Citrus Sinensis ID: 042636

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
VAKVHRGLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILDQIVVVMLLLTCFEFE
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEccHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHcccccccEEEEEccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEcccccccccccccccccccEEEEcccccccEEEEcccccccccEEEEcccccccEEEEccccccccccEEEEcccccccccHHHHHHHHHHHEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHEEEEEcccHHHHHHHHHHHHHHHcEEEEEcccHHHHHHHHHHcccccEEEEEEccccccccHHccccccHHHHEEEEcccHHHccHHHHccHccEEEEEEcccccccHHHHHHHcccHHEEEEHHcccccEEEEccccccccEEEEEcccccccEEEEEcccccccEEEEEEcccHHHcccccHHHHHHHcEEEEEEccccccc
Coil and Loop (DISEMBL)
vakvhrglgslmdlqKLSIIEADSQVLKELMKLRQLRKlgirpkngngkDVCALIANLENLESLTVLMASKDEildlqslssppqyLQRLYLTGNMKKLPDWIFKLKNVIRLgldlsgltedplrvphalpnllelrlggtynyklfhfeagwfpklqiltlfDFVAVKSVIIekgampdirelgigpfplwSMYIFLTDHILDQIVVVMLLLTCFEFE
Flexible Loop (DISEMBL)
vakvhrglgslmdlqklsIIEADSQVLKELMKLRQLRklgirpkngngkDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLsgltedplrvPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIiekgampdirELGIGPFPLWSMYIFLTDHILDQIVVVMLLLTCFEFE
Low Complexity Region (SEG)
VAKVHRGLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILDQIVVVMLLLTCFEFE
Disordered region (IsUnstruct)
**********LMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILDQIVVVMLLLTCFE**
Disordered Region (DISOPRED)
VAKVHRGLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILDQIVVVMLLLTCFEF*
Disordered Region (DISEMBL)
VAKVHRGLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILDQIVVVMLLLTCFEFE
Disordered Region (DISPRO)
**KVHRGLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILDQIVVVMLLLTCFEFE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VAKVHRGLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILDQIVVVMLLLTCFEFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q39214	926	Disease resistance protei	yes	no	0.794	0.187	0.265	4e-12
Q8W4J9	908	Disease resistance protei	no	no	0.817	0.197	0.251	1e-05
Q8W3K3	910	Putative disease resistan	no	no	0.821	0.197	0.281	2e-05
P59584	910	Disease resistance protei	no	no	0.812	0.195	0.260	3e-05
P0DI18	1049	Probable disease resistan	no	no	0.730	0.152	0.259	4e-05
P0DI17	1049	Probable disease resistan	no	no	0.730	0.152	0.259	4e-05
Q9FJK8	908	Probable disease resistan	no	no	0.817	0.197	0.256	0.0001
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.812	0.197	0.229	0.0002

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 93/177 (52%), Gaps = 3/177 (1%)

Query: 11  LMDLQKLSIIEADSQVLKELMKLRQLRKLG-IRPKNGNGKDVCALIANLENLESLTVLMA 69
           L DLQ +    A+ +++K L  + QL ++  +  +  +G+D+C  +  ++ +  L++   
Sbjct: 683 LKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSI 742

Query: 70  SKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHA 129
            ++E L++  L +    +++L+L G ++++P W   L+N+  LGL  S L E+ +     
Sbjct: 743 DEEEPLEIDDLIATAS-IEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQT 801

Query: 130 LPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGI 186
           LP L+ L     Y      F  G F  L+IL +     +  V+IE GAM ++++L +
Sbjct: 802 LPRLVWLSFYNAYMGPRLRFAQG-FQNLKILEIVQMKHLTEVVIEDGAMFELQKLYV 857

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 89/183 (48%), Gaps = 4/183 (2%)

Query: 8   LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIR-PKNGNGKDVCALIANLENLESLTV 66
           LG L++L+ L         + +L+++ +LR L +   +  N + + + +  L NLE+L  
Sbjct: 668 LGDLVNLEYLYGFSTQHSSVTDLLRMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNF 727

Query: 67  LMASKDEILDLQSLSSPPQY--LQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPL 124
           L + +  ++D         +  L++L L   M K+PD      +++ L L   G+ EDP+
Sbjct: 728 LFSLETYMVDYMGEFVLDHFIHLKQLGLAVRMSKIPDQHQFPPHLVHLFLIYCGMEEDPM 787

Query: 125 RVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRE 183
            +   L +L  +RL    +         G FP+L ++ +     ++  I+E+G+MP +R 
Sbjct: 788 PILEKLLHLKSVRLARKAFLGSRMVCSKGGFPQLCVIEISKESELEEWIVEEGSMPCLRT 847

Query: 184 LGI 186
           L I
Sbjct: 848 LTI 850

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 5/185 (2%)

Query: 7   GLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLT 65
           GL +L++L+ L     ++  L++L  +  LR L I   K+ + + + A I  + +LE+L+
Sbjct: 671 GLCNLVNLETLENFSTENSSLEDLRGMVSLRTLTIGLFKHISKETLFASILGMRHLENLS 730

Query: 66  VLM---ASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTED 122
           +     +SK + +    +     +L++L L   M KLPD      ++  + LD   L ED
Sbjct: 731 IRTPDGSSKFKRIMEDGIVLDAIHLKQLNLRLYMPKLPDEQHFPSHLTSISLDGCCLVED 790

Query: 123 PLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDI 181
           PL +   L  L E+RL    +  K      G FP+L  L ++     +  I+E+G+MP +
Sbjct: 791 PLPILEKLLELKEVRLDFRAFCGKRMVSSDGGFPQLHRLYIWGLAEWEEWIVEEGSMPRL 850

Query: 182 RELGI 186
             L I
Sbjct: 851 HTLTI 855

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 6/184 (3%)

Query: 8   LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIR-PKNGNGKDVCALIANLENLESLTV 66
           LG L++L+ L         + +L+++ +LR L +   +  N K + + +  L NLE+L V
Sbjct: 670 LGDLVNLEYLYGFSTQHTSVTDLLRMTKLRNLTVSLSERYNFKTLSSSLRELRNLETLYV 729

Query: 67  LMASKDEILDLQSLSSPPQY--LQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPL 124
           L + K  ++D         +  L+ L L   M K+PD      +++ + L   G+ EDP+
Sbjct: 730 LFSRKTYMVDHMGEFVLDHFIHLKELGLVVRMSKIPDQHQFPPHLVHIFLFYCGMEEDPM 789

Query: 125 RVPHALPNL--LELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIR 182
            +   L +L  ++LR       ++   + G F +L  L +     ++  I+E+G+MP +R
Sbjct: 790 PILEKLHHLKSVQLRYKAFVGRRMVCSKDG-FTQLCALDISKQSELEDWIVEEGSMPCLR 848

Query: 183 ELGI 186
            L I
Sbjct: 849 TLTI 852

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 2/162 (1%)

Query: 30  LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQR 89
           L KL QL++L +R K+ +GK++         L+ L++    + E   ++  S P  +   
Sbjct: 797 LEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLD 856

Query: 90  LYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELR-LGGTYNYKLFH 148
           +     +K+LPD      ++  + L    L EDP+     L +L EL+ L  +++ ++  
Sbjct: 857 IRDCRKLKQLPDEHLP-SHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMV 915

Query: 149 FEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP 190
                FP+L  L L +   ++  I+E G+MP +  L I   P
Sbjct: 916 CAGSGFPQLHKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCP 957

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 2/162 (1%)

Query: 30  LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQR 89
           L KL QL++L +R K+ +GK++         L+ L++    + E   ++  S P  +   
Sbjct: 797 LEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLD 856

Query: 90  LYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELR-LGGTYNYKLFH 148
           +     +K+LPD      ++  + L    L EDP+     L +L EL+ L  +++ ++  
Sbjct: 857 IRDCRKLKQLPDEHLP-SHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMV 915

Query: 149 FEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP 190
                FP+L  L L +   ++  I+E G+MP +  L I   P
Sbjct: 916 CAGSGFPQLHKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCP 957

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 4/183 (2%)

Query: 8   LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIR-PKNGNGKDVCALIANLENLESLTV 66
           LG L++L+ L         + +L+++ +LR LG+   +  N + + + +  L NLE L V
Sbjct: 668 LGDLVNLEYLWYFSTQHSSVTDLLRMTKLRNLGVSLSERCNFETLSSSLRELRNLEMLNV 727

Query: 67  LMASKDEILDLQSLSSPPQY--LQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPL 124
           L + +  ++D         +  L++L L   M K+PD      ++  + L    + EDP+
Sbjct: 728 LFSPEIVMVDHMGEFVLDHFIHLKQLGLAVRMSKIPDQHQFPPHLAHIHLVHCVMKEDPM 787

Query: 125 RVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRE 183
            +   L +L  + L  G +  +      G FP+L  L +     ++  I+E+G+MP +R 
Sbjct: 788 PILEKLLHLKSVALSYGAFIGRRVVCSKGGFPQLCALGISGESELEEWIVEEGSMPCLRT 847

Query: 184 LGI 186
           L I
Sbjct: 848 LTI 850

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 93/183 (50%), Gaps = 5/183 (2%)

Query: 8   LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIR-PKNGNGKDVCALIANLENLESLTV 66
           LG L++L+ L         + +L+++ +LR  G+   +    +++ + +     LE+L+ 
Sbjct: 660 LGDLVNLEYLWCFSTQHSSVTDLLRMTKLRFFGVSFSERCTFENLSSSLRQFRKLETLSF 719

Query: 67  LMASKDEILD-LQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLR 125
           + + K  ++D +        +L++L L  ++ K+PD      ++  + L    + EDP+ 
Sbjct: 720 IYSRKTYMVDYVGEFVLDFIHLKKLSLGVHLSKIPDQHQLPPHIAHIYLLFCHMEEDPMP 779

Query: 126 VPHALPNL--LELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRE 183
           +   L +L  +ELR       ++   + G FP+L+ L + +   ++  I+E+G+MP +R+
Sbjct: 780 ILEKLLHLKSVELRRKAFIGRRMVCSKGG-FPQLRALQISEQSELEEWIVEEGSMPCLRD 838

Query: 184 LGI 186
           L I
Sbjct: 839 LII 841

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
359480122	934	PREDICTED: disease resistance protein RP	0.853	0.200	0.497	1e-35
225465433	908	PREDICTED: disease resistance protein RP	0.853	0.205	0.442	4e-33
400296111	941	NBS-LRR type disease resistance protein	0.840	0.195	0.436	1e-31
105922948	1997	NBS-NBS-LRR type disease resistance prot	0.808	0.088	0.422	1e-31
224138300	974	cc-nbs-lrr resistance protein [Populus t	0.808	0.181	0.422	2e-31
351721361	934	NBS-LRR type disease resistance protein	0.817	0.191	0.433	2e-31
224071423	1006	nbs-lrr resistance protein [Populus tric	0.808	0.175	0.438	2e-31
357484815	940	Disease resistance protein RPP8 [Medicag	0.831	0.193	0.408	3e-31
147856116	1894	hypothetical protein VITISV_006820 [Viti	0.849	0.098	0.426	3e-31
255582947	935	Disease resistance protein RPM1, putativ	0.863	0.202	0.435	1e-30

>gi|359480122|ref|XP_002265617.2| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera] gi|147771833|emb|CAN60254.1| hypothetical protein VITISV_025805 [Vitis vinifera]

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/191 (49%), Positives = 128/191 (67%), Gaps = 4/191 (2%)

Query: 4   VHRGLGSLMDLQKLSIIEAD--SQVLKELMKLRQLRKLGI-RPKNGNGKDVCALIANLEN 60
           V  G+G L DLQKL  +E +  + V+KEL KLRQLRKLGI +    NG+ +CA I  + +
Sbjct: 668 VKEGIGCLEDLQKLCFVEGNQGTDVIKELGKLRQLRKLGITKLTRENGQPLCASIMKMNH 727

Query: 61  LESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLT 120
           L+SL++  +++DEILDLQ +S PP  L RL L G + KLPDWI KLK++++LGL  S L+
Sbjct: 728 LKSLSISSSTEDEILDLQHVSDPPPCLSRLELYGRLDKLPDWISKLKSLVKLGLWKSRLS 787

Query: 121 EDPLRVPHA-LPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMP 179
            DP+ V  A LPNLLEL L  T+  +   FEA  F KL++L + D + +K V IE GA+P
Sbjct: 788 HDPMGVLGAQLPNLLELELLQTHAVEQLCFEAIGFQKLKVLRICDLIELKKVKIENGALP 847

Query: 180 DIRELGIGPFP 190
            + EL IGP P
Sbjct: 848 QVEELEIGPSP 858

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465433|ref|XP_002265568.1| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/190 (44%), Positives = 122/190 (64%), Gaps = 3/190 (1%)

Query: 4   VHRGLGSLMDLQKLSIIEADS--QVLKELMKLRQLRKLGI-RPKNGNGKDVCALIANLEN 60
           V  G+G L DLQKL+ ++     Q++ EL KLRQLRKLGI +   GNG+ +CA I+N+ +
Sbjct: 666 VKEGIGGLEDLQKLTAVDVTHGVQIITELGKLRQLRKLGITKLSRGNGQRLCASISNMVH 725

Query: 61  LESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLT 120
           L+ L+V   S+DEILD+Q +S+PP +L  +YL G +++LPDWI KL +++R+ L  S L 
Sbjct: 726 LKYLSVCSLSEDEILDIQYMSNPPPFLSTVYLMGRLERLPDWISKLPSLVRVILTRSNLA 785

Query: 121 EDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPD 180
            DP++V  ALP+L  L L  T   +   F A    KL+ L ++D + +K V IE G +P 
Sbjct: 786 NDPMQVFQALPSLQALSLFQTSVVEQLCFGATGIQKLKRLRIYDLIGLKRVKIEDGTLPL 845

Query: 181 IRELGIGPFP 190
           + EL IG  P
Sbjct: 846 LEELMIGRCP 855

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400296111|gb|AFP82245.1| NBS-LRR type disease resistance protein [Malus x domestica]

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 115/188 (61%), Gaps = 4/188 (2%)

Query: 3   KVHRGLGSLMDLQKLSIIEADSQ---VLKELMKLRQLRKLGI-RPKNGNGKDVCALIANL 58
           KV  G+  L  LQKL  IEA+     ++ EL ++ QLR+LGI + +  +G  VC+ +  L
Sbjct: 665 KVPAGICGLQSLQKLCFIEANHDNGALMAELGRMNQLRRLGIFKLRTEDGVTVCSSVEKL 724

Query: 59  ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSG 118
            NL SL+V    K  I+DL  +S PPQ+LQRLYLTG ++ LP WI  L N++RL L  S 
Sbjct: 725 TNLRSLSVSSVEKGMIIDLTQISCPPQFLQRLYLTGRLENLPHWISSLHNLVRLFLKWSR 784

Query: 119 LTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAM 178
           L EDPL     LPNL+ L L   Y+ +  HF+ G FP L++L +     V+ +II++GAM
Sbjct: 785 LKEDPLVHLQGLPNLVHLELLQVYDGECLHFKEGGFPSLKLLGIDKLEGVEEIIIDEGAM 844

Query: 179 PDIRELGI 186
           P + +L I
Sbjct: 845 PCLEKLII 852

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922948|gb|ABF81446.1| NBS-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 120/180 (66%), Gaps = 3/180 (1%)

Query: 8   LGSLMDLQKLSIIEADS--QVLKELMKLRQLRKLGI-RPKNGNGKDVCALIANLENLESL 64
           +G+L+ +QKL  +EAD   +++ EL +L  LR+LGI + +  +GKD+C+ I  L NL +L
Sbjct: 669 IGNLLSVQKLCFLEADQGQKLMSELGRLIHLRRLGILKFRKEDGKDLCSSIDMLTNLRAL 728

Query: 65  TVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPL 124
           +V   ++ E++DL+ LSSPPQ+LQRLYLTG +++LPDWI  L ++++L L  S L EDPL
Sbjct: 729 SVTSITESEVIDLEYLSSPPQFLQRLYLTGRLERLPDWILSLDSLVKLVLKWSRLREDPL 788

Query: 125 RVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIREL 184
                LPNL+ L     Y+ +  HF    F KL++L L     ++S+ ++KGA+P +++L
Sbjct: 789 LFLQNLPNLVHLEFIQVYSGEALHFSNEGFEKLKVLGLNKLERLESITVQKGALPSLQKL 848

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138300|ref|XP_002326568.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|105922919|gb|ABF81444.1| NBS-LRR type disease resistance protein [Populus trichocarpa] gi|222833890|gb|EEE72367.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 120/180 (66%), Gaps = 3/180 (1%)

Query: 8   LGSLMDLQKLSIIEADS--QVLKELMKLRQLRKLGI-RPKNGNGKDVCALIANLENLESL 64
           +G+L+ +QKL  +EAD   +++ EL +L  LR+LGI + +  +GKD+C+ I  L NL +L
Sbjct: 669 IGNLLSVQKLCFLEADQGQKLMSELGRLIHLRRLGILKFRKEDGKDLCSSIDMLTNLRAL 728

Query: 65  TVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPL 124
           +V   ++ E++DL+ LSSPPQ+LQRLYLTG +++LPDWI  L ++++L L  S L EDPL
Sbjct: 729 SVTSITESEVIDLEYLSSPPQFLQRLYLTGRLERLPDWILSLDSLVKLVLKWSRLREDPL 788

Query: 125 RVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIREL 184
                LPNL+ L     Y+ +  HF    F KL++L L     ++S+ ++KGA+P +++L
Sbjct: 789 LFLQNLPNLVHLEFIQVYSGEALHFSNEGFEKLKVLGLNKLERLESITVQKGALPSLQKL 848

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721361|ref|NP_001235671.1| NBS-LRR type disease resistance protein [Glycine max] gi|223452621|gb|ACM89637.1| NBS-LRR type disease resistance protein [Glycine max]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 111/180 (61%), Gaps = 1/180 (0%)

Query: 8   LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTV 66
           +G +  LQKL  IEA+  ++ EL KL QLR+LGIR  +  +G  +C+ I  + NL SL++
Sbjct: 661 IGLMQSLQKLCFIEANQALMIELGKLTQLRRLGIRKMRKQDGAALCSSIEKMINLRSLSI 720

Query: 67  LMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRV 126
                DEI+D+ ++  PPQYLQ+LYL G +   P WI  LKN++R+ L  S L EDPL  
Sbjct: 721 TAIEDDEIIDIHNIFRPPQYLQQLYLGGRLDNFPQWISSLKNLVRVFLKWSRLEEDPLVH 780

Query: 127 PHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGI 186
              LPNL  L     Y  +  HF+A  FP L++L L D   +KS+ +E+GAMP +++L I
Sbjct: 781 LQDLPNLRHLEFLQVYVGETLHFKAKGFPSLKVLGLDDLDGLKSMTVEEGAMPGLKKLII 840

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071423|ref|XP_002303452.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222840884|gb|EEE78431.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/180 (43%), Positives = 116/180 (64%), Gaps = 3/180 (1%)

Query: 8   LGSLMDLQKLSIIEADS--QVLKELMKLRQLRKLGI-RPKNGNGKDVCALIANLENLESL 64
           +G L  LQKL  +EA+    ++ EL +L+QLRKLGI + K  +GK +C+ +  L NL +L
Sbjct: 732 IGRLQSLQKLCFVEANQGRNLMFELGRLKQLRKLGIVKLKKKHGKALCSSVERLTNLRAL 791

Query: 65  TVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPL 124
           +    +++EI+DL  ++SPPQYLQRLYL G M+KLPDWI  L +++RL L  S L +DPL
Sbjct: 792 SATSITENEIIDLDYVASPPQYLQRLYLGGRMEKLPDWISSLDSLVRLVLKWSQLNDDPL 851

Query: 125 RVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIREL 184
                LPNL+ L L   YN +L  F+A  F +L+ L L     ++ + +E+GAMP + +L
Sbjct: 852 VSLQHLPNLVHLELVQVYNGELLCFQAKGFQRLKFLGLNKLERLRMITVEQGAMPCLEKL 911

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484815|ref|XP_003612695.1| Disease resistance protein RPP8 [Medicago truncatula] gi|355514030|gb|AES95653.1| Disease resistance protein RPP8 [Medicago truncatula]

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 115/186 (61%), Gaps = 4/186 (2%)

Query: 3   KVHRGLGSLMDLQKLSIIEADS---QVLKELMKLRQLRKLGIRP-KNGNGKDVCALIANL 58
           KV   +G++  LQKL  ++ D     ++ EL +L QLRKLGIR  +  +G  +C+ I  +
Sbjct: 665 KVAAPIGNMQSLQKLCFVDVDQGSGALMVELGRLTQLRKLGIRKMRKEDGAALCSSIEKM 724

Query: 59  ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSG 118
            NL SL++    +DE++D+  +S+PP+YLQ+LYL+G ++K P WI   KN++R+ L  S 
Sbjct: 725 INLRSLSITAIEEDEVIDIHDISNPPRYLQQLYLSGRLEKFPQWINSCKNLVRVFLKWSR 784

Query: 119 LTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAM 178
           L EDPL     LPNL  L     Y  ++ HF A  FP L++L L D   +K +IIE+GAM
Sbjct: 785 LEEDPLVYLQGLPNLRHLEFLQVYVGEMLHFNAKGFPSLKVLGLDDLAGLKCMIIEEGAM 844

Query: 179 PDIREL 184
             +++L
Sbjct: 845 KGLKKL 850

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856116|emb|CAN80288.1| hypothetical protein VITISV_006820 [Vitis vinifera]

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 124/190 (65%), Gaps = 4/190 (2%)

Query: 4   VHRGLGSLMDLQKLSIIEADSQV--LKELMKLRQLRKLGIRP-KNGNGKDVCALIANLEN 60
           +  G+GS++DLQKL  +EA+  +  ++EL KLRQLR+LGI      +G  +CA I+N+++
Sbjct: 623 IGEGIGSMLDLQKLCYVEANHGMGLIEELGKLRQLRRLGITNLVEDDGLRLCASISNMKH 682

Query: 61  LESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLT 120
           LESL +  +  D+IL L+++S PP+YL+ LYL G + KLP+W+  L++++R+ L  SGL+
Sbjct: 683 LESLCIC-SKDDDILKLETISVPPRYLRNLYLQGCLSKLPEWLPTLRSLVRVCLRRSGLS 741

Query: 121 EDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPD 180
            DP+ V  ALPNLLE+ L   Y+ +   F    F KL+ L L     +K++ I  GA+P 
Sbjct: 742 YDPVEVLQALPNLLEVELHTAYDGECLCFSELGFQKLKRLRLRGMKGLKTLKIHDGALPL 801

Query: 181 IRELGIGPFP 190
           +  L IGP P
Sbjct: 802 LEHLEIGPSP 811

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582947|ref|XP_002532244.1| Disease resistance protein RPM1, putative [Ricinus communis] gi|223528062|gb|EEF30138.1| Disease resistance protein RPM1, putative [Ricinus communis]

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 116/193 (60%), Gaps = 4/193 (2%)

Query: 1   VAKVHRGLGSLMDLQKLSIIEADSQV--LKELMKLRQLRKLGI-RPKNGNGKDVCALIAN 57
             K+H  +GSL  LQKLS IEAD  V  ++++ +L QLRKLGI + K  NG D+C  +  
Sbjct: 666 AVKMHGNIGSLKALQKLSYIEADHGVDLIRQIERLTQLRKLGITKLKKENGLDLCYALEK 725

Query: 58  LENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLS 117
           +  L++L V   S +E LDL+S+S PP  LQ LYL+G + +LP WI KL  +++L  + S
Sbjct: 726 MSCLQTLKVSSGSVEEFLDLRSISGPP-LLQYLYLSGPLVELPPWISKLSCLVKLVFNWS 784

Query: 118 GLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGA 177
            L  D ++V  ALPNL  LR     N K  HF  G F  L++L L     +  +II++G 
Sbjct: 785 RLGNDAIQVLQALPNLQMLRFYEGCNAKQLHFTKGCFSNLKMLHLLHLTRLNKLIIDEGG 844

Query: 178 MPDIRELGIGPFP 190
           +P I EL IGP P
Sbjct: 845 LPVIEELSIGPCP 857

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.785	0.185	0.268	3.2e-14
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.817	0.197	0.251	1.2e-06
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.789	0.170	0.269	1.8e-06
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.789	0.170	0.269	1.8e-06
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.817	0.197	0.256	6.6e-06
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.767	0.160	0.255	2.4e-05
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.767	0.160	0.255	2.4e-05
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.803	0.195	0.226	5.9e-05
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.762	0.146	0.265	0.00023
TAIR|locus:2037623	899	AT1G58410 [Arabidopsis thalian	0.794	0.193	0.278	0.0003

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 47/175 (26%), Positives = 92/175 (52%)

Query:    11 LMDLQKLSIIEADSQVLKELMKLRQLRKLG-IRPKNGNGKDVCALIANLENLESLTVLMA 69
             L DLQ +    A+ +++K L  + QL ++  +  +  +G+D+C  +  ++ +  L++   
Sbjct:   683 LKDLQVMDCFNAEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSI 742

Query:    70 SKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHA 129
              ++E L++  L +    +++L+L G ++++P W   L+N+  LGL  S L E+ +     
Sbjct:   743 DEEEPLEIDDLIATAS-IEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQT 801

Query:   130 LPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIREL 184
             LP L+ L     Y      F  G F  L+IL +     +  V+IE GAM ++++L
Sbjct:   802 LPRLVWLSFYNAYMGPRLRFAQG-FQNLKILEIVQMKHLTEVVIEDGAMFELQKL 855

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 46/183 (25%), Positives = 89/183 (48%)

Query:     8 LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIR-PKNGNGKDVCALIANLENLESLTV 66
             LG L++L+ L         + +L+++ +LR L +   +  N + + + +  L NLE+L  
Sbjct:   668 LGDLVNLEYLYGFSTQHSSVTDLLRMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNF 727

Query:    67 LMASKDEILDLQSLSSPPQY--LQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPL 124
             L + +  ++D         +  L++L L   M K+PD      +++ L L   G+ EDP+
Sbjct:   728 LFSLETYMVDYMGEFVLDHFIHLKQLGLAVRMSKIPDQHQFPPHLVHLFLIYCGMEEDPM 787

Query:   125 RVPHALPNLLELRLGG-TYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRE 183
              +   L +L  +RL    +         G FP+L ++ +     ++  I+E+G+MP +R 
Sbjct:   788 PILEKLLHLKSVRLARKAFLGSRMVCSKGGFPQLCVIEISKESELEEWIVEEGSMPCLRT 847

Query:   184 LGI 186
             L I
Sbjct:   848 LTI 850

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 48/178 (26%), Positives = 88/178 (49%)

Query:    14 LQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDE 73
             L+   + E    +L++L++L++L +LG    +G  K VC+       L+ L++L   + E
Sbjct:   776 LESCRLEEDPMPILEKLLQLKEL-ELGFESFSGK-KMVCSS-GGFPQLQRLSLLKLEEWE 832

Query:    74 ILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL 133
                ++  S P      + +   +K+LPD      ++  + L    L +DPL     L  L
Sbjct:   833 DWKVEESSMPLLRTLDIQVCRKLKQLPDEHLP-SHLTSISLFFCCLEKDPLPTLGRLVYL 891

Query:   134 LELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP 190
              EL+LG  T++ ++     G FP+LQ L+++     +  I+E+G+MP +  L I   P
Sbjct:   892 KELQLGFRTFSGRIMVCSGGGFPQLQKLSIYRLEEWEEWIVEQGSMPFLHTLYIDDCP 949

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 48/178 (26%), Positives = 88/178 (49%)

Query:    14 LQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDE 73
             L+   + E    +L++L++L++L +LG    +G  K VC+       L+ L++L   + E
Sbjct:   776 LESCRLEEDPMPILEKLLQLKEL-ELGFESFSGK-KMVCSS-GGFPQLQRLSLLKLEEWE 832

Query:    74 ILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL 133
                ++  S P      + +   +K+LPD      ++  + L    L +DPL     L  L
Sbjct:   833 DWKVEESSMPLLRTLDIQVCRKLKQLPDEHLP-SHLTSISLFFCCLEKDPLPTLGRLVYL 891

Query:   134 LELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP 190
              EL+LG  T++ ++     G FP+LQ L+++     +  I+E+G+MP +  L I   P
Sbjct:   892 KELQLGFRTFSGRIMVCSGGGFPQLQKLSIYRLEEWEEWIVEQGSMPFLHTLYIDDCP 949

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 6.6e-06, P = 6.6e-06
 Identities = 47/183 (25%), Positives = 88/183 (48%)

Query:     8 LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIR-PKNGNGKDVCALIANLENLESLTV 66
             LG L++L+ L         + +L+++ +LR LG+   +  N + + + +  L NLE L V
Sbjct:   668 LGDLVNLEYLWYFSTQHSSVTDLLRMTKLRNLGVSLSERCNFETLSSSLRELRNLEMLNV 727

Query:    67 LMASKDEILDLQSLSSPPQY--LQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPL 124
             L + +  ++D         +  L++L L   M K+PD      ++  + L    + EDP+
Sbjct:   728 LFSPEIVMVDHMGEFVLDHFIHLKQLGLAVRMSKIPDQHQFPPHLAHIHLVHCVMKEDPM 787

Query:   125 RVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRE 183
              +   L +L  + L  G +  +      G FP+L  L +     ++  I+E+G+MP +R 
Sbjct:   788 PILEKLLHLKSVALSYGAFIGRRVVCSKGGFPQLCALGISGESELEEWIVEEGSMPCLRT 847

Query:   184 LGI 186
             L I
Sbjct:   848 LTI 850

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 44/172 (25%), Positives = 81/172 (47%)

Query:    20 IEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS 79
             +E D   + E  KL QL++L +R K+ +GK++         L+ L++    + E   ++ 
Sbjct:   789 LEEDPMPILE--KLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEE 846

Query:    80 LSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRL- 138
              S P  +   +     +K+LPD      ++  + L    L EDP+     L +L EL+L 
Sbjct:   847 SSMPVLHTLDIRDCRKLKQLPDEHLP-SHLTSISLFFCCLEEDPMPTLERLVHLKELQLL 905

Query:   139 GGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP 190
               +++ ++       FP+L  L L +   ++  I+E G+MP +  L I   P
Sbjct:   906 FRSFSGRIMVCAGSGFPQLHKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCP 957

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 44/172 (25%), Positives = 81/172 (47%)

Query:    20 IEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS 79
             +E D   + E  KL QL++L +R K+ +GK++         L+ L++    + E   ++ 
Sbjct:   789 LEEDPMPILE--KLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEE 846

Query:    80 LSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRL- 138
              S P  +   +     +K+LPD      ++  + L    L EDP+     L +L EL+L 
Sbjct:   847 SSMPVLHTLDIRDCRKLKQLPDEHLP-SHLTSISLFFCCLEEDPMPTLERLVHLKELQLL 905

Query:   139 GGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP 190
               +++ ++       FP+L  L L +   ++  I+E G+MP +  L I   P
Sbjct:   906 FRSFSGRIMVCAGSGFPQLHKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCP 957

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 41/181 (22%), Positives = 92/181 (50%)

Query:     8 LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIR-PKNGNGKDVCALIANLENLESLTV 66
             LG L++L+ L         + +L+++ +LR  G+   +    +++ + +     LE+L+ 
Sbjct:   660 LGDLVNLEYLWCFSTQHSSVTDLLRMTKLRFFGVSFSERCTFENLSSSLRQFRKLETLSF 719

Query:    67 LMASKDEILD-LQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLR 125
             + + K  ++D +        +L++L L  ++ K+PD      ++  + L    + EDP+ 
Sbjct:   720 IYSRKTYMVDYVGEFVLDFIHLKKLSLGVHLSKIPDQHQLPPHIAHIYLLFCHMEEDPMP 779

Query:   126 VPHALPNL--LELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRE 183
             +   L +L  +ELR       ++   + G FP+L+ L + +   ++  I+E+G+MP +R+
Sbjct:   780 ILEKLLHLKSVELRRKAFIGRRMVCSKGG-FPQLRALQISEQSELEEWIVEEGSMPCLRD 838

Query:   184 L 184
             L
Sbjct:   839 L 839

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
 Identities = 46/173 (26%), Positives = 82/173 (47%)

Query:    14 LQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDE 73
             LQ   + E    +L++L++L++L +LG +  +G  K VC+       L+ L++    + E
Sbjct:   782 LQHCRLEEDPMPILEKLLQLKEL-ELGHKSFSGK-KMVCSS-CGFPQLQKLSISGLKEWE 838

Query:    74 ILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL 133
                ++  S P      ++    +K+LPD      ++  + L   GL EDP+     L +L
Sbjct:   839 DWKVEESSMPLLLTLNIFDCRKLKQLPDEHLP-SHLTAISLKKCGL-EDPIPTLERLVHL 896

Query:   134 LELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGI 186
              EL L      ++     G FP+L  L L +   ++  I+E G+MP +  L I
Sbjct:   897 KELSLSELCG-RIMVCTGGGFPQLHKLDLSELDGLEEWIVEDGSMPRLHTLEI 948

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
 Identities = 51/183 (27%), Positives = 91/183 (49%)

Query:    11 LMDLQKLSIIE---ADSQVLKELMKLRQLRKLGIRPKNGNG-KDVCALIANLENLESLTV 66
             L +L+KL  +E     S  L++L  + +LR L I    G   + + A +  L +LE+  +
Sbjct:   668 LSNLEKLEALENFSTKSSSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKI 727

Query:    67 LMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSG--LTEDPL 124
             +  +    +  + +     YL++L L+  M +LP  I  L + + + LDLS   L EDP+
Sbjct:   728 MENAGVNRMGEERMVLDFTYLKKLTLSIEMPRLPK-IQHLPSHLTV-LDLSYCCLEEDPM 785

Query:   125 RVPHALPNLLELRLGG-TYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRE 183
              +   L  L +L L   +++ +     AG FP+L+ L L +    +  I+E+G+M  +  
Sbjct:   786 PILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHT 845

Query:   184 LGI 186
             L I
Sbjct:   846 LSI 848


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.143   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      219       219   0.00092  112 3  11 22  0.48    32
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  164 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.40u 0.10s 21.50t   Elapsed:  00:00:01
  Total cpu time:  21.40u 0.10s 21.50t   Elapsed:  00:00:01
  Start:  Fri May 10 18:01:09 2013   End:  Fri May 10 18:01:10 2013

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033829001 SubName- Full=Chromosome undetermined scaffold_70, whole genome shotgun sequence; (910 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.62
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.62
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.38
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.33
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.32
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.29
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.19
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.17
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.05
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.03
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.86
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.8
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.78
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.74
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.71
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.59
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.55
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.33
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.32
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.29
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.17
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.95
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.93
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.88
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.81
PLN03150	623	hypothetical protein; Provisional	97.77
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.7
PLN03150	623	hypothetical protein; Provisional	97.59
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.57
PRK15386	426	type III secretion protein GogB; Provisional	97.4
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.1
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.0
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.77
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.59
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.87
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.45
KOG4341	483	consensus F-box protein containing LRR [General fu	95.38
KOG4341	483	consensus F-box protein containing LRR [General fu	95.34
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	94.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.83
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.56
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.95
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.85
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	93.47
PRK15386	426	type III secretion protein GogB; Provisional	92.88
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.81
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.54
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.24
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	90.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.53
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.99
smart00370	26	LRR Leucine-rich repeats, outliers.	86.03
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.03

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.62  E-value=4.4e-16  Score=141.83  Aligned_cols=183  Identities=21%  Similarity=0.261  Sum_probs=81.7

Q ss_pred             cCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHH------------------------Hhc
Q 042636            4 VHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCAL------------------------IAN   57 (219)
Q Consensus         4 lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------------------------l~~   57 (219)
                      +|..++++++|++|++.++  ....|..++++++|++|+++. +...+.++..                        +++
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS-NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC-CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            4455555555555555544  334444555555555555542 2222233333                        444


