|..+ |+|.+  |+++....+|.     
T Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-----  159 (268)
T d1p91a_          85 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-----  159 (268)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC-----
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH-----
Confidence            356899995  77778888888864        34455555556789999999986 56643  99988887776     


Q ss_pred             HHHHHHHhHHhcCCC
Q 042599          199 CLKILKNCCVQCNTG  213 (214)
Q Consensus       199 ~~~IL~~~~~Al~pg  213 (214)
                          ++.+++.|+||
T Consensus       160 ----~~e~~rvLkpg  170 (268)
T d1p91a_         160 ----AEELARVVKPG  170 (268)
T ss_dssp             ----HHHHHHHEEEE
T ss_pred             ----HHHHHHHhCCC
Confidence                34556667665

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=95.40  E-value=0.0077  Score=44.50  Aligned_cols=78  Identities=14%  Similarity=-0.003  Sum_probs=53.6

Q ss_pred             CCceEEccC--CccHHHHHHhCC-Cc-hHHHHhhccCCCceEEecCCCCc-ccCcc--ceeeeehhccCCChHHHHHHHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDA-RM-NNLFNQSMHNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDEECLKILK  204 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P-~l-~~v~~~~~~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~~~~~IL~  204 (214)
                      ...++|+|.  |..+..+.+..- |+ +..++.+..  ..++++.+|+.+ +.|..  |++++..+||..+|  ..++|+
T Consensus        37 ~~~vLDiGcG~G~~~~~~~~~~giD~s~~~~~~a~~--~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d--~~~~l~  112 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARK--RGVFVLKGTAENLPLKDESFDFALMVTTICFVDD--PERALK  112 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHH--TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--HHHHHH
T ss_pred             CCeEEEECCCCcccccccceEEEEeCChhhcccccc--cccccccccccccccccccccccccccccccccc--cccchh
Confidence            356999996  555544432210 11 233443333  368999999985 45543  99999999999987  457899


Q ss_pred             HhHHhcCCC
Q 042599          205 NCCVQCNTG  213 (214)
Q Consensus       205 ~~~~Al~pg  213 (214)
                      ++++.|+||
T Consensus       113 ~~~~~L~pg  121 (208)
T d1vlma_         113 EAYRILKKG  121 (208)
T ss_dssp             HHHHHEEEE
T ss_pred             hhhhcCCCC
Confidence            999999986

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=94.29  E-value=0.015  Score=43.60  Aligned_cols=79  Identities=11%  Similarity=0.111  Sum_probs=51.4

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCcc--ceee-eehhccCCChHHH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPNG--QALF-MKWILSDWDDEEC  199 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~~--d~y~-l~~ILHdw~d~~~  199 (214)
                      ...++|+|.  |..+..+++..-++      +..++.+.... ...++.+|+.+ ++|.+  |+++ +..++|..+|.+ 
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~-~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~-  120 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKG-VKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKD-  120 (246)
T ss_dssp             CCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHT-CSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHH-
T ss_pred             CCEEEEECCCCchhcccccccceEEEEeeccccccccccccc-ccccccccccccccccccccceeeecchhhhhhhHH-
Confidence            356899996  66666666554332      33444444321 12355677764 45543  9877 578999888765 


Q ss_pred             HHHHHHhHHhcCCC
Q 042599          200 LKILKNCCVQCNTG  213 (214)
Q Consensus       200 ~~IL~~~~~Al~pg  213 (214)
                       ++|+++++.|+||
T Consensus       121 -~~l~~i~r~Lk~g  133 (246)
T d2avna1         121 -KAFSEIRRVLVPD  133 (246)
T ss_dssp             -HHHHHHHHHEEEE
T ss_pred             -HHHHHHHhhcCcC
Confidence             5899999999986

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=93.38  E-value=0.013  Score=45.18  Aligned_cols=42  Identities=14%  Similarity=0.148  Sum_probs=37.6