Q ss_pred             cCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCCccce
Q 042636           58 LENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLE  135 (219)
Q Consensus        58 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  135 (219)
                      +++|++|++++|......+ ..+...+ +|++|+++. .+. .+|.++..+++|+.|++++|.+.+..+..+.++++|+.
T Consensus       235 l~~L~~L~L~~n~l~~~~p-~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  312 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIP-SSLGNLK-NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI  312 (968)
T ss_pred             CCCCCEEECcCceeccccC-hhHhCCC-CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence            4444444444443322111 1222233 455555544 222 24444555555555555555554433344455555555


Q ss_pred             eeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCC
Q 042636          136 LRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       136 L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                      |+++ +...+ .++.....+++|+.|++.++...+.++...+.+++|+.|++.++.
T Consensus       313 L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        313 LHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             EECCCCccCC-cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            5554 22221 122222345556666555443222232223344555555555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.62  E-value=5.6e-16  Score=141.12  Aligned_cols=128  Identities=23%  Similarity=0.226  Sum_probs=97.5

Q ss_pred             cccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636            9 GSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY   86 (219)
Q Consensus         9 ~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   86 (219)
                      +.+.+|++|++.++  ....|..++++++|++|+++. +...+..+..++++++|++|++++|......+ ..+..+. +
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~-~  213 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG-NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMK-S  213 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc-CcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcC-C
Confidence            46889999999888  567888899999999999983 44445667788999999999999987654332 3444455 8


Q ss_pred             ccEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           87 LQRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        87 L~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      |+.|+++. .+. .+|..+..+++|++|++++|.+.+..+..++.+++|+.|+++
T Consensus       214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  268 (968)
T PLN00113        214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY  268 (968)
T ss_pred             ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence            88888876 444 477777788888888888887766555566777777777776

>PLN03210 Resistant to P

Probab=99.38  E-value=6.7e-13  Score=122.56  Aligned_cols=42  Identities=10%  Similarity=0.173  Sum_probs=22.7

Q ss_pred             CcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcc
Q 042636          154 FPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMY  195 (219)
Q Consensus       154 ~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~  195 (219)
                      +++|+.|++.+|+.+..++.....+++|+.+.+.+|+.+..+
T Consensus       868 l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        868 FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence            445555555555555555444445555566666666555443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.33  E-value=3.4e-12  Score=117.90  Aligned_cols=88  Identities=24%  Similarity=0.284  Sum_probs=51.8

Q ss_pred             cccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS   79 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   79 (219)
                      ..+|.++..+++|++|++.++  ...+| +++.+++|++|++. .+.....++..+.++++|+.|++++|......+. .
T Consensus       624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~-~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~  700 (1153)
T PLN03210        624 EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS-DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-G  700 (1153)
T ss_pred             cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec-CCCCccccchhhhccCCCCEEeCCCCCCcCccCC-c
Confidence            345666667777777777654  23333 46667777777777 2444566667777777788887776644333221 1


Q ss_pred             CCCcccCccEEEecc
Q 042636           80 LSSPPQYLQRLYLTG   94 (219)
Q Consensus        80 ~~~~~~~L~~L~l~~   94 (219)
                       .... +|+.|.+++
T Consensus       701 -i~l~-sL~~L~Lsg  713 (1153)
T PLN03210        701 -INLK-SLYRLNLSG  713 (1153)
T ss_pred             -CCCC-CCCEEeCCC
Confidence             1222 555555554

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.32  E-value=8e-14  Score=116.63  Aligned_cols=160  Identities=20%  Similarity=0.189  Sum_probs=125.7

Q ss_pred             ccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCC
Q 042636            3 KVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLS   81 (219)
Q Consensus         3 ~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~   81 (219)
                      ++|..+..|++++.|.+... ...+|++++.+.+|++|.+.  .+....+...++.++.|+.+.+..|+.........+.
T Consensus        23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~--HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF  100 (1255)
T KOG0444|consen   23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMA--HNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF  100 (1255)
T ss_pred             cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhh--hhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc
Confidence            57899999999999998877 78899999999999999988  4566677788899999999999988775444345666


Q ss_pred             CcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCccccee
Q 042636           82 SPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQIL  160 (219)
Q Consensus        82 ~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  160 (219)
                      .+. .|+.|++++ .+.++|..+...+++-.|.+++|+|...+-..+.++..|-.|+++++.. +.++-....+..|++|
T Consensus       101 ~l~-dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  101 RLK-DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIRRLSMLQTL  178 (1255)
T ss_pred             ccc-cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hhcCHHHHHHhhhhhh
Confidence            666 899999998 8889999999999999999999999988777778888888888873321 2233333344555566


Q ss_pred             eecccC
Q 042636          161 TLFDFV  166 (219)
Q Consensus       161 ~l~~~~  166 (219)
                      .+++++
T Consensus       179 ~Ls~NP  184 (1255)
T KOG0444|consen  179 KLSNNP  184 (1255)
T ss_pred             hcCCCh
Confidence            555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.29  E-value=5.5e-14  Score=99.99  Aligned_cols=134  Identities=22%  Similarity=0.204  Sum_probs=97.6

Q ss_pred             cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL   80 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   80 (219)
                      ..+|++|..+.+|+.|++.++ ..+.|.++..++.||.|++.  -+-....+..++.++-|++||+.+|+.++..-...+
T Consensus        46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg--mnrl~~lprgfgs~p~levldltynnl~e~~lpgnf  123 (264)
T KOG0617|consen   46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG--MNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNF  123 (264)
T ss_pred             eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc--hhhhhcCccccCCCchhhhhhccccccccccCCcch
Confidence            467888888888888888777 77888888888888888777  333444556677778888888888877654433444


Q ss_pred             CCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           81 SSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        81 ~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      ..+. .|+.|++.+ .++-+|+.++++.+|+.|.+.+|.+-..+ ..++.+.+|++|.++
T Consensus       124 f~m~-tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp-keig~lt~lrelhiq  181 (264)
T KOG0617|consen  124 FYMT-TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP-KEIGDLTRLRELHIQ  181 (264)
T ss_pred             hHHH-HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc-HHHHHHHHHHHHhcc
Confidence            4455 677778876 77778888888888888888887765543 445667777777765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.19  E-value=7.7e-14  Score=110.93  Aligned_cols=193  Identities=18%  Similarity=0.140  Sum_probs=145.4

Q ss_pred             cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL   80 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   80 (219)
                      .++|.+++++..++.++++.+ ..+.|++++.+.++++++.+  .+...+.+..++++..|+.++-.+|+..+..  +++
T Consensus        81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s--~n~~~el~~~i~~~~~l~dl~~~~N~i~slp--~~~  156 (565)
T KOG0472|consen   81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS--SNELKELPDSIGRLLDLEDLDATNNQISSLP--EDM  156 (565)
T ss_pred             hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc--ccceeecCchHHHHhhhhhhhccccccccCc--hHH
Confidence            467888888888888887766 77888888889999999888  5666777778888888888888887765542  333


Q ss_pred             CCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccc
Q 042636           81 SSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQ  158 (219)
Q Consensus        81 ~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~  158 (219)
                      .... ++..+.+.+ .+..+|+..-.++.|+++++..|.+... +..++.+.+|+.|++. +..  ..++ ..+++..|.
T Consensus       157 ~~~~-~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki--~~lP-ef~gcs~L~  231 (565)
T KOG0472|consen  157 VNLS-KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKI--RFLP-EFPGCSLLK  231 (565)
T ss_pred             HHHH-HHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhccc--ccCC-CCCccHHHH
Confidence            3333 777788877 7777887777788999999988777665 4567889999999997 333  1123 456778888


Q ss_pred             eeeecccCCcceEEEcCC-cccccceeeeecCCCCCcchhHHhhhhhh
Q 042636          159 ILTLFDFVAVKSVIIEKG-AMPDIRELGIGPFPLWSMYIFLTDHILDQ  205 (219)
Q Consensus       159 ~L~l~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~l~~~~~~~~~l~~~  205 (219)
                      +++++. +.++.++.+.+ +++++..|++++ .+++++|.++--+++.
T Consensus       232 Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL  277 (565)
T KOG0472|consen  232 ELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSL  277 (565)
T ss_pred             HHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhh
Confidence            888884 44677766654 789999999998 4788999988777654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.17  E-value=9.2e-13  Score=110.40  Aligned_cols=182  Identities=18%  Similarity=0.176  Sum_probs=99.5

Q ss_pred             cccCCcccccccccccccccc-C-------------------------hHhHHHHhcccccceeeeeeCCCChhHHHHHH
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-D-------------------------SQVLKELMKLRQLRKLGIRPKNGNGKDVCALI   55 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~-------------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l   55 (219)
                      .++|++++.+.+|+.|.+.-+ .                         ..+|+++-++..|..|+++  .+...+.+..+
T Consensus        45 ~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS--hNqL~EvP~~L  122 (1255)
T KOG0444|consen   45 EQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS--HNQLREVPTNL  122 (1255)
T ss_pred             hhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecc--hhhhhhcchhh
Confidence            356777776666666655433 2                         2344444455556666665  34555666666


Q ss_pred             hccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccc
Q 042636           56 ANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLL  134 (219)
Q Consensus        56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  134 (219)
                      .+-+++-+|++++|+...... +-+.... .|-.|+++. .++.+|+.+..+.+|++|++++|.+.......+..+.+|+
T Consensus       123 E~AKn~iVLNLS~N~IetIPn-~lfinLt-DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~  200 (1255)
T KOG0444|consen  123 EYAKNSIVLNLSYNNIETIPN-SLFINLT-DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS  200 (1255)
T ss_pred             hhhcCcEEEEcccCccccCCc-hHHHhhH-hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence            666677777777765533321 1112222 455666766 6777888888888888888888876554444444555555


Q ss_pred             eeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeec
Q 042636          135 ELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGP  188 (219)
Q Consensus       135 ~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~  188 (219)
                      .|.++ .......++....++.+|..+++++ +++...+-..+.+++|..|++++
T Consensus       201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             hhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc
Confidence            55555 3333333443344445555555552 22333333333344444444444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.05  E-value=4.4e-11  Score=99.57  Aligned_cols=152  Identities=22%  Similarity=0.218  Sum_probs=83.6

Q ss_pred             cccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636            9 GSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL   87 (219)
Q Consensus         9 ~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L   87 (219)
                      .++.+||++++.++ ...+|...+...+|++|++.. +....--.++++.++.||.||++.|..+.. +.++++... ++
T Consensus        99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN~is~i-~~~sfp~~~-ni  175 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLSRNLISEI-PKPSFPAKV-NI  175 (873)
T ss_pred             hcCCcceeeeeccchhhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhhhchhhcc-cCCCCCCCC-Cc
Confidence            44445555555444 333443333334455555552 111122234455666677777777544332 223444333 78


Q ss_pred             cEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecc
Q 042636           88 QRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFD  164 (219)
Q Consensus        88 ~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~  164 (219)
                      ++|+++. .++.+- ..+..+.+|..|.++.|+++..+...|.++|+|+.|++. +.+.-. -+....++++|+.|.+..
T Consensus       176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv-e~ltFqgL~Sl~nlklqr  254 (873)
T KOG4194|consen  176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV-EGLTFQGLPSLQNLKLQR  254 (873)
T ss_pred             eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee-hhhhhcCchhhhhhhhhh
Confidence            8888776 555432 345666777888888888877777777778888888875 332110 022334566677666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.03  E-value=3.3e-12  Score=91.03  Aligned_cols=147  Identities=24%  Similarity=0.313  Sum_probs=65.5

Q ss_pred             ccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEE
Q 042636           12 MDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRL   90 (219)
Q Consensus        12 ~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L   90 (219)
                      .+...|.++.+ ...+|+.++.+.+|+.|+++  ++..++++.+++.+++|+.|+++-|.                    
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~--nnqie~lp~~issl~klr~lnvgmnr--------------------   90 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLS--NNQIEELPTSISSLPKLRILNVGMNR--------------------   90 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcc--cchhhhcChhhhhchhhhheecchhh--------------------
Confidence            33333443333 34444445555555555555  34444555555555555555544332                    


Q ss_pred             EecccCCCCChhhhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCc
Q 042636           91 YLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAV  168 (219)
Q Consensus        91 ~l~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  168 (219)
                           +..+|..++.++-|+.||+++|.+.+.. +..|-.+..|+.|++. +.+  +.++-..+.+.+||.|.+.++. +
T Consensus        91 -----l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdnd-l  162 (264)
T KOG0617|consen   91 -----LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDND-L  162 (264)
T ss_pred             -----hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCc-h
Confidence                 2334444555555555555555444322 2233344445555554 222  1122233444455555544322 2


Q ss_pred             ceEEEcCCcccccceeeeec
Q 042636          169 KSVIIEKGAMPDIRELGIGP  188 (219)
Q Consensus       169 ~~~~~~~~~~p~L~~L~l~~  188 (219)
                      -.++-+.|.+.+|++|++.+
T Consensus       163 l~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  163 LSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhCcHHHHHHHHHHHHhccc
Confidence            23333344455555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.97  E-value=1.8e-10  Score=96.02  Aligned_cols=168  Identities=18%  Similarity=0.211  Sum_probs=119.0

Q ss_pred             cccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEe
Q 042636           15 QKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYL   92 (219)
Q Consensus        15 ~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l   92 (219)
                      |+|+++++  ...-+..+.+++||+++++.  .+....++.......+|+.|++.+|...+.. .+.+...+ .|+.|++
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~--~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~-se~L~~l~-alrslDL  156 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLN--KNELTRIPRFGHESGHLEKLDLRHNLISSVT-SEELSALP-ALRSLDL  156 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeec--cchhhhcccccccccceeEEeeecccccccc-HHHHHhHh-hhhhhhh
Confidence            45888887  44556678899999999998  5666777776677788999999997664433 35555566 8999999


Q ss_pred             cc-cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEE-EccCCCcccceeeecccCCc
Q 042636           93 TG-NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFH-FEAGWFPKLQILTLFDFVAV  168 (219)
Q Consensus        93 ~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  168 (219)
                      +. .+.++|. .+..-.++++|++++|+|.......|..+.+|..|.++ +... . ++ .....+|+|+.|++..+. +
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-t-Lp~r~Fk~L~~L~~LdLnrN~-i  233 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-T-LPQRSFKRLPKLESLDLNRNR-I  233 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-c-cCHHHhhhcchhhhhhccccc-e
Confidence            98 6666653 34455789999999999998777888999999999998 3332 1 22 223347889999887532 3


Q ss_pred             ceEE-EcCCcccccceeeeecC
Q 042636          169 KSVI-IEKGAMPDIRELGIGPF  189 (219)
Q Consensus       169 ~~~~-~~~~~~p~L~~L~l~~~  189 (219)
                      +... .....+|+|+.|.+..+
T Consensus       234 rive~ltFqgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  234 RIVEGLTFQGLPSLQNLKLQRN  255 (873)
T ss_pred             eeehhhhhcCchhhhhhhhhhc
Confidence            3321 12234677777666653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.87  E-value=1.6e-10  Score=92.55  Aligned_cols=161  Identities=21%  Similarity=0.222  Sum_probs=77.2

Q ss_pred             CCcccccccccccccccc--C------hHhHHHHhcccccceeeeeeCCCChhHHHHHHhcc---CCCCeEEEEecCCCc
Q 042636            5 HRGLGSLMDLQKLSIIEA--D------SQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANL---ENLESLTVLMASKDE   73 (219)
Q Consensus         5 P~~l~~l~~L~~L~~~~~--~------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~   73 (219)
                      +..+...++++++++.++  .      ..++..++++++|++|+++. +.........+..+   ++|++|++++|....
T Consensus        44 ~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~  122 (319)
T cd00116          44 ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSD-NALGPDGCGVLESLLRSSSLQELKLNNNGLGD  122 (319)
T ss_pred             HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccC-CCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence            333444555666665544  2      22344556666777777763 22222222233333   337777777765432


Q ss_pred             cc-c--cccCCCcccCccEEEecc-cCCC-----CChhhhcCCCccEEEEeeecCCCCCCc----cccCCCccceeeec-
Q 042636           74 IL-D--LQSLSSPPQYLQRLYLTG-NMKK-----LPDWIFKLKNVIRLGLDLSGLTEDPLR----VPHALPNLLELRLG-  139 (219)
Q Consensus        74 ~~-~--~~~~~~~~~~L~~L~l~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~-  139 (219)
                      .. .  ...+...+.+|+.|++++ .++.     ++..+..+.+|++|++++|.+.+....    .+...++|++|+++ 
T Consensus       123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  202 (319)
T cd00116         123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN  202 (319)
T ss_pred             HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence            11 1  122222312677777765 4431     233344556677777776666542211    23344567777776 


Q ss_pred             cccCCceE---EEccCCCcccceeeecccC
Q 042636          140 GTYNYKLF---HFEAGWFPKLQILTLFDFV  166 (219)
Q Consensus       140 ~~~~~~~~---~~~~~~~~~L~~L~l~~~~  166 (219)
                      +...+...   ......+++|++|++.++.
T Consensus       203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         203 NGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             CccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            22221111   1112235667777666543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.86  E-value=2.4e-10  Score=99.40  Aligned_cols=186  Identities=19%  Similarity=0.274  Sum_probs=119.5

Q ss_pred             cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL   80 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   80 (219)
                      ..+|++++.+.+|+.++...+ ...+|..+..+++|+.|.+.  .+..+.++..++++++|++|++..|......+ ..+
T Consensus       254 ~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~--~nel~yip~~le~~~sL~tLdL~~N~L~~lp~-~~l  330 (1081)
T KOG0618|consen  254 SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA--YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPD-NFL  330 (1081)
T ss_pred             hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh--hhhhhhCCCcccccceeeeeeehhccccccch-HHH
Confidence            357878888888888887776 67777777778888888776  34445555556778888888887765533221 000


Q ss_pred             CCccc------------------------CccEEEecc-cCCC--CChhhhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636           81 SSPPQ------------------------YLQRLYLTG-NMKK--LPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL  133 (219)
Q Consensus        81 ~~~~~------------------------~L~~L~l~~-~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  133 (219)
                      .....                        .|+.|++.. .+++  +| .+..+.+||.|++++|++...+...+.+++.|
T Consensus       331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L  409 (1081)
T KOG0618|consen  331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL  409 (1081)
T ss_pred             hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHh
Confidence            00010                        233333333 2322  22 45677889999999998887777778888888


Q ss_pred             ceeeec-cccCC------------------ceE-EE-ccCCCcccceeeecccCCcceEEEcCCcc-cccceeeeecCCC
Q 042636          134 LELRLG-GTYNY------------------KLF-HF-EAGWFPKLQILTLFDFVAVKSVIIEKGAM-PDIRELGIGPFPL  191 (219)
Q Consensus       134 ~~L~l~-~~~~~------------------~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-p~L~~L~l~~~~~  191 (219)
                      ++|.++ +..+.                  +.+ .+ ....+++|+.++++ ++++.....+.... |+|+.|++.++.+
T Consensus       410 eeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  410 EELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence            888887 32211                  111 01 12346788888888 45577666655555 7899999999875


Q ss_pred             C
Q 042636          192 W  192 (219)
Q Consensus       192 l  192 (219)
                      +
T Consensus       489 l  489 (1081)
T KOG0618|consen  489 L  489 (1081)
T ss_pred             c
Confidence            4

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=9.2e-10  Score=88.72  Aligned_cols=177  Identities=18%  Similarity=0.129  Sum_probs=96.8

Q ss_pred             cccccccccccccChHhH---HHHhcccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636           10 SLMDLQKLSIIEADSQVL---KELMKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ   85 (219)
Q Consensus        10 ~l~~L~~L~~~~~~~~~~---~~l~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   85 (219)
                      ++.+|++..+-++..+.+   .....++++|.|+++. ....+..+.....++++|+.|+++.|......+. ......+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchhhhh
Confidence            344555555444422222   3567799999999997 4556677777788899999999998866433221 0111123


Q ss_pred             CccEEEecc-cCCC--CChhh------------------------hcCCCccEEEEeeecCCCCC-CccccCCCccceee
Q 042636           86 YLQRLYLTG-NMKK--LPDWI------------------------FKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELR  137 (219)
Q Consensus        86 ~L~~L~l~~-~~~~--l~~~~------------------------~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~  137 (219)
                      +++.|.+++ .+.+  +....                        .-++.|+.|+|++|.+...+ ....+.+|.|+.|.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            788888875 3322  11111                        22345666666666554432 34456677777777


Q ss_pred             ec-cccCCce-----EEEccCCCcccceeeecccCCcceEEEc--CCcccccceeeeec
Q 042636          138 LG-GTYNYKL-----FHFEAGWFPKLQILTLFDFVAVKSVIIE--KGAMPDIRELGIGP  188 (219)
Q Consensus       138 l~-~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~p~L~~L~l~~  188 (219)
                      ++ ++...-.     .......|++|+.|.+..++ ..+|..-  ....++|+.|.+..
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhccc
Confidence            76 3322110     11123456777777776543 3333321  11245566655444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.80  E-value=3.3e-11  Score=96.18  Aligned_cols=100  Identities=22%  Similarity=0.200  Sum_probs=46.6

Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF  163 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~  163 (219)
                      +|..|++.. .+..+| .+..+..|+.|++..|++.-.+-+...+++++..|++. +..  +..+....-+++|.+|+++
T Consensus       207 ~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl--ke~Pde~clLrsL~rLDlS  283 (565)
T KOG0472|consen  207 SLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL--KEVPDEICLLRSLERLDLS  283 (565)
T ss_pred             hhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc--ccCchHHHHhhhhhhhccc
Confidence            344444433 333333 33444444444444444433332333355555555554 222  1122223334566666666


Q ss_pred             ccCCcceEEEcCCcccccceeeeecCC
Q 042636          164 DFVAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                      ++. ++.++.+.|.+ .|+.|.+.++|
T Consensus       284 NN~-is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  284 NND-ISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             CCc-cccCCcccccc-eeeehhhcCCc
Confidence            433 45555555555 56666666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=5.1e-10  Score=86.35  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=90.4

Q ss_pred             cccccccccccccc--ChHhHHHHhcccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636            9 GSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ   85 (219)
Q Consensus         9 ~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   85 (219)
                      +.+++|+.|.+.++  ++.+...+++=.+|+.|+++. .+-...++.-.+.+++.|..|+++|+..........+.....
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise  286 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE  286 (419)
T ss_pred             HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence            34455555555554  556666677777788887775 222222333345677788888888876533221111111122


Q ss_pred             CccEEEecccCCC-----CChhhhcCCCccEEEEeeecCC-CCCCccccCCCccceeeeccccC-CceEEEccCCCcccc
Q 042636           86 YLQRLYLTGNMKK-----LPDWIFKLKNVIRLGLDLSGLT-EDPLRVPHALPNLLELRLGGTYN-YKLFHFEAGWFPKLQ  158 (219)
Q Consensus        86 ~L~~L~l~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~  158 (219)
                      .+++|.++|+-..     +..-...+++|.+||+++|..- ..-+..+..++.|++|.++.|+. ........+..|.|.
T Consensus       287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~  366 (419)
T KOG2120|consen  287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLV  366 (419)
T ss_pred             hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceE
Confidence            7778888763222     2222356788888888877433 33345566788888888874442 122233445677888


Q ss_pred             eeeeccc
Q 042636          159 ILTLFDF  165 (219)
Q Consensus       159 ~L~l~~~  165 (219)
                      +|++.+|
T Consensus       367 yLdv~g~  373 (419)
T KOG2120|consen  367 YLDVFGC  373 (419)
T ss_pred             EEEeccc
Confidence            8877765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.78  E-value=5.5e-10  Score=97.27  Aligned_cols=179  Identities=18%  Similarity=0.200  Sum_probs=120.0

Q ss_pred             cccCCcccccccccccccccc-ChHhHHHH-hc-------------------------ccccceeeeeeCCCChhHHHHH
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKEL-MK-------------------------LRQLRKLGIRPKNGNGKDVCAL   54 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l-~~-------------------------l~~L~~L~l~~~~~~~~~~~~~   54 (219)
                      +.+|+..+++++|++|++..+ ...+|+.+ ..                         +..|+.|++. ++......+..
T Consensus       300 ~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla-nN~Ltd~c~p~  378 (1081)
T KOG0618|consen  300 EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA-NNHLTDSCFPV  378 (1081)
T ss_pred             hhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh-cCcccccchhh
Confidence            567888888888888888766 34333321 11                         1223334333 12333444556


Q ss_pred             HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636           55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL  133 (219)
Q Consensus        55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  133 (219)
                      +.+..+|++|++++|......+ ..+.++. .|++|+++| .++.+|..+..+..|++|...+|++...|  .+..++.|
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpa-s~~~kle-~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL  454 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPA-SKLRKLE-ELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQL  454 (1081)
T ss_pred             hccccceeeeeecccccccCCH-HHHhchH-HhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcc
Confidence            7888999999999987654432 3444555 899999999 88889988999999999999999887754  67789999


Q ss_pred             ceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecC
Q 042636          134 LELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPF  189 (219)
Q Consensus       134 ~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~  189 (219)
                      +.++++ +......+.... ..|+|++|++.++.+   ..+....++.++.+...+.
T Consensus       455 ~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~---l~~d~~~l~~l~~l~~~~i  507 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTR---LVFDHKTLKVLKSLSQMDI  507 (1081)
T ss_pred             eEEecccchhhhhhhhhhC-CCcccceeeccCCcc---cccchhhhHHhhhhhheec
Confidence            999998 444322222222 228999999998764   2334445666665555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.74  E-value=1.2e-09  Score=87.65  Aligned_cols=14  Identities=43%  Similarity=0.463  Sum_probs=6.9

Q ss_pred             CCccEEEEeeecCC
Q 042636          107 KNVIRLGLDLSGLT  120 (219)
Q Consensus       107 ~~L~~L~l~~~~~~  120 (219)
                      ++|+.|++++|.+.
T Consensus       193 ~~L~~L~L~~n~i~  206 (319)
T cd00116         193 CNLEVLDLNNNGLT  206 (319)
T ss_pred             CCCCEEeccCCccC
Confidence            45555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.73  E-value=3.6e-08  Score=88.45  Aligned_cols=66  Identities=21%  Similarity=0.346  Sum_probs=43.4

Q ss_pred             cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEe
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLM   68 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~   68 (219)
                      .++|++|+++.+|++|++..+ ....|..++++..|.+|++.. .......+.....|.+||+|.+..
T Consensus       585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~-~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV-TGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc-ccccccccchhhhcccccEEEeec
Confidence            468888888888888888877 667888888888888777774 111111122333455666666544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.71  E-value=2.2e-08  Score=88.37  Aligned_cols=41  Identities=17%  Similarity=0.140  Sum_probs=23.1

Q ss_pred             cccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHH
Q 042636          155 PKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLT  199 (219)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~  199 (219)
                      +.|+.|++.++. +..++  ....++|+.|++.+| .+..+|..+
T Consensus       346 ~sL~~L~Ls~N~-L~~LP--~~lp~~L~~LdLs~N-~Lt~LP~~l  386 (754)
T PRK15370        346 PELQVLDVSKNQ-ITVLP--ETLPPTITTLDVSRN-ALTNLPENL  386 (754)
T ss_pred             CcccEEECCCCC-CCcCC--hhhcCCcCEEECCCC-cCCCCCHhH
Confidence            567777777543 33332  122356777777775 355566544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.59  E-value=8.6e-09  Score=75.16  Aligned_cols=102  Identities=23%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             hcccccceeeeeeCCCChhHHHHHHh-ccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhh-hcCC
Q 042636           31 MKLRQLRKLGIRPKNGNGKDVCALIA-NLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWI-FKLK  107 (219)
Q Consensus        31 ~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~-~~l~  107 (219)
                      .+..++++|++.+  .....+ +.++ .+.+|++|++++|...+.   +.+...+ +|+.|+++. .++.++..+ ..++
T Consensus        16 ~n~~~~~~L~L~~--n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~-~L~~L~L~~N~I~~i~~~l~~~lp   88 (175)
T PF14580_consen   16 NNPVKLRELNLRG--NQISTI-ENLGATLDKLEVLDLSNNQITKL---EGLPGLP-RLKTLDLSNNRISSISEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S-----TT----T-T--EEE--SS---S-CHHHHHH-T
T ss_pred             ccccccccccccc--cccccc-cchhhhhcCCCEEECCCCCCccc---cCccChh-hhhhcccCCCCCCccccchHHhCC
Confidence            3444566666662  222221 2333 356677777766654433   3344444 677777766 566665444 3467


Q ss_pred             CccEEEEeeecCCC-CCCccccCCCccceeeec
Q 042636          108 NVIRLGLDLSGLTE-DPLRVPHALPNLLELRLG  139 (219)
Q Consensus       108 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~  139 (219)
                      +|+.|++++|++.+ .....+..+|+|+.|++.
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~  121 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLE  121 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence            77777777776654 234455666777777665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.59  E-value=1.1e-07  Score=83.88  Aligned_cols=24  Identities=8%  Similarity=-0.032  Sum_probs=12.7

Q ss_pred             CcccccceeeeecCCCCCcchhHH
Q 042636          176 GAMPDIRELGIGPFPLWSMYIFLT  199 (219)
Q Consensus       176 ~~~p~L~~L~l~~~~~l~~~~~~~  199 (219)
                      +.+++|+.|++.+++--...+..+
T Consensus       442 ~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        442 IHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhccCCCeEECCCCCCCchHHHHH
Confidence            345666666666665433333333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.56  E-value=3e-08  Score=88.88  Aligned_cols=195  Identities=18%  Similarity=0.168  Sum_probs=118.4

Q ss_pred             cCCc-ccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636            4 VHRG-LGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL   80 (219)
Q Consensus         4 lP~~-l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   80 (219)
                      +|.+ +..|+.|+.|+++++  ..++|..++++-+||+|+++  ......++..++++.+|.+|++.........+ ...
T Consensus       562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~--~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~  638 (889)
T KOG4658|consen  562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS--DTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GIL  638 (889)
T ss_pred             cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc--CCCccccchHHHHHHhhheecccccccccccc-chh
Confidence            3444 667899999999987  78899999999999999998  45556889999999999999998765433321 222


Q ss_pred             CCcccCccEEEecc-cCCC---CChhhhcCCCccEEEEeeecC---C----------------------CCCCccccCCC
Q 042636           81 SSPPQYLQRLYLTG-NMKK---LPDWIFKLKNVIRLGLDLSGL---T----------------------EDPLRVPHALP  131 (219)
Q Consensus        81 ~~~~~~L~~L~l~~-~~~~---l~~~~~~l~~L~~L~l~~~~~---~----------------------~~~~~~l~~l~  131 (219)
                      ..+. +|++|.+.. ....   .-..+..+.+|+.+.......   .                      ......+..+.
T Consensus       639 ~~L~-~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~  717 (889)
T KOG4658|consen  639 LELQ-SLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLG  717 (889)
T ss_pred             hhcc-cccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccccc
Confidence            3355 899988865 2111   123345566666666644332   0                      00112344566


Q ss_pred             ccceeeeccccCCceEE-----EccCC-CcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhh
Q 042636          132 NLLELRLGGTYNYKLFH-----FEAGW-FPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHIL  203 (219)
Q Consensus       132 ~L~~L~l~~~~~~~~~~-----~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~  203 (219)
                      +|+.|.+..+...+...     ..... |+++..+.+.+|.......+... .|+|+.|.+..|+.+++++.....+.
T Consensus       718 ~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f-~~~L~~l~l~~~~~~e~~i~~~k~~~  794 (889)
T KOG4658|consen  718 NLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF-APHLTSLSLVSCRLLEDIIPKLKALL  794 (889)
T ss_pred             CcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc-cCcccEEEEecccccccCCCHHHHhh
Confidence            66666665322211000     00111 44555555555554444333222 48999999999998877655444433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.55  E-value=8.3e-08  Score=84.81  Aligned_cols=172  Identities=13%  Similarity=0.152  Sum_probs=103.6

Q ss_pred             cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL   80 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   80 (219)
                      +.+|..+.  .+++.|++.++ ...+|..+.  .+|++|+++.  +....++..+.  .+|+.|++++|..... + ..+
T Consensus       191 tsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~--N~LtsLP~~l~--~~L~~L~Ls~N~L~~L-P-~~l  260 (754)
T PRK15370        191 TTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANS--NQLTSIPATLP--DTIQEMELSINRITEL-P-ERL  260 (754)
T ss_pred             CcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCC--CccccCChhhh--ccccEEECcCCccCcC-C-hhH
Confidence            34565553  36777777766 445555543  4788888773  33334443332  3688888888765432 1 111


Q ss_pred             CCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccc
Q 042636           81 SSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQ  158 (219)
Q Consensus        81 ~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~  158 (219)
                         +.+|+.|++++ .++.+|..+.  .+|+.|++++|.+...+.. +  .++|+.|+++ +....  ++  ....++|+
T Consensus       261 ---~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~--LP--~~l~~sL~  328 (754)
T PRK15370        261 ---PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTA--LP--ETLPPGLK  328 (754)
T ss_pred             ---hCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCcccc--CC--ccccccce
Confidence               23788888877 6666775443  5788888888877654321 1  2467777776 33321  21  22346889


Q ss_pred             eeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHH
Q 042636          159 ILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLT  199 (219)
Q Consensus       159 ~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~  199 (219)
                      .|.+.++. +..++.  .-.++|+.|++.+| ++..+|.++
T Consensus       329 ~L~Ls~N~-Lt~LP~--~l~~sL~~L~Ls~N-~L~~LP~~l  365 (754)
T PRK15370        329 TLEAGENA-LTSLPA--SLPPELQVLDVSKN-QITVLPETL  365 (754)
T ss_pred             eccccCCc-cccCCh--hhcCcccEEECCCC-CCCcCChhh
Confidence            99888654 454432  22478999999987 456666544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.48  E-value=1.7e-08  Score=78.29  Aligned_cols=124  Identities=22%  Similarity=0.215  Sum_probs=91.7

Q ss_pred             ccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEE
Q 042636           35 QLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLG  113 (219)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~  113 (219)
                      .|++++++  .+...++-++..=.++++.|+++.|......   ++...+ +|++|++++ .++.+..|..++.+.++|.
T Consensus       285 ~LtelDLS--~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~---nLa~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  285 ELTELDLS--GNLITQIDESVKLAPKLRRLILSQNRIRTVQ---NLAELP-QLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhcccc--ccchhhhhhhhhhccceeEEeccccceeeeh---hhhhcc-cceEeecccchhHhhhhhHhhhcCEeeee
Confidence            57777877  5666666666676788999999987664443   344444 899999998 6777888989999999999


Q ss_pred             EeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636          114 LDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV  166 (219)
Q Consensus       114 l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~  166 (219)
                      ++.|.+..  ...+..+-+|..|++. +.+..-.-....+.+|+|+++.+.+++
T Consensus       359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            99988765  4667788888888887 444321123346778999998888765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.46  E-value=2e-08  Score=73.22  Aligned_cols=130  Identities=21%  Similarity=0.179  Sum_probs=45.4

Q ss_pred             hccCCCCeEEEEecCCCcccccccCCC-cccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636           56 ANLENLESLTVLMASKDEILDLQSLSS-PPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL  133 (219)
Q Consensus        56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  133 (219)
                      .+..++++|++.++.....   +.+.. .. +|+.|+++. .++.++ .+..+++|+.|++++|.+..........+|+|
T Consensus        16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~-~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI---ENLGATLD-KLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             -----------------------S--TT-T-T--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccccc---cchhhhhc-CCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            3445689999999766543   33332 33 899999998 777765 46678999999999999987532222468999


Q ss_pred             ceeeec-cccCCceEEEccCCCcccceeeecccCCcceE---EEcCCcccccceeeeecCC
Q 042636          134 LELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSV---IIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       134 ~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~p~L~~L~l~~~~  190 (219)
                      +.|+++ +.+..-.-......+|+|+.|++.+++....-   .+....+|+|+.|+-....
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence            999998 44422111122346899999999987754320   0111247999988876654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.33  E-value=1.6e-06  Score=76.71  Aligned_cols=36  Identities=17%  Similarity=0.194  Sum_probs=18.9

Q ss_pred             cccCCcccccccccccccccc-ChHhHHHHhcccccceeeee
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIR   42 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~   42 (219)
                      +.+|+.+..  +|+.|++..+ ...+|.   ..++|++|+++
T Consensus       214 tsLP~~l~~--~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs  250 (788)
T PRK15387        214 TTLPDCLPA--HITTLVIPDNNLTSLPA---LPPELRTLEVS  250 (788)
T ss_pred             CcCCcchhc--CCCEEEccCCcCCCCCC---CCCCCcEEEec
Confidence            456665542  5666665555 333332   24566666666

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.32  E-value=5.9e-08  Score=75.39  Aligned_cols=123  Identities=21%  Similarity=0.212  Sum_probs=95.5

Q ss_pred             ccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCcc
Q 042636           10 SLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQ   88 (219)
Q Consensus        10 ~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~   88 (219)
                      ..+.|++++++.+ ...+.+++.-++.+|.|+++.  +....+ ..++.+.+|..||+++|...+.   .+|.....+++
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~--N~i~~v-~nLa~L~~L~~LDLS~N~Ls~~---~Gwh~KLGNIK  355 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ--NRIRTV-QNLAELPQLQLLDLSGNLLAEC---VGWHLKLGNIK  355 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccc--cceeee-hhhhhcccceEeecccchhHhh---hhhHhhhcCEe
Confidence            3567889999888 777888888899999999994  332222 3478889999999999866443   34433334999


Q ss_pred             EEEecc-cCCCCChhhhcCCCccEEEEeeecCCCC-CCccccCCCccceeeec
Q 042636           89 RLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTED-PLRVPHALPNLLELRLG  139 (219)
Q Consensus        89 ~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~  139 (219)
                      +|.+.+ .++.+. .+.++=+|..||+++|+|... ....++.+|.|+.+.+.
T Consensus       356 tL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~  407 (490)
T KOG1259|consen  356 TLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT  407 (490)
T ss_pred             eeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence            999988 666654 667888999999999999874 35678999999999987

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.29  E-value=1.3e-07  Score=75.72  Aligned_cols=83  Identities=22%  Similarity=0.224  Sum_probs=53.4

Q ss_pred             hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceE-EEccCCCcccceeeecccCCcceEEEcCCcc--
Q 042636          103 IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLF-HFEAGWFPKLQILTLFDFVAVKSVIIEKGAM--  178 (219)
Q Consensus       103 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--  178 (219)
                      +..+++|+++++++|.++.....+|.....++.|.+. +..  ..+ .....++..|+.|+++++. +..  +.+++|  
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l--~~v~~~~f~~ls~L~tL~L~~N~-it~--~~~~aF~~  344 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL--EFVSSGMFQGLSGLKTLSLYDNQ-ITT--VAPGAFQT  344 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH--HHHHHHhhhccccceeeeecCCe-eEE--Eecccccc
Confidence            5678899999999999888777888889999998886 222  111 1112345677788887643 443  233333  


Q ss_pred             -cccceeeeecCC
Q 042636          179 -PDIRELGIGPFP  190 (219)
Q Consensus       179 -p~L~~L~l~~~~  190 (219)
                       -+|.+|++..+|
T Consensus       345 ~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  345 LFSLSTLNLLSNP  357 (498)
T ss_pred             cceeeeeehccCc
Confidence             456666666544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=4.3e-08  Score=75.96  Aligned_cols=177  Identities=21%  Similarity=0.156  Sum_probs=105.8

Q ss_pred             cccccccccc--Ch-HhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccE
Q 042636           13 DLQKLSIIEA--DS-QVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQR   89 (219)
Q Consensus        13 ~L~~L~~~~~--~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~   89 (219)
                      ++|+|++++.  .. ....-+..+.+|+.|.+.+ ......++..+++-.+|+.|+++.++.-......-+......|++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            5777777765  22 2223356677788787773 344456677777778888888877654322111111111126777


Q ss_pred             EEecc-c-CCC-CChhhhcC-CCccEEEEeeecCC--CCCCccc-cCCCccceeeeccccC-CceEEEccCCCcccceee
Q 042636           90 LYLTG-N-MKK-LPDWIFKL-KNVIRLGLDLSGLT--EDPLRVP-HALPNLLELRLGGTYN-YKLFHFEAGWFPKLQILT  161 (219)
Q Consensus        90 L~l~~-~-~~~-l~~~~~~l-~~L~~L~l~~~~~~--~~~~~~l-~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~  161 (219)
                      |.++. . .++ +...+.+. ++|+.|.++++.-.  ..+...+ ..+|+|.+|+++++.. .+........|+.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            77764 1 111 22223333 57788888877432  2233333 3689999999984432 222233456789999999


Q ss_pred             ecccCCcc-eEEEcCCcccccceeeeecCC
Q 042636          162 LFDFVAVK-SVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       162 l~~~~~~~-~~~~~~~~~p~L~~L~l~~~~  190 (219)
                      +..|-.+. +..++.+.+|.|..|++.+|=
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            98775442 333456678999999999874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=2.3e-07  Score=75.17  Aligned_cols=138  Identities=17%  Similarity=0.167  Sum_probs=86.3

Q ss_pred             hHHHHhcccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCccccc-ccCCCcccCccEEEecc-cCCCCChh
Q 042636           26 VLKELMKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDL-QSLSSPPQYLQRLYLTG-NMKKLPDW  102 (219)
Q Consensus        26 ~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~-~~~~l~~~  102 (219)
                      +.+.-.++.+||...+.. .....+. -+-...+++++.||++.|-.....+. .....+| +|+.|.++. .+...-..
T Consensus       113 i~akQsn~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~~s  190 (505)
T KOG3207|consen  113 IAAKQSNLKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLP-SLENLNLSSNRLSNFISS  190 (505)
T ss_pred             HHHHhhhHHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcc-cchhcccccccccCCccc
Confidence            333335677888888874 1111111 03457789999999999866555442 3333445 999999987 44322111


Q ss_pred             --hhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636          103 --IFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV  166 (219)
Q Consensus       103 --~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~  166 (219)
                        -..+++|+.|.++.|.+++.+ .+.+..+|+|+.|+++ +.... .......-++.|+.|++.+++
T Consensus       191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCc
Confidence              246789999999999998754 4566789999999998 42111 112223335667777776543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.17  E-value=1.1e-06  Score=72.83  Aligned_cols=175  Identities=23%  Similarity=0.272  Sum_probs=104.0

Q ss_pred             cccccccccccccc-ChHhHHHHhccc-ccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636            9 GSLMDLQKLSIIEA-DSQVLKELMKLR-QLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY   86 (219)
Q Consensus         9 ~~l~~L~~L~~~~~-~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   86 (219)
                      ..++.++.|++.++ ...++...+.+. +|+.|+++  .+....++..+..+++|+.|+++.|...+.....  ...+ +
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~--~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~--~~~~-~  187 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS--DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL--SNLS-N  187 (394)
T ss_pred             hcccceeEEecCCcccccCccccccchhhccccccc--ccchhhhhhhhhccccccccccCCchhhhhhhhh--hhhh-h
Confidence            33445566665555 555566666664 78888777  4555555566777888888888777654442211  1233 7


Q ss_pred             ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeeccc
Q 042636           87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDF  165 (219)
Q Consensus        87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  165 (219)
                      ++.|++++ .+..+|........|+.+.++.|.+... ...+..+.++..+.+..... .......+..+.++.|++.++
T Consensus       188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             hhheeccCCccccCchhhhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCcee-eeccchhccccccceeccccc
Confidence            88888877 6777776655666788888877743332 34455666666666541111 111223345566778777754


Q ss_pred             CCcceEEEcCCcccccceeeeecCCCC
Q 042636          166 VAVKSVIIEKGAMPDIRELGIGPFPLW  192 (219)
Q Consensus       166 ~~~~~~~~~~~~~p~L~~L~l~~~~~l  192 (219)
                      . +..+.. .+.+.+++.|++.+....
T Consensus       266 ~-i~~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         266 Q-ISSISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             c-cccccc-ccccCccCEEeccCcccc
Confidence            3 444443 445677777777765443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.15  E-value=1.6e-06  Score=51.95  Aligned_cols=54  Identities=33%  Similarity=0.410  Sum_probs=35.2

Q ss_pred             CccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           86 YLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      +|++|+++. .++.+| .++..+++|++|++++|.+...+...+..+++|++|+++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~   57 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS   57 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc
Confidence            566666665 555554 345666777777777777766555666777777777765

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.11  E-value=2.9e-06  Score=70.21  Aligned_cols=156  Identities=22%  Similarity=0.235  Sum_probs=101.6

Q ss_pred             CcccCCcccccc-cccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636            1 VAKVHRGLGSLM-DLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         1 i~~lP~~l~~l~-~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      |..+|+....+. +|++|++..+ ...++..++.+++|+.|++.  .+...+++.....++.|+.|+++++.......  
T Consensus       128 i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~--~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~--  203 (394)
T COG4886         128 ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS--FNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP--  203 (394)
T ss_pred             cccCccccccchhhcccccccccchhhhhhhhhccccccccccC--CchhhhhhhhhhhhhhhhheeccCCccccCch--
Confidence            456788777775 9999998887 56666788999999999998  56666666655578889999998876644422  


Q ss_pred             cCCCcccCccEEEeccc-CCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCccc
Q 042636           79 SLSSPPQYLQRLYLTGN-MKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKL  157 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  157 (219)
                       ....+.+|+++.+..+ ....+..+..+.++..+.+..+++... ...++.+++++.|+++++.... +.. .+....+
T Consensus       204 -~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l  279 (394)
T COG4886         204 -EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISS-ISS-LGSLTNL  279 (394)
T ss_pred             -hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhccccccceeccccccccc-ccc-ccccCcc
Confidence             1112325777777763 555555666667777777666655442 3445666777777776332221 222 3345666


Q ss_pred             ceeeecc
Q 042636          158 QILTLFD  164 (219)
Q Consensus       158 ~~L~l~~  164 (219)
                      +.|++.+
T Consensus       280 ~~L~~s~  286 (394)
T COG4886         280 RELDLSG  286 (394)
T ss_pred             CEEeccC
Confidence            6666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.04  E-value=1.4e-07  Score=78.84  Aligned_cols=164  Identities=17%  Similarity=0.145  Sum_probs=118.0

Q ss_pred             cccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-
Q 042636           17 LSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-   94 (219)
Q Consensus        17 L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-   94 (219)
                      .++..+ ..++|.++..+..|..+.+.  .+....++..++++..|..|+++.|+.....  ..++..  -|+.|.++. 
T Consensus        80 aDlsrNR~~elp~~~~~f~~Le~liLy--~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp--~~lC~l--pLkvli~sNN  153 (722)
T KOG0532|consen   80 ADLSRNRFSELPEEACAFVSLESLILY--HNCIRTIPEAICNLEALTFLDLSSNQLSHLP--DGLCDL--PLKVLIVSNN  153 (722)
T ss_pred             hhccccccccCchHHHHHHHHHHHHHH--hccceecchhhhhhhHHHHhhhccchhhcCC--hhhhcC--cceeEEEecC
Confidence            344444 56677777777777777776  4556667778888888999999887664442  233333  488888876 


Q ss_pred             cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEE
Q 042636           95 NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVII  173 (219)
Q Consensus        95 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  173 (219)
                      +++.+|..++..+.|..|+.+.|.+... +..++++.+|+.|.+. +....  ++.+...+ .|.+|+++ |+++..+++
T Consensus       154 kl~~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~--lp~El~~L-pLi~lDfS-cNkis~iPv  228 (722)
T KOG0532|consen  154 KLTSLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLED--LPEELCSL-PLIRLDFS-CNKISYLPV  228 (722)
T ss_pred             ccccCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhh--CCHHHhCC-ceeeeecc-cCceeecch
Confidence            7888888888888999999999988765 3567788889888887 44321  22222233 47788888 566888888


Q ss_pred             cCCcccccceeeeecCCC
Q 042636          174 EKGAMPDIRELGIGPFPL  191 (219)
Q Consensus       174 ~~~~~p~L~~L~l~~~~~  191 (219)
                      ....|..|+.|.+.++|.
T Consensus       229 ~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             hhhhhhhheeeeeccCCC
Confidence            888899999999998763

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.02  E-value=1.1e-06  Score=69.38  Aligned_cols=89  Identities=18%  Similarity=0.131  Sum_probs=46.2

Q ss_pred             hhhcCCCccEEEEeeecCCCCC----CccccCCCccceeeeccccCCceEE-----EccCCCcccceeeecccCCcce--
Q 042636          102 WIFKLKNVIRLGLDLSGLTEDP----LRVPHALPNLLELRLGGTYNYKLFH-----FEAGWFPKLQILTLFDFVAVKS--  170 (219)
Q Consensus       102 ~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~--  170 (219)
                      .+.++++|+.|++.+|.++...    -..+..|++|+.+++.+|...+.-.     -....+|.|+.+.+.++..-.+  
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~  287 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA  287 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence            3456677777777776654421    1234556677777776443221111     0112366777777665432211  


Q ss_pred             --EEEcCCcccccceeeeecCC
Q 042636          171 --VIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       171 --~~~~~~~~p~L~~L~l~~~~  190 (219)
                        +....+..|.|..|++.+|.
T Consensus       288 ~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  288 LALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHHHhcchhhHHhcCCccc
Confidence              11122336777777777764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.95  E-value=6.7e-06  Score=49.24  Aligned_cols=57  Identities=30%  Similarity=0.273  Sum_probs=39.6

Q ss_pred             CCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEE-EccCCCcccceeeeccc
Q 042636          107 KNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFH-FEAGWFPKLQILTLFDF  165 (219)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~-~~~~~~~~L~~L~l~~~  165 (219)
                      ++|++|++++|.+...+...+..+++|+.|+++ +..  ..+. ....++++|++|++.++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l--~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL--TSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE--SEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc--CccCHHHHcCCCCCCEEeCcCC
Confidence            468889998888887777788888888888887 333  2222 12345667777777654

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.93  E-value=7.9e-07  Score=74.45  Aligned_cols=116  Identities=20%  Similarity=0.239  Sum_probs=81.9

Q ss_pred             cccCCcccccccccccccccc-----------------------ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhcc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-----------------------DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANL   58 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-----------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l   58 (219)
                      ..+|..++++..|.+++++.+                       ....|++++-+..|..|+.+  .+....+++.++++
T Consensus       111 r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s--~nei~slpsql~~l  188 (722)
T KOG0532|consen  111 RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVS--KNEIQSLPSQLGYL  188 (722)
T ss_pred             eecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhh--hhhhhhchHHhhhH
Confidence            456777777777777766554                       23344555555566666666  45566777888888


Q ss_pred             CCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCC
Q 042636           59 ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDP  123 (219)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~  123 (219)
                      .+|+.|.+..|+.....+  .+..+  .|.+|+++. .+..+|-.+.+|++|+.|.|.+|.+...+
T Consensus       189 ~slr~l~vrRn~l~~lp~--El~~L--pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLEDLPE--ELCSL--PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             HHHHHHHHhhhhhhhCCH--HHhCC--ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence            889988888877655433  22222  588899987 77888988999999999999888886643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.88  E-value=1.6e-05  Score=70.01  Aligned_cols=104  Identities=25%  Similarity=0.192  Sum_probs=48.8

Q ss_pred             cccceeeeeeCCCChhHHHHHHhc-cCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccE
Q 042636           34 RQLRKLGIRPKNGNGKDVCALIAN-LENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIR  111 (219)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~  111 (219)
                      .+|++|++++.......-+..++. +++|+.|.+++.......-..-..++| +|..|++++ +++.+ ..+..+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp-NL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP-NLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccC-ccceeecCCCCccCc-HHHhccccHHH
Confidence            356666665411112222223333 356666666554332221111122233 666666665 55544 34455666666


Q ss_pred             EEEeeecCCC-CCCccccCCCccceeeec
Q 042636          112 LGLDLSGLTE-DPLRVPHALPNLLELRLG  139 (219)
Q Consensus       112 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~  139 (219)
                      |.+.+-.+.. .+...+-++.+|+.|+++
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS  228 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDIS  228 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeecc
Confidence            6665544443 223344456666666665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=3.2e-05  Score=60.33  Aligned_cols=85  Identities=19%  Similarity=0.274  Sum_probs=62.5

Q ss_pred             cccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCC--CCChhhhcCC
Q 042636           32 KLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMK--KLPDWIFKLK  107 (219)
Q Consensus        32 ~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~--~l~~~~~~l~  107 (219)
                      ..+.++.+++.+ ....+.++...+.+|+.|++|+++.|.....+  .+++-+..+|+.|.+.+ ++.  .....+..++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            467889999987 45567788888999999999999998776553  34432223999999987 543  3455566777


Q ss_pred             CccEEEEeeec
Q 042636          108 NVIRLGLDLSG  118 (219)
Q Consensus       108 ~L~~L~l~~~~  118 (219)
                      .++.|+++.|.
T Consensus       147 ~vtelHmS~N~  157 (418)
T KOG2982|consen  147 KVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhccch
Confidence            77888887773

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.81  E-value=9.1e-06  Score=71.53  Aligned_cols=52  Identities=17%  Similarity=0.237  Sum_probs=25.4

Q ss_pred             CccEEEecc-cCC--CCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           86 YLQRLYLTG-NMK--KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        86 ~L~~L~l~~-~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      +|++|.+.+ .+.  ++..-..++++|..||+|++.+...  .+++++.+|+.|.+.
T Consensus       149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMR  203 (699)
T ss_pred             ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhcc
Confidence            555555554 221  1222223555566666655555442  445555555555553

>PLN03150 hypothetical protein; Provisional

Probab=97.77  E-value=1.8e-05  Score=69.39  Aligned_cols=102  Identities=17%  Similarity=0.250  Sum_probs=75.5

Q ss_pred             ccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEE
Q 042636           14 LQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLY   91 (219)
Q Consensus        14 L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~   91 (219)
                      ++.|++.++  .+.+|.+++++++|+.|+++. +...+.++..++++++|+.|++++|......+ +.+..++ +|+.|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~-~L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSG-NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLT-SLRILN  496 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCC-CCCEEE
Confidence            556676666  567888899999999999983 44455777788999999999999987765443 3455555 899999


Q ss_pred             ecc-cCC-CCChhhhcC-CCccEEEEeeec
Q 042636           92 LTG-NMK-KLPDWIFKL-KNVIRLGLDLSG  118 (219)
Q Consensus        92 l~~-~~~-~l~~~~~~l-~~L~~L~l~~~~  118 (219)
                      +++ .+. .+|..+... .++..+++.+|.
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCc
Confidence            987 555 478776543 466788887764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.70  E-value=9.3e-07  Score=71.02  Aligned_cols=115  Identities=21%  Similarity=0.159  Sum_probs=67.0

Q ss_pred             ChHhH-HHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC
Q 042636           23 DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP  100 (219)
Q Consensus        23 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~  100 (219)
                      ...+| ..|+.+++||.|+++. +....-.+.+++++.+|-.|-+.+++....++-..+.+.. .++.|.+.. ++..++
T Consensus        79 I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~-slqrLllNan~i~Cir  156 (498)
T KOG4237|consen   79 ISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS-SLQRLLLNANHINCIR  156 (498)
T ss_pred             cccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH-HHHHHhcChhhhcchh
Confidence            33344 4478888888888883 3333334556777777766666664443333323333343 777777765 555543


Q ss_pred             -hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636          101 -DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus       101 -~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                       ..+..++++..|.+-+|.+....-..+..+..++.+.+.
T Consensus       157 ~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA  196 (498)
T KOG4237|consen  157 QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA  196 (498)
T ss_pred             HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence             345667777777777776655444455555566655554

>PLN03150 hypothetical protein; Provisional

Probab=97.59  E-value=0.00012  Score=64.16  Aligned_cols=79  Identities=20%  Similarity=0.248  Sum_probs=44.2

Q ss_pred             ccEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636           87 LQRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF  163 (219)
Q Consensus        87 L~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~  163 (219)
                      ++.|++.. .+. .+|..+..+++|+.|++++|.+.+..+..++.+++|+.|+++ +...+. ++...+.+++|+.|++.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECc
Confidence            45555554 333 355566666666666666666655444455666666666666 333322 33334456666666666


Q ss_pred             ccC
Q 042636          164 DFV  166 (219)
Q Consensus       164 ~~~  166 (219)
                      ++.
T Consensus       499 ~N~  501 (623)
T PLN03150        499 GNS  501 (623)
T ss_pred             CCc
Confidence            543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.57  E-value=2.8e-05  Score=61.64  Aligned_cols=157  Identities=17%  Similarity=0.188  Sum_probs=79.7

Q ss_pred             cccccceeeeeeCCCC----hhHHHHHHhccCCCCeEEEEecCCCcccc------------cccCCCcccCccEEEecc-
Q 042636           32 KLRQLRKLGIRPKNGN----GKDVCALIANLENLESLTVLMASKDEILD------------LQSLSSPPQYLQRLYLTG-   94 (219)
Q Consensus        32 ~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~------------~~~~~~~~~~L~~L~l~~-   94 (219)
                      ..++|++++++. +-.    ...+-.-+..+..|++|.+.+|.......            .......+ .|+.+.... 
T Consensus        90 ~~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~-~Lrv~i~~rN  167 (382)
T KOG1909|consen   90 GCPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKP-KLRVFICGRN  167 (382)
T ss_pred             cCCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCc-ceEEEEeecc
Confidence            344666666663 111    12222334445566666666655421100            01122223 666666655 


Q ss_pred             cCCCCC-----hhhhcCCCccEEEEeeecCCCCCC----ccccCCCccceeeec-cccCCc---eEEEccCCCcccceee
Q 042636           95 NMKKLP-----DWIFKLKNVIRLGLDLSGLTEDPL----RVPHALPNLLELRLG-GTYNYK---LFHFEAGWFPKLQILT  161 (219)
Q Consensus        95 ~~~~l~-----~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~-~~~~~~---~~~~~~~~~~~L~~L~  161 (219)
                      .+...+     ..+...+.|+.+.+..|.|.....    ..+.++++|+.|++. +.+...   .+......+++|+.+.
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            333322     224455777888887777765432    345678888888887 333211   0111123467788888


Q ss_pred             ecccCCcce--EEE---cCCcccccceeeeecCC
Q 042636          162 LFDFVAVKS--VII---EKGAMPDIRELGIGPFP  190 (219)
Q Consensus       162 l~~~~~~~~--~~~---~~~~~p~L~~L~l~~~~  190 (219)
                      +.+|.--..  ..+   -....|+|+.|.+.+|.
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence            877642111  000   01236888888888875

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.40  E-value=0.00066  Score=55.98  Aligned_cols=55  Identities=18%  Similarity=0.230  Sum_probs=26.3

Q ss_pred             HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc--cCCCCChhhhcCCCccEEEEeee
Q 042636           55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG--NMKKLPDWIFKLKNVIRLGLDLS  117 (219)
Q Consensus        55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~l~~~~~~l~~L~~L~l~~~  117 (219)
                      +..+.+++.|++++|....      ++..|.+|++|.+..  .++.+|..+  ..+|++|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~s------LP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES------LPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc------cCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            4445566666666542211      112233566666653  344444332  245666666555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.34  E-value=0.0002  Score=39.73  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=22.6

Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCC
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTE  121 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~  121 (219)
                      +|++|++++ .++.+|+.+..+++|+.|++++|.+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            566666666 666666656677777777777776653

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=8.8e-05  Score=57.99  Aligned_cols=65  Identities=18%  Similarity=0.101  Sum_probs=41.7

Q ss_pred             cCCCccEEEEeeecCCCCC-CccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcc
Q 042636          105 KLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVK  169 (219)
Q Consensus       105 ~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  169 (219)
                      .++++..+.+..|.+.... -.....+|.+..|.+. +.+..-.-.-+..+|++|..|++.+.+-+.
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            4678888888888775532 3345567777788887 443221112234678999999988766444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.10  E-value=0.00039  Score=38.56  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             cccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCC
Q 042636           34 RQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKD   72 (219)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   72 (219)
                      ++|++|+++  .+....++..+++|++|+.|++++|...
T Consensus         1 ~~L~~L~l~--~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLS--NNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEET--SSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEcc--CCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            356666666  3344445555666777777777666543

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.05  E-value=3.8e-05  Score=66.57  Aligned_cols=110  Identities=24%  Similarity=0.201  Sum_probs=72.7

Q ss_pred             ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCCh
Q 042636           23 DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPD  101 (219)
Q Consensus        23 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~  101 (219)
                      ......++.-++.++.|+++.  +-... +..+..+.+|++||+++|.....   +.+.+....|+.|.++. .++.+. 
T Consensus       176 L~~mD~SLqll~ale~LnLsh--Nk~~~-v~~Lr~l~~LkhLDlsyN~L~~v---p~l~~~gc~L~~L~lrnN~l~tL~-  248 (1096)
T KOG1859|consen  176 LVLMDESLQLLPALESLNLSH--NKFTK-VDNLRRLPKLKHLDLSYNCLRHV---PQLSMVGCKLQLLNLRNNALTTLR-  248 (1096)
T ss_pred             HHhHHHHHHHHHHhhhhccch--hhhhh-hHHHHhcccccccccccchhccc---cccchhhhhheeeeecccHHHhhh-
Confidence            334445566678888888883  22222 23677888899999988765443   23333333688888887 566553 


Q ss_pred             hhhcCCCccEEEEeeecCCCC-CCccccCCCccceeeec
Q 042636          102 WIFKLKNVIRLGLDLSGLTED-PLRVPHALPNLLELRLG  139 (219)
Q Consensus       102 ~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~  139 (219)
                      .+.++.+|+.||+++|-+.+. ....+..+..|+.|++.
T Consensus       249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le  287 (1096)
T KOG1859|consen  249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE  287 (1096)
T ss_pred             hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence            567888999999998877652 23445566777777775

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.00  E-value=0.0004  Score=53.77  Aligned_cols=182  Identities=18%  Similarity=0.115  Sum_probs=90.3

Q ss_pred             ccccccccccccccc--ChHhHHH----Hhcccccceeeeee--CCCC-hhHHHHHH---------hccCCCCeEEEEec
Q 042636            8 LGSLMDLQKLSIIEA--DSQVLKE----LMKLRQLRKLGIRP--KNGN-GKDVCALI---------ANLENLESLTVLMA   69 (219)
Q Consensus         8 l~~l~~L~~L~~~~~--~~~~~~~----l~~l~~L~~L~l~~--~~~~-~~~~~~~l---------~~l~~L~~L~l~~~   69 (219)
                      +-++++||..+++++  ...+++.    +.+-+.|.+|.+..  .+.. .+.+-.++         ++-+.|++.....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            345666777776666  3333332    44556677776664  1111 11111111         22356666666555


Q ss_pred             CCCcccc--cccCCCcccCccEEEecc-cCCC--C----ChhhhcCCCccEEEEeeecCCCCCC----ccccCCCcccee
Q 042636           70 SKDEILD--LQSLSSPPQYLQRLYLTG-NMKK--L----PDWIFKLKNVIRLGLDLSGLTEDPL----RVPHALPNLLEL  136 (219)
Q Consensus        70 ~~~~~~~--~~~~~~~~~~L~~L~l~~-~~~~--l----~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L  136 (219)
                      .......  +........+|+.+.+.. .++.  +    .-.+..+++|+.||+.+|.++....    .++..|+.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            4422211  111011112566666653 2321  1    1123456788888888877654322    235567888888


Q ss_pred             eeccccCCceE------EEccCCCcccceeeecccCCcceEE-------EcCCcccccceeeeecC
Q 042636          137 RLGGTYNYKLF------HFEAGWFPKLQILTLFDFVAVKSVI-------IEKGAMPDIRELGIGPF  189 (219)
Q Consensus       137 ~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~p~L~~L~l~~~  189 (219)
                      .+.+|.....-      .+....+|+|+.|...++..-.++.       ++.+++|-|..|.+.++
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN  313 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN  313 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence            88755433211      0111236778888776543322221       23456788877777764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.86  E-value=0.0014  Score=48.53  Aligned_cols=76  Identities=20%  Similarity=0.211  Sum_probs=37.9

Q ss_pred             CCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhh-cCCCccEEEEeeecCCCC-CCccccCCCcccee
Q 042636           60 NLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIF-KLKNVIRLGLDLSGLTED-PLRVPHALPNLLEL  136 (219)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~-~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L  136 (219)
                      +...+|+++|.....   ..++.++ .|..|.+.. .+..+.+.+. .+++|+.|.+++|.+... +...+..+|+|++|
T Consensus        43 ~~d~iDLtdNdl~~l---~~lp~l~-rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL---DNLPHLP-RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchhhc---ccCCCcc-ccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            445555555443222   3333344 666666654 4554443443 334566666666655442 23445555666655


Q ss_pred             eec
Q 042636          137 RLG  139 (219)
Q Consensus       137 ~l~  139 (219)
                      .+-
T Consensus       119 tll  121 (233)
T KOG1644|consen  119 TLL  121 (233)
T ss_pred             eec
Confidence            553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.77  E-value=0.00021  Score=59.68  Aligned_cols=102  Identities=25%  Similarity=0.334  Sum_probs=61.2

Q ss_pred             HhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCC
Q 042636           30 LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKN  108 (219)
Q Consensus        30 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~  108 (219)
                      +..+++|+.+++.  .+....+...+..+.+|++|++++|...+...   +..++ .|+.|++.+ .++.+. .+..+..
T Consensus        91 l~~~~~l~~l~l~--~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~-~L~~L~l~~N~i~~~~-~~~~l~~  163 (414)
T KOG0531|consen   91 LSKLKSLEALDLY--DNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---LSTLT-LLKELNLSGNLISDIS-GLESLKS  163 (414)
T ss_pred             cccccceeeeecc--ccchhhcccchhhhhcchheeccccccccccc---hhhcc-chhhheeccCcchhcc-CCccchh
Confidence            5566677777666  33333333325667778888887766544433   33333 577777776 454443 3444777


Q ss_pred             ccEEEEeeecCCCCCC-ccccCCCccceeeec
Q 042636          109 VIRLGLDLSGLTEDPL-RVPHALPNLLELRLG  139 (219)
Q Consensus       109 L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~  139 (219)
                      |+.+++++|.+..... . ...+.+++.+++.
T Consensus       164 L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~  194 (414)
T KOG0531|consen  164 LKLLDLSYNRIVDIENDE-LSELISLEELDLG  194 (414)
T ss_pred             hhcccCCcchhhhhhhhh-hhhccchHHHhcc
Confidence            7888887777665322 1 4667777777765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.59  E-value=8e-05  Score=64.67  Aligned_cols=106  Identities=23%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636           55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL  133 (219)
Q Consensus        55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  133 (219)
                      +.=++.|+.|++++|+..+..   .+...+ .|++|+++. ++..+|..-..--.|+.|.+++|.+..  ...+.++.+|
T Consensus       183 Lqll~ale~LnLshNk~~~v~---~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t--L~gie~LksL  256 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVD---NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT--LRGIENLKSL  256 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhH---HHHhcc-cccccccccchhccccccchhhhhheeeeecccHHHh--hhhHHhhhhh
Confidence            333467888888887665543   334444 788888876 666666332222347888888877665  3556778888


Q ss_pred             ceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636          134 LELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV  166 (219)
Q Consensus       134 ~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~  166 (219)
                      +.|+++ +...+-.--.+.+.+..|+.|.+.+++
T Consensus       257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            888887 444221101122334556666665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.91  E-value=0.02  Score=42.64  Aligned_cols=63  Identities=25%  Similarity=0.115  Sum_probs=30.5

Q ss_pred             hcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636          104 FKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV  166 (219)
Q Consensus       104 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~  166 (219)
                      ..++.|++|.+..|+|...+...-..+|+|..|.+. +....-.-..+...+|.|++|.+.+++
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence            355666666666666655443333345666666665 222110001122345666666665443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.87  E-value=0.00027  Score=54.84  Aligned_cols=77  Identities=25%  Similarity=0.265  Sum_probs=51.2

Q ss_pred             cCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCC-CccccCCCccce
Q 042636           58 LENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLE  135 (219)
Q Consensus        58 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~  135 (219)
                      +.+.+.|+..++...+.   .....|+ .|+.|.++. .++.+. .+..+++|+.|+|..|.|.+.+ +.-+.++|+|+.
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~kMp-~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEKMP-LLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHhcc-cceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            45567777766655433   3344555 788887776 555553 4567788888888888776643 455677888888


Q ss_pred             eeec
Q 042636          136 LRLG  139 (219)
Q Consensus       136 L~l~  139 (219)
                      |+|.
T Consensus        93 LWL~   96 (388)
T KOG2123|consen   93 LWLD   96 (388)
T ss_pred             Hhhc
Confidence            8876

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.45  E-value=0.00045  Score=53.64  Aligned_cols=99  Identities=24%  Similarity=0.304  Sum_probs=65.9

Q ss_pred             ccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC--hhhhcCCCc
Q 042636           33 LRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP--DWIFKLKNV  109 (219)
Q Consensus        33 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~--~~~~~l~~L  109 (219)
                      +.+.++|+.++  .. -.-.+...+|+.|++|.++-|......++...   . +|++|++.. .++.+.  ..+.++++|
T Consensus        18 l~~vkKLNcwg--~~-L~DIsic~kMp~lEVLsLSvNkIssL~pl~rC---t-rLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   18 LENVKKLNCWG--CG-LDDISICEKMPLLEVLSLSVNKISSLAPLQRC---T-RLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHhhhhcccC--CC-ccHHHHHHhcccceeEEeeccccccchhHHHH---H-HHHHHHHHhcccccHHHHHHHhcCchh
Confidence            56778887773  11 12234457899999999998766554443332   2 899999987 666553  245678889


Q ss_pred             cEEEEeeecCCCCCC-----ccccCCCccceeee
Q 042636          110 IRLGLDLSGLTEDPL-----RVPHALPNLLELRL  138 (219)
Q Consensus       110 ~~L~l~~~~~~~~~~-----~~l~~l~~L~~L~l  138 (219)
                      +.|-|..|...+..-     ..+..+|+|+.|+=
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence            998888776654321     23556899988873

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.38  E-value=0.0029  Score=51.74  Aligned_cols=89  Identities=16%  Similarity=0.122  Sum_probs=44.4

Q ss_pred             hcCCCccEEEEeeecCC-CCCCcccc-CCCccceeeeccccCCc--eEEEccCCCcccceeeecccCCcceE-----EEc
Q 042636          104 FKLKNVIRLGLDLSGLT-EDPLRVPH-ALPNLLELRLGGTYNYK--LFHFEAGWFPKLQILTLFDFVAVKSV-----IIE  174 (219)
Q Consensus       104 ~~l~~L~~L~l~~~~~~-~~~~~~l~-~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~  174 (219)
                      ....+|+.+.++.|+.- ...+..++ +++.|+.+++..+..+.  .+......++.|+.+.+.+|....+-     ...
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            34567777777777532 22233333 46777777776332221  12223345667777766654433322     111


Q ss_pred             CCcccccceeeeecCCCC
Q 042636          175 KGAMPDIRELGIGPFPLW  192 (219)
Q Consensus       175 ~~~~p~L~~L~l~~~~~l  192 (219)
                      ..++..|..+.+.+|+.+
T Consensus       397 ~c~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLI  414 (483)
T ss_pred             cccccccceeeecCCCCc
Confidence            123445555556555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.34  E-value=0.001  Score=54.35  Aligned_cols=194  Identities=17%  Similarity=0.170  Sum_probs=104.5

Q ss_pred             cccccccccccccc---ChHhHHHHh-cccccceeeeeeCCCChhHHHH-HHhccCCCCeEEEEecCCCccccccc-CCC
Q 042636            9 GSLMDLQKLSIIEA---DSQVLKELM-KLRQLRKLGIRPKNGNGKDVCA-LIANLENLESLTVLMASKDEILDLQS-LSS   82 (219)
Q Consensus         9 ~~l~~L~~L~~~~~---~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~   82 (219)
                      ..+.+++.|.+..+   ++.....++ .+++|+++++............ ....+++|++++++|+.......+.. ..+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            34566777766666   444444443 4788888888721222333333 23457889999998875433211111 111