Q ss_pred             ccHHHHHhcCCCceEEccCCccHHHHHHhCCCchHHHHhhccC
Q 042599          122 YYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHN  164 (214)
Q Consensus       122 ~~~~~~~~~g~~~~~dvgGG~~~~~~~~~~P~l~~v~~~~~~~  164 (214)
                      .++.+++++|.+.|.-.. |..+|++..++|+....|+++|..
T Consensus        23 ~~L~~~~rtG~~~~~~~~-G~~~~e~~~~~p~~~~~f~~~m~~   64 (256)
T d1qzza2          23 TGLLDVVRTGRPAYAGRY-GRPFWEDLSADVALADSFDALMSC   64 (256)
T ss_dssp             GGHHHHHHHSCCSHHHHH-SSCHHHHHHHCHHHHHHHHHTCGG
T ss_pred             HHHHHHHHhCCchhhhhh-CCCHHHHHHhCHHHHHHHHHHHHh
Confidence            789999999998887777 889999999999999999999874

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.06  E-value=0.36  Score=36.19  Aligned_cols=79  Identities=9%  Similarity=-0.000  Sum_probs=54.1

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhc---cCCCceEEecCCCCcccC--c--cceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM---HNHTVVEHVSGHMFIEVP--N--GQALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~---~~~~rv~~~~gDff~~~P--~--~d~y~l~~ILHdw~  195 (214)
                      ..++|+|.  |..+..+++..|+-        +..+.++.   ...+.+..+-+|-..+.+  .  .|+.++.+.+|.++
T Consensus        76 ~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~  155 (230)
T d1g8sa_          76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPN  155 (230)
T ss_dssp             CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTT
T ss_pred             CEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccchH
Confidence            56899996  77777788777752        33343332   234678888888776433  2  37777777787664


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                        +...++++++..|+||
T Consensus       156 --~~~~~l~~~~r~LKpg  171 (230)
T d1g8sa_         156 --QAEILIKNAKWFLKKG  171 (230)
T ss_dssp             --HHHHHHHHHHHHEEEE
T ss_pred             --HHHHHHHHHHHhcccC
Confidence              4566799999999986

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.43  E-value=0.34  Score=37.45  Aligned_cols=81  Identities=7%  Similarity=-0.011  Sum_probs=55.6

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc-------hHHHHhhc------cCCCceEEecCCCCcccCc-cceeeeehhccCCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSM------HNHTVVEHVSGHMFIEVPN-GQALFMKWILSDWD  195 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~------~~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~  195 (214)
                      ...++|+|.  |..+..++++++.-       +..++.+.      ....++.+...|+-+ .|. =|.++.-.+++..+
T Consensus        53 g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-~~~~fD~i~si~~~eh~~  131 (280)
T d2fk8a1          53 GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPVDRIVSIEAFEHFG  131 (280)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCCSEEEEESCGGGTC
T ss_pred             CCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-hccchhhhhHhhHHHHhh
Confidence            356999996  55555555555531       11222211      124567887777654 353 49999999999999


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      ++.-...+++|++.|+||
T Consensus       132 ~~~~~~~f~~i~~~Lkpg  149 (280)
T d2fk8a1         132 HENYDDFFKRCFNIMPAD  149 (280)
T ss_dssp             GGGHHHHHHHHHHHSCTT
T ss_pred             hhhHHHHHHHHHhccCCC
Confidence            998899999999999998

>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.43  E-value=0.032  Score=36.04  Aligned_cols=43  Identities=9%  Similarity=0.184  Sum_probs=37.7

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP   72 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~   72 (214)
                      |...++++...+.+.|..|...|++++.          .+.|..|+-+..++.
T Consensus        24 i~~~aNLs~~~~~kyl~~L~~~GLI~~~----------~~~Y~iT~kG~~~L~   66 (90)
T d1r7ja_          24 IMYGANLSYALTGRYIKMLMDLEIIRQE----------GKQYMLTKKGEELLE   66 (90)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHCCCeeec----------CCEEEECccHHHHHH
Confidence            5556889999999999999999999875          689999999987764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.07  E-value=0.4  Score=39.19  Aligned_cols=78  Identities=15%  Similarity=0.151  Sum_probs=50.1

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc--------------CCCceEE-ecCCCCcc------cCc
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH--------------NHTVVEH-VSGHMFIE------VPN  181 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~--------------~~~rv~~-~~gDff~~------~P~  181 (214)
                      ..|+|+|.  |..+..++..+|.-        +..++.+..              ....+.+ ..+||++.      ++.
T Consensus       218 d~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~  297 (406)
T d1u2za_         218 DTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQ  297 (406)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGG
T ss_pred             CEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccccccc
Confidence            56999995  77788888877731        222332211              1122333 56777742      334