Q ss_pred             cccCccEEEeccc----------------------------CCCCChhh--hcCCCccEEEEeeecCC-CCCCccc-cCC
Q 042636           83 PPQYLQRLYLTGN----------------------------MKKLPDWI--FKLKNVIRLGLDLSGLT-EDPLRVP-HAL  130 (219)
Q Consensus        83 ~~~~L~~L~l~~~----------------------------~~~l~~~~--~~l~~L~~L~l~~~~~~-~~~~~~l-~~l  130 (219)
                      .. .++.+...++                            +++...|.  ..+..|+.++.+++... ..+.+.+ ++.
T Consensus       241 ~~-~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~  319 (483)
T KOG4341|consen  241 CK-ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC  319 (483)
T ss_pred             ch-hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence            11 2333322221                            11111111  23456777777766432 2333444 467


Q ss_pred             Cccceeeeccc--cCCceEEEccCCCcccceeeecccCCcce--EEEcCCcccccceeeeecCCCCCcchhHHhhhhhh
Q 042636          131 PNLLELRLGGT--YNYKLFHFEAGWFPKLQILTLFDFVAVKS--VIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILDQ  205 (219)
Q Consensus       131 ~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~~~  205 (219)
                      ++|+.|-++.+  +....++......+.|+.+++..+-...+  +.-...++|.|+.+.++-|....+  .|+.++.+.
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD--~gi~~l~~~  396 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD--EGIRHLSSS  396 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh--hhhhhhhhc
Confidence            88888888733  22222233344567888888876543332  222234689999999998876653  366776653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.18  E-value=0.0075  Score=50.45  Aligned_cols=82  Identities=26%  Similarity=0.203  Sum_probs=50.5

Q ss_pred             HHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCC
Q 042636           52 CALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHAL  130 (219)
Q Consensus        52 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  130 (219)
                      ...+..+++|+.|++.+|.......  .+..++ +|++|+++. .++.+. .+..+..|+.|++++|.+...  ..+..+
T Consensus        88 ~~~l~~~~~l~~l~l~~n~i~~i~~--~l~~~~-~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~--~~~~~l  161 (414)
T KOG0531|consen   88 LNHLSKLKSLEALDLYDNKIEKIEN--LLSSLV-NLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDI--SGLESL  161 (414)
T ss_pred             hcccccccceeeeeccccchhhccc--chhhhh-cchheecccccccccc-chhhccchhhheeccCcchhc--cCCccc
Confidence            3346667777777777765544432  033344 777777776 565553 445566677788877777653  344456


Q ss_pred             Cccceeeec
Q 042636          131 PNLLELRLG  139 (219)
Q Consensus       131 ~~L~~L~l~  139 (219)
                      ++|+.+++.
T Consensus       162 ~~L~~l~l~  170 (414)
T KOG0531|consen  162 KSLKLLDLS  170 (414)
T ss_pred             hhhhcccCC
Confidence            777777765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=94.87  E-value=0.0042  Score=43.40  Aligned_cols=87  Identities=16%  Similarity=0.195  Sum_probs=52.1

Q ss_pred             HHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCcccc
Q 042636           50 DVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPH  128 (219)
Q Consensus        50 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  128 (219)
                      ..+..+.+..+|...++++|.+.+..+  .+...++-++.|.+.. .+.++|..+..++.|+.+.++.|.+...+ ..+.
T Consensus        44 davy~l~~~~el~~i~ls~N~fk~fp~--kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p-~vi~  120 (177)
T KOG4579|consen   44 DAVYMLSKGYELTKISLSDNGFKKFPK--KFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEP-RVIA  120 (177)
T ss_pred             HHHHHHhCCceEEEEecccchhhhCCH--HHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccch-HHHH
Confidence            444555566666667777766544322  2222222566666665 66677777777778888888877776543 3333


Q ss_pred             CCCccceeeec
Q 042636          129 ALPNLLELRLG  139 (219)
Q Consensus       129 ~l~~L~~L~l~  139 (219)
                      .+.++.+|+..
T Consensus       121 ~L~~l~~Lds~  131 (177)
T KOG4579|consen  121 PLIKLDMLDSP  131 (177)
T ss_pred             HHHhHHHhcCC
Confidence            46666666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.83  E-value=0.011  Score=45.53  Aligned_cols=81  Identities=27%  Similarity=0.255  Sum_probs=39.1

Q ss_pred             hccCCCCeEEEEecCCCcccccccCCC-cccCccEEEecc-cCCC---CChhhhcCCCccEEEEeeecCCCCC---Cccc
Q 042636           56 ANLENLESLTVLMASKDEILDLQSLSS-PPQYLQRLYLTG-NMKK---LPDWIFKLKNVIRLGLDLSGLTEDP---LRVP  127 (219)
Q Consensus        56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~-~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~---~~~l  127 (219)
                      -.|++|+.|.++.|.......+.-+.. .| +|+++.+++ .+..   ++ .+..+++|..|++.+|......   -..+
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P-~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf  139 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAP-NLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVF  139 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCC-ceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHH
Confidence            345566666666653322221111111 13 666666665 3221   21 2345666777777666554311   1234


Q ss_pred             cCCCccceeee
Q 042636          128 HALPNLLELRL  138 (219)
Q Consensus       128 ~~l~~L~~L~l  138 (219)
                      ..+|+|++|+-
T Consensus       140 ~ll~~L~~LD~  150 (260)
T KOG2739|consen  140 LLLPSLKYLDG  150 (260)
T ss_pred             HHhhhhccccc
Confidence            45677766664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.56  E-value=0.0086  Score=50.62  Aligned_cols=15  Identities=7%  Similarity=0.310  Sum_probs=7.9

Q ss_pred             ccccceeeeecCCCC
Q 042636          178 MPDIRELGIGPFPLW  192 (219)
Q Consensus       178 ~p~L~~L~l~~~~~l  192 (219)
                      +.+++.+.+.+|+..
T Consensus       426 ~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  426 CSNLKDLDLSGCRVI  440 (482)
T ss_pred             hhccccCCccCcccc
Confidence            344555556655544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.00  E-value=0.0022  Score=47.47  Aligned_cols=86  Identities=16%  Similarity=0.158  Sum_probs=52.0

Q ss_pred             CccEEEEeeecCCCCCCccccCCCccceeeeccccCCceE--EEccCCCcccceeeecccCCcceEEEc-CCccccccee
Q 042636          108 NVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLF--HFEAGWFPKLQILTLFDFVAVKSVIIE-KGAMPDIREL  184 (219)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L  184 (219)
                      .++.++-++++|....+.-+..++.++.|.+.+|..-+..  ....+.+++|+.|++.+|+++++--.. ...+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3566777777766655556666777777777644322211  122335688888888888776542111 1347888888


Q ss_pred             eeecCCCCC
Q 042636          185 GIGPFPLWS  193 (219)
Q Consensus       185 ~l~~~~~l~  193 (219)
                      .+.+.+...
T Consensus       182 ~l~~l~~v~  190 (221)
T KOG3864|consen  182 HLYDLPYVA  190 (221)
T ss_pred             HhcCchhhh
Confidence            888766443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.95  E-value=0.007  Score=51.15  Aligned_cols=109  Identities=17%  Similarity=0.079  Sum_probs=44.6

Q ss_pred             cccccccccccc--Ch--HhHHHHhcccccceeeeee----CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCC
Q 042636           11 LMDLQKLSIIEA--DS--QVLKELMKLRQLRKLGIRP----KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSS   82 (219)
Q Consensus        11 l~~L~~L~~~~~--~~--~~~~~l~~l~~L~~L~l~~----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~   82 (219)
                      ...|+.|.+..+  ..  .........++|+.|++..    ..............+.+|+.|+++++.......+..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            344555555444  11  1233344556666666542    001111111223334566666666554211111111111


Q ss_pred             cccCccEEEeccc--CCC--CChhhhcCCCccEEEEeeecC
Q 042636           83 PPQYLQRLYLTGN--MKK--LPDWIFKLKNVIRLGLDLSGL  119 (219)
Q Consensus        83 ~~~~L~~L~l~~~--~~~--l~~~~~~l~~L~~L~l~~~~~  119 (219)
                      ...+|+.|.+..+  ++.  +-.....+++|++|++++|..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            1125666654331  221  112224456666666666544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.85  E-value=0.071  Score=41.11  Aligned_cols=103  Identities=17%  Similarity=0.098  Sum_probs=52.0

Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeee--cCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceee
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLS--GLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILT  161 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~  161 (219)
                      .++.+++.. .++.+- .+..+++|++|.++.|  .+..........+|+|+++.++ +.+..-...-+...+++|..|+
T Consensus        44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld  122 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD  122 (260)
T ss_pred             chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence            455555543 222221 2336778888888888  3333211222345888888887 3332211111223455666777


Q ss_pred             ecccCCcceEEEc----CCcccccceeeeecCC
Q 042636          162 LFDFVAVKSVIIE----KGAMPDIRELGIGPFP  190 (219)
Q Consensus       162 l~~~~~~~~~~~~----~~~~p~L~~L~l~~~~  190 (219)
                      +.+|.... ..-.    ..-+|+|+.|+-.++.
T Consensus       123 l~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  123 LFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             cccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence            76665332 1100    1125777776655554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=93.47  E-value=0.011  Score=41.32  Aligned_cols=53  Identities=26%  Similarity=0.411  Sum_probs=22.8

Q ss_pred             CccEEEecc-cCCCCChhh-hcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           86 YLQRLYLTG-NMKKLPDWI-FKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      .|+..++++ .+..+|..+ .+++.++.+.++.|.+.+.+.+ ++.||.|+.++++
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLR  108 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccc
Confidence            344444444 334444333 2333444444444444443322 4444555544444

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.88  E-value=0.17  Score=42.08  Aligned_cols=50  Identities=14%  Similarity=0.163  Sum_probs=28.2

Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeecc
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGG  140 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  140 (219)
                      ++++|+++. .++.+|   ....+|+.|.+++|.--...+..+  .++|++|.++.
T Consensus        53 ~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~  103 (426)
T PRK15386         53 ASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCH  103 (426)
T ss_pred             CCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccC
Confidence            677777776 566666   233467777776653221111111  25677777763

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.81  E-value=0.074  Score=22.80  Aligned_cols=17  Identities=18%  Similarity=0.323  Sum_probs=7.9

Q ss_pred             cccceeeeecCCCCCcch
Q 042636          179 PDIRELGIGPFPLWSMYI  196 (219)
Q Consensus       179 p~L~~L~l~~~~~l~~~~  196 (219)
                      |+|+.|++++|. ++.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            456667777665 54443

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.54  E-value=0.091  Score=41.13  Aligned_cols=84  Identities=14%  Similarity=0.075  Sum_probs=44.2

Q ss_pred             CCccEEEEeeecCCCCCC-----ccccCCCccceeeec-cccCCce---EEEccCCCcccceeeecccCCcceE------
Q 042636          107 KNVIRLGLDLSGLTEDPL-----RVPHALPNLLELRLG-GTYNYKL---FHFEAGWFPKLQILTLFDFVAVKSV------  171 (219)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~-----~~l~~l~~L~~L~l~-~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~------  171 (219)
                      .+|+.+.+..|.|.....     ..+..+.+|+.|+++ +.+.-..   +......++.|+.|.+.+|---..-      
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~  264 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR  264 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence            467777777777655422     234456778888876 3332100   0011122456778877765321100      


Q ss_pred             EEcCCcccccceeeeecCC
Q 042636          172 IIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       172 ~~~~~~~p~L~~L~l~~~~  190 (219)
                      .+...-+|+|+.|...+..
T Consensus       265 ~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         265 RFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             HhhhhcCCCccccccchhh
Confidence            0111236888888888765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.92  E-value=0.043  Score=40.84  Aligned_cols=34  Identities=26%  Similarity=0.211  Sum_probs=20.3

Q ss_pred             CCCccEEEEeee-cCCCCCCccccCCCccceeeec
Q 042636          106 LKNVIRLGLDLS-GLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus       106 l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      .++|+.|++++| +|++.....+..+++|+.|.+.
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            356666666665 3444445556666666666664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.24  E-value=0.081  Score=24.30  Aligned_cols=20  Identities=5%  Similarity=-0.134  Sum_probs=11.6

Q ss_pred             ccceeeeecCCCCCcchhHHh
Q 042636          180 DIRELGIGPFPLWSMYIFLTD  200 (219)
Q Consensus       180 ~L~~L~l~~~~~l~~~~~~~~  200 (219)
                      +|+.|++++| ++..+|.++.
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTT
T ss_pred             CccEEECCCC-cCEeCChhhc
Confidence            3566666666 5556665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=90.04  E-value=0.3  Score=23.33  Aligned_cols=16  Identities=25%  Similarity=0.453  Sum_probs=12.8

Q ss_pred             ccccceeeeecCCCCC
Q 042636          178 MPDIRELGIGPFPLWS  193 (219)
Q Consensus       178 ~p~L~~L~l~~~~~l~  193 (219)
                      +|+|+.|++.+|+++.
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4778888888888776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.53  E-value=0.15  Score=34.78  Aligned_cols=79  Identities=16%  Similarity=0.174  Sum_probs=29.9

Q ss_pred             HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecccCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636           55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL  133 (219)
Q Consensus        55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  133 (219)
                      +.++++|+.+.+... . .......+.... +++.+.+...+..++ ..+..+.+++.+.+..+ +.......+.+. ++
T Consensus        31 F~~~~~l~~i~~~~~-~-~~i~~~~F~~~~-~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l  105 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-L-TSIGDNAFSNCK-SLESITFPNNLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL  105 (129)
T ss_dssp             TTT-TT-SEEEESST-T-SCE-TTTTTT-T-T-EEEEETSTT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred             ccccccccccccccc-c-cccceeeeeccc-ccccccccccccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence            344555666655432 1 111112233333 566666643332222 23344667777776432 332223445555 66


Q ss_pred             ceeee
Q 042636          134 LELRL  138 (219)
Q Consensus       134 ~~L~l  138 (219)
                      +.+.+
T Consensus       106 ~~i~~  110 (129)
T PF13306_consen  106 KEINI  110 (129)
T ss_dssp             -EEE-
T ss_pred             eEEEE
Confidence            65555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=86.99  E-value=1.4  Score=29.94  Aligned_cols=52  Identities=13%  Similarity=0.123  Sum_probs=20.8

Q ss_pred             CccEEEecccCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeee
Q 042636           86 YLQRLYLTGNMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRL  138 (219)
Q Consensus        86 ~L~~L~l~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  138 (219)
                      +++.+.+...+..++. .+..+.+++.+.+.. .+...+...+..+++++.+.+
T Consensus        36 ~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   36 SLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             T-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             ccccccccccccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            5556655543333322 233444566666633 222222234445555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.03  E-value=0.44  Score=22.63  Aligned_cols=19  Identities=26%  Similarity=0.256  Sum_probs=11.9

Q ss_pred             CCccEEEEeeecCCCCCCc
Q 042636          107 KNVIRLGLDLSGLTEDPLR  125 (219)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~~  125 (219)
                      .+|++|++++|++...+..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4667777777766655433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.03  E-value=0.44  Score=22.63  Aligned_cols=19  Identities=26%  Similarity=0.256  Sum_probs=11.9

Q ss_pred             CCccEEEEeeecCCCCCCc
Q 042636          107 KNVIRLGLDLSGLTEDPLR  125 (219)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~~  125 (219)
                      .+|++|++++|++...+..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4667777777766655433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-04

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 14/162 (8%)

Query: 7   GLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNG-KDVCALIANLENLESLT 65
            L  L  L+ LS+       +  L+ L QL  L +     N   D    I  L  L  L 
Sbjct: 104 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL---GNNKITD----ITVLSRLTKLD 156

Query: 66  VLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDW--IFKLKNVIRLGLDLSGLTEDP 123
            L    ++I D+  L+   + LQ LYL+ N   + D   +  LKN+  L L        P
Sbjct: 157 TLSLEDNQISDIVPLAGLTK-LQNLYLSKN--HISDLRALAGLKNLDVLELFSQECLNKP 213

Query: 124 LRVPHALPNLLELR-LGGTYNYKLFHFEAGWFPKLQILTLFD 164
           +     L     ++   G+        + G + K  +     
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLP 255

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 23/162 (14%)

Query: 7   GLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTV 66
           G+  L ++ KL +       +K L  L+ L  L +  +N         +++L++L+ L  
Sbjct: 60  GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLD-ENKIKD-----LSSLKDLKKLKS 113

Query: 67  LMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGL------DLSGLT 120
           L    + I D+  L   PQ L+ LYL  N       + +L  +  L L      D+  L 
Sbjct: 114 LSLEHNGISDINGLVHLPQ-LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA 172

Query: 121 EDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTL 162
                    L  L  L L   +   L          L +L L
Sbjct: 173 G--------LTKLQNLYLSKNHISDLRALAG--LKNLDVLEL 204

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 55  IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGN--MKKLPDWIFKLKNVIRL 112
           +  +E   ++  L  +     +   +S     L+RL + G          +  L ++  L
Sbjct: 59  LTGIEYAHNIKDLTINNIHATNYNPISGLSN-LERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 113 GLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEA-GWFPKLQILTL 162
            +  S   +  L   + LP +  + L   YN  +         P+L+ L +
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLS--YNGAITDIMPLKTLPELKSLNI 166

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 13/136 (9%)

Query: 7   GLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNG-KDVCALIANLENLESLT 65
              +L +  K++  +++         L  +  L      G G       I  ++ L +L 
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAF---GTGVTT----IEGVQYLNNLI 66

Query: 66  VLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTE-DPL 124
            L    ++I DL  L +  + +  L L+GN  K    I  L+++  L L  + +T+  PL
Sbjct: 67  GLELKDNQITDLAPLKNLTK-ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL 125

Query: 125 RVPHALPNLLELRLGG 140
                L NL  L L  
Sbjct: 126 ---AGLSNLQVLYLDL 138

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 17/159 (10%)

Query: 7   GLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNG-KDVCALIANLENLESLT 65
           G+  L +L  L + +     L  L  L ++ +L +   +GN  K+    ++ +  L+S+ 
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL---SGNPLKN----VSAIAGLQSIK 110

Query: 66  VLMASKDEILDLQSLSSPPQYLQRLYLTGN-MKKLPDWIFKLKNVIRLGLDLSGLTE-DP 123
            L  +  +I D+  L+     LQ LYL  N +  +   +  L N+  L +  + +++  P
Sbjct: 111 TLDLTSTQITDVTPLAGLSN-LQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP 168

Query: 124 LRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTL 162
           L     L  L  L+        +    +   P L  + L
Sbjct: 169 L---ANLSKLTTLKADDNKISDISPLAS--LPNLIEVHL 202

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 29/174 (16%)

Query: 6   RGLGSLMDLQ----KLSIIEADSQVLKELMKLRQLR----KLGIRPKNGNGKDVCALIAN 57
             L +L +L      +   +  +  L+ L  L+ L     +                   
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA----------- 395

Query: 58  LENLESLTVLMASKDEI--LDLQSLSSPPQYLQRLYLTGN-MKKLPDWIFK-LKNVIRLG 113
            +    L +L  +   +   D QS       L+ L L+ + +    + +F  L  +  L 
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 114 LD---LSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFD 164
           L                  L  L  L L   +   L   +   F  L+++   D
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLS--FC-DLSSIDQHAFTSLKMMNHVD 506

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 13/150 (8%)

Query: 14  LQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDE 73
              L+ + A    +     L +  +  ++  +         +   E LES+T L+ + ++
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTD------VVTQEELESITKLVVAGEK 55

Query: 74  ILDLQSLSSPPQYLQRLYLTGN-MKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPN 132
           +  +Q +      L+ L L GN +  +   +  L  +  L +  + +T+  +     L N
Sbjct: 56  VASIQGIEYLTN-LEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD--ISALQNLTN 111

Query: 133 LLELRLGGTYNYKLFHFEAGWFPKLQILTL 162
           L EL L       +         K+  L L
Sbjct: 112 LRELYLNEDNISDISPLAN--LTKMYSLNL 139

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 14/157 (8%)

Query: 7   GLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTV 66
           G+  L +L +++        +  L  L +L  + +   N         I  L NL +LT 
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIAD-----ITPLANLTNLTG 116

Query: 67  LMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRV 126
           L    ++I D+  L +    L RL L+ N       +  L ++ +L          PL  
Sbjct: 117 LTLFNNQITDIDPLKNLTN-LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA- 174

Query: 127 PHALPNLLELRLGGTYNYKLFHFEA-GWFPKLQILTL 162
              L  L  L +      K+           L+ L  
Sbjct: 175 --NLTTLERLDISSN---KVSDISVLAKLTNLESLIA 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 60  NLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGN-MKKLPDWIFKLKNVIRLGLDLSG 118
               LT L   + E+  LQ   + P  L  L L+ N ++ LP     L  +  L +  + 
Sbjct: 53  PYTRLTQLNLDRAELTKLQVDGTLPV-LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111

Query: 119 LTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWF---PKLQILTLFD 164
           LT  PL     L  L EL L G  N +L     G     PKL+ L+L +
Sbjct: 112 LTSLPLGALRGLGELQELYLKG--N-ELKTLPPGLLTPTPKLEKLSLAN 157

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 12/108 (11%)

Query: 60  NLESLTVLMASKDEILDLQSLSS----PPQYLQRLYLTGN-MKKLPDWIF-KLKNVIRLG 113
            L  LT L    ++   LQ+LS+        L  L L  N +  LP  +F  L  + +L 
Sbjct: 57  GLTKLTWLNLDYNQ---LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113

Query: 114 LDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILT 161
           L  + L   P  V   L  L ELRL      +L    AG F KL  L 
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRL---NTNQLQSIPAGAFDKLTNLQ 158

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 9/113 (7%)

Query: 58  LENLESLTVLMASKDEILDLQSLS-SPPQYLQRLYLTGN--MKKLPDWIFKLKNVIRLGL 114
           L +L  L VL      I  ++  S      L+ L ++    +  +        N+  L +
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

Query: 115 DLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWF---PKLQILTLFD 164
               LT  P      L  L  L L       +   E        +LQ + L  
Sbjct: 232 THCNLTAVPYLAVRHLVYLRFLNLSYN---PISTIEGSMLHELLRLQEIQLVG 281

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 23/148 (15%), Positives = 52/148 (35%), Gaps = 6/148 (4%)

Query: 51  VCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGN-MKKLPDWIFK-LKN 108
           V +L  NL NL++L +        +     +     L  L +    ++       K +++
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-LNELEIKALSLRNYQSQSLKSIRD 173

Query: 109 VIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAV 168
           +  L L LS            L ++  L L    +  L  F+    P  ++ +    +A 
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLEL---RDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 169 KSVIIEKGAMPDIRELGIGPFPLWSMYI 196
           +  ++   +  ++ +L      L  +  
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEF 258

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.66
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.61
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.61
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.61
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.6
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.6
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.58
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.58
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.57
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.57
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.57
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.56
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.56
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.56
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.56
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.56
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.55
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.55
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.54
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.53
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.52
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.52
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.52
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.52
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.51
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.51
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.51
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.5
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.5
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.48
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.48
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.47
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.47
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.47
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.46
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.46
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.45
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.44
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.44
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.44
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.42
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.42
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.42
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.4
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.4
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.4
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.4
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.39
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.38
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.38
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.36
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.36
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.36
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.34
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.32
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.32
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.3
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.29
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.27
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.27
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.2
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.17
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.15
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.14
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.05
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.03
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.01
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.99
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.98
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.98
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.97
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.96
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.94
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.94
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.94
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.92
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.92
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.91
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.88
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.86
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.86
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.72
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.64
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.45
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.01
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.97
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.85
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.12
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.71
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.62
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	86.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	85.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	84.46
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	84.2
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	81.66
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	80.44

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=3e-22  Score=160.22  Aligned_cols=201  Identities=21%  Similarity=0.179  Sum_probs=163.2

Q ss_pred             CcccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc-
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ-   78 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-   78 (219)
                      +..+|++++++++|++|++.++ ...+|..++++++|++|+++.  +....++..+.++++|++|++++|......+.. 
T Consensus        93 l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~--n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~  170 (328)
T 4fcg_A           93 LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR--NPLRALPASIASLNRLRELSIRACPELTELPEPL  170 (328)
T ss_dssp             CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEES--CCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred             chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCC--CccccCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence            4578999999999999999988 447788899999999999994  333366677899999999999998765544311 


Q ss_pred             -------cCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEc
Q 042636           79 -------SLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFE  150 (219)
Q Consensus        79 -------~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  150 (219)
                             .+..++ +|++|++++ .++.+|.++..+++|+.|++++|.+...+ ..+..+++|+.|+++.+.....++..
T Consensus       171 ~~~~~~~~~~~l~-~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~  248 (328)
T 4fcg_A          171 ASTDASGEHQGLV-NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRNYPPI  248 (328)
T ss_dssp             EEEC-CCCEEEST-TCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC-GGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred             hhccchhhhccCC-CCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc-hhhccCCCCCEEECcCCcchhhhHHH
Confidence                   122355 999999998 78889999999999999999999998754 46889999999999943333334555


Q ss_pred             cCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhhhh
Q 042636          151 AGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILDQ  205 (219)
Q Consensus       151 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~~~  205 (219)
                      .+.+++|+.|++.++...+.++...+.+++|+.|++.+|+..+.+|.++.++.+.
T Consensus       249 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L  303 (328)
T 4fcg_A          249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN  303 (328)
T ss_dssp             TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred             hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence            6678999999999888777776666789999999999999999999998887764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.76  E-value=3.8e-19  Score=142.20  Aligned_cols=184  Identities=17%  Similarity=0.173  Sum_probs=146.0

Q ss_pred             CcccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHH---------hccCCCCeEEEEecC
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALI---------ANLENLESLTVLMAS   70 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l---------~~l~~L~~L~l~~~~   70 (219)
                      +..+|..++++++|++|++.++ ...+|..++++++|++|+++. +...+.++..+         .++++|++|++++|.
T Consensus       116 l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~-n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~  194 (328)
T 4fcg_A          116 LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA-CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG  194 (328)
T ss_dssp             CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE-ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC
T ss_pred             ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC-CCCccccChhHhhccchhhhccCCCCCEEECcCCC
Confidence            3568999999999999999988 457788899999999999995 23333333333         459999999999987


Q ss_pred             CCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEE
Q 042636           71 KDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHF  149 (219)
Q Consensus        71 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  149 (219)
                      .... + ..+..++ +|++|++++ .++.+|..+..+++|+.|++++|.+.+.....++.+++|+.|+++++.....++.
T Consensus       195 l~~l-p-~~l~~l~-~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          195 IRSL-P-ASIANLQ-NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             CCCC-C-GGGGGCT-TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             cCcc-h-HhhcCCC-CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence            7633 2 3455566 999999998 7888998899999999999999988877677889999999999984333333444


Q ss_pred             ccCCCcccceeeecccCCcceEEEcCCcccccceeeeec
Q 042636          150 EAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGP  188 (219)
Q Consensus       150 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~  188 (219)
                      ....+++|+.|++.+++..+.++...+.+++|+.+.+..
T Consensus       272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            456789999999999888887776667788888887764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.68  E-value=2.4e-18  Score=136.67  Aligned_cols=190  Identities=17%  Similarity=0.149  Sum_probs=106.5

Q ss_pred             ccCCccccccccccccccc-c--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636            3 KVHRGLGSLMDLQKLSIIE-A--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS   79 (219)
Q Consensus         3 ~lP~~l~~l~~L~~L~~~~-~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   79 (219)
                      .+|..++++++|++|++.+ +  ...+|..++++++|++|+++. +...+..+..+.++++|++|++++|......+ ..
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~  144 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PS  144 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE-ECCEEECCGGGGGCTTCCEEECCSSEEESCCC-GG
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcC-CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-hH
Confidence            4677788888888888773 4  445666777888888888874 22233444556677777777777665432221 23


Q ss_pred             CCCcccCccEEEecc-cCC-CCChhhhcCC-CccEEEEeeecCC-----------------------CCCCccccCCCcc
Q 042636           80 LSSPPQYLQRLYLTG-NMK-KLPDWIFKLK-NVIRLGLDLSGLT-----------------------EDPLRVPHALPNL  133 (219)
Q Consensus        80 ~~~~~~~L~~L~l~~-~~~-~l~~~~~~l~-~L~~L~l~~~~~~-----------------------~~~~~~l~~l~~L  133 (219)
                      +..++ +|++|++++ .++ .+|..+..+. +|+.|++++|.+.                       ......+..+++|
T Consensus       145 ~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L  223 (313)
T 1ogq_A          145 ISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             GGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCC
T ss_pred             HhcCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCC
Confidence            33344 666666665 444 3555555554 5666666555544                       3333344555566


Q ss_pred             ceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchh
Q 042636          134 LELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIF  197 (219)
Q Consensus       134 ~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~  197 (219)
                      +.|+++ +...+. +. ....+++|++|++.++...+.++...+.+++|+.|++.++.-.+.+|.
T Consensus       224 ~~L~L~~N~l~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          224 QKIHLAKNSLAFD-LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             SEEECCSSEECCB-GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             CEEECCCCceeee-cC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            666655 322211 11 123456677777665442223333334567777777776643334444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.68  E-value=3.3e-18  Score=135.91  Aligned_cols=189  Identities=15%  Similarity=0.096  Sum_probs=130.3

Q ss_pred             ccccccccccc--Ch--HhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636           12 MDLQKLSIIEA--DS--QVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL   87 (219)
Q Consensus        12 ~~L~~L~~~~~--~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L   87 (219)
                      .+++.|++.++  .+  .+|..++++++|++|+++..+...+.++..++++++|++|++++|......+ ..+..++ +|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~-~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIK-TL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCT-TC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-HHHhCCC-CC
Confidence            57888888877  44  6888999999999999982123334556678999999999999987753332 3455566 99


Q ss_pred             cEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCC-ccceeeec-cccCCc------------------
Q 042636           88 QRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALP-NLLELRLG-GTYNYK------------------  145 (219)
Q Consensus        88 ~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~-~~~~~~------------------  145 (219)
                      ++|++++ .++ .+|..+..+++|++|++++|.+.+..+..+..++ +|+.|+++ +...+.                  
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N  207 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN  207 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCC
Confidence            9999998 666 5888899999999999999998755556677777 89999887 332210                  


Q ss_pred             eEE----EccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhh
Q 042636          146 LFH----FEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHIL  203 (219)
Q Consensus       146 ~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~  203 (219)
                      .+.    .....+++|+.|++.++. +.......+.+++|+.|++.++.-.+.+|.++..+.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  268 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK  268 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHhcCc
Confidence            010    012335566666666543 221111234568888888888765445666655543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.66  E-value=1.5e-16  Score=124.51  Aligned_cols=182  Identities=20%  Similarity=0.093  Sum_probs=98.7

Q ss_pred             cccCCcccccccccccccccc-ChHhH-HHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS   79 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   79 (219)
                      ..+|.++  ..++++|++.++ ...++ ..++++++|++|+++. +......+..+.++++|++|++++|..........
T Consensus        24 ~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~  100 (285)
T 1ozn_A           24 QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT  100 (285)
T ss_dssp             SSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             ccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence            3455544  346677777666 22222 3466777777777763 22222223455667777777777765222222233


Q ss_pred             CCCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEE-ccCCCcc
Q 042636           80 LSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHF-EAGWFPK  156 (219)
Q Consensus        80 ~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~  156 (219)
                      +...+ +|++|++++ .++.+ |..+..+++|++|++++|.+...+...+..+++|+.|+++.+... .+.. ....+++
T Consensus       101 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~  178 (285)
T 1ozn_A          101 FHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHS  178 (285)
T ss_dssp             TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTT
T ss_pred             hcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccc
Confidence            44444 777777766 55554 444566677777777777766655555666777777777622111 1111 1334566


Q ss_pred             cceeeecccCCcceE-EEcCCcccccceeeeecC
Q 042636          157 LQILTLFDFVAVKSV-IIEKGAMPDIRELGIGPF  189 (219)
Q Consensus       157 L~~L~l~~~~~~~~~-~~~~~~~p~L~~L~l~~~  189 (219)
                      |+.|++.++. +..+ +...+.+++|+.|++.++
T Consensus       179 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          179 LDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCEEECCCCc-ccccCHhHccCcccccEeeCCCC
Confidence            6666666543 3332 112234566666666665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.64  E-value=1e-16  Score=125.43  Aligned_cols=187  Identities=20%  Similarity=0.177  Sum_probs=137.5

Q ss_pred             cccC-Ccccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCccccc
Q 042636            2 AKVH-RGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDL   77 (219)
Q Consensus         2 ~~lP-~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~   77 (219)
                      ..+| ..++++++|++|++.++  ....+..++++++|++|+++. +.....+ +..+.++++|++|++++|......+ 
T Consensus        45 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-  122 (285)
T 1ozn_A           45 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD-NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-  122 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-
T ss_pred             CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC-CCCccccCHHHhcCCcCCCEEECCCCcCCEECH-
Confidence            3455 45889999999999887  333466788999999999994 2213332 4567889999999999987654422 


Q ss_pred             ccCCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCc
Q 042636           78 QSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFP  155 (219)
Q Consensus        78 ~~~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  155 (219)
                      ..+...+ +|++|++++ .++.++. .+..+++|+.|++++|.+...+...+..+++|+.|+++.+............++
T Consensus       123 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  201 (285)
T 1ozn_A          123 GLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (285)
T ss_dssp             TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence            3455555 999999998 7777664 477899999999999999876666788999999999983332222223345678


Q ss_pred             ccceeeecccCCcceEEEc-CCcccccceeeeecCCCC
Q 042636          156 KLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFPLW  192 (219)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~l  192 (219)
                      +|+.|++.++. +..+... .+.+++|+.|++.+++-.
T Consensus       202 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          202 RLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCcc
Confidence            99999999764 4544322 356899999999987643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.63  E-value=1.5e-16  Score=140.40  Aligned_cols=134  Identities=20%  Similarity=0.246  Sum_probs=91.2

Q ss_pred             ccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636            3 KVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL   80 (219)
Q Consensus         3 ~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   80 (219)
                      .+|..++++++|++|++.++  .+..|..++++++|+.|+++. +...+.++..+.++++|+.|++++|......+ ..+
T Consensus       409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l  486 (768)
T 3rgz_A          409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL-NMLEGEIPQELMYVKTLETLILDFNDLTGEIP-SGL  486 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGG
T ss_pred             ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC-CcccCcCCHHHcCCCCceEEEecCCcccCcCC-HHH
Confidence            35666777777777777766  445666677777777777773 33334455566777778888887776654332 234


Q ss_pred             CCcccCccEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           81 SSPPQYLQRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        81 ~~~~~~L~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      ...+ +|++|++++ .+. .+|.++..+++|+.|++++|.+.+..+..++.+++|+.|+++
T Consensus       487 ~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          487 SNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             GGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             hcCC-CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence            4444 788888876 555 477777778888888888887765555667777888877776

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.61  E-value=8.7e-16  Score=125.29  Aligned_cols=75  Identities=12%  Similarity=0.029  Sum_probs=46.4

Q ss_pred             ccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhh
Q 042636          127 PHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHIL  203 (219)
Q Consensus       127 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~  203 (219)
                      +..+++|+.|+++.+............+++|+.|++.++. +..++...+.+|+|+.|++.+| .+..+|.++..+.
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~  318 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFD  318 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred             HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCC-cceecCccccccC
Confidence            4455666666666222222122234557788888888643 5666655566888999999887 4667776665443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.61  E-value=5.5e-16  Score=120.46  Aligned_cols=182  Identities=23%  Similarity=0.223  Sum_probs=130.2

Q ss_pred             CcccCCcccccccccccccccc-ChHhH-HHHhcccccceeeeeeCCCChhHHHH-HHhccCCCCeEEEEecCCCccccc
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA-DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCA-LIANLENLESLTVLMASKDEILDL   77 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~   77 (219)
                      ++.+|.++.  .++++|++.++ ...++ ..++++++|++|+++.  +....+.. .+.++++|++|++++|...... .
T Consensus        28 l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~  102 (270)
T 2o6q_A           28 LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND--NKLQTLPAGIFKELKNLETLWVTDNKLQALP-I  102 (270)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS--SCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-T
T ss_pred             CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC--CccCeeChhhhcCCCCCCEEECCCCcCCcCC-H
Confidence            346777665  57889998877 33333 3588899999999984  22222222 3477899999999998765432 2


Q ss_pred             ccCCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCC
Q 042636           78 QSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWF  154 (219)
Q Consensus        78 ~~~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~  154 (219)
                      ..+...+ +|++|++++ .++.++. .+..+++|++|++++|.+...+...+..+++|+.|+++ +....- .......+
T Consensus       103 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l  180 (270)
T 2o6q_A          103 GVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKL  180 (270)
T ss_dssp             TTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTC
T ss_pred             hHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-ChhHhccC
Confidence            3445555 999999998 7777654 46789999999999999988777778899999999998 433221 11123457


Q ss_pred             cccceeeecccCCcceEEEc-CCcccccceeeeecCC
Q 042636          155 PKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFP  190 (219)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~  190 (219)
                      ++|+.|++.++. +..++.. .+.+++|+.|++.+++
T Consensus       181 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          181 TELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence            899999998754 5544332 3457899999999876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.61  E-value=4.5e-17  Score=128.67  Aligned_cols=38  Identities=21%  Similarity=0.214  Sum_probs=16.6

Q ss_pred             hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636          102 WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus       102 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      ++..+++|+.|++++|.+...+...+..+++|+.|+++
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence            33444444444444444443333334444444444444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.60  E-value=2.6e-16  Score=124.32  Aligned_cols=133  Identities=17%  Similarity=0.162  Sum_probs=64.5

Q ss_pred             cccCCcccccccccccccccc-ChHhHHH-Hhcccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKE-LMKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~-l~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      +.+|.++.  .++++|++.++ ...++.+ ++++++|++|+++. .....+..+..+.++++|++|++++|......  .
T Consensus        20 ~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~--~   95 (306)
T 2z66_A           20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS--S   95 (306)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE--E
T ss_pred             ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh--h
Confidence            34555443  45666666655 3334433 46666677776663 11111111233445666666666665443221  1


Q ss_pred             cCCCcccCccEEEecc-cCCCCCh--hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           79 SLSSPPQYLQRLYLTG-NMKKLPD--WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      .+...+ +|++|++++ .++.++.  .+..+++|++|++++|.+.......+..+++|+.|+++
T Consensus        96 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           96 NFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             EEETCT-TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred             hcCCCC-CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence            223333 566666654 3443332  34455555555555555544333444455555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.60  E-value=1.8e-16  Score=139.84  Aligned_cols=197  Identities=17%  Similarity=0.147  Sum_probs=87.3

Q ss_pred             cCCcccccccccccccccc--ChHhHHH-HhcccccceeeeeeCCCChhHHHHHHhccC-CCCeEEEEecCCCccccccc
Q 042636            4 VHRGLGSLMDLQKLSIIEA--DSQVLKE-LMKLRQLRKLGIRPKNGNGKDVCALIANLE-NLESLTVLMASKDEILDLQS   79 (219)
Q Consensus         4 lP~~l~~l~~L~~L~~~~~--~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~   79 (219)
                      +|..++++++|++|++.++  .+.+|.+ ++++++|++|+++. +...+.++..+.++. +|++|++++|......+ ..
T Consensus       310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~-~~  387 (768)
T 3rgz_A          310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF-NEFSGELPESLTNLSASLLTLDLSSNNFSGPIL-PN  387 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS-SEEEECCCTTHHHHTTTCSEEECCSSEEEEECC-TT
T ss_pred             cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC-CccCccccHHHHhhhcCCcEEEccCCCcCCCcC-hh
Confidence            3444555555555555544  2234433 55556666665552 111112223333333 45555554443221111 11


Q ss_pred             CCC--cccCccEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCC----------
Q 042636           80 LSS--PPQYLQRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNY----------  144 (219)
Q Consensus        80 ~~~--~~~~L~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~----------  144 (219)
                      +..  .+ +|++|++++ .+. .+|.++..+++|+.|++++|.+.+..+..+..+++|+.|+++ +...+          
T Consensus       388 ~~~~~~~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  466 (768)
T 3rgz_A          388 LCQNPKN-TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK  466 (768)
T ss_dssp             TTCSTTC-CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             hhhcccC-CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence            111  12 455555554 332 244455555555555555555444333444444455555444 22111          


Q ss_pred             -------------ceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhh
Q 042636          145 -------------KLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHIL  203 (219)
Q Consensus       145 -------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~  203 (219)
                                   ..++.....+++|+.|++.++...+.++...+.+++|+.|++++|.....+|.++..+.
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  538 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR  538 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence                         11222223345566666655443323333334556666666666654445555554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.58  E-value=1.3e-15  Score=119.68  Aligned_cols=178  Identities=17%  Similarity=0.093  Sum_probs=103.6

Q ss_pred             cccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS   79 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   79 (219)
                      ..+|.++.  .++++|++.++  ....+..+.++++|++|+++.  +....+.. .+.+++|++|++++|......  ..
T Consensus        23 ~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~--~~   95 (290)
T 1p9a_G           23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--AELTKLQV-DGTLPVLGTLDLSHNQLQSLP--LL   95 (290)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT--SCCCEEEC-CSCCTTCCEEECCSSCCSSCC--CC
T ss_pred             CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC--CccCcccC-CCCCCcCCEEECCCCcCCcCc--hh
Confidence            44565553  46666766666  233344566777777777763  11111111 155677777777776554321  22


Q ss_pred             CCCcccCccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEE-ccCCCc
Q 042636           80 LSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHF-EAGWFP  155 (219)
Q Consensus        80 ~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~-~~~~~~  155 (219)
                      +...+ +|++|++++ .++.+| ..+..+++|+.|++++|.+...+...+..+++|+.|+++ +... . +.. ....++
T Consensus        96 ~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~-l~~~~~~~l~  172 (290)
T 1p9a_G           96 GQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-E-LPAGLLNGLE  172 (290)
T ss_dssp             TTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-C-CCTTTTTTCT
T ss_pred             hccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-c-cCHHHhcCcC
Confidence            33344 777777776 666655 446667777777777777776655666677777777776 3332 1 211 123466


Q ss_pred             ccceeeecccCCcceEEEcCCcccccceeeeecCC
Q 042636          156 KLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                      +|+.|++.++. +..++......++|+.+.+.+++
T Consensus       173 ~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          173 NLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence            77777777543 45444444445667777777654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.58  E-value=5.7e-17  Score=140.29  Aligned_cols=132  Identities=17%  Similarity=0.184  Sum_probs=64.0

Q ss_pred             cCCcccccccccccccccc--ChH-----------------hHHHHh--cccccceeeeeeCCCChhHHHHHHhccCCCC
Q 042636            4 VHRGLGSLMDLQKLSIIEA--DSQ-----------------VLKELM--KLRQLRKLGIRPKNGNGKDVCALIANLENLE   62 (219)
Q Consensus         4 lP~~l~~l~~L~~L~~~~~--~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~   62 (219)
                      +|.+++++++|++|++.++  .+.                 +|++++  ++++|++|+++. +...+.++..++++++|+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN-CPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC-CTTCSSCCTTTTTCSSCC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC-CcCCccChHHHhcCCCCC
Confidence            5555666666666665555  222                 555555  566666666652 222334444455555555


Q ss_pred             eEEEEecC-CCc-ccccccCCC------cccCccEEEecc-cCCCCCh--hhhcCCCccEEEEeeecCCCCCCccccCCC
Q 042636           63 SLTVLMAS-KDE-ILDLQSLSS------PPQYLQRLYLTG-NMKKLPD--WIFKLKNVIRLGLDLSGLTEDPLRVPHALP  131 (219)
Q Consensus        63 ~L~l~~~~-~~~-~~~~~~~~~------~~~~L~~L~l~~-~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  131 (219)
                      +|++++|. ... ..+ ..+..      .+ +|++|++++ .++.+|.  ++..+++|+.|++++|.+.+... .+..++
T Consensus       277 ~L~Ls~n~~l~~~~lp-~~~~~L~~~~~l~-~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~  353 (636)
T 4eco_A          277 LINVACNRGISGEQLK-DDWQALADAPVGE-KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI  353 (636)
T ss_dssp             EEECTTCTTSCHHHHH-HHHHHHHHSGGGG-TCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred             EEECcCCCCCccccch-HHHHhhhccccCC-CCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence            55555554 322 111 11111      12 555555554 4445555  45555555555555555542111 344444


Q ss_pred             ccceeeec
Q 042636          132 NLLELRLG  139 (219)
Q Consensus       132 ~L~~L~l~  139 (219)
                      +|+.|+++
T Consensus       354 ~L~~L~L~  361 (636)
T 4eco_A          354 KLASLNLA  361 (636)
T ss_dssp             EESEEECC
T ss_pred             CCCEEECC
Confidence            55555444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.58  E-value=2.5e-15  Score=119.00  Aligned_cols=168  Identities=17%  Similarity=0.227  Sum_probs=91.0

Q ss_pred             cccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636            7 GLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ   85 (219)
Q Consensus         7 ~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   85 (219)
                      ++..+++|++|++.++ ...++. ++++++|++|+++.  +....+ ..+.++++|++|++++|.....   +.+..++ 
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~--n~l~~~-~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~-  129 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG--NPLKNV-SAIAGLQSIKTLDLTSTQITDV---TPLAGLS-  129 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS--CCCSCC-GGGTTCTTCCEEECTTSCCCCC---GGGTTCT-
T ss_pred             hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccC--CcCCCc-hhhcCCCCCCEEECCCCCCCCc---hhhcCCC-
Confidence            3556666666666655 222222 56666666666663  111111 2355666666666666554332   2233444 


Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF  163 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~  163 (219)
                      +|++|++++ .++.++. +..+++|+.|++++|.+...+  .+..+++|+.|+++ +....  +. ....+++|+.|++.
T Consensus       130 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~  203 (308)
T 1h6u_A          130 NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD--IS-PLASLPNLIEVHLK  203 (308)
T ss_dssp             TCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC--CG-GGGGCTTCCEEECT
T ss_pred             CCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh--hhcCCCCCCEEECCCCccCc--Ch-hhcCCCCCCEEEcc
Confidence            666666665 5555543 556666777777666665532  25666777777766 32221  11 13345667777776


Q ss_pred             ccCCcceEEEcCCcccccceeeeecCC
Q 042636          164 DFVAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                      ++. +..+. +...+++|+.|++.+++
T Consensus       204 ~N~-l~~~~-~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          204 NNQ-ISDVS-PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             TSC-CCBCG-GGTTCTTCCEEEEEEEE
T ss_pred             CCc-cCccc-cccCCCCCCEEEccCCe
Confidence            543 33332 23456777777776653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.58  E-value=2.8e-16  Score=134.97  Aligned_cols=196  Identities=19%  Similarity=0.103  Sum_probs=96.5

Q ss_pred             ccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccc-cc
Q 042636            3 KVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILD-LQ   78 (219)
Q Consensus         3 ~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~   78 (219)
                      .+|++++++++|++|++.++  ....+..++++++|++|+++. +.....++ ..+.++++|++|++++|....... ..
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  370 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG-NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL  370 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS-CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred             CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC-CCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence            34444445555555554444  222233344455555555542 11111111 123455556666655554433221 12


Q ss_pred             cCCCcccCccEEEecc-cCCC-CChhhhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec-cccCCceEEEccCCC
Q 042636           79 SLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNYKLFHFEAGWF  154 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~  154 (219)
                      .+...+ +|++|++++ .+.. .|..+..+++|+.|++++|.+.... ...+..+++|+.|+++ +..... .......+
T Consensus       371 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l  448 (606)
T 3t6q_A          371 QLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGL  448 (606)
T ss_dssp             TTTTCT-TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT-CTTTTTTC
T ss_pred             hcccCC-CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc-CHHHHhCC
Confidence            233334 666666665 3433 3445556666777777666665432 2335667777777776 222211 12223456


Q ss_pred             cccceeeecccCCcceEEE---cCCcccccceeeeecCCCCCcchhHHhh
Q 042636          155 PKLQILTLFDFVAVKSVII---EKGAMPDIRELGIGPFPLWSMYIFLTDH  201 (219)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~---~~~~~p~L~~L~l~~~~~l~~~~~~~~~  201 (219)
                      ++|+.|++.++...+....   ..+.+++|+.|++.+|.-....|..+..
T Consensus       449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  498 (606)
T 3t6q_A          449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS  498 (606)
T ss_dssp             TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc
Confidence            7888888876553221111   1345788888888887533333444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.58  E-value=1.4e-15  Score=127.16  Aligned_cols=110  Identities=15%  Similarity=0.124  Sum_probs=49.2

Q ss_pred             CccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeec
Q 042636           86 YLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLF  163 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  163 (219)
                      +|++|++++ .+..+ +..+..+++|+.|++++|.+...+...+..+++|+.|+++.+............+++|+.|++.
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  208 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS  208 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence            444444444 33322 2233444555555555554444333344455555555554111111001112334566666666


Q ss_pred             ccCCcceEEEcCCcccccceeeeecCCCCCcch
Q 042636          164 DFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYI  196 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~  196 (219)
                      ++...+.++......++|+.|++.+| .+..+|
T Consensus       209 ~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~  240 (477)
T 2id5_A          209 HWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVP  240 (477)
T ss_dssp             CCTTCCEECTTTTTTCCCSEEEEESS-CCCSCC
T ss_pred             CCccccccCcccccCccccEEECcCC-cccccC
Confidence            55544444333333446666776665 344444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.57  E-value=2.9e-15  Score=128.68  Aligned_cols=75  Identities=12%  Similarity=0.033  Sum_probs=47.4

Q ss_pred             ccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhh
Q 042636          127 PHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHIL  203 (219)
Q Consensus       127 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~  203 (219)
                      +..+++|+.|+++.+......+...+.+++|+.|++.++. +..++...+.+|+|+.|++++|. +..+|.++..+.
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~  324 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFD  324 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHT
T ss_pred             hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCcccccCC
Confidence            4556677777776322222222334567888888888643 56666555668889999998874 556776665443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.57  E-value=2e-15  Score=117.49  Aligned_cols=178  Identities=21%  Similarity=0.221  Sum_probs=125.3

Q ss_pred             cccccccccccccccChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636            8 LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL   87 (219)
Q Consensus         8 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L   87 (219)
                      ...+.+|++|++.++.....+.++.+++|++|+++.  +....+ ..+.++++|++|++++|......+ ..+..++ +|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~--n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~-~L  111 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGG--NKLHDI-SALKELTNLTYLILTGNQLQSLPN-GVFDKLT-NL  111 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTT--SCCCCC-GGGTTCTTCCEEECTTSCCCCCCT-TTTTTCT-TC
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCC--CCCCCc-hhhcCCCCCCEEECCCCccCccCh-hHhcCCc-CC
Confidence            455677888887776322334578899999999984  222222 367889999999999886654322 3344555 99


Q ss_pred             cEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecc
Q 042636           88 QRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFD  164 (219)
Q Consensus        88 ~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~  164 (219)
                      ++|++++ .++.++.. +..+++|++|++++|.+...+...+..+++|+.|+++ +... .........+++|+.|++.+
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCC
Confidence            9999988 77776544 6788999999999999887766678889999999998 4333 21111235678999999987


Q ss_pred             cCCcceEEEc-CCcccccceeeeecCCCC
Q 042636          165 FVAVKSVIIE-KGAMPDIRELGIGPFPLW  192 (219)
Q Consensus       165 ~~~~~~~~~~-~~~~p~L~~L~l~~~~~l  192 (219)
                      +. +..+... .+.+++|+.|++.+++-.
T Consensus       191 N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          191 NQ-LKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             SC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             Cc-CCccCHHHHhCCcCCCEEEccCCCcc
Confidence            54 4444322 356899999999887543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.57  E-value=2.7e-15  Score=124.54  Aligned_cols=93  Identities=15%  Similarity=0.106  Sum_probs=42.7

Q ss_pred             hhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCcceE-EEcCCccccc
Q 042636          103 IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSV-IIEKGAMPDI  181 (219)
Q Consensus       103 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~p~L  181 (219)
                      +..+++|+.|++++|.+...+...+..+++|+.|+++.+............+++|+.|++.++. +..+ +...+.+++|
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L  373 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNL  373 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccChhhccccccc
Confidence            3344445555555554444333344455555555555222111111122345566666666543 3332 1123346666


Q ss_pred             ceeeeecCCCCCcchh
Q 042636          182 RELGIGPFPLWSMYIF  197 (219)
Q Consensus       182 ~~L~l~~~~~l~~~~~  197 (219)
                      +.|+++++ ++..+|.
T Consensus       374 ~~L~L~~N-~l~~~~~  388 (455)
T 3v47_A          374 KELALDTN-QLKSVPD  388 (455)
T ss_dssp             CEEECCSS-CCSCCCT
T ss_pred             cEEECCCC-ccccCCH
Confidence            77777664 3444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.56  E-value=1.4e-15  Score=126.39  Aligned_cols=180  Identities=18%  Similarity=0.109  Sum_probs=91.0

Q ss_pred             CCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCcccccccCC
Q 042636            5 HRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDLQSLS   81 (219)
Q Consensus         5 P~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~   81 (219)
                      |+.++++++|++|++.++  ....+..+.++++|++|+++.  +....+ ...+.++++|++|++++|....... ..+.
T Consensus        92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~  168 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD--NWLTVIPSGAFEYLSKLRELWLRNNPIESIPS-YAFN  168 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--SCCSBCCTTTSSSCTTCCEEECCSCCCCEECT-TTTT
T ss_pred             HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC--CcCCccChhhhcccCCCCEEECCCCCcceeCH-hHHh
Confidence            456788888888888776  333335577788888888874  222222 2235667777777777765543211 2233


Q ss_pred             CcccCccEEEec-------------------------c-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccce
Q 042636           82 SPPQYLQRLYLT-------------------------G-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLE  135 (219)
Q Consensus        82 ~~~~~L~~L~l~-------------------------~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  135 (219)
                      ..+ +|++|+++                         + .++.+| .+..+++|+.|++++|.+.......+..+++|+.
T Consensus       169 ~l~-~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  246 (452)
T 3zyi_A          169 RVP-SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK  246 (452)
T ss_dssp             TCT-TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred             cCC-cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCE
Confidence            333 55555554                         3 333333 2334445555555555554443444555555555


Q ss_pred             eeeccccCCceEEEccCCCcccceeeecccCCcceEEEc-CCcccccceeeeecCC
Q 042636          136 LRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFP  190 (219)
Q Consensus       136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~  190 (219)
                      |+++++............+++|+.|++.++. +..++.. ...+++|+.|++.+++
T Consensus       247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          247 LWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             EEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence            5554221111111112344566666665432 3332211 1235666666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.56  E-value=1.4e-15  Score=126.09  Aligned_cols=128  Identities=20%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             Ccccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccccccCCC
Q 042636            6 RGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILDLQSLSS   82 (219)
Q Consensus         6 ~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~   82 (219)
                      ..++++++|++|++.++  ....+..+.++++|++|+++.  +....+. ..+.++++|++|++++|......+ ..+..
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~  158 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD--NRLTTIPNGAFVYLSKLKELWLRNNPIESIPS-YAFNR  158 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS--SCCSSCCTTTSCSCSSCCEEECCSCCCCEECT-TTTTT
T ss_pred             HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC--CcCCeeCHhHhhccccCceeeCCCCcccccCH-HHhhh
Confidence            56788888888888877  333335577788888888874  2222222 235667777777777765433221 22333


Q ss_pred             cccCccEEEecc--cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           83 PPQYLQRLYLTG--NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        83 ~~~~L~~L~l~~--~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      .+ +|++|++++  .+..++. .+..+++|+.|++++|.+...  ..+..+++|+.|+++
T Consensus       159 l~-~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls  215 (440)
T 3zyj_A          159 IP-SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLS  215 (440)
T ss_dssp             CT-TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEECT
T ss_pred             Cc-ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccCEEECC
Confidence            33 555555543  2222222 234444455555544444332  123344444444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.56  E-value=3.5e-15  Score=124.71  Aligned_cols=103  Identities=17%  Similarity=0.078  Sum_probs=47.5

Q ss_pred             CccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeec
Q 042636           86 YLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLF  163 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  163 (219)
                      +|++|++++ .++.++. .+..+++|+.|++++|.+...+...+..+++|+.|+++.+.....+........+|+.|++.
T Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  232 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT  232 (477)
T ss_dssp             TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred             CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence            555555555 4444443 24455556666665555554434445555556655555222112122111222355555555


Q ss_pred             ccCCcceEEE-cCCcccccceeeeecC
Q 042636          164 DFVAVKSVII-EKGAMPDIRELGIGPF  189 (219)
Q Consensus       164 ~~~~~~~~~~-~~~~~p~L~~L~l~~~  189 (219)
                      ++. +..++. ..+.+++|+.|++.++
T Consensus       233 ~n~-l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          233 HCN-LTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             SSC-CCSCCHHHHTTCTTCCEEECCSS
T ss_pred             CCc-ccccCHHHhcCccccCeeECCCC
Confidence            432 332221 1233555555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.56  E-value=8.7e-16  Score=119.47  Aligned_cols=184  Identities=21%  Similarity=0.154  Sum_probs=132.5

Q ss_pred             Ccccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcc
Q 042636            6 RGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPP   84 (219)
Q Consensus         6 ~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   84 (219)
                      ++++.+++|++|++.++ ... ...++++++|++|+++. +...+.....+.++++|++|++++|......+ ..+..++
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~  133 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-GVFDKLT  133 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCT
T ss_pred             cccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCC-CccCccChhHhcCCcCCCEEECCCCcCCccCH-HHhccCC
Confidence            35888999999999888 222 34788999999999984 22222222346889999999999987654322 3345556


Q ss_pred             cCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceee
Q 042636           85 QYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILT  161 (219)
Q Consensus        85 ~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~  161 (219)
                       +|++|++++ .++.++.. +..+++|+.|++++|.+...+...+..+++|+.|+++ +...+. .......+++|+.|+
T Consensus       134 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          134 -NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIW  211 (272)
T ss_dssp             -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEE
T ss_pred             -CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEE
Confidence             999999998 77776654 5789999999999999988766778899999999998 444321 222235688999999


Q ss_pred             ecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhh
Q 042636          162 LFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDH  201 (219)
Q Consensus       162 l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~  201 (219)
                      +.+++.       .+.+|.|+.+.+..+.....+|.++..
T Consensus       212 l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          212 LHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             CCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             ccCCCc-------cccCcHHHHHHHHHHhCCCcccCcccc
Confidence            987653       234677888877766555555554443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.56  E-value=2.4e-15  Score=120.05  Aligned_cols=184  Identities=15%  Similarity=0.104  Sum_probs=86.9

Q ss_pred             cccCC-cccccccccccccccc--ChHhHHHHhcccccceeeeee-C-------------------CCChhHHHHHHhcc
Q 042636            2 AKVHR-GLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRP-K-------------------NGNGKDVCALIANL   58 (219)
Q Consensus         2 ~~lP~-~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~-~-------------------~~~~~~~~~~l~~l   58 (219)
                      ..+|. .++++++|++|++.++  ....+..++++++|++|+++. .                   +.........+.++
T Consensus        65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  144 (330)
T 1xku_A           65 TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL  144 (330)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTC
T ss_pred             CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCC
Confidence            34444 4677777777777766  223355666777777777764 0                   00111122345666


Q ss_pred             CCCCeEEEEecCCCcc-cccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636           59 ENLESLTVLMASKDEI-LDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL  136 (219)
Q Consensus        59 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  136 (219)
                      ++|++|++++|..... .....+...+ +|++|++++ .++.+|..+.  ++|+.|++++|.+...+...+..+++|+.|
T Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  221 (330)
T 1xku_A          145 NQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL  221 (330)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred             ccccEEECCCCcCCccCcChhhccCCC-CcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            6777777766654321 1122233333 566666655 4444443322  455555555555444333444555555555


Q ss_pred             eeccccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecC
Q 042636          137 RLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPF  189 (219)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~  189 (219)
                      +++.+............+++|+.|++.++. +..++.....+++|+.|++.++
T Consensus       222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          222 GLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             ECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS
T ss_pred             ECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC
Confidence            554211111000012234455555555432 3333222333455555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.55  E-value=2.7e-15  Score=122.34  Aligned_cols=88  Identities=13%  Similarity=0.164  Sum_probs=62.5

Q ss_pred             hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccc
Q 042636          101 DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPD  180 (219)
Q Consensus       101 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~  180 (219)
                      .++..+++|+.|++++|.+.......+..+++|+.|+++.+.. ..+......+++|+.|++.++. +..++...+.+++
T Consensus       242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~  319 (390)
T 3o6n_A          242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR  319 (390)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTT
T ss_pred             HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cccCcccCCCCCCCEEECCCCc-ceecCccccccCc
Confidence            3566788899999999888776667788999999999983322 2244444568899999998754 4444333345677


Q ss_pred             cceeeeecCC
Q 042636          181 IRELGIGPFP  190 (219)
Q Consensus       181 L~~L~l~~~~  190 (219)
                      |+.|++.+++
T Consensus       320 L~~L~L~~N~  329 (390)
T 3o6n_A          320 LENLYLDHNS  329 (390)
T ss_dssp             CSEEECCSSC
T ss_pred             CCEEECCCCc
Confidence            8888877764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.55  E-value=1.5e-15  Score=118.18  Aligned_cols=35  Identities=20%  Similarity=0.152  Sum_probs=22.2

Q ss_pred             cccceeeecccCCcceEEEc-CCcccccceeeeecCC
Q 042636          155 PKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFP  190 (219)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~  190 (219)
                      .+|+.|++.++. ++.++.. .+.+++|+.|++.+++
T Consensus       200 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          200 IRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             CcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence            367788887644 4444322 2457888888888544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=1.2e-15  Score=135.49  Aligned_cols=132  Identities=17%  Similarity=0.212  Sum_probs=65.8

Q ss_pred             cCCcccccccccccccccc--Ch-----------------HhHHHHh--cccccceeeeeeCCCChhHHHHHHhccCCCC
Q 042636            4 VHRGLGSLMDLQKLSIIEA--DS-----------------QVLKELM--KLRQLRKLGIRPKNGNGKDVCALIANLENLE   62 (219)
Q Consensus         4 lP~~l~~l~~L~~L~~~~~--~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~   62 (219)
                      +|.+++++++|++|++.++  .+                 .+|.+++  ++++|+.|+++. +...+.++..++++++|+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~-N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN-CPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES-CTTCCSCCGGGGGCSSCC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC-CCCCccChHHHhCCCCCC
Confidence            5556666666666666555  22                 2555554  666666666652 223334444555555566


Q ss_pred             eEEEEecC-CCc-ccc--cc----cCCCcccCccEEEecc-cCCCCCh--hhhcCCCccEEEEeeecCCCCCCccccCCC
Q 042636           63 SLTVLMAS-KDE-ILD--LQ----SLSSPPQYLQRLYLTG-NMKKLPD--WIFKLKNVIRLGLDLSGLTEDPLRVPHALP  131 (219)
Q Consensus        63 ~L~l~~~~-~~~-~~~--~~----~~~~~~~~L~~L~l~~-~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  131 (219)
                      .|++++|. ... ..+  +.    .+...+ +|+.|++++ .++.+|.  ++..+++|+.|++++|.+...+  .++.++
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~-~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~  595 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGP-KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNV  595 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTT-TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTS
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccC-CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCC
Confidence            66655554 322 111  11    122222 555555554 4445555  4555555555555555554221  445555


Q ss_pred             ccceeeec
Q 042636          132 NLLELRLG  139 (219)
Q Consensus       132 ~L~~L~l~  139 (219)
                      +|+.|+++
T Consensus       596 ~L~~L~Ls  603 (876)
T 4ecn_A          596 KLTDLKLD  603 (876)
T ss_dssp             EESEEECC
T ss_pred             cceEEECc
Confidence            55555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.55  E-value=3.3e-15  Score=128.28  Aligned_cols=195  Identities=19%  Similarity=0.141  Sum_probs=117.6

Q ss_pred             CCcccccccccccccccc--ChHhHH-HHhcccccceeeeeeCCCChhH--HHHHHhccCCCCeEEEEecCCCccccccc
Q 042636            5 HRGLGSLMDLQKLSIIEA--DSQVLK-ELMKLRQLRKLGIRPKNGNGKD--VCALIANLENLESLTVLMASKDEILDLQS   79 (219)
Q Consensus         5 P~~l~~l~~L~~L~~~~~--~~~~~~-~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   79 (219)
                      |..++++++|++|++.++  ...++. .++++++|++|+++. +.....  .+..+.++++|++|++++|...... ...
T Consensus       318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~  395 (606)
T 3t6q_A          318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEA  395 (606)
T ss_dssp             GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC-TTT
T ss_pred             hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCCcCCcCC-HHH
Confidence            446777778888877766  223333 367778888888774 111111  1345677778888888776553332 234


Q ss_pred             CCCcccCccEEEecc-cCCCC--ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEE--EccCC
Q 042636           80 LSSPPQYLQRLYLTG-NMKKL--PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFH--FEAGW  153 (219)
Q Consensus        80 ~~~~~~~L~~L~l~~-~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~--~~~~~  153 (219)
                      +...+ +|++|++++ .+...  +.++..+++|+.|++++|.+...+...+..+++|+.|+++ +...+..+.  .....
T Consensus       396 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  474 (606)
T 3t6q_A          396 FKECP-QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT  474 (606)
T ss_dssp             TTTCT-TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred             hcCCc-cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence            44455 788888876 44432  2336677788888888877766656667778888888887 433332221  12345


Q ss_pred             CcccceeeecccCCcceEE-EcCCcccccceeeeecCCCCCcchhHHhhhh
Q 042636          154 FPKLQILTLFDFVAVKSVI-IEKGAMPDIRELGIGPFPLWSMYIFLTDHIL  203 (219)
Q Consensus       154 ~~~L~~L~l~~~~~~~~~~-~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~  203 (219)
                      +++|+.|++.++. +..+. ...+.+++|+.|+++++.-....|.++..+.
T Consensus       475 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  524 (606)
T 3t6q_A          475 LGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK  524 (606)
T ss_dssp             CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred             CCCccEEECCCCc-cCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence            6778888887654 33332 2334577788888887754444454554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.54  E-value=2.5e-15  Score=121.04  Aligned_cols=134  Identities=18%  Similarity=0.167  Sum_probs=65.3

Q ss_pred             ccCC-cccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccccc
Q 042636            3 KVHR-GLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         3 ~lP~-~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      .+|. .++++++|++|++.++  ....+..++++++|++|+++.  +....+. ..+.++++|++|++++|.........
T Consensus        66 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~  143 (353)
T 2z80_A           66 YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY--NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS  143 (353)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS--SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSC
T ss_pred             ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC--CcCCcCCHhHhCCCccCCEEECCCCCCcccCchh
Confidence            3444 4666666777666655  222233456666666666663  1111222 22455666666666655443221112


Q ss_pred             cCCCcccCccEEEecc--cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           79 SLSSPPQYLQRLYLTG--NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~--~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      .+...+ +|++|++++  .++.+ +..+..+++|+.|++++|.+.......+..+++|++|+++
T Consensus       144 ~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          144 LFSHLT-KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             SCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             hhccCC-CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            233333 566666654  13332 2344455555666665555544333344444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=4e-15  Score=127.85  Aligned_cols=87  Identities=13%  Similarity=0.179  Sum_probs=61.8

Q ss_pred             hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCccc
Q 042636          101 DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMP  179 (219)
Q Consensus       101 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p  179 (219)
                      .++..+++|+.|++++|.+.+..+..+..+++|+.|+++ +...  .+......+++|+.|++.++. +..++...+.++
T Consensus       248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~  324 (597)
T 3oja_B          248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFD  324 (597)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC--EEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHT
T ss_pred             hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC--CCCcccccCCCCcEEECCCCC-CCccCcccccCC
Confidence            456778889999999998887666788899999999998 4332  244445568889999988754 444433334467


Q ss_pred             ccceeeeecCC
Q 042636          180 DIRELGIGPFP  190 (219)
Q Consensus       180 ~L~~L~l~~~~  190 (219)
                      +|+.|++.+|.
T Consensus       325 ~L~~L~L~~N~  335 (597)
T 3oja_B          325 RLENLYLDHNS  335 (597)
T ss_dssp             TCSEEECCSSC
T ss_pred             CCCEEECCCCC
Confidence            77777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.53  E-value=1.3e-14  Score=110.56  Aligned_cols=187  Identities=17%  Similarity=0.114  Sum_probs=131.5

Q ss_pred             cccCCcccccccccccccccc-ChHhHH-HHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEe-cCCCccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLK-ELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLM-ASKDEILDL   77 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~-~~~~~~~~~   77 (219)
                      +.+|. +.  .++++|++.++ ...++. .++++++|++|+++. +.....+. ..+.++++|++|++++ |..... +.
T Consensus        24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~-n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~   98 (239)
T 2xwt_C           24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI-DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DP   98 (239)
T ss_dssp             SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEEC-CSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CT
T ss_pred             cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCC-CCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CH
Confidence            45777 44  38899998887 444443 588899999999993 22133332 3568899999999998 665443 22


Q ss_pred             ccCCCcccCccEEEecc-cCCCCChhhhcCCCcc---EEEEeee-cCCCCCCccccCCCccc-eeeec-cccCCceEEEc
Q 042636           78 QSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVI---RLGLDLS-GLTEDPLRVPHALPNLL-ELRLG-GTYNYKLFHFE  150 (219)
Q Consensus        78 ~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~-~~~~~~~~~~~  150 (219)
                      ..+...+ +|++|++++ .++.+|. +..+.+|+   .|++++| .+...+...+..+++|+ .|+++ +...  .+...
T Consensus        99 ~~f~~l~-~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~  174 (239)
T 2xwt_C           99 DALKELP-LLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGY  174 (239)
T ss_dssp             TSEECCT-TCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTT
T ss_pred             HHhCCCC-CCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHh
Confidence            3444555 999999998 7888886 66777777   9999999 88776666788999999 99997 4332  23322


Q ss_pred             cCCCcccceeeecccCCcceEEEc-CCcc-cccceeeeecCCCCCcchhH
Q 042636          151 AGWFPKLQILTLFDFVAVKSVIIE-KGAM-PDIRELGIGPFPLWSMYIFL  198 (219)
Q Consensus       151 ~~~~~~L~~L~l~~~~~~~~~~~~-~~~~-p~L~~L~l~~~~~l~~~~~~  198 (219)
                      ....++|+.|++.++..++.++.. .+.+ ++|+.|++.++ .+..+|.+
T Consensus       175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~  223 (239)
T 2xwt_C          175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK  223 (239)
T ss_dssp             TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT
T ss_pred             hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh
Confidence            222368999999976546655432 2456 89999999985 45666653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.53  E-value=2.3e-15  Score=130.26  Aligned_cols=132  Identities=16%  Similarity=0.102  Sum_probs=80.2

Q ss_pred             cCCccc--ccccccccccccc--ChHhHHHHhcccccceeeeeeCCC-Chh-HHHHHHhcc------CCCCeEEEEecCC
Q 042636            4 VHRGLG--SLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNG-NGK-DVCALIANL------ENLESLTVLMASK   71 (219)
Q Consensus         4 lP~~l~--~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~   71 (219)
                      +|++++  ++++|++|++.++  .+.+|..++++++|++|+++. +. ..+ .++..++++      ++|++|++++|..
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC-NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT-CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC-CCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence            788877  8888888888776  566777788888888888873 33 344 566666665      7777777777665


Q ss_pred             CcccccccCCCcccCccEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCCc-cceeeec
Q 042636           72 DEILDLQSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPN-LLELRLG  139 (219)
Q Consensus        72 ~~~~~~~~~~~~~~~L~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~  139 (219)
                      ........+..++ +|++|++++ .++ .+| .+..+++|+.|++++|.+... +..+..+++ |+.|+++
T Consensus       318 ~~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~~L~~L~Ls  385 (636)
T 4eco_A          318 KTFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI-PANFCGFTEQVENLSFA  385 (636)
T ss_dssp             SSCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEEC-CTTSEEECTTCCEEECC
T ss_pred             CccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccc-cHhhhhhcccCcEEEcc
Confidence            4221101344444 666666665 454 455 455555555555555555422 223444555 5555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.52  E-value=4.3e-15  Score=115.66  Aligned_cols=189  Identities=15%  Similarity=0.053  Sum_probs=129.9