Q ss_pred             cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          182 GQALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       182 ~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +|++++-+.+|   +++-.+.|+++.+.|+||
T Consensus       298 adVV~inn~~f---~~~l~~~L~ei~r~LKPG  326 (406)
T d1u2za_         298 CDVILVNNFLF---DEDLNKKVEKILQTAKVG  326 (406)
T ss_dssp             CSEEEECCTTC---CHHHHHHHHHHHTTCCTT
T ss_pred             ceEEEEecccC---chHHHHHHHHHHHhcCCC
Confidence            68888876655   356678889999999998

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.59  E-value=0.1  Score=37.65  Aligned_cols=77  Identities=10%  Similarity=-0.012  Sum_probs=50.6

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc------CCCceEEecCCCCcccC---ccceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH------NHTVVEHVSGHMFIEVP---NGQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~------~~~rv~~~~gDff~~~P---~~d~y~l~~ILHdw  194 (214)
                      ...++|+|.  |..+.++++..+++      +..++.+..      ..++|+++.+|..+..+   ..|++++....|++
T Consensus        34 g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~~~  113 (186)
T d1l3ia_          34 NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL  113 (186)
T ss_dssp             TCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTTCH
T ss_pred             CCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccccc
Confidence            356899996  55566666666543      233333322      23699999999886432   35888876544443


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                           ..+++.+.+.|+||
T Consensus       114 -----~~~~~~~~~~Lkpg  127 (186)
T d1l3ia_         114 -----QEILRIIKDKLKPG  127 (186)
T ss_dssp             -----HHHHHHHHHTEEEE
T ss_pred             -----hHHHHHHHHHhCcC
Confidence                 56889999988876

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=89.33  E-value=0.2  Score=38.25  Aligned_cols=74  Identities=9%  Similarity=0.113  Sum_probs=47.9

Q ss_pred             CceEEccC--CccHHHHHHh-CCC--c------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeeehhccC
Q 042599          133 VPHTKAQS--GMDAFAAAAK-DAR--M------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMKWILSD  193 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~-~P~--l------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~~ILHd  193 (214)
                      ..++|+|.  |..+..+++. .|+  +      +..++.+..      ...+|++..+|+.+.+|.  -|++++ ++...
T Consensus        87 ~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~l-d~p~p  165 (250)
T d1yb2a1          87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIA-DIPDP  165 (250)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEE-CCSCG
T ss_pred             CEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeee-cCCch
Confidence            56899996  5444455543 453  2      223333321      346899999999988775  388876 34433


Q ss_pred             CChHHHHHHHHHhHHhcCCC
Q 042599          194 WDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       194 w~d~~~~~IL~~~~~Al~pg  213 (214)
                      |      ..|+++.++|+||
T Consensus       166 ~------~~l~~~~~~LKpG  179 (250)
T d1yb2a1         166 W------NHVQKIASMMKPG  179 (250)
T ss_dssp             G------GSHHHHHHTEEEE
T ss_pred             H------HHHHHHHHhcCCC
Confidence            4      5689999999987

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=89.07  E-value=0.046  Score=41.64  Aligned_cols=41  Identities=46%  Similarity=0.815  Sum_probs=36.8

Q ss_pred             ccHHHHHhcCCCceEEccCCccHHHHHHhCCCchHHHHhhcc
Q 042599          122 YYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMH  163 (214)
Q Consensus       122 ~~~~~~~~~g~~~~~dvgGG~~~~~~~~~~P~l~~v~~~~~~  163 (214)
                      .++.+++++|+++|..+. |..+|++..++|+....|+++|.
T Consensus        22 ~~L~~avrtG~~~f~~~~-G~~~~~~~~~~p~~~~~F~~aM~   62 (243)
T d1kyza2          22 YHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMS   62 (243)
T ss_dssp             GGHHHHHHHCSCHHHHHH-SSCHHHHGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCHHHhhc-CCCHHHHHHhCHHHHHHHHHHHh
Confidence            678999999999998888 89999999999999888888775

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=87.62  E-value=0.25  Score=37.75  Aligned_cols=77  Identities=14%  Similarity=0.055  Sum_probs=48.2