Q ss_pred             cccCCcccccccccccccccc-ChHh-HHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQV-LKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS   79 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   79 (219)
                      ..+|.++.  .++++|++.++ ...+ +..++++++|++|+++. +.........+.++++|++|++++|...... ...
T Consensus        20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~   95 (276)
T 2z62_A           20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGA   95 (276)
T ss_dssp             SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTT
T ss_pred             cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCC-CcCCccCHHHccCCcCCCEEECCCCccCccC-hhh
Confidence            45787765  47899999887 3333 34688999999999984 2222222335788999999999998765443 244


Q ss_pred             CCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCCCCC-CccccCCCccceeeeccccCCceEE-EccCCCc
Q 042636           80 LSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLGGTYNYKLFH-FEAGWFP  155 (219)
Q Consensus        80 ~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~  155 (219)
                      +..++ +|++|++++ .+..++. .+..+++|++|++++|.+.... ...+..+++|+.|+++.+.... +. .....++
T Consensus        96 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~  173 (276)
T 2z62_A           96 FSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLH  173 (276)
T ss_dssp             TTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHH
T ss_pred             hcCCc-cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhh
Confidence            55566 999999987 6766654 5778999999999999987743 5678899999999998332221 11 1122234


Q ss_pred             ccc----eeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhH
Q 042636          156 KLQ----ILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFL  198 (219)
Q Consensus       156 ~L~----~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~  198 (219)
                      .|+    .|++.++. +..+.......++|+.|+++++. +..+|.+
T Consensus       174 ~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~  218 (276)
T 2z62_A          174 QMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ-LKSVPDG  218 (276)
T ss_dssp             TCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSC-CSCCCTT
T ss_pred             hccccceeeecCCCc-ccccCccccCCCcccEEECCCCc-eeecCHh
Confidence            555    67777543 55554433445689999999875 6666553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.52  E-value=4.9e-15  Score=116.37  Aligned_cols=185  Identities=17%  Similarity=0.050  Sum_probs=136.3

Q ss_pred             ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636            8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY   86 (219)
Q Consensus         8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   86 (219)
                      ++++++++++++.++ ...+|..+  .++++.|+++. +......+..+.++++|++|++++|.......   ....+ +
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~-~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLP-V   78 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCT-T
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCC-c
Confidence            677888999988766 45555544  36899999984 32223334567899999999999987655432   24455 9


Q ss_pred             ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecc
Q 042636           87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFD  164 (219)
Q Consensus        87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~  164 (219)
                      |++|++++ .++.+|..+..+++|+.|++++|++...+...+..+++|+.|+++ +.... ........+++|+.|++.+
T Consensus        79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCC
Confidence            99999998 888899888899999999999999998777788999999999998 44432 1111234578999999997


Q ss_pred             cCCcceEEEcC-CcccccceeeeecCCCCCcchhHHhhh
Q 042636          165 FVAVKSVIIEK-GAMPDIRELGIGPFPLWSMYIFLTDHI  202 (219)
Q Consensus       165 ~~~~~~~~~~~-~~~p~L~~L~l~~~~~l~~~~~~~~~l  202 (219)
                      +. ++.++... ..+++|+.|++.++ .+..+|.++...
T Consensus       158 N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~  194 (290)
T 1p9a_G          158 NN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGS  194 (290)
T ss_dssp             SC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             Cc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhccc
Confidence            54 55554332 45799999999986 466777665443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.52  E-value=1.5e-15  Score=121.27  Aligned_cols=184  Identities=18%  Similarity=0.146  Sum_probs=126.1

Q ss_pred             cCCcccccccccccccccc--ChH-hHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecC-CCccccccc
Q 042636            4 VHRGLGSLMDLQKLSIIEA--DSQ-VLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMAS-KDEILDLQS   79 (219)
Q Consensus         4 lP~~l~~l~~L~~L~~~~~--~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~   79 (219)
                      .+..+.++++|++|++.++  ... ++..++++++|++|+++. +......+..++++++|++|++++|. .....-...
T Consensus        85 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~  163 (336)
T 2ast_B           85 PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG-LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL  163 (336)
T ss_dssp             CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT-CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC-cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence            3445677899999999887  444 777889999999999983 44555777888999999999999873 332111122


Q ss_pred             CCCcccCccEEEecc--cCCC--CChhhhcCC-CccEEEEeeec--CCCCC-CccccCCCccceeeecccc-CCceEEEc
Q 042636           80 LSSPPQYLQRLYLTG--NMKK--LPDWIFKLK-NVIRLGLDLSG--LTEDP-LRVPHALPNLLELRLGGTY-NYKLFHFE  150 (219)
Q Consensus        80 ~~~~~~~L~~L~l~~--~~~~--l~~~~~~l~-~L~~L~l~~~~--~~~~~-~~~l~~l~~L~~L~l~~~~-~~~~~~~~  150 (219)
                      +...+ +|++|++++  .++.  ++..+..++ +|++|++++|.  +.... ...+..+++|+.|+++.+. ..+.....
T Consensus       164 ~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  242 (336)
T 2ast_B          164 LSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  242 (336)
T ss_dssp             HHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             HhcCC-CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence            33344 899999986  3443  456677888 99999999884  44221 2345678999999998333 22212223


Q ss_pred             cCCCcccceeeecccCCcceEEE-cCCcccccceeeeecC
Q 042636          151 AGWFPKLQILTLFDFVAVKSVII-EKGAMPDIRELGIGPF  189 (219)
Q Consensus       151 ~~~~~~L~~L~l~~~~~~~~~~~-~~~~~p~L~~L~l~~~  189 (219)
                      ...+++|+.|++.++.......+ ..+.+|+|+.|++.+|
T Consensus       243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            44678999999988753322111 2345899999999988

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.52  E-value=8.5e-15  Score=121.72  Aligned_cols=133  Identities=20%  Similarity=0.221  Sum_probs=88.9

Q ss_pred             cccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS   79 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   79 (219)
                      ..+|.++.  .++++|++.++  ....+..++++++|++|+++. +.........+.++++|++|++++|...... ...
T Consensus        67 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~  142 (452)
T 3zyi_A           67 SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGA  142 (452)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTT
T ss_pred             CccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCC-CccCCcChhhccCcccCCEEECCCCcCCccC-hhh
Confidence            46777665  58899999887  344456789999999999994 2222223356788999999999998765432 234


Q ss_pred             CCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeec
Q 042636           80 LSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        80 ~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      +...+ +|++|++++ .++.+|. .+..+++|+.|++++|. +...+...+..+++|+.|+++
T Consensus       143 ~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~  204 (452)
T 3zyi_A          143 FEYLS-KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG  204 (452)
T ss_dssp             SSSCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred             hcccC-CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence            55566 999999997 6666553 45566677777776532 322233345556666666655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.52  E-value=1.7e-15  Score=122.05  Aligned_cols=184  Identities=15%  Similarity=0.086  Sum_probs=127.1

Q ss_pred             CcccCCcccccccccccccccc-ChHhHH-HHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA-DSQVLK-ELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~-~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      ++.+|.++.  .+|++|++.++ ...++. .++++++|++|+++. +......+..+.++++|++|++++|......+ .
T Consensus        43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~  118 (353)
T 2z80_A           43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-S  118 (353)
T ss_dssp             CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-H
T ss_pred             ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCC-CccCccCHhhcCCCCCCCEEECCCCcCCcCCH-h
Confidence            356787765  48999999887 334443 688999999999984 22222223457889999999999987654322 2


Q ss_pred             cCCCcccCccEEEecc-cCCCCCh--hhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeeccccCCceEEEccCCC
Q 042636           79 SLSSPPQYLQRLYLTG-NMKKLPD--WIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWF  154 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~l~~--~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  154 (219)
                      .+...+ +|++|++++ .++.+|.  .+..+++|++|++++|. +...+...+..+++|+.|+++.+............+
T Consensus       119 ~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  197 (353)
T 2z80_A          119 WFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI  197 (353)
T ss_dssp             HHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             HhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence            244555 999999998 7778776  67889999999999984 555555678889999999998332222112234557


Q ss_pred             cccceeeecccCCcceEEEc-CCcccccceeeeecCC
Q 042636          155 PKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFP  190 (219)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~  190 (219)
                      ++|++|++.++. ++.++.. .+.+++|+.|++.++.
T Consensus       198 ~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          198 QNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             SEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred             ccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc
Confidence            788888888654 3332211 1236788888888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.52  E-value=2.2e-14  Score=119.03  Aligned_cols=135  Identities=18%  Similarity=0.107  Sum_probs=96.0

Q ss_pred             CCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636           59 ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL  136 (219)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  136 (219)
                      ++|+.|++++|......+ ..+...+ +|++|++++ .++.+ |.++..+++|+.|++++|.+...+...++.+++|+.|
T Consensus       275 ~~L~~L~l~~n~l~~~~~-~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLK-SVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             SCCCEEECCSSCCCEECT-TTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred             cCceEEEecCccccccch-hhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence            356666666655443322 3344555 999999988 67664 5678889999999999999987666788999999999


Q ss_pred             eeccccCCceEEEccCCCcccceeeecccCCcceEEEc-CCcccccceeeeecCCCCCcch
Q 042636          137 RLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFPLWSMYI  196 (219)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~l~~~~  196 (219)
                      +++.+............+++|++|++.++. +..++.. .+.+++|+.|++.+++-....|
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            998333222122334568999999999754 5554432 2568999999999987544444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.51  E-value=4.5e-15  Score=127.42  Aligned_cols=99  Identities=12%  Similarity=-0.005  Sum_probs=44.6

Q ss_pred             hhhhcCCCccEEEEeeecCCCC-CCccccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCcceE-EEcCCcc
Q 042636          101 DWIFKLKNVIRLGLDLSGLTED-PLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSV-IIEKGAM  178 (219)
Q Consensus       101 ~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~  178 (219)
                      ..+..+++|+.|++++|.+.+. ....++.+++|+.|+++.+............+++|+.|++.++. +..+ +...+.+
T Consensus       442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l  520 (606)
T 3vq2_A          442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQL  520 (606)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTC
T ss_pred             hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCcCHHHccCC
Confidence            3344444555555544444331 22334455555555554221111111112345566666666543 3322 2223445


Q ss_pred             cccceeeeecCCCCCcchhHHhh
Q 042636          179 PDIRELGIGPFPLWSMYIFLTDH  201 (219)
Q Consensus       179 p~L~~L~l~~~~~l~~~~~~~~~  201 (219)
                      ++|+.|++++|. +..+|.++..
T Consensus       521 ~~L~~L~l~~N~-l~~~p~~~~~  542 (606)
T 3vq2_A          521 YSLSTLDCSFNR-IETSKGILQH  542 (606)
T ss_dssp             TTCCEEECTTSC-CCCEESCGGG
T ss_pred             CcCCEEECCCCc-CcccCHhHhh
Confidence            666666666653 4555555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.51  E-value=2e-15  Score=129.61  Aligned_cols=134  Identities=16%  Similarity=0.079  Sum_probs=73.9

Q ss_pred             HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC--CChhhhcCCCccEEEEeeecCCCCCCccccCCC
Q 042636           55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK--LPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALP  131 (219)
Q Consensus        55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  131 (219)
                      +.++++|++|++++|......+ ..+...+ +|++|++++ .+..  +|.++..+++|+.|++++|.+...+...+..++
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  497 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFD-GIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH  497 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCT-TTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhccccCCEEECcCCCCCccch-hhhcCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence            3444555555555544322211 2233334 666666665 4433  455566677777777777776665555666777


Q ss_pred             ccceeeeccccCCceEEEccCCCcccceeeecccCCcceEEEcCCccc-ccceeeeecCCC
Q 042636          132 NLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMP-DIRELGIGPFPL  191 (219)
Q Consensus       132 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p-~L~~L~l~~~~~  191 (219)
                      +|+.|+++.+......+.....+++|+.|++.++. +..++.....+| +|+.|++.+++-
T Consensus       498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc
Confidence            77777776322222222334456677777777544 555554444555 477777776553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.51  E-value=5.6e-15  Score=117.09  Aligned_cols=173  Identities=19%  Similarity=0.138  Sum_probs=78.2

Q ss_pred             ccccccccccccc--ChHhHHHH--hcccccceeeeeeCCCChhHHHHHHhcc-----CCCCeEEEEecCCCcccccccC
Q 042636           10 SLMDLQKLSIIEA--DSQVLKEL--MKLRQLRKLGIRPKNGNGKDVCALIANL-----ENLESLTVLMASKDEILDLQSL   80 (219)
Q Consensus        10 ~l~~L~~L~~~~~--~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~   80 (219)
                      ++++|++|++.++  .+..|..+  +.+++|++|+++.  +.....+..++++     ++|++|++++|...... ...+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-~~~~  169 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN--VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS-CEQV  169 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES--CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC-TTTC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC--CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccch-HHHh
Confidence            4566666666655  23344443  5566666666663  1111112222332     56666666665543322 1233


Q ss_pred             CCcccCccEEEecc-cCCC---CChhh--hcCCCccEEEEeeecCCCCC---CccccCCCccceeeec-cccCCceEEEc
Q 042636           81 SSPPQYLQRLYLTG-NMKK---LPDWI--FKLKNVIRLGLDLSGLTEDP---LRVPHALPNLLELRLG-GTYNYKLFHFE  150 (219)
Q Consensus        81 ~~~~~~L~~L~l~~-~~~~---l~~~~--~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~-~~~~~~~~~~~  150 (219)
                      ..++ +|++|++++ .+..   ++..+  ..+++|++|++++|.+...+   ...+..+++|+.|+++ +...+......
T Consensus       170 ~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          170 RVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             CCCS-SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             ccCC-CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence            3444 666666655 2221   12222  45556666666666554311   1222345566666665 33322110011


Q ss_pred             cCCCcccceeeecccCCcceEEEcCCcccccceeeeecC
Q 042636          151 AGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPF  189 (219)
Q Consensus       151 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~  189 (219)
                      ...+++|+.|++.++. ++.++..  ..++|+.|+++++
T Consensus       249 ~~~l~~L~~L~Ls~N~-l~~ip~~--~~~~L~~L~Ls~N  284 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTG-LKQVPKG--LPAKLSVLDLSYN  284 (312)
T ss_dssp             CCCCTTCCEEECTTSC-CSSCCSS--CCSEEEEEECCSS
T ss_pred             hhhcCCCCEEECCCCc-cChhhhh--ccCCceEEECCCC
Confidence            1224556666665433 3332211  1245566666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.51  E-value=6.6e-15  Score=117.45  Aligned_cols=190  Identities=18%  Similarity=0.109  Sum_probs=115.2

Q ss_pred             cccCCcccccccccccccccc-ChHhH-HHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS   79 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   79 (219)
                      ..+|..+.  .++++|++.++ ...++ ..++++++|++|+++. +......+..++++++|++|++++|.......  .
T Consensus        44 ~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~--~  118 (330)
T 1xku_A           44 EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKNQLKELPE--K  118 (330)
T ss_dssp             CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS--S
T ss_pred             cccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEEECCCCcCCccCh--h
Confidence            45777664  57889998887 33333 4688999999999994 22222235567889999999999987653311  1


Q ss_pred             CCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCCC--CCCccccCCCccceeeec-cccCC----------
Q 042636           80 LSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLTE--DPLRVPHALPNLLELRLG-GTYNY----------  144 (219)
Q Consensus        80 ~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~-~~~~~----------  144 (219)
                      +.  + +|++|++++ .++.++. .+..+++|+.|++++|.+..  .....+..+++|+.|+++ +....          
T Consensus       119 ~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~  195 (330)
T 1xku_A          119 MP--K-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT  195 (330)
T ss_dssp             CC--T-TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCS
T ss_pred             hc--c-cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCC
Confidence            11  3 788888877 6666543 35677778888887777653  223455666777766665 22211          


Q ss_pred             ---------ceE-EEccCCCcccceeeecccCCcceEEE-cCCcccccceeeeecCCCCCcchhHHhh
Q 042636          145 ---------KLF-HFEAGWFPKLQILTLFDFVAVKSVII-EKGAMPDIRELGIGPFPLWSMYIFLTDH  201 (219)
Q Consensus       145 ---------~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~l~~~~~~~~~  201 (219)
                               ..+ ......+++|+.|++.++. +..+.. ..+.+++|+.|++.++ .+..+|.++..
T Consensus       196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~  261 (330)
T 1xku_A          196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLAD  261 (330)
T ss_dssp             EEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTT
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCChhhcc
Confidence                     000 1112345566666666543 333321 1234677777777776 34556655443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.50  E-value=1.8e-14  Score=110.72  Aligned_cols=83  Identities=24%  Similarity=0.216  Sum_probs=36.8

Q ss_pred             HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCc
Q 042636           55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPN  132 (219)
Q Consensus        55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  132 (219)
                      +.++++|++|++++|......+ ..+..++ +|++|++++ .++.+| ..+..+++|++|++++|.+...+...+..+++
T Consensus        55 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  132 (251)
T 3m19_A           55 FRGLTKLTWLNLDYNQLQTLSA-GVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK  132 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCT-TTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hcCcccCCEEECCCCcCCccCH-hHhccCC-cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence            3444555555555443332211 1222333 555555544 444433 22344455555555555554443334444555


Q ss_pred             cceeeec
Q 042636          133 LLELRLG  139 (219)
Q Consensus       133 L~~L~l~  139 (219)
                      |+.|+++
T Consensus       133 L~~L~Ls  139 (251)
T 3m19_A          133 LKELRLN  139 (251)
T ss_dssp             CCEEECC
T ss_pred             ccEEECc
Confidence            5555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.50  E-value=1.6e-14  Score=119.72  Aligned_cols=157  Identities=20%  Similarity=0.183  Sum_probs=109.7

Q ss_pred             CcccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      +..+|.++.  .+++.|++.++  ....+..++++++|++|+++. +....-....+.++++|++|++++|...... ..
T Consensus        55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~  130 (440)
T 3zyj_A           55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NG  130 (440)
T ss_dssp             CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS-SCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TT
T ss_pred             cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC-CcCCccChhhccCCccCCEEECCCCcCCeeC-Hh
Confidence            356788775  57888988877  333346688999999999994 2222222356788999999999998765432 23


Q ss_pred             cCCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeec-cccCCceEEEccCCC
Q 042636           79 SLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWF  154 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~  154 (219)
                      .+...+ +|++|++++ .++.++. .+..+++|+.|++++|. +...+...+..+++|+.|+++ +....  ++ ....+
T Consensus       131 ~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l  206 (440)
T 3zyj_A          131 AFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPL  206 (440)
T ss_dssp             TSCSCS-SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTC
T ss_pred             Hhhccc-cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCC
Confidence            455556 999999998 7777654 56789999999999854 444445578899999999998 43321  22 13345


Q ss_pred             cccceeeeccc
Q 042636          155 PKLQILTLFDF  165 (219)
Q Consensus       155 ~~L~~L~l~~~  165 (219)
                      ++|+.|++.++
T Consensus       207 ~~L~~L~Ls~N  217 (440)
T 3zyj_A          207 IKLDELDLSGN  217 (440)
T ss_dssp             SSCCEEECTTS
T ss_pred             cccCEEECCCC
Confidence            56666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.49  E-value=1.4e-14  Score=114.75  Aligned_cols=179  Identities=16%  Similarity=0.090  Sum_probs=91.0

Q ss_pred             cCCcc--cccccccccccccc--ChH---h-HHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccc
Q 042636            4 VHRGL--GSLMDLQKLSIIEA--DSQ---V-LKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEIL   75 (219)
Q Consensus         4 lP~~l--~~l~~L~~L~~~~~--~~~---~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~   75 (219)
                      .|..+  +++++|++|++.++  ...   . ...+..+++|++|+++. +......+..++++++|++|++++|......
T Consensus       107 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  185 (310)
T 4glp_A          107 MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQ-AHSPAFSCEQVRAFPALTSLDLSDNPGLGER  185 (310)
T ss_dssp             CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEEC-CSSCCCCTTSCCCCTTCCEEECCSCTTCHHH
T ss_pred             hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeC-CCcchhhHHHhccCCCCCEEECCCCCCccch
Confidence            34444  56666666666655  111   1 12344566666666663 2222222234456666677776666543211


Q ss_pred             --c-cccCCCcccCccEEEecc-cCCCCChh----hhcCCCccEEEEeeecCCCCCCccccC---CCccceeeec-cccC
Q 042636           76 --D-LQSLSSPPQYLQRLYLTG-NMKKLPDW----IFKLKNVIRLGLDLSGLTEDPLRVPHA---LPNLLELRLG-GTYN  143 (219)
Q Consensus        76 --~-~~~~~~~~~~L~~L~l~~-~~~~l~~~----~~~l~~L~~L~l~~~~~~~~~~~~l~~---l~~L~~L~l~-~~~~  143 (219)
                        . .......+ +|++|++++ .++.++..    +..+++|++|++++|.+....+..+..   +++|++|+++ +...
T Consensus       186 ~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          186 GLMAALCPHKFP-AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             HHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             hhhHHHhhhcCC-CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence              1 11112333 666666665 45443321    345567777777777666542222333   3577777776 3332


Q ss_pred             CceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCC
Q 042636          144 YKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       144 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                        .+  +...+++|+.|++.++. +..++. ...+|+|+.|++.+++
T Consensus       265 --~l--p~~~~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          265 --QV--PKGLPAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             --SC--CSCCCSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred             --ch--hhhhcCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence              12  12223667777776543 444332 3456777777776654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.49  E-value=3.1e-15  Score=126.93  Aligned_cols=180  Identities=14%  Similarity=0.110  Sum_probs=72.0

Q ss_pred             ccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636            8 LGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ   85 (219)
Q Consensus         8 l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   85 (219)
                      ++++++|++|++.++  ....+..++++++|++|+++. +...+..+..++++++|++|++++|..........+...+ 
T Consensus        46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-  123 (549)
T 2z81_A           46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-  123 (549)
T ss_dssp             TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-
T ss_pred             hhcCCcccEEECCCCCcCccChhhccccccCCEEECCC-CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-
Confidence            444444444444443  111223344444444444442 1111112222444444555544444332211112222233 


Q ss_pred             CccEEEecc-c-CCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeee
Q 042636           86 YLQRLYLTG-N-MKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTL  162 (219)
Q Consensus        86 ~L~~L~l~~-~-~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  162 (219)
                      +|++|++++ . ++.+| ..+..+++|++|++++|.+.......+..+++|+.|+++.+..........+.+++|+.|++
T Consensus       124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  203 (549)
T 2z81_A          124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL  203 (549)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred             CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence            444444443 2 23332 23344444555555544444333334444445555544411111100001123566666666


Q ss_pred             cccCCcceEEEc----CCcccccceeeeecCC
Q 042636          163 FDFVAVKSVIIE----KGAMPDIRELGIGPFP  190 (219)
Q Consensus       163 ~~~~~~~~~~~~----~~~~p~L~~L~l~~~~  190 (219)
                      .++. +....+.    ...+++|+.|++.++.
T Consensus       204 ~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          204 RDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             ESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             cCCc-cccccccccchhhhhhcccceeccccc
Confidence            6543 2222111    1235667777777653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=2.9e-14  Score=126.75  Aligned_cols=132  Identities=19%  Similarity=0.137  Sum_probs=98.1

Q ss_pred             cCCccc--ccccccccccccc--ChHhHHHHhcccccceeeeeeCCC-Chh-HHHHHHhccC-------CCCeEEEEecC
Q 042636            4 VHRGLG--SLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNG-NGK-DVCALIANLE-------NLESLTVLMAS   70 (219)
Q Consensus         4 lP~~l~--~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~-~~~-~~~~~l~~l~-------~L~~L~l~~~~   70 (219)
                      +|++++  ++++|++|++.++  ...+|..++++++|+.|+++. +. ..+ .++..+++++       +|+.|++++|.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~-N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC-NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT-CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC-CCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            888888  9999999999887  677788889999999999983 33 444 6777777665       89999998887


Q ss_pred             CCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCc-cceeeec
Q 042636           71 KDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPN-LLELRLG  139 (219)
Q Consensus        71 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~  139 (219)
                      .........+..++ +|+.|++++ .++.+| .+..+++|+.|++++|.+... +..+..+++ |+.|+++
T Consensus       560 L~~ip~~~~l~~L~-~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~l-p~~l~~l~~~L~~L~Ls  627 (876)
T 4ecn_A          560 LEEFPASASLQKMV-KLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLGFS  627 (876)
T ss_dssp             CCBCCCHHHHTTCT-TCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCC-CTTSCEECTTCCEEECC
T ss_pred             CCccCChhhhhcCC-CCCEEECCCCCcccch-hhcCCCcceEEECcCCccccc-hHHHhhccccCCEEECc
Confidence            66221111355565 888888887 666777 677788888888888877733 345667777 8888887

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.48  E-value=4.1e-14  Score=109.86  Aligned_cols=160  Identities=19%  Similarity=0.171  Sum_probs=118.1

Q ss_pred             cccCC-cccccccccccccccc-ChHhHHH-HhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCccccc
Q 042636            2 AKVHR-GLGSLMDLQKLSIIEA-DSQVLKE-LMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDL   77 (219)
Q Consensus         2 ~~lP~-~l~~l~~L~~L~~~~~-~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~   77 (219)
                      ..+|. .++++++|++|++.++ ...++.. ++++++|++|+++.  +....+ ...+.++++|++|++++|......+ 
T Consensus        50 ~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-  126 (270)
T 2o6q_A           50 SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD--NKLQALPIGVFDQLVNLAELRLDRNQLKSLPP-  126 (270)
T ss_dssp             SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS--SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-
T ss_pred             CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC--CcCCcCCHhHcccccCCCEEECCCCccCeeCH-
Confidence            45554 6899999999999887 4445444 57899999999984  222222 2345788999999999987654432 


Q ss_pred             ccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCC
Q 042636           78 QSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWF  154 (219)
Q Consensus        78 ~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~  154 (219)
                      ..+..++ +|++|++++ .++.+|.. +..+++|+.|++++|.+...+...+..+++|+.|+++ +.... ........+
T Consensus       127 ~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l  204 (270)
T 2o6q_A          127 RVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSL  204 (270)
T ss_dssp             TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTC
T ss_pred             HHhCcCc-CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccc
Confidence            3345555 999999998 78777754 6789999999999999988777778899999999998 43322 111123457


Q ss_pred             cccceeeecccC
Q 042636          155 PKLQILTLFDFV  166 (219)
Q Consensus       155 ~~L~~L~l~~~~  166 (219)
                      ++|+.|++.+++
T Consensus       205 ~~L~~L~l~~N~  216 (270)
T 2o6q_A          205 EKLKMLQLQENP  216 (270)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cCCCEEEecCCC
Confidence            899999998765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.48  E-value=1.6e-13  Score=110.02  Aligned_cols=81  Identities=12%  Similarity=0.119  Sum_probs=37.9

Q ss_pred             hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCccccc
Q 042636          103 IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDI  181 (219)
Q Consensus       103 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L  181 (219)
                      +..+++|+.|++++|.+...+.  +..+++|+.|+++ +....  + .....+++|+.|++.++. +..+. ....+++|
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L  289 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQL  289 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTC
T ss_pred             hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCc-cCCCh-hhcCCCCC
Confidence            4445555555555555544322  4555666666655 22211  1 123345556666555432 33221 12334555


Q ss_pred             ceeeeecCC
Q 042636          182 RELGIGPFP  190 (219)
Q Consensus       182 ~~L~l~~~~  190 (219)
                      +.|++.+|.
T Consensus       290 ~~L~L~~n~  298 (347)
T 4fmz_A          290 NSLFLNNNQ  298 (347)
T ss_dssp             SEEECCSSC
T ss_pred             CEEECcCCc
Confidence            555555553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.47  E-value=6.3e-15  Score=117.70  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=30.4

Q ss_pred             cccC-Ccccccccccccccccc--ChHhHHHHhcccccceeeeee
Q 042636            2 AKVH-RGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRP   43 (219)
Q Consensus         2 ~~lP-~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~   43 (219)
                      ..+| ..++++++|++|++.++  ....+..++++++|++|+++.
T Consensus        67 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           67 SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            3443 46888888898888877  333456678888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.47  E-value=3e-14  Score=113.77  Aligned_cols=111  Identities=20%  Similarity=0.196  Sum_probs=76.1

Q ss_pred             cccCCcccccccccccccccc-ChHh-HHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQV-LKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS   79 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   79 (219)
                      ..+|.++.  .++++|++.++ ...+ +..++++++|++|+++. +......+..++++++|++|++++|.......  .
T Consensus        46 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~  120 (332)
T 2ft3_A           46 KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-NKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--N  120 (332)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGSTTCTTCCEEECCSSCCCSCCS--S
T ss_pred             cccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC-CccCccCHhHhhCcCCCCEEECCCCcCCccCc--c
Confidence            45676654  57888888877 3333 45688999999999984 22223335567889999999999876653321  1


Q ss_pred             CCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCC
Q 042636           80 LSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLT  120 (219)
Q Consensus        80 ~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~  120 (219)
                      +.  + +|++|++++ .++.+|. .+..+++|+.|++++|.+.
T Consensus       121 ~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          121 LP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             cc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            11  3 888888887 6666654 3667788888888877764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.47  E-value=3.4e-14  Score=113.89  Aligned_cols=175  Identities=16%  Similarity=0.199  Sum_probs=121.5

Q ss_pred             Ccccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcc
Q 042636            6 RGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPP   84 (219)
Q Consensus         6 ~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   84 (219)
                      ..++++++|++|++.++ ....+. ++.+++|++|+++.  +....+.. +..+++|+.|+++++.......   +...+
T Consensus       149 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~--n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~  221 (347)
T 4fmz_A          149 SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY--NQIEDISP-LASLTSLHYFTAYVNQITDITP---VANMT  221 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT--SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG---GGGCT
T ss_pred             cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC--Cccccccc-ccCCCccceeecccCCCCCCch---hhcCC
Confidence            34788899999998887 222222 78899999999984  22222222 6788899999998876654432   44445


Q ss_pred             cCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeee
Q 042636           85 QYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTL  162 (219)
Q Consensus        85 ~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l  162 (219)
                       +|++|++++ .++.++. +..+++|+.|++++|.+...  ..+..+++|+.|+++ +....  + .....+++|+.|++
T Consensus       222 -~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          222 -RLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFL  294 (347)
T ss_dssp             -TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEEC
T ss_pred             -cCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEEC
Confidence             899999988 6777765 77888999999999888764  467788999999998 33322  2 12346788999999


Q ss_pred             cccCCcceEEEcCCcccccceeeeecCCCCCcc
Q 042636          163 FDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMY  195 (219)
Q Consensus       163 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~  195 (219)
                      .++...+......+.+|+|+.|++.+|+ +..+
T Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~  326 (347)
T 4fmz_A          295 NNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI  326 (347)
T ss_dssp             CSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred             cCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence            8765322222223457889999999886 4443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.46  E-value=4.8e-14  Score=111.60  Aligned_cols=172  Identities=19%  Similarity=0.212  Sum_probs=127.1

Q ss_pred             ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636            8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY   86 (219)
Q Consensus         8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   86 (219)
                      ..++.+|++|++.++ ...++ .+..+++|++|+++.  +....+.. +.++++|++|++++|.....   +.+..++ +
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~--n~i~~~~~-~~~l~~L~~L~L~~n~l~~~---~~~~~l~-~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKD--NQITDLAP-LKNLTKITELELSGNPLKNV---SAIAGLQ-S  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS--SCCCCCGG-GTTCCSCCEEECCSCCCSCC---GGGTTCT-T
T ss_pred             HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccC--CcCCCChh-HccCCCCCEEEccCCcCCCc---hhhcCCC-C
Confidence            345788999998877 33333 688899999999995  22222222 78999999999999876543   3455566 9


Q ss_pred             ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecc
Q 042636           87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFD  164 (219)
Q Consensus        87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~  164 (219)
                      |++|++++ .++.++. +..+++|+.|++++|.+...+  .+..+++|+.|+++ +....  +. ....+++|+.|++.+
T Consensus       109 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          109 IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSD--LT-PLANLSKLTTLKADD  182 (308)
T ss_dssp             CCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCS
T ss_pred             CCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCC--Ch-hhcCCCCCCEEECCC
Confidence            99999998 7777764 788999999999999987753  37889999999998 43332  21 156789999999987


Q ss_pred             cCCcceEEEcCCcccccceeeeecCCCCCcch
Q 042636          165 FVAVKSVIIEKGAMPDIRELGIGPFPLWSMYI  196 (219)
Q Consensus       165 ~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~  196 (219)
                      +. +..+.. ...+++|+.|++++|. +..++
T Consensus       183 n~-l~~~~~-l~~l~~L~~L~L~~N~-l~~~~  211 (308)
T 1h6u_A          183 NK-ISDISP-LASLPNLIEVHLKNNQ-ISDVS  211 (308)
T ss_dssp             SC-CCCCGG-GGGCTTCCEEECTTSC-CCBCG
T ss_pred             Cc-cCcChh-hcCCCCCCEEEccCCc-cCccc
Confidence            54 444332 4568999999999975 44444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.46  E-value=3.2e-14  Score=108.41  Aligned_cols=182  Identities=15%  Similarity=0.099  Sum_probs=127.5

Q ss_pred             CcccCC-cccccccccccccccc--ChHhHH-HHhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCccc
Q 042636            1 VAKVHR-GLGSLMDLQKLSIIEA--DSQVLK-ELMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEIL   75 (219)
Q Consensus         1 i~~lP~-~l~~l~~L~~L~~~~~--~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~   75 (219)
                      |..+|. .++++++|++|++.++  ...++. .++++++|++|+++. ++....+ ...+.++++|++|++++|......
T Consensus        43 l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~-~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp  121 (239)
T 2xwt_C           43 LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN-TRNLTYIDPDALKELPLLKFLGIFNTGLKMFP  121 (239)
T ss_dssp             CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE-ETTCCEECTTSEECCTTCCEEEEEEECCCSCC
T ss_pred             ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC-CCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc
Confidence            345666 5889999999999887  344444 578999999999983 1222222 234678999999999998765532


Q ss_pred             ccccCCCcccCcc---EEEecc--cCCCCCh-hhhcCCCcc-EEEEeeecCCCCCCccccCCCccceeeeccccCCceEE
Q 042636           76 DLQSLSSPPQYLQ---RLYLTG--NMKKLPD-WIFKLKNVI-RLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFH  148 (219)
Q Consensus        76 ~~~~~~~~~~~L~---~L~l~~--~~~~l~~-~~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  148 (219)
                         .+...+ +|+   +|++++  .++.+|. .+..+++|+ .|++++|.+...+...+.. ++|+.|+++++..-..+.
T Consensus       122 ---~~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~  196 (239)
T 2xwt_C          122 ---DLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVID  196 (239)
T ss_dssp             ---CCTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEEC
T ss_pred             ---cccccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCC
Confidence               244444 666   999987  4666654 477899999 9999999988655555555 899999998441112232


Q ss_pred             -EccCCC-cccceeeecccCCcceEEEcCCcccccceeeeecCCC
Q 042636          149 -FEAGWF-PKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPL  191 (219)
Q Consensus       149 -~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  191 (219)
                       .....+ ++|+.|++.++. +..++  ...+++|+.|.+.++..
T Consensus       197 ~~~~~~l~~~L~~L~l~~N~-l~~l~--~~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          197 KDAFGGVYSGPSLLDVSQTS-VTALP--SKGLEHLKELIARNTWT  238 (239)
T ss_dssp             TTTTTTCSBCCSEEECTTCC-CCCCC--CTTCTTCSEEECTTC--
T ss_pred             HHHhhccccCCcEEECCCCc-cccCC--hhHhccCceeeccCccC
Confidence             223456 899999999744 55443  34789999999988754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.45  E-value=5.7e-14  Score=110.32  Aligned_cols=167  Identities=19%  Similarity=0.152  Sum_probs=113.8