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhhc----cCCCceEEecCCCCcccCc--cceeeeehhccCCChH
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM----HNHTVVEHVSGHMFIEVPN--GQALFMKWILSDWDDE  197 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~----~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d~  197 (214)
                      ...++|+|.  |..+..+++..+..      +..++.+.    ...-.++++.+|+.+..|.  -|+++..     +..+
T Consensus       121 g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~an-----i~~~  195 (254)
T d2nxca1         121 GDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVAN-----LYAE  195 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEE-----CCHH
T ss_pred             cCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhc-----cccc
Confidence            357999996  55555544443322      22232222    2333578889998877774  3877642     3445


Q ss_pred             HHHHHHHHhHHhcCCC
Q 042599          198 ECLKILKNCCVQCNTG  213 (214)
Q Consensus       198 ~~~~IL~~~~~Al~pg  213 (214)
                      .-.++++.+++.|+||
T Consensus       196 ~l~~l~~~~~~~LkpG  211 (254)
T d2nxca1         196 LHAALAPRYREALVPG  211 (254)
T ss_dssp             HHHHHHHHHHHHEEEE
T ss_pred             cHHHHHHHHHHhcCCC
Confidence            6678899999999986

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.89  E-value=0.25  Score=37.70  Aligned_cols=29  Identities=21%  Similarity=0.007  Sum_probs=26.2

Q ss_pred             ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599          183 QALFMKWILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       183 d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      |+++..++||.++|-  .+.|+++++.|+||
T Consensus       125 D~I~~~~~l~~~~d~--~~~l~~l~~~Lkpg  153 (280)
T d1jqea_         125 DFIHMIQMLYYVKDI--PATLKFFHSLLGTN  153 (280)
T ss_dssp             EEEEEESCGGGCSCH--HHHHHHHHHTEEEE
T ss_pred             eEEEEccceecCCCH--HHHHHHHHhhCCCC
Confidence            999999999999875  47899999999986

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.83  E-value=0.18  Score=32.51  Aligned_cols=59  Identities=17%  Similarity=0.253  Sum_probs=43.3

Q ss_pred             HHHHhCchhHH----------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599            9 TAIQLGVLEIM----------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF   70 (214)
Q Consensus         9 ~a~~lgifd~L----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l   70 (214)
                      .-.++.|...|          ||+.++++...+.+.|+.|...|+++.....  .+ ...-.|++|+.++..
T Consensus        15 ~p~r~~IL~~L~~~~~~~~~eLa~~l~is~~~vs~~l~~L~~~glV~~~~~~--~d-~r~~~~~LT~~G~~~   83 (100)
T d1ub9a_          15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI--AD-RPRTVVEITDFGMEE   83 (100)
T ss_dssp             SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC--SS-SCEEEEEECHHHHHH
T ss_pred             CHHHHHHHHHhccCCCeeHHHHHHHHhhccccccHHHHHHhhhceeEEEEcC--cC-CccccccCCHHHHHH
Confidence            34466677777          9999999999999999999999999875321  10 012358899887643

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.79  E-value=0.37  Score=35.71  Aligned_cols=79  Identities=10%  Similarity=0.035  Sum_probs=49.8

Q ss_pred             CceEEccC--CccHHHHHHhCCCc-------hHHHHhhc----cCCCceEEecCCCC---cccCcc--ceee-----eeh
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSM----HNHTVVEHVSGHMF---IEVPNG--QALF-----MKW  189 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~----~~~~rv~~~~gDff---~~~P~~--d~y~-----l~~  189 (214)
                      ..++|||.  |..+..+++..|.-       +.+++.+.    ....++..+.+|..   .++|.+  |.++     ...
T Consensus        55 ~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~  134 (229)
T d1zx0a1          55 GRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSE  134 (229)
T ss_dssp             EEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBG
T ss_pred             CeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccccc
Confidence            46899996  55555666655531       34454443    23456777777754   356643  5544     566


Q ss_pred             hccCCChHHHHHHHHHhHHhcCCC
Q 042599          190 ILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                      .++.+.|  -...++++++.|+||
T Consensus       135 ~~~~~~~--~~~~~~~~~r~LkpG  156 (229)
T d1zx0a1         135 ETWHTHQ--FNFIKNHAFRLLKPG  156 (229)
T ss_dssp             GGTTTHH--HHHHHHTHHHHEEEE
T ss_pred             ccccccC--HHHHHHHHHHHcCCC
Confidence            6666654  456899999999987

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=86.41  E-value=0.14  Score=30.51  Aligned_cols=28  Identities=18%  Similarity=0.175  Sum_probs=26.9

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCN   47 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~   47 (214)
                      ||+.+|+++..++.+|+.|+..|.+...
T Consensus        29 l~~~l~~~e~~~~~lL~~l~~~G~lvkI   56 (64)
T d1lvaa3          29 VAGSFNLDPSELEELLHYLVREGVLVKI   56 (64)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHTTSEEES
T ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence            8889999999999999999999999997

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.91  E-value=0.87  Score=35.13  Aligned_cols=81  Identities=9%  Similarity=-0.047  Sum_probs=50.6

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc-------hHHHHhh------ccCCCceEEecCCCCcccCc-cceeeeehhccCCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQS------MHNHTVVEHVSGHMFIEVPN-GQALFMKWILSDWD  195 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~------~~~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~  195 (214)
                      +..++|+|.  |..+..++++++--       +.-++.+      ....++|++..+|+-+ .|. -|.++--..+....
T Consensus        63 G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~fD~i~si~~~eh~~  141 (285)
T d1kpga_          63 GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPVDRIVSIGAFEHFG  141 (285)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCCSEEEEESCGGGTC
T ss_pred             CCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-ccccccceeeehhhhhcC
Confidence            366999996  66677777777521       1112111      1235789999999854 343 35444333333355


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                      ...-...+++|.+.|+||
T Consensus       142 ~~~~~~~~~~~~r~Lkpg  159 (285)
T d1kpga_         142 HERYDAFFSLAHRLLPAD  159 (285)
T ss_dssp             TTTHHHHHHHHHHHSCTT
T ss_pred             chhHHHHHHHHHhhcCCC
Confidence            555567899999999997

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=85.57  E-value=0.14  Score=38.78  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=37.9

Q ss_pred             ccHHHHHhcCCCceEEccCCccHHHHHHhCCCchHHHHhhccCC
Q 042599          122 YYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMHNH  165 (214)
Q Consensus       122 ~~~~~~~~~g~~~~~dvgGG~~~~~~~~~~P~l~~v~~~~~~~~  165 (214)
                      .++.+++++|.+++.... |..+|+++.++|+....|+.+|...
T Consensus        22 ~~L~~~vr~G~~~~~~~~-G~~~~~~~~~~~~~~~~f~~~m~~~   64 (253)
T d1tw3a2          22 TRLPDAIRTGRPTYESIY-GKPFYEDLAGRPDLRASFDSLLACD   64 (253)
T ss_dssp             GGHHHHHHHCCCCHHHHH-SSCHHHHHHTCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhCCchhhhcc-CCCHHHHHhhCHHHHHHHHHHHHHh
Confidence            789999999998887777 8899999999999999999988653

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=85.44  E-value=0.15  Score=30.86  Aligned_cols=28  Identities=18%  Similarity=0.303  Sum_probs=26.9

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCN   47 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~   47 (214)
                      ||+.+|+++..+.++++.|...|++.+.
T Consensus        26 La~~~glS~~Tv~~~l~~L~~~Glv~e~   53 (71)
T d1z05a1          26 LSKESELAPASITKITRELIDAHLIHET   53 (71)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence            9999999999999999999999999875

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.94  E-value=1.1  Score=34.81  Aligned_cols=81  Identities=16%  Similarity=0.109  Sum_probs=49.8

Q ss_pred             CceEEccCCc--cHHHHHHhCCCc------hHHHH---h---hccCCCceEEecCCCCc-ccCc--cceeeeehhccCC-
Q 042599          133 VPHTKAQSGM--DAFAAAAKDARM------NNLFN---Q---SMHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDW-  194 (214)
Q Consensus       133 ~~~~dvgGG~--~~~~~~~~~P~l------~~v~~---~---~~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw-  194 (214)
                      ..++|+|.|.  .+..++++-+..      .....   +   .....++|+++.+|..+ +.|.  .|+++.-.+.|.. 
T Consensus        35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~  114 (316)
T d1oria_          35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLF  114 (316)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBT
T ss_pred             CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeeec
Confidence            5689999744  444444443321      11111   1   11235789999999986 5563  4888776666653 