Q ss_pred             ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636            8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY   86 (219)
Q Consensus         8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   86 (219)
                      ..++.+|++|++.++ ...+ +.++.+++|++|+++.  +....+.. +.++++|++|++++|.....   +.+..++ +
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~--n~l~~~~~-l~~l~~L~~L~l~~n~l~~~---~~l~~l~-~  113 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNG--NKLTDIKP-LANLKNLGWLFLDENKVKDL---SSLKDLK-K  113 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCS--SCCCCCGG-GTTCTTCCEEECCSSCCCCG---GGGTTCT-T
T ss_pred             hhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccC--CccCCCcc-cccCCCCCEEECCCCcCCCC---hhhccCC-C
Confidence            345677888887776 2223 3477888888888884  22222222 77888888888888765443   3355555 8


Q ss_pred             ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecc
Q 042636           87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFD  164 (219)
Q Consensus        87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~  164 (219)
                      |++|++++ .++.++ .+..+++|+.|++++|.+...  ..+..+++|+.|+++ +...+.  . ....+++|+.|++.+
T Consensus       114 L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          114 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--V-PLAGLTKLQNLYLSK  187 (291)
T ss_dssp             CCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G-GGTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc--h-hhcCCCccCEEECCC
Confidence            88888887 666663 567788888888888887764  567788888888887 433321  1 255678888888886


Q ss_pred             cCCcceEEEcCCcccccceeeeecCC
Q 042636          165 FVAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       165 ~~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                      +. ++.+. ....+++|+.|++.+++
T Consensus       188 N~-i~~l~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          188 NH-ISDLR-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             SC-CCBCG-GGTTCTTCSEEEEEEEE
T ss_pred             Cc-CCCCh-hhccCCCCCEEECcCCc
Confidence            53 44443 24567888888888764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.45  E-value=6e-14  Score=103.90  Aligned_cols=149  Identities=17%  Similarity=0.140  Sum_probs=104.1

Q ss_pred             hcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC-CChhhhcCCC
Q 042636           31 MKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKN  108 (219)
Q Consensus        31 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l~~~~~~l~~  108 (219)
                      +.+++|+.|++++  .....++ .+..+++|++|++++|....   ++.+..++ +|++|++++ .++. .+..+..+++
T Consensus        41 ~~l~~L~~L~l~~--n~i~~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~  113 (197)
T 4ezg_A           41 AQMNSLTYITLAN--INVTDLT-GIEYAHNIKDLTINNIHATN---YNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTS  113 (197)
T ss_dssp             HHHHTCCEEEEES--SCCSCCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred             hhcCCccEEeccC--CCccChH-HHhcCCCCCEEEccCCCCCc---chhhhcCC-CCCEEEeECCccCcccChhhcCCCC
Confidence            4577888888884  2222333 47888899999998874432   33455555 899999987 5654 4667778889


Q ss_pred             ccEEEEeeecCCCCCCccccCCCccceeeecccc-CCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeee
Q 042636          109 VIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTY-NYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIG  187 (219)
Q Consensus       109 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~  187 (219)
                      |++|++++|.+....+..+..+++|+.|+++.+. ... +. ....+++|+.|++.++. +..+. ....+|+|+.|++.
T Consensus       114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAF  189 (197)
T ss_dssp             CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEEC
T ss_pred             CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEee
Confidence            9999999888876556677888999999998332 222 22 34567889999988754 44443 34568889999988


Q ss_pred             cCC
Q 042636          188 PFP  190 (219)
Q Consensus       188 ~~~  190 (219)
                      +++
T Consensus       190 ~N~  192 (197)
T 4ezg_A          190 SQT  192 (197)
T ss_dssp             BC-
T ss_pred             Ccc
Confidence            764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.44  E-value=3.6e-14  Score=120.38  Aligned_cols=184  Identities=15%  Similarity=0.071  Sum_probs=122.2

Q ss_pred             CcccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      ++.+|.++.  .+|++|++.++  ....+..++++++|++|+++. +......+..++++++|++|++++|......+ .
T Consensus        17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~   92 (549)
T 2z81_A           17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS-SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-S   92 (549)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-H
T ss_pred             cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCC-CCcCccChhhccccccCCEEECCCCccCccCH-H
Confidence            356787765  68888988877  333456688899999999884 22222233557888899999998887654432 2


Q ss_pred             cCCCcccCccEEEecc-cCCC--CChhhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeeccccCCceEEEccCCC
Q 042636           79 SLSSPPQYLQRLYLTG-NMKK--LPDWIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWF  154 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~--l~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  154 (219)
                      .+..++ +|++|++++ .++.  .|..+..+++|++|++++|. +...+...+..+++|++|+++.+............+
T Consensus        93 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  171 (549)
T 2z81_A           93 WFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI  171 (549)
T ss_dssp             HHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             HhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence            244555 899999987 6664  45677888899999999887 333444567888999999997332222122234456


Q ss_pred             cccceeeecccCCcceEEE-cCCcccccceeeeecCC
Q 042636          155 PKLQILTLFDFVAVKSVII-EKGAMPDIRELGIGPFP  190 (219)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~-~~~~~p~L~~L~l~~~~  190 (219)
                      ++|++|++..+.. ..++. ..+.+++|+.|++.++.
T Consensus       172 ~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          172 RDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTN  207 (549)
T ss_dssp             SEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCB
T ss_pred             ccCceEecccCcc-cccchhhHhhcccccEEEccCCc
Confidence            7888888875432 22111 11247889999988864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.44  E-value=1.4e-13  Score=116.19  Aligned_cols=128  Identities=18%  Similarity=0.135  Sum_probs=98.0

Q ss_pred             CcccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      +..+|.++.  ++|++|++.++  ....+..++++++|++|+++. +...+..+..++++++|++|++++|..... +  
T Consensus        12 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p--   85 (520)
T 2z7x_B           12 LIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISH-NRIQYLDISVFKFNQELEYLDLSHNKLVKI-S--   85 (520)
T ss_dssp             CSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCS-SCCCEEEGGGGTTCTTCCEEECCSSCCCEE-E--
T ss_pred             ccccccccc--ccccEEECCCCcccccChhhccccccccEEecCC-CccCCcChHHhhcccCCCEEecCCCceeec-C--
Confidence            457888776  89999999988  444557899999999999994 333333356789999999999999877543 2  


Q ss_pred             cCCCcccCccEEEecc-cCCC--CChhhhcCCCccEEEEeeecCCCCCCccccCCCcc--ceeeec
Q 042636           79 SLSSPPQYLQRLYLTG-NMKK--LPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL--LELRLG  139 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~  139 (219)
                      .. ..+ +|++|++++ .++.  +|..+..+++|++|++++|.+...   .+..+++|  +.|+++
T Consensus        86 ~~-~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~  146 (520)
T 2z7x_B           86 CH-PTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLV  146 (520)
T ss_dssp             CC-CCC-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEE
T ss_pred             cc-ccC-CccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEee
Confidence            22 455 999999998 6665  578899999999999999988763   34555666  888876

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.44  E-value=7.5e-15  Score=116.36  Aligned_cols=180  Identities=18%  Similarity=0.119  Sum_probs=104.1

Q ss_pred             ccCCcc--cccccccccccccc-ChHhHHHHhcc-----cccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcc
Q 042636            3 KVHRGL--GSLMDLQKLSIIEA-DSQVLKELMKL-----RQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEI   74 (219)
Q Consensus         3 ~lP~~l--~~l~~L~~L~~~~~-~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~   74 (219)
                      .+|..+  +++++|++|++.++ ....|..++.+     ++|++|+++. +...+..+..++++++|++|++++|.....
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred             hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence            356655  67777777777776 22224555555     7777777773 222222224566777777777777664332


Q ss_pred             cc-cccC--CCcccCccEEEecc-cCCCCC---hh-hhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec-cccCC
Q 042636           75 LD-LQSL--SSPPQYLQRLYLTG-NMKKLP---DW-IFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNY  144 (219)
Q Consensus        75 ~~-~~~~--~~~~~~L~~L~l~~-~~~~l~---~~-~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~  144 (219)
                      .. ...+  ...+ +|++|++++ .++.++   .. +..+++|+.|++++|.+.+.. ...+..+++|+.|+++ +... 
T Consensus       189 ~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-  266 (312)
T 1wwl_A          189 RGLISALCPLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-  266 (312)
T ss_dssp             HHHHHHSCTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred             hHHHHHHHhccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence            11 1111  3344 777777776 555332   22 245677777777777776643 2445556777777777 3332 


Q ss_pred             ceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCC
Q 042636          145 KLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       145 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                       .++  ...+++|+.|++.++. ++.++. .+.+++|+.|++.+++
T Consensus       267 -~ip--~~~~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          267 -QVP--KGLPAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             -SCC--SSCCSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred             -hhh--hhccCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence             122  1222677777777543 444432 4557777777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.43  E-value=1.1e-13  Score=118.84  Aligned_cols=167  Identities=19%  Similarity=0.151  Sum_probs=119.6

Q ss_pred             ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636            8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY   86 (219)
Q Consensus         8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   86 (219)
                      +..+.+|++|++..+ ...+ +.++.+++|+.|+++.  +....+.. +.++++|+.|++++|.....   +.+..++ +
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~--N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---~~l~~l~-~  110 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNG--NKLTDIKP-LTNLKNLGWLFLDENKIKDL---SSLKDLK-K  110 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTT--SCCCCCGG-GGGCTTCCEEECCSSCCCCC---TTSTTCT-T
T ss_pred             hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeC--CCCCCChh-hccCCCCCEEECcCCCCCCC---hhhccCC-C
Confidence            456778888888777 3333 3588899999999984  22222222 78889999999998766443   3555566 8


Q ss_pred             ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecc
Q 042636           87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFD  164 (219)
Q Consensus        87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~  164 (219)
                      |+.|++++ .+..++ .+..+++|+.|++++|.+...  ..+..+++|+.|+++ +...+. ..  ...+++|+.|++.+
T Consensus       111 L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          111 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP--LAGLTKLQNLYLSK  184 (605)
T ss_dssp             CCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC-GG--GTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc-hh--hccCCCCCEEECcC
Confidence            99999987 676664 577889999999999988764  567889999999998 444322 12  56688999999987


Q ss_pred             cCCcceEEEcCCcccccceeeeecCC
Q 042636          165 FVAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       165 ~~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                      +. +..++ ....+++|+.|++.+|+
T Consensus       185 N~-i~~l~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          185 NH-ISDLR-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             SC-CCBCG-GGTTCTTCSEEECCSEE
T ss_pred             CC-CCCCh-HHccCCCCCEEEccCCc
Confidence            54 45442 34568889999888764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.42  E-value=4.3e-14  Score=112.27  Aligned_cols=183  Identities=16%  Similarity=0.082  Sum_probs=104.0

Q ss_pred             ccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc--------
Q 042636           10 SLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS--------   79 (219)
Q Consensus        10 ~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--------   79 (219)
                      .+++|++|++.++  ....+..++++++|++|+++. +...+ ... +.++++|++|++++|..........        
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~-~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~  108 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYE-TLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN  108 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT-SCCEE-EEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC-CcCCc-chh-hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence            4557888888777  344456788888888888874 22111 111 6777788888887765432211000        


Q ss_pred             -------CCCcccCccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccc-cCCCccceeeeccccCCceEEE
Q 042636           80 -------LSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVP-HALPNLLELRLGGTYNYKLFHF  149 (219)
Q Consensus        80 -------~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~  149 (219)
                             ....+ +|++|++++ .++.++ ..+..+++|+.|++++|.+...+...+ ..+++|+.|+++.+.... +. 
T Consensus       109 n~l~~~~~~~~~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~-  185 (317)
T 3o53_A          109 NNISRVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK-  185 (317)
T ss_dssp             SCCSEEEECCCS-SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EE-
T ss_pred             CccCCcCccccC-CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cc-
Confidence                   00122 566666655 444443 245556777777777776665443333 356777777776222111 21 


Q ss_pred             ccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHh
Q 042636          150 EAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTD  200 (219)
Q Consensus       150 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~  200 (219)
                      ....+++|+.|++.++. +..++.....+++|+.|+++++ .+..+|..+.
T Consensus       186 ~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~  234 (317)
T 3o53_A          186 GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALR  234 (317)
T ss_dssp             CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCC
T ss_pred             cccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhh
Confidence            22236777777777543 4555444455677888888776 4555655443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.42  E-value=7.9e-14  Score=107.10  Aligned_cols=160  Identities=24%  Similarity=0.263  Sum_probs=117.4

Q ss_pred             CcccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      +..+|.++.  .++++|++.++  ....+..++++++|++|+++. +.........+.++++|++|++++|...... ..
T Consensus        26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~  101 (251)
T 3m19_A           26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLANNQLASLP-LG  101 (251)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TT
T ss_pred             ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-CcCCccCHhHhccCCcCCEEECCCCcccccC-hh
Confidence            356787765  58899998887  333445688999999999994 2222222344688999999999998765443 23


Q ss_pred             cCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCc
Q 042636           79 SLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFP  155 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~  155 (219)
                      .+..++ +|++|++++ .++.+|.. +..+++|+.|++++|.+...+...+..+++|+.|+++ +....- .......++
T Consensus       102 ~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~  179 (251)
T 3m19_A          102 VFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLG  179 (251)
T ss_dssp             TTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCT
T ss_pred             HhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCC
Confidence            445555 999999998 78877654 5789999999999999988776678899999999998 444321 112234578


Q ss_pred             ccceeeecccC
Q 042636          156 KLQILTLFDFV  166 (219)
Q Consensus       156 ~L~~L~l~~~~  166 (219)
                      +|+.|++.+++
T Consensus       180 ~L~~L~l~~N~  190 (251)
T 3m19_A          180 KLQTITLFGNQ  190 (251)
T ss_dssp             TCCEEECCSCC
T ss_pred             CCCEEEeeCCc
Confidence            88888888654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=1.6e-14  Score=121.31  Aligned_cols=180  Identities=16%  Similarity=0.061  Sum_probs=103.4

Q ss_pred             cccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc------------
Q 042636           13 DLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ------------   78 (219)
Q Consensus        13 ~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------------   78 (219)
                      +|++|++.++  ....+..++++++|++|+++. +...+..+  +.++++|++|++++|.........            
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTT-SCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeC-CCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence            6777777766  333345567777777777763 21111111  566667777776665432211100            


Q ss_pred             ---cCCCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCcccc-CCCccceeeec-cccCCceEEEcc
Q 042636           79 ---SLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPH-ALPNLLELRLG-GTYNYKLFHFEA  151 (219)
Q Consensus        79 ---~~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~-~~~~~~~~~~~~  151 (219)
                         .....+ +|+.|++++ .++.+ |..+..+++|+.|++++|.+.+.++..+. .+++|+.|+++ +... . + ...
T Consensus       112 ~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~-~-~~~  187 (487)
T 3oja_A          112 SRVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D-V-KGQ  187 (487)
T ss_dssp             CCEEECCCS-SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-E-E-ECC
T ss_pred             CCCCccccC-CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-c-c-ccc
Confidence               001122 667777766 55543 34556677788888877777664444443 67788888887 3332 1 2 222


Q ss_pred             CCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhh
Q 042636          152 GWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDH  201 (219)
Q Consensus       152 ~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~  201 (219)
                      ..+++|+.|++.++. +..++...+.+++|+.|+++++. +..+|.++..
T Consensus       188 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~  235 (487)
T 3oja_A          188 VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRF  235 (487)
T ss_dssp             CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCC
T ss_pred             ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-Ccccchhhcc
Confidence            346788888887644 55554445567888888888753 5556655433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.42  E-value=1.1e-13  Score=120.30  Aligned_cols=161  Identities=21%  Similarity=0.188  Sum_probs=116.6

Q ss_pred             CcccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      +..+|..+.  +++++|++.++  ....+..++++++|++|+++. +...+..+..++++++|++|++++|...... ..
T Consensus        16 L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~   91 (680)
T 1ziw_A           16 LTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELSQLS-DK   91 (680)
T ss_dssp             CSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCS-SCCCCCCTTHHHHCTTCCEEECCSSCCCCCC-TT
T ss_pred             ccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCC-CccCccCHHHHhcccCcCEEECCCCccCccC-hh
Confidence            356887775  68999999887  333344689999999999984 2222333456788999999999998665432 23


Q ss_pred             cCCCcccCccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceE-EEccCCC
Q 042636           79 SLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLF-HFEAGWF  154 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~-~~~~~~~  154 (219)
                      .+...+ +|++|++++ .++.++ ..+..+++|++|++++|.+...+...+..+++|++|+++ +...+... .+.....
T Consensus        92 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  170 (680)
T 1ziw_A           92 TFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN  170 (680)
T ss_dssp             TTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred             hhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence            455566 999999998 777765 567889999999999999988777778899999999998 43322110 0112235


Q ss_pred             cccceeeecccC
Q 042636          155 PKLQILTLFDFV  166 (219)
Q Consensus       155 ~~L~~L~l~~~~  166 (219)
                      ++|+.|++.++.
T Consensus       171 ~~L~~L~L~~n~  182 (680)
T 1ziw_A          171 SSLKKLELSSNQ  182 (680)
T ss_dssp             CEESEEECTTCC
T ss_pred             ccccEEECCCCc
Confidence            789999988653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.42  E-value=1e-13  Score=102.66  Aligned_cols=148  Identities=20%  Similarity=0.239  Sum_probs=111.9

Q ss_pred             ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636            8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY   86 (219)
Q Consensus         8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   86 (219)
                      .+++.+|++|++.++ ...++ .+..+++|++|+++. + .... +..+.++++|++|++++|...... ...+..++ +
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~-n-~~~~-~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~-~  113 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINN-I-HATN-YNPISGLSNLERLRIMGKDVTSDK-IPNLSGLT-S  113 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEES-C-CCSC-CGGGTTCTTCCEEEEECTTCBGGG-SCCCTTCT-T
T ss_pred             hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccC-C-CCCc-chhhhcCCCCCEEEeECCccCccc-ChhhcCCC-C
Confidence            467889999999887 44445 688999999999994 2 2222 236788999999999998765422 34566666 9


Q ss_pred             ccEEEecc-cCCC-CChhhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeee
Q 042636           87 LQRLYLTG-NMKK-LPDWIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTL  162 (219)
Q Consensus        87 L~~L~l~~-~~~~-l~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l  162 (219)
                      |++|++++ .++. .|..+..+++|+.|++++|. +...  ..+..+++|+.|+++ +....  +. ....+++|+.|++
T Consensus       114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l  188 (197)
T 4ezg_A          114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYA  188 (197)
T ss_dssp             CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEE
T ss_pred             CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEe
Confidence            99999998 6664 56778899999999999998 6554  368899999999998 44432  22 4456899999999


Q ss_pred             cccC
Q 042636          163 FDFV  166 (219)
Q Consensus       163 ~~~~  166 (219)
                      .++.
T Consensus       189 ~~N~  192 (197)
T 4ezg_A          189 FSQT  192 (197)
T ss_dssp             CBC-
T ss_pred             eCcc
Confidence            8754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.42  E-value=5e-14  Score=119.95  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=50.8

Q ss_pred             HHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC--hhhhcCCCccEEEEeeecCCCCCCccccC
Q 042636           53 ALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP--DWIFKLKNVIRLGLDLSGLTEDPLRVPHA  129 (219)
Q Consensus        53 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (219)
                      ..+.++++|++|++++|......+  .+...+ +|++|++++ .+...+  ..+..+++|+.|++++|.+.......+..
T Consensus       367 ~~~~~~~~L~~L~l~~n~l~~~~~--~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  443 (570)
T 2z63_A          367 QSDFGTTSLKYLDLSFNGVITMSS--NFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  443 (570)
T ss_dssp             HHHHTCSCCCEEECCSCSEEEEEE--EEETCT-TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred             ccccccCccCEEECCCCccccccc--cccccC-CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence            344556666666666554332211  133333 566666554 333322  23445555555555555554443444555


Q ss_pred             CCccceeeec-cccCCceEEEccCCCcccceeeeccc
Q 042636          130 LPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDF  165 (219)
Q Consensus       130 l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~  165 (219)
                      +++|+.|+++ +......++.....+++|+.|++.++
T Consensus       444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence            5555555555 22221112222333445555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.40  E-value=2.5e-14  Score=114.18  Aligned_cols=182  Identities=21%  Similarity=0.258  Sum_probs=126.3

Q ss_pred             cCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCC-CChh-HHHHHHhccCCCCeEEEEec-CCCcccccc
Q 042636            4 VHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKN-GNGK-DVCALIANLENLESLTVLMA-SKDEILDLQ   78 (219)
Q Consensus         4 lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~   78 (219)
                      +|..++++++|++|++.++  ....+..++++++|++|+++. + .... .+...+.++++|++|++++| .........
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~-~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG-CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT-CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC-CCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence            5556788999999999988  677888999999999999994 3 2333 46677889999999999998 554321111


Q ss_pred             cCCCcccCccEEEeccc---C--CCCChhhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeecccc-CCceEEEcc
Q 042636           79 SLSSPPQYLQRLYLTGN---M--KKLPDWIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLGGTY-NYKLFHFEA  151 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~~---~--~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~  151 (219)
                      .+...+.+|++|+++++   +  ..+|..+..+++|+.|++++|. +.+..+..+..+++|+.|+++.+. .........
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence            12222228999999873   3  2356677889999999999998 665556778899999999998432 111111123


Q ss_pred             CCCcccceeeecccCCcceEEEcCCcc-cccceeeeecCC
Q 042636          152 GWFPKLQILTLFDFVAVKSVIIEKGAM-PDIRELGIGPFP  190 (219)
Q Consensus       152 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-p~L~~L~l~~~~  190 (219)
                      ..+++|+.|++.++  +..-.+  ..+ ..++.|++.++.
T Consensus       269 ~~~~~L~~L~l~~~--i~~~~~--~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          269 GEIPTLKTLQVFGI--VPDGTL--QLLKEALPHLQINCSH  304 (336)
T ss_dssp             GGCTTCCEEECTTS--SCTTCH--HHHHHHSTTSEESCCC
T ss_pred             hcCCCCCEEeccCc--cCHHHH--HHHHhhCcceEEeccc
Confidence            45899999999976  221111  112 346777776543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.40  E-value=3.3e-13  Score=102.29  Aligned_cols=132  Identities=19%  Similarity=0.187  Sum_probs=90.7

Q ss_pred             cccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      ..+|.++.  ++|++|++.++  ....+..++++++|++|+++.  +....+. ..+.++++|++|++++|......+ .
T Consensus        32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~  106 (229)
T 3e6j_A           32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS--NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-A  106 (229)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-T
T ss_pred             CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC--CCCCCcChhhcccCCCcCEEECCCCcCCccCh-h
Confidence            45676654  67888888777  333355677788888888874  2222222 235677888888888876544322 2


Q ss_pred             cCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           79 SLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      .+..++ +|+.|++++ .++.+|..+..+++|+.|++++|.+...+...+..+++|+.|++.
T Consensus       107 ~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A          107 VFDRLV-HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             TTTTCT-TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             HhCcch-hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            334455 888888887 777788777888888888888888877655667778888888886

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.40  E-value=1.4e-13  Score=122.61  Aligned_cols=183  Identities=16%  Similarity=0.078  Sum_probs=123.1

Q ss_pred             cccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCcccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      ..+|.   ..+++++|+++++  ....+.+++++++|++|+++. +.....+ +..+.++++|++|++++|......+ .
T Consensus        17 ~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~-n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~   91 (844)
T 3j0a_A           17 TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-D   91 (844)
T ss_dssp             SCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECT-TCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-T
T ss_pred             CCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCC-CCCccccCHHHhcCCCCCCEEECCCCcCcccCH-h
Confidence            45776   3468889998887  344456788999999999983 3233333 4567889999999999877654432 4


Q ss_pred             cCCCcccCccEEEecc-cCCC-CChh--hhcCCCccEEEEeeecCCCCCC-ccccCCCccceeeec-cccCCceEEEccC
Q 042636           79 SLSSPPQYLQRLYLTG-NMKK-LPDW--IFKLKNVIRLGLDLSGLTEDPL-RVPHALPNLLELRLG-GTYNYKLFHFEAG  152 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~-~~~~~~~~~~~~~  152 (219)
                      .+.+.+ +|++|++++ .+.. .|..  +..+++|++|++++|.+..... ..++++++|+.|+++ +...+. ......
T Consensus        92 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~  169 (844)
T 3j0a_A           92 AFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELE  169 (844)
T ss_dssp             SSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGH
T ss_pred             HccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcc
Confidence            555566 999999987 5654 4433  7788999999999998877543 467899999999998 333221 111111


Q ss_pred             CC--cccceeeecccCCcceEEEcCCcccc------cceeeeecCCC
Q 042636          153 WF--PKLQILTLFDFVAVKSVIIEKGAMPD------IRELGIGPFPL  191 (219)
Q Consensus       153 ~~--~~L~~L~l~~~~~~~~~~~~~~~~p~------L~~L~l~~~~~  191 (219)
                      .+  ++|+.|++.++......+...+.+++      |+.|++.++.-
T Consensus       170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  216 (844)
T 3j0a_A          170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW  216 (844)
T ss_dssp             HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred             cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence            22  67888888865533333332233333      88888888743

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.40  E-value=5.2e-14  Score=111.76  Aligned_cols=189  Identities=11%  Similarity=0.042  Sum_probs=124.6

Q ss_pred             Ccccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHH--HH---------------HhccCCCCeEEEE
Q 042636            6 RGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVC--AL---------------IANLENLESLTVL   67 (219)
Q Consensus         6 ~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~---------------l~~l~~L~~L~l~   67 (219)
                      ..++++++|++|++.++ ....+. ++.+++|++|+++.  +....+.  ..               ...+++|++|+++
T Consensus        52 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~--n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~  128 (317)
T 3o53_A           52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN--NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA  128 (317)
T ss_dssp             HHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS--SEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECC
T ss_pred             HHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC--CccccccCCCCcCEEECCCCccCCcCccccCCCCEEECC
Confidence            46888999999998887 222222 78888899888874  1111110  00               1123456666666


Q ss_pred             ecCCCcccccccCCCcccCccEEEecc-cCCCC-Chhh-hcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccC
Q 042636           68 MASKDEILDLQSLSSPPQYLQRLYLTG-NMKKL-PDWI-FKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYN  143 (219)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l-~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~  143 (219)
                      +|......+ ..+..++ +|++|++++ .++.+ +..+ ..+++|+.|++++|.+...  .....+++|+.|+++ +...
T Consensus       129 ~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          129 NNKITMLRD-LDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA  204 (317)
T ss_dssp             SSCCCSGGG-BCTGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCC
T ss_pred             CCCCCCccc-hhhhccC-CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCC
Confidence            665544322 2344455 999999998 66664 3344 4789999999999998764  333458999999998 4332


Q ss_pred             CceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCC-CcchhHHhhhhh
Q 042636          144 YKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLW-SMYIFLTDHILD  204 (219)
Q Consensus       144 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l-~~~~~~~~~l~~  204 (219)
                        .+......+++|+.|++.++. +..++.....+++|+.|++.+++-. +.++..+..+..
T Consensus       205 --~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~  263 (317)
T 3o53_A          205 --FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (317)
T ss_dssp             --EECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred             --cchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence              233334567899999999764 6666555567899999999998755 345555554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.39  E-value=1.9e-13  Score=121.78  Aligned_cols=115  Identities=16%  Similarity=0.082  Sum_probs=61.0

Q ss_pred             CCcccccccccccccccc--ChHh-HHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccc-cccC
Q 042636            5 HRGLGSLMDLQKLSIIEA--DSQV-LKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILD-LQSL   80 (219)
Q Consensus         5 P~~l~~l~~L~~L~~~~~--~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~   80 (219)
                      |..++++++|++|++.++  ...+ +..++++++|++|+++. +......+..++++++|++|++++|....... ...+
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT-CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC-CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence            455666677777766655  2333 44566666677666662 22222224445666666666666655443221 1123


Q ss_pred             CCcccCccEEEecc-cCCCC--ChhhhcCCCccEEEEeeecCCC
Q 042636           81 SSPPQYLQRLYLTG-NMKKL--PDWIFKLKNVIRLGLDLSGLTE  121 (219)
Q Consensus        81 ~~~~~~L~~L~l~~-~~~~l--~~~~~~l~~L~~L~l~~~~~~~  121 (219)
                      ...+ +|++|++++ .+..+  +..+..+++|+.|++++|.+..
T Consensus       120 ~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          120 RNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             SSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             cccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            3344 666666665 44432  2345566666666666665544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.39  E-value=1.6e-13  Score=102.28  Aligned_cols=124  Identities=19%  Similarity=0.169  Sum_probs=62.0

Q ss_pred             ccccccccccc-ChHhHH-HHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccccccCCCcccCcc
Q 042636           12 MDLQKLSIIEA-DSQVLK-ELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQ   88 (219)
Q Consensus        12 ~~L~~L~~~~~-~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~   88 (219)
                      .++++|++.++ ...++. .++++++|++|+++.  +....+. ..+.++++|++|++++|......+ ..+...+ +|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~  103 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG--NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLT-QLK  103 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT-TCC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCC--CccCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCcc-CCC
Confidence            35666666555 222222 245566666666663  1111111 123555666666666654432211 2223333 666


Q ss_pred             EEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           89 RLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        89 ~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      +|++++ .++.++.. +..+++|+.|++++|.+...+...+..+++|+.|+++
T Consensus       104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  156 (208)
T 2o6s_A          104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH  156 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence            666655 45554433 3555666666666666555444445556666666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.38  E-value=9.8e-13  Score=109.70  Aligned_cols=97  Identities=22%  Similarity=0.193  Sum_probs=45.3

Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF  163 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~  163 (219)
                      +|++|++++ .++.++. +..+++|+.|++++|.+.+.+  .+..+++|+.|+++ +...+. .  ....+++|+.|++.
T Consensus       266 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~-~--~~~~l~~L~~L~l~  339 (466)
T 1o6v_A          266 KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDI-S--PVSSLTKLQRLFFY  339 (466)
T ss_dssp             TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCC-G--GGGGCTTCCEEECC
T ss_pred             CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCc-h--hhccCccCCEeECC
Confidence            555555554 3444432 444555555555555554422  24455556666555 222211 1  12345555555555


Q ss_pred             ccCCcceEEEcCCcccccceeeeecCC
Q 042636          164 DFVAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                      ++. +..+ ...+.+++|+.|++.+|.
T Consensus       340 ~n~-l~~~-~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          340 NNK-VSDV-SSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             SSC-CCCC-GGGTTCTTCCEEECCSSC
T ss_pred             CCc-cCCc-hhhccCCCCCEEeCCCCc
Confidence            442 2222 122345556666665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.38  E-value=8.3e-14  Score=116.90  Aligned_cols=191  Identities=10%  Similarity=0.034  Sum_probs=127.8

Q ss_pred             CCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHH-----------------HHhccCCCCeEEE
Q 042636            5 HRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCA-----------------LIANLENLESLTV   66 (219)
Q Consensus         5 P~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----------------~l~~l~~L~~L~l   66 (219)
                      |..++++++|++|++.++ ....++ ++.+++|++|+++.  +....++.                 ....+++|+.|++
T Consensus        51 ~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~--N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L  127 (487)
T 3oja_A           51 AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN--NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYL  127 (487)
T ss_dssp             GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCS--SEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEEC
T ss_pred             HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecC--CcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEEC
Confidence            457899999999999888 222222 88889999998884  11111100                 0012456677777


Q ss_pred             EecCCCcccccccCCCcccCccEEEecc-cCCC-CChhhh-cCCCccEEEEeeecCCCCCCccccCCCccceeeec-ccc
Q 042636           67 LMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-LPDWIF-KLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTY  142 (219)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~  142 (219)
                      ++|......+ ..+..++ +|+.|++++ .++. .|.++. .+++|+.|++++|.+...  .....+++|+.|+++ +..
T Consensus       128 ~~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          128 ANNKITMLRD-LDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL  203 (487)
T ss_dssp             CSSCCCSGGG-BCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCC
T ss_pred             CCCCCCCCCc-hhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCC
Confidence            7665544332 2334455 999999998 6665 455554 789999999999998765  334469999999998 444


Q ss_pred             CCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCC-CcchhHHhhhhhh
Q 042636          143 NYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLW-SMYIFLTDHILDQ  205 (219)
Q Consensus       143 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l-~~~~~~~~~l~~~  205 (219)
                      .+  ++.....+++|+.|++.++. +..++...+.+++|+.|++.+++-. ..+|..+..+...
T Consensus       204 ~~--~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          204 AF--MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             CE--ECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred             CC--CCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence            32  33334567899999999754 6666555567899999999998754 3445555544433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.38  E-value=4.4e-13  Score=111.63  Aligned_cols=170  Identities=16%  Similarity=0.051  Sum_probs=88.6

Q ss_pred             cccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636            7 GLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ   85 (219)
Q Consensus         7 ~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   85 (219)
                      .++++++|++|++.++ ...++ +++.+++|++|+++.  +....+  .++++++|++|++++|..... +   +...+ 
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~--n~l~~~--~~~~l~~L~~L~Ls~N~l~~~-~---~~~l~-  106 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTS--NNITTL--DLSQNTNLTYLACDSNKLTNL-D---VTPLT-  106 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCS--SCCSCC--CCTTCTTCSEEECCSSCCSCC-C---CTTCT-
T ss_pred             ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccC--CcCCeE--ccccCCCCCEEECcCCCCcee-e---cCCCC-
Confidence            3556677777777666 22233 566777777777764  111111  156666777777776654432 1   33344 


Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccc-cCCceEE---------------
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGT-YNYKLFH---------------  148 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~---------------  148 (219)
                      +|++|++++ .++.+|  +..+++|++|++++|.+.+.+   ++.+++|+.|+++.+ ..+. +.               
T Consensus       107 ~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          107 KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITK-LDVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             TCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCC-CCCTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCcccc-cccccCCcCCEEECCCC
Confidence            666666665 555554  455666666666666655432   344455555555421 1111 10               


Q ss_pred             ----EccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcch
Q 042636          149 ----FEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYI  196 (219)
Q Consensus       149 ----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~  196 (219)
                          .....+++|+.|++.++. ++.+  +.+.+++|+.|++.++. +..+|
T Consensus       181 ~l~~l~l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N~-l~~ip  228 (457)
T 3bz5_A          181 KITELDVSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSNK-LTEID  228 (457)
T ss_dssp             CCCCCCCTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSSC-CSCCC
T ss_pred             ccceeccccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCCc-ccccC
Confidence                113344555555555432 3332  23456777777777653 33343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.38  E-value=5.1e-13  Score=111.41  Aligned_cols=166  Identities=19%  Similarity=0.225  Sum_probs=108.6

Q ss_pred             cccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636            9 GSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL   87 (219)
Q Consensus         9 ~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L   87 (219)
                      +.+++|++|++.++ ...+ ..++.+++|++|+++. + ...... .+.++++|+.|++++|......+   +...+ +|
T Consensus       218 ~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~-n-~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~---~~~l~-~L  289 (466)
T 1o6v_A          218 GILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLAN-N-QISNLA-PLSGLTKLTELKLGANQISNISP---LAGLT-AL  289 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-S-CCCCCG-GGTTCTTCSEEECCSSCCCCCGG---GTTCT-TC
T ss_pred             cccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCC-C-ccccch-hhhcCCCCCEEECCCCccCcccc---ccCCC-cc
Confidence            34444555554444 1111 2345566666666663 1 111111 15667777777777765544322   44455 99


Q ss_pred             cEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeeccc
Q 042636           88 QRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDF  165 (219)
Q Consensus        88 ~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~  165 (219)
                      +.|++++ .++.++. +..+++|+.|++++|.+.+...  +..+++|+.|+++ +...+  + .....+++|+.|++.++
T Consensus       290 ~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          290 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--V-SSLANLTNINWLSAGHN  363 (466)
T ss_dssp             SEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSS
T ss_pred             CeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC--c-hhhccCCCCCEEeCCCC
Confidence            9999998 7777664 7789999999999999877533  6789999999998 43332  2 23456899999999976