Q ss_pred             ChHHHHHHHHHhHHhcCCC
Q 042599          195 DDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~d~~~~~IL~~~~~Al~pg  213 (214)
                      .+.....+|..+.+-|+||
T Consensus       115 ~e~~~~~~l~~~~r~Lkp~  133 (316)
T d1oria_         115 YESMLNTVLHARDKWLAPD  133 (316)
T ss_dssp             BTCCHHHHHHHHHHHEEEE
T ss_pred             cHHHHHHHHHHHHhcCCCC
Confidence            3445677888888888886

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.51  E-value=1.4  Score=32.09  Aligned_cols=79  Identities=6%  Similarity=-0.103  Sum_probs=49.4

Q ss_pred             CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---CCCceEEecCCCCcc-cCcc---ceeeeehhccCCC
Q 042599          133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---NHTVVEHVSGHMFIE-VPNG---QALFMKWILSDWD  195 (214)
Q Consensus       133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---~~~rv~~~~gDff~~-~P~~---d~y~l~~ILHdw~  195 (214)
                      ..++|+|.  |..+..+.+..|+-        +..++.+..   ..+.++++.+|...+ .+..   .+.++-+.++.+.
T Consensus        58 ~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~  137 (209)
T d1nt2a_          58 ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKN  137 (209)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTT
T ss_pred             CEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecccChh
Confidence            56899995  77777777777752        344443322   246899999998753 4421   2322223333333


Q ss_pred             hHHHHHHHHHhHHhcCCC
Q 042599          196 DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       196 d~~~~~IL~~~~~Al~pg  213 (214)
                        +...+|+++.+.|+||
T Consensus       138 --~~~~~l~~~~~~Lkpg  153 (209)
T d1nt2a_         138 --QIEILKANAEFFLKEK  153 (209)
T ss_dssp             --HHHHHHHHHHHHEEEE
T ss_pred             --hHHHHHHHHHHHhccC
Confidence              4457899999999986

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=83.84  E-value=0.77  Score=35.32  Aligned_cols=82  Identities=9%  Similarity=0.030  Sum_probs=50.4

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc--cceeeee------
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN--GQALFMK------  188 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~--~d~y~l~------  188 (214)
                      ...++|+|.  |-.+..++..+|+.        +..++.+..     ..++|+++.+|+|+++|.  -|+++--      
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi~~  188 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYIDE  188 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBCT
T ss_pred             ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhhhh
Confidence            345899996  55555678888975        233333322     235899999999998884  3765421      


Q ss_pred             -------hhc-cCCC-----h----HHHHHHHHHhHHhcCCC
Q 042599          189 -------WIL-SDWD-----D----EECLKILKNCCVQCNTG  213 (214)
Q Consensus       189 -------~IL-Hdw~-----d----~~~~~IL~~~~~Al~pg  213 (214)
                             .++ |...     .    +...+|++++.+.|+||
T Consensus       189 ~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~  230 (274)
T d2b3ta1         189 QDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG  230 (274)
T ss_dssp             TCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred             hhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCC
Confidence                   122 1111     1    34567888887777664

>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein ywnA
species: Bacillus subtilis [TaxId: 1423]

Probab=82.57  E-value=0.2  Score=33.95  Aligned_cols=28  Identities=25%  Similarity=0.528  Sum_probs=26.7

Q ss_pred             cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599           20 LPKNNKETPIILDRMLRLLASYSFLTCN   47 (214)
Q Consensus        20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~   47 (214)
                      ||+.+++++..+++||+.|...|+++-.
T Consensus        24 IA~~~~~~~~~v~kIl~~L~~aglV~s~   51 (127)
T d1xd7a_          24 IADSVNTNPVVVRRMISLLKKADILTSR   51 (127)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred             HHHHhCcCHHHHHHHHHHHHHhCccccc
Confidence            9999999999999999999999999865

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.99  E-value=0.74  Score=35.23  Aligned_cols=75  Identities=12%  Similarity=0.107  Sum_probs=47.6

Q ss_pred             CCceEEccC--CccHHHHHHh-CCC-------c-hHHHHhhc--------cCCCceEEecCCCCc-ccCcc--ceeeeeh
Q 042599          132 SVPHTKAQS--GMDAFAAAAK-DAR-------M-NNLFNQSM--------HNHTVVEHVSGHMFI-EVPNG--QALFMKW  189 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~-~P~-------l-~~v~~~~~--------~~~~rv~~~~gDff~-~~P~~--d~y~l~~  189 (214)
                      ...++|+|.  |.....+++. .|+       . ++.++.+.        ...++++++.+|+.+ ++|.+  |++++  
T Consensus        97 G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l--  174 (264)
T d1i9ga_          97 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL--  174 (264)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE--
T ss_pred             CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEE--
Confidence            356899996  5555556554 453       1 22333322        124689999999986 57753  98876  


Q ss_pred             hccCCChHHHHHHHHHhHHhcCCC
Q 042599          190 ILSDWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       190 ILHdw~d~~~~~IL~~~~~Al~pg  213 (214)
                         |-+|.  -..|.+++++|+||
T Consensus       175 ---dlp~P--~~~l~~~~~~LkpG  193 (264)
T d1i9ga_         175 ---DMLAP--WEVLDAVSRLLVAG  193 (264)
T ss_dssp             ---ESSCG--GGGHHHHHHHEEEE
T ss_pred             ---ecCCH--HHHHHHHHhccCCC
Confidence               22332  25688889999886

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.56  E-value=1.1  Score=32.78  Aligned_cols=74  Identities=14%  Similarity=0.183  Sum_probs=47.2

Q ss_pred             CCceEEccC--CccHHHHHHhC-CC--c------hHHHHhhcc-----CCCceEEecCCCCcccC-cc--ceeeeehhcc
Q 042599          132 SVPHTKAQS--GMDAFAAAAKD-AR--M------NNLFNQSMH-----NHTVVEHVSGHMFIEVP-NG--QALFMKWILS  192 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~-P~--l------~~v~~~~~~-----~~~rv~~~~gDff~~~P-~~--d~y~l~~ILH  192 (214)
                      ...++|+|.  |..+..+++.. |.  +      +..++.+..     ...++.++.+|..+..| .+  |++++...+|
T Consensus        76 g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~  155 (213)
T d1dl5a1          76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVD  155 (213)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred             cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhccHH
Confidence            357999997  44444454443 32  1      334443322     35688999999987655 34  9999999999


Q ss_pred             CCChHHHHHHHHHhHHhcCCC
Q 042599          193 DWDDEECLKILKNCCVQCNTG  213 (214)
Q Consensus       193 dw~d~~~~~IL~~~~~Al~pg  213 (214)
                      +-+++        +.+.|+||
T Consensus       156 ~~p~~--------l~~~LkpG  168 (213)
T d1dl5a1         156 EVPET--------WFTQLKEG  168 (213)
T ss_dssp             CCCHH--------HHHHEEEE
T ss_pred             HhHHH--------HHHhcCCC
Confidence            88763        34456665

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.03  E-value=3.8  Score=31.60  Aligned_cols=82  Identities=11%  Similarity=0.054  Sum_probs=47.9

Q ss_pred             CCceEEccC--CccHHHHHHhCCCc------hHHHHhh------ccCCCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599          132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQS------MHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDW  194 (214)
Q Consensus       132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~------~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw  194 (214)
                      +..++|+|.  |..+..++++-...      ......+      .....+|+++.+|+.+ ++|.  .|+++...+.|..
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~  118 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL  118 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTB
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceee
Confidence            357899996  44444444433321      1111111      1235689999999986 5663  5888766555543


Q ss_pred             C-hHHHHHHHHHhHHhcCCC
Q 042599          195 D-DEECLKILKNCCVQCNTG  213 (214)
Q Consensus       195 ~-d~~~~~IL~~~~~Al~pg  213 (214)
                      . +..-..++..+.+.|+||
T Consensus       119 ~~e~~~~~~~~a~~r~Lkpg  138 (328)
T d1g6q1_         119 LYESMMDTVLYARDHYLVEG  138 (328)
T ss_dssp             STTCCHHHHHHHHHHHEEEE
T ss_pred             ccchhHHHHHHHHHhccCCC
Confidence            3 334455676677778776