Q ss_pred             CCcceEEEcCCcccccceeeeecCC
Q 042636          166 VAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       166 ~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                      . +..+. +.+.+++|+.|++.+|+
T Consensus       364 ~-l~~~~-~~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          364 Q-ISDLT-PLANLTRITQLGLNDQA  386 (466)
T ss_dssp             C-CCBCG-GGTTCTTCCEEECCCEE
T ss_pred             c-cCccc-hhhcCCCCCEEeccCCc
Confidence            5 44333 25678999999998874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.37  E-value=1.2e-12  Score=108.93  Aligned_cols=117  Identities=20%  Similarity=0.163  Sum_probs=57.7

Q ss_pred             ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636            8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY   86 (219)
Q Consensus         8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   86 (219)
                      ++++++|++|++.++ ...+  +++++++|++|+++. +...+.+  .+..+++|+.|++++|..... +   +...+ +
T Consensus       123 ~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~-n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~---l~~l~-~  192 (457)
T 3bz5_A          123 VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHL-NKKITKL--DVTPQTQLTTLDCSFNKITEL-D---VSQNK-L  192 (457)
T ss_dssp             CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTT-CSCCCCC--CCTTCTTCCEEECCSSCCCCC-C---CTTCT-T
T ss_pred             CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCC-CCccccc--ccccCCcCCEEECCCCcccee-c---cccCC-C
Confidence            667777777777766 2222  256677777776663 2122222  245566666666666544332 1   22223 4


Q ss_pred             ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      |+.|++++ .++.++  +..+++|+.|++++|.+.+.+   +..+++|+.|+++
T Consensus       193 L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~  241 (457)
T 3bz5_A          193 LNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCS  241 (457)
T ss_dssp             CCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECC
T ss_pred             CCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC---ccccCCCCEEEee
Confidence            55555544 333332  334444555555444444421   3344444444444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.37  E-value=3e-13  Score=114.10  Aligned_cols=36  Identities=19%  Similarity=0.129  Sum_probs=20.1

Q ss_pred             cccccccccccccccc--ChHhHHHHhcccccceeeee
Q 042636            7 GLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIR   42 (219)
Q Consensus         7 ~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~   42 (219)
                      .++++++|++|++.++  ....+..++++++|++|+++
T Consensus        40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B           40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred             hccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence            4556666666666655  22234455556666666655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.36  E-value=7.7e-14  Score=118.78  Aligned_cols=183  Identities=16%  Similarity=0.077  Sum_probs=129.1

Q ss_pred             cccccccccccccc-ChH---hHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcc
Q 042636            9 GSLMDLQKLSIIEA-DSQ---VLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPP   84 (219)
Q Consensus         9 ~~l~~L~~L~~~~~-~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   84 (219)
                      ..+++|++|++.++ ...   .+..+..+++|++|+++.  +....++..+.++++|+.|++++|......+...+...+
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~--n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  421 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF--NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  421 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS--CSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC--CccccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence            56778888888776 222   257788899999999983  222223333678999999999987654443333455556


Q ss_pred             cCccEEEecc-cCCC-CChhhhcCCCccEEEEeeecCCC-CCCccccCCCccceeeeccccCCceEEEccCCCcccceee
Q 042636           85 QYLQRLYLTG-NMKK-LPDWIFKLKNVIRLGLDLSGLTE-DPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILT  161 (219)
Q Consensus        85 ~~L~~L~l~~-~~~~-l~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  161 (219)
                       +|++|++++ .+.. .|..+..+++|+.|++++|.+.. ..+..+..+++|+.|+++.+......+.....+++|+.|+
T Consensus       422 -~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  500 (570)
T 2z63_A          422 -NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  500 (570)
T ss_dssp             -TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             -CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence             999999997 5554 56677889999999999998863 3346788999999999984332221122345678999999


Q ss_pred             ecccCCcceEEEc-CCcccccceeeeecCCCCCcc
Q 042636          162 LFDFVAVKSVIIE-KGAMPDIRELGIGPFPLWSMY  195 (219)
Q Consensus       162 l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~l~~~  195 (219)
                      +.++. +..+... .+.+++|+.|++.+++-....
T Consensus       501 l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          501 MASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             CCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCCCc-CCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence            99764 5544322 356899999999997644433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.36  E-value=3.2e-13  Score=115.12  Aligned_cols=130  Identities=20%  Similarity=0.147  Sum_probs=87.1

Q ss_pred             CcccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      ++.+|.++.  +++++|++.++  ....+..++++++|++|+++. +....-.+..+.++++|++|++++|..... +  
T Consensus        43 L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p--  116 (562)
T 3a79_B           43 LTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSH-NRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-S--  116 (562)
T ss_dssp             CCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECTTSCCCEE-C--
T ss_pred             CccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCC-CCCCcCCHHHhCCCCCCCEEECCCCcCCcc-C--
Confidence            346777664  68888888877  333345788899999999884 222222345578888899999988776533 2  


Q ss_pred             cCCCcccCccEEEecc-cCCCC--ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           79 SLSSPPQYLQRLYLTG-NMKKL--PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      .. ..+ +|++|++++ .++.+  |..+..+++|++|++++|.+....+..+..+ +|+.|+++
T Consensus       117 ~~-~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~  177 (562)
T 3a79_B          117 CC-PMA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLD  177 (562)
T ss_dssp             SC-CCT-TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEE
T ss_pred             cc-ccc-cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEee
Confidence            22 444 889999987 66664  4678888888888888888765433333333 33666655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.36  E-value=4.1e-13  Score=103.91  Aligned_cols=144  Identities=18%  Similarity=0.191  Sum_probs=89.3

Q ss_pred             cccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636            7 GLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ   85 (219)
Q Consensus         7 ~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   85 (219)
                      .+.++++|++|++.++ ...++ .++.+++|++|+++.  +....+.. +.++++|++|++++|.......   +.. + 
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~--N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~---~~~-~-  106 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSH--NQISDLSP-LKDLTKLEELSVNRNRLKNLNG---IPS-A-  106 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCS--SCCCCCGG-GTTCSSCCEEECCSSCCSCCTT---CCC-S-
T ss_pred             chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCC--CccCCChh-hccCCCCCEEECCCCccCCcCc---ccc-C-
Confidence            3566677777777766 33333 567777788777774  22222222 6777778888887776544322   222 3 


Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF  163 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~  163 (219)
                      +|++|++++ .++.++ .+..+++|+.|++++|.+.+.  ..+..+++|+.|+++ +...+.   .....+++|+.|++.
T Consensus       107 ~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          107 CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLT  180 (263)
T ss_dssp             SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEE
T ss_pred             cccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCC
Confidence            777777776 666654 466777788888877777654  356677778888777 333221   233456777777776


Q ss_pred             cc
Q 042636          164 DF  165 (219)
Q Consensus       164 ~~  165 (219)
                      ++
T Consensus       181 ~N  182 (263)
T 1xeu_A          181 GQ  182 (263)
T ss_dssp             EE
T ss_pred             CC
Confidence            54

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.34  E-value=1.6e-12  Score=102.03  Aligned_cols=149  Identities=22%  Similarity=0.306  Sum_probs=113.0

Q ss_pred             ccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCC
Q 042636            3 KVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLS   81 (219)
Q Consensus         3 ~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~   81 (219)
                      .+| +++.+++|++|++.++ ...++. ++++++|++|+++.  +....+ ..+.++++|++|++++|.....   +.+.
T Consensus        60 ~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~--n~l~~~-~~l~~l~~L~~L~L~~n~i~~~---~~l~  131 (291)
T 1h6t_A           60 SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE--NKVKDL-SSLKDLKKLKSLSLEHNGISDI---NGLV  131 (291)
T ss_dssp             CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS--SCCCCG-GGGTTCTTCCEEECTTSCCCCC---GGGG
T ss_pred             cCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC--CcCCCC-hhhccCCCCCEEECCCCcCCCC---hhhc
Confidence            444 4888999999999888 333333 89999999999995  222222 3478899999999999876553   3455


Q ss_pred             CcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccce
Q 042636           82 SPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQI  159 (219)
Q Consensus        82 ~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~  159 (219)
                      ..+ +|+.|++++ .++.+ ..+..+++|+.|++++|.+...+.  +..+++|+.|+++ +....  +. ....+++|+.
T Consensus       132 ~l~-~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~--l~-~l~~l~~L~~  204 (291)
T 1h6t_A          132 HLP-QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDV  204 (291)
T ss_dssp             GCT-TCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSE
T ss_pred             CCC-CCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC--Ch-hhccCCCCCE
Confidence            555 999999998 77777 578889999999999999887543  8899999999998 44322  22 3456889999


Q ss_pred             eeecccC
Q 042636          160 LTLFDFV  166 (219)
Q Consensus       160 L~l~~~~  166 (219)
                      |++.+++
T Consensus       205 L~l~~n~  211 (291)
T 1h6t_A          205 LELFSQE  211 (291)
T ss_dssp             EEEEEEE
T ss_pred             EECcCCc
Confidence            9998654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.34  E-value=2e-13  Score=118.67  Aligned_cols=39  Identities=13%  Similarity=0.105  Sum_probs=27.5

Q ss_pred             CCcccccccccccccccc--ChHhH-HHHhcccccceeeeee
Q 042636            5 HRGLGSLMDLQKLSIIEA--DSQVL-KELMKLRQLRKLGIRP   43 (219)
Q Consensus         5 P~~l~~l~~L~~L~~~~~--~~~~~-~~l~~l~~L~~L~l~~   43 (219)
                      |..++.+++|++|++.++  ...++ ..++.+++|++|+++.
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~  439 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY  439 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence            556788888888888777  22333 4567778888887773

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.33  E-value=3.8e-13  Score=104.12  Aligned_cols=164  Identities=16%  Similarity=0.152  Sum_probs=119.7

Q ss_pred             ccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCcc
Q 042636           10 SLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQ   88 (219)
Q Consensus        10 ~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~   88 (219)
                      ++.++..+++.++ ...++ .+..+++|+.|+++.  .....+. .+.++++|+.|++++|......+   +..++ +|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~--n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~-~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDN--SNIQSLA-GMQFFTNLKELHLSHNQISDLSP---LKDLT-KLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTT--SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCS-SCC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcC--CCcccch-HHhhCCCCCEEECCCCccCCChh---hccCC-CCC
Confidence            4556666666655 23333 567889999999984  2222232 57889999999999987655433   55566 999


Q ss_pred             EEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636           89 RLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV  166 (219)
Q Consensus        89 ~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~  166 (219)
                      .|++++ .++.+|....  ++|+.|++++|.+...  ..+..+++|+.|+++ +...+  +. ....+++|+.|++.++.
T Consensus        89 ~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           89 ELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             EEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSC
T ss_pred             EEECCCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCc
Confidence            999998 7777764333  8999999999998774  468899999999998 44432  22 34568899999999764


Q ss_pred             CcceEEEcCCcccccceeeeecCC
Q 042636          167 AVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       167 ~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                       +..+ .....+++|+.|++.+++
T Consensus       162 -i~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          162 -ITNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             -CCBC-TTSTTCCCCCEEEEEEEE
T ss_pred             -Ccch-HHhccCCCCCEEeCCCCc
Confidence             5544 334568999999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=9.9e-14  Score=118.36  Aligned_cols=179  Identities=16%  Similarity=0.097  Sum_probs=111.8

Q ss_pred             cccccccccccccc-ChHhHHHHhcccccceeeeeeC------------CCChhHHHHHHhccCCCCeEE-EEecCCCcc
Q 042636            9 GSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPK------------NGNGKDVCALIANLENLESLT-VLMASKDEI   74 (219)
Q Consensus         9 ~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~------------~~~~~~~~~~l~~l~~L~~L~-l~~~~~~~~   74 (219)
                      ...++|+.|+++++ ...+|++++++++|+.|++...            ....+..+..++++++|+.|+ ++.+.....
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            55678888888877 6778888888888888886520            012334455566666676666 333211100


Q ss_pred             c-------ccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCc
Q 042636           75 L-------DLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYK  145 (219)
Q Consensus        75 ~-------~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~  145 (219)
                      .       .+..+. . ..|+.|++++ .++.+|. +..+++|+.|++++|.+... +..++.+++|+.|+++ +...+ 
T Consensus       426 ~~l~l~~n~i~~l~-~-~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~-  500 (567)
T 1dce_A          426 RSKFLLENSVLKME-Y-ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN-  500 (567)
T ss_dssp             HHHHHHHHHHHHHH-H-TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCC-
T ss_pred             hhhhhhcccccccC-c-cCceEEEecCCCCCCCcC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCC-
Confidence            0       011111 1 1577788877 6777775 77778888888888877744 3467778888888887 44433 


Q ss_pred             eEEEccCCCcccceeeecccCCcceE--EEcCCcccccceeeeecCCCCCcch
Q 042636          146 LFHFEAGWFPKLQILTLFDFVAVKSV--IIEKGAMPDIRELGIGPFPLWSMYI  196 (219)
Q Consensus       146 ~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~p~L~~L~l~~~~~l~~~~  196 (219)
                       ++ ..+.+++|+.|++.++. +..+  +...+.+++|+.|++++++ +..+|
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~  549 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE  549 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred             -Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence             33 45567788888887643 4444  3334567888888888764 44443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.32  E-value=1.1e-12  Score=98.77  Aligned_cols=132  Identities=17%  Similarity=0.153  Sum_probs=64.5

Q ss_pred             ccCCcccccccccccccccc-ChHhH-HHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636            3 KVHRGLGSLMDLQKLSIIEA-DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL   80 (219)
Q Consensus         3 ~lP~~l~~l~~L~~L~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   80 (219)
                      .+|..+.  .++++|++.++ ...++ ..+..+++|+.|+++. +....-.+..+.++++|++|++++|......+ ..+
T Consensus        25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f  100 (220)
T 2v9t_B           25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKITELPK-SLF  100 (220)
T ss_dssp             SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS-SCCCEECTTTTTTCSSCCEEECCSSCCCCCCT-TTT
T ss_pred             cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC-CcCCCcCHHHhhCCcCCCEEECCCCcCCccCH-hHc
Confidence            4455443  35555655555 22222 2355556666666652 11111123344555666666666554432211 222


Q ss_pred             CCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           81 SSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        81 ~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      .+++ +|++|++++ .++.+ |..+..+++|+.|++++|.+...+...+..+++|+.|+++
T Consensus       101 ~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B          101 EGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence            3333 566666655 44443 3344555566666666665555444445555666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.32  E-value=1.6e-13  Score=111.65  Aligned_cols=132  Identities=13%  Similarity=0.149  Sum_probs=61.5

Q ss_pred             cccccccccccccccc-----ChHhHHH-------Hhcccccceeeeee---CCCChhHHHHHHhccCCCCeEEEEecCC
Q 042636            7 GLGSLMDLQKLSIIEA-----DSQVLKE-------LMKLRQLRKLGIRP---KNGNGKDVCALIANLENLESLTVLMASK   71 (219)
Q Consensus         7 ~l~~l~~L~~L~~~~~-----~~~~~~~-------l~~l~~L~~L~l~~---~~~~~~~~~~~l~~l~~L~~L~l~~~~~   71 (219)
                      .+.++++|++|++.++     ...+|..       +.++++|++|+++.   .......++..+.++++|++|++++|..
T Consensus        55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            3555666666666554     1122322       34566666666663   1111123555566666666666666544


Q ss_pred             Ccccc--c-ccCCCc---------ccCccEEEecc-cCC--CCC---hhhhcCCCccEEEEeeecCCCCC----Cc-ccc
Q 042636           72 DEILD--L-QSLSSP---------PQYLQRLYLTG-NMK--KLP---DWIFKLKNVIRLGLDLSGLTEDP----LR-VPH  128 (219)
Q Consensus        72 ~~~~~--~-~~~~~~---------~~~L~~L~l~~-~~~--~l~---~~~~~l~~L~~L~l~~~~~~~~~----~~-~l~  128 (219)
                      .....  + ..+...         + +|++|++++ .++  .++   ..+..+++|++|++++|.+....    .. .+.
T Consensus       135 ~~~~~~~l~~~l~~l~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~  213 (386)
T 2ca6_A          135 GPQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA  213 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred             CHHHHHHHHHHHHHHhhhhhcccCC-CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence            21110  0 011111         2 566666654 333  122   23344556666666655554210    11 344


Q ss_pred             CCCccceeeec
Q 042636          129 ALPNLLELRLG  139 (219)
Q Consensus       129 ~l~~L~~L~l~  139 (219)
                      .+++|+.|+++
T Consensus       214 ~~~~L~~L~Ls  224 (386)
T 2ca6_A          214 YCQELKVLDLQ  224 (386)
T ss_dssp             GCTTCCEEECC
T ss_pred             cCCCccEEECc
Confidence            55556666555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.30  E-value=2.4e-12  Score=110.61  Aligned_cols=149  Identities=22%  Similarity=0.295  Sum_probs=113.4

Q ss_pred             ccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCC
Q 042636            3 KVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLS   81 (219)
Q Consensus         3 ~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~   81 (219)
                      .+| +++.+++|++|++..+ ...++. +.++++|+.|+++.  +....+ ..+.++++|+.|++++|.....   +.+.
T Consensus        57 ~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~--N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l---~~l~  128 (605)
T 1m9s_A           57 SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE--NKIKDL-SSLKDLKKLKSLSLEHNGISDI---NGLV  128 (605)
T ss_dssp             CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS--SCCCCC-TTSTTCTTCCEEECTTSCCCCC---GGGG
T ss_pred             CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC--CCCCCC-hhhccCCCCCEEEecCCCCCCC---cccc
Confidence            444 5889999999999888 333333 88999999999995  222222 2578899999999999876553   3455


Q ss_pred             CcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccce
Q 042636           82 SPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQI  159 (219)
Q Consensus        82 ~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~  159 (219)
                      .++ +|+.|+++. .+..+ ..+..+++|+.|++++|.+...+.  +..+++|+.|+++ +...+  + .....+++|+.
T Consensus       129 ~l~-~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~--l-~~l~~l~~L~~  201 (605)
T 1m9s_A          129 HLP-QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--L-RALAGLKNLDV  201 (605)
T ss_dssp             GCT-TCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB--C-GGGTTCTTCSE
T ss_pred             CCC-ccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC--C-hHHccCCCCCE
Confidence            566 999999998 77777 577889999999999999887543  8899999999998 44322  2 23566889999


Q ss_pred             eeecccC
Q 042636          160 LTLFDFV  166 (219)
Q Consensus       160 L~l~~~~  166 (219)
                      |++.+++
T Consensus       202 L~L~~N~  208 (605)
T 1m9s_A          202 LELFSQE  208 (605)
T ss_dssp             EECCSEE
T ss_pred             EEccCCc
Confidence            9998654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.29  E-value=1.8e-12  Score=96.62  Aligned_cols=158  Identities=20%  Similarity=0.093  Sum_probs=103.9

Q ss_pred             ccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCcc
Q 042636           33 LRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVI  110 (219)
Q Consensus        33 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~  110 (219)
                      .++|++|+++. +.........+.++++|++|++++|...... ...+..++ +|++|++++ .++.+|.. +..+++|+
T Consensus        27 ~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~  103 (208)
T 2o6s_A           27 PAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLT-SLTYLNLSTNQLQSLPNGVFDKLTQLK  103 (208)
T ss_dssp             CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCC-CcCEEECCCCcCCccCHhHhcCccCCC
Confidence            45788888884 2111111223577888999999887665432 22344455 899999987 67776644 57788999


Q ss_pred             EEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecC
Q 042636          111 RLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPF  189 (219)
Q Consensus       111 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~  189 (219)
                      .|++++|.+...+...+..+++|+.|+++ +.... ........+++|+.|++.+++.       .+.+|.|+.|.+..+
T Consensus       104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWIN  175 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCB-------CCCTTTTHHHHHHHH
T ss_pred             EEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCe-------ecCCCCHHHHHHHHH
Confidence            99999888887666667888999999997 43322 1111234577888888886542       234677777777766


Q ss_pred             CCCCcchhHHhh
Q 042636          190 PLWSMYIFLTDH  201 (219)
Q Consensus       190 ~~l~~~~~~~~~  201 (219)
                      ..-+.+|..+..
T Consensus       176 ~~~g~ip~~~~~  187 (208)
T 2o6s_A          176 KHSGVVRNSAGS  187 (208)
T ss_dssp             HCTTTBBCTTSS
T ss_pred             hCCceeeccCcc
Confidence            555556654443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.27  E-value=6.6e-12  Score=107.00  Aligned_cols=100  Identities=18%  Similarity=0.122  Sum_probs=42.3

Q ss_pred             CccEEEecc-cCCC-CChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceee
Q 042636           86 YLQRLYLTG-NMKK-LPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILT  161 (219)
Q Consensus        86 ~L~~L~l~~-~~~~-l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~  161 (219)
                      +|++|++++ .++. +|.. +..+++|+.|++++|.+.+..+..+.  ++|+.|+++ +...  .++.....+++|+.|+
T Consensus       404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~  479 (562)
T 3a79_B          404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM--SIPKDVTHLQALQELN  479 (562)
T ss_dssp             TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC--CCCTTTTSSCCCSEEE
T ss_pred             CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc--ccChhhcCCCCCCEEE
Confidence            444444444 3333 3322 23344445555544444332111111  355555554 2221  1222222455566666


Q ss_pred             ecccCCcceEEEc-CCcccccceeeeecCC
Q 042636          162 LFDFVAVKSVIIE-KGAMPDIRELGIGPFP  190 (219)
Q Consensus       162 l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~  190 (219)
                      +.++. +..++.. .+.+++|+.|++.+++
T Consensus       480 L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          480 VASNQ-LKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             CCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence            65432 3333322 2345566666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.27  E-value=4.8e-13  Score=108.91  Aligned_cols=129  Identities=18%  Similarity=0.207  Sum_probs=61.3

Q ss_pred             cccccccccccccc--Ch----HhHHHHhcccccceeeeeeCCCChh----HHHHHHhcc---------CCCCeEEEEec
Q 042636            9 GSLMDLQKLSIIEA--DS----QVLKELMKLRQLRKLGIRPKNGNGK----DVCALIANL---------ENLESLTVLMA   69 (219)
Q Consensus         9 ~~l~~L~~L~~~~~--~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~l---------~~L~~L~l~~~   69 (219)
                      .++++|++|++.++  ..    .++..+.++++|++|+++. +....    .+...+..+         ++|++|++++|
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN-NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcC-CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            45566666666555  22    3455556666666666652 22221    122223333         56666666665


Q ss_pred             CCCcc-cc-c-ccCCCcccCccEEEecc-cCCC------CChhhhcCCCccEEEEeeecCCC----CCCccccCCCccce
Q 042636           70 SKDEI-LD-L-QSLSSPPQYLQRLYLTG-NMKK------LPDWIFKLKNVIRLGLDLSGLTE----DPLRVPHALPNLLE  135 (219)
Q Consensus        70 ~~~~~-~~-~-~~~~~~~~~L~~L~l~~-~~~~------l~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~  135 (219)
                      ..... .+ + ..+...+ +|++|++++ .++.      .|.++..+++|+.|++++|.+..    .....+..+++|+.
T Consensus       170 ~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            44311 11 0 1222233 566666655 3331      12244555666666666665531    11223455566666


Q ss_pred             eeec
Q 042636          136 LRLG  139 (219)
Q Consensus       136 L~l~  139 (219)
                      |+++
T Consensus       249 L~L~  252 (386)
T 2ca6_A          249 LGLN  252 (386)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            6665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.26  E-value=1.9e-12  Score=102.35  Aligned_cols=171  Identities=17%  Similarity=0.079  Sum_probs=88.7

Q ss_pred             cccccccccc--ChHhHHHH--hcccccceeeeeeCCCChhH---H-HHHHhccCCCCeEEEEecCCCcccccccCCCcc
Q 042636           13 DLQKLSIIEA--DSQVLKEL--MKLRQLRKLGIRPKNGNGKD---V-CALIANLENLESLTVLMASKDEILDLQSLSSPP   84 (219)
Q Consensus        13 ~L~~L~~~~~--~~~~~~~l--~~l~~L~~L~l~~~~~~~~~---~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   84 (219)
                      +|++|++.++  ....+..+  +++++|++|+++. +.....   . ...+..+++|++|++++|...... ...+..++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~  169 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRN-VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS-CEQVRAFP  169 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEES-CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC-TTSCCCCT
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeec-ccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh-HHHhccCC
Confidence            4566665555  23333444  5666666666664 111110   1 123445667777777766553332 23344444


Q ss_pred             cCccEEEecc-cCCC---C--ChhhhcCCCccEEEEeeecCCCCCCc---cccCCCccceeeec-cccCCceEEEccCC-
Q 042636           85 QYLQRLYLTG-NMKK---L--PDWIFKLKNVIRLGLDLSGLTEDPLR---VPHALPNLLELRLG-GTYNYKLFHFEAGW-  153 (219)
Q Consensus        85 ~~L~~L~l~~-~~~~---l--~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~-~~~~~~~~~~~~~~-  153 (219)
                       +|++|++++ .+..   +  +.+...+++|++|++++|.+...+..   .++.+++|++|+++ +...+. .+..... 
T Consensus       170 -~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~  247 (310)
T 4glp_A          170 -ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT-VNPSAPRC  247 (310)
T ss_dssp             -TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-CCSCCSSC
T ss_pred             -CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc-chhhHHhc
Confidence             677777766 3322   1  12234566777777777766532111   23566777777777 333221 1111122 


Q ss_pred             --CcccceeeecccCCcceEEEcCCcccccceeeeecCC
Q 042636          154 --FPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       154 --~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                        +++|++|++.++. ++.++  ...+++|+.|+++++.
T Consensus       248 ~~~~~L~~L~Ls~N~-l~~lp--~~~~~~L~~L~Ls~N~  283 (310)
T 4glp_A          248 MWSSALNSLNLSFAG-LEQVP--KGLPAKLRVLDLSSNR  283 (310)
T ss_dssp             CCCTTCCCEECCSSC-CCSCC--SCCCSCCSCEECCSCC
T ss_pred             cCcCcCCEEECCCCC-CCchh--hhhcCCCCEEECCCCc
Confidence              2677788777543 44432  2334778888887763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.26  E-value=4.2e-12  Score=108.20  Aligned_cols=174  Identities=12%  Similarity=0.025  Sum_probs=110.6

Q ss_pred             cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL   80 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   80 (219)
                      ..+|.++.  ++|++|++.++ ...+|   +.+++|++|+++.  +....++. +.+  +|++|++++|.....   +. 
T Consensus        72 ~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~--N~l~~ip~-l~~--~L~~L~Ls~N~l~~l---p~-  137 (571)
T 3cvr_A           72 SSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACD--NRLSTLPE-LPA--SLKHLDVDNNQLTML---PE-  137 (571)
T ss_dssp             SCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCS--SCCSCCCC-CCT--TCCEEECCSSCCSCC---CC-
T ss_pred             CccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccC--CCCCCcch-hhc--CCCEEECCCCcCCCC---CC-
Confidence            34566553  56777777766 33444   4567788887774  22222222 333  788888887765442   22 


Q ss_pred             CCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCccc-
Q 042636           81 SSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKL-  157 (219)
Q Consensus        81 ~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L-  157 (219)
                       .++ +|+.|++++ .++.+|.   .+++|+.|++++|.+...+.  +.  ++|+.|+++ +...  .++. ..  ++| 
T Consensus       138 -~l~-~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~--~lp~-~~--~~L~  203 (571)
T 3cvr_A          138 -LPA-LLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE--SLPA-VP--VRNH  203 (571)
T ss_dssp             -CCT-TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS--SCCC-CC------
T ss_pred             -cCc-cccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC--chhh-HH--Hhhh
Confidence             233 888888887 6777775   56788888888888877443  44  888888887 4332  1222 11  256 


Q ss_pred             ------ceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhhh
Q 042636          158 ------QILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILD  204 (219)
Q Consensus       158 ------~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~~  204 (219)
                            +.|++.++. ++.++...+.+++|+.|++.+++--..+|..+..+..
T Consensus       204 ~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          204 HSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             ----CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             cccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence                  888888654 5666554556899999999998766667777766654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=2.3e-13  Score=116.13  Aligned_cols=175  Identities=17%  Similarity=0.127  Sum_probs=123.7

Q ss_pred             cccCCcccccccccccccccc---------------ChHhHHHHhcccccceee-eeeCCCChhHHHH------HHhcc-
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA---------------DSQVLKELMKLRQLRKLG-IRPKNGNGKDVCA------LIANL-   58 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~---------------~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~------~l~~l-   58 (219)
                      ..+|++++++++|++|++.++               ....+..++.+++|+.|+ ++.  +....+..      .+..+ 
T Consensus       362 ~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~--n~~~~L~~l~l~~n~i~~l~  439 (567)
T 1dce_A          362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA--AYLDDLRSKFLLENSVLKME  439 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh--cccchhhhhhhhcccccccC
Confidence            468999999999999986433               234556788899999987 442  11111111      12222 


Q ss_pred             -CCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636           59 -ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL  136 (219)
Q Consensus        59 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  136 (219)
                       ..|+.|++++|.....   +.+..++ +|+.|++++ .++.+|..+..+++|+.|++++|.+.+.+  .++.+++|+.|
T Consensus       440 ~~~L~~L~Ls~n~l~~l---p~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L  513 (567)
T 1dce_A          440 YADVRVLHLAHKDLTVL---CHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQEL  513 (567)
T ss_dssp             HTTCSEEECTTSCCSSC---CCGGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEE
T ss_pred             ccCceEEEecCCCCCCC---cCccccc-cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEE
Confidence             3699999999876553   3355666 999999998 88899999999999999999999998753  78899999999


Q ss_pred             eec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCC----cccccceee
Q 042636          137 RLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKG----AMPDIRELG  185 (219)
Q Consensus       137 ~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~p~L~~L~  185 (219)
                      +++ +...+...+...+.+++|+.|++.++. +...+....    .+|+|+.|+
T Consensus       514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred             ECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence            998 444332103344568999999999765 443322111    267888775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.24  E-value=3.1e-12  Score=106.47  Aligned_cols=122  Identities=18%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             cccCCcccccccccccccccc--ChHhHHHHhccccc-------------ceeeeeeCCCChhHHHHHHhccCCCCeEEE
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQL-------------RKLGIRPKNGNGKDVCALIANLENLESLTV   66 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L-------------~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l   66 (219)
                      .++|++++++++|++|++.++  .+..|.+++++++|             ++|+++.  .....++.   -.++|++|++
T Consensus        24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~--~~l~~lp~---~~~~L~~L~l   98 (454)
T 1jl5_A           24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN--LGLSSLPE---LPPHLESLVA   98 (454)
T ss_dssp             ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT--SCCSCCCS---CCTTCSEEEC
T ss_pred             hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecC--CccccCCC---CcCCCCEEEc
Confidence            356777777777777777665  44555555555554             5555552  11111110   1245666666


Q ss_pred             EecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           67 LMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      ++|..... +  ..  . .+|++|++++ .++.+|..   .++|++|++++|.+.+.+  .++.+++|++|+++
T Consensus        99 ~~n~l~~l-p--~~--~-~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~  161 (454)
T 1jl5_A           99 SCNSLTEL-P--EL--P-QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVD  161 (454)
T ss_dssp             CSSCCSSC-C--CC--C-TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECC
T ss_pred             cCCcCCcc-c--cc--c-CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECC
Confidence            66544331 1  10  1 1455555544 33333311   134555555555544422  34455555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.22  E-value=1.2e-11  Score=106.46  Aligned_cols=15  Identities=13%  Similarity=0.184  Sum_probs=8.1

Q ss_pred             CCccEEEEeeecCCC
Q 042636          107 KNVIRLGLDLSGLTE  121 (219)
Q Consensus       107 ~~L~~L~l~~~~~~~  121 (219)
                      ++|+.|++++|.+..
T Consensus       181 ~~L~~L~Ls~N~l~~  195 (622)
T 3g06_A          181 SGLQELSVSDNQLAS  195 (622)
T ss_dssp             TTCCEEECCSSCCSC
T ss_pred             CCCcEEECCCCCCCC
Confidence            455555555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.21  E-value=2.2e-11  Score=104.90  Aligned_cols=59  Identities=14%  Similarity=0.108  Sum_probs=29.5

Q ss_pred             cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecC
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMAS   70 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~   70 (219)
                      ..+|..+.  ++|++|++.++ ...++.   .+++|++|+++.  +....++.   .+++|++|++++|.
T Consensus        53 ~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~--N~l~~lp~---~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           53 TTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSG--NQLTSLPV---LPPGLLELSIFSNP  112 (622)
T ss_dssp             SCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECS--CCCSCCCC---CCTTCCEEEECSCC
T ss_pred             CccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCC--CcCCcCCC---CCCCCCEEECcCCc
Confidence            44566554  56666666665 233332   456666666663  11112211   44555555555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.21  E-value=5.7e-12  Score=94.90  Aligned_cols=107  Identities=19%  Similarity=0.150  Sum_probs=46.4

Q ss_pred             HhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCC-ChhhhcCC
Q 042636           30 LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLK  107 (219)
Q Consensus        30 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~  107 (219)
                      ++++++|++|+++. +....-....+.++++|++|++++|......+ ..+...+ +|++|++++ .++.+ |..+..++
T Consensus        53 ~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~  129 (220)
T 2v70_A           53 FKKLPQLRKINFSN-NKITDIEEGAFEGASGVNEILLTSNRLENVQH-KMFKGLE-SLKTLMLRSNRITCVGNDSFIGLS  129 (220)
T ss_dssp             GGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCG-GGGTTCS-SCCEEECTTSCCCCBCTTSSTTCT
T ss_pred             hccCCCCCEEECCC-CcCCEECHHHhCCCCCCCEEECCCCccCccCH-hHhcCCc-CCCEEECCCCcCCeECHhHcCCCc
Confidence            44455555555552 11111111234445555555555544332211 1222333 555555554 34333 33344455


Q ss_pred             CccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636          108 NVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      +|+.|++++|.+...+...+..+++|+.|+++
T Consensus       130 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A          130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             TCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence            55555555555544433444455555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.20  E-value=1e-11  Score=99.85  Aligned_cols=136  Identities=16%  Similarity=0.078  Sum_probs=61.1

Q ss_pred             HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc--cCCCCCh-hhhcC-CCccEEEEeeecCCCCCCccccCC
Q 042636           55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG--NMKKLPD-WIFKL-KNVIRLGLDLSGLTEDPLRVPHAL  130 (219)
Q Consensus        55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~l~~-~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l  130 (219)
                      +.++++|++|++++|......+... .... ++..+++.+  .+..++. .+..+ ..++.|++++|.+...+...+ ..
T Consensus       100 f~~l~~L~~L~l~~n~l~~~~~~~~-~~~~-~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~  176 (350)
T 4ay9_X          100 FQNLPNLQYLLISNTGIKHLPDVHK-IHSL-QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NG  176 (350)
T ss_dssp             BCCCTTCCEEEEEEECCSSCCCCTT-CCBS-SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TT
T ss_pred             hhhccccccccccccccccCCchhh-cccc-hhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cc
Confidence            4566777777777765543322111 1111 344444432  2333321 12222 345666666666654332222 33


Q ss_pred             CccceeeeccccCCceEEE-ccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcch
Q 042636          131 PNLLELRLGGTYNYKLFHF-EAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYI  196 (219)
Q Consensus       131 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~  196 (219)
                      ++|+.|.+..+.....+.. ....+++|+.|+++++ .++.+  +.+.+.+|+.|.+.++.+++.+|
T Consensus       177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~l--p~~~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSL--PSYGLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCC--CSSSCTTCCEEECTTCTTCCCCC
T ss_pred             cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCcc--ChhhhccchHhhhccCCCcCcCC
Confidence            4555555542111111211 1233455666666543 23333  23345555555555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.19  E-value=3.8e-11  Score=90.35  Aligned_cols=108  Identities=14%  Similarity=0.079  Sum_probs=56.4

Q ss_pred             HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCc
Q 042636           55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPN  132 (219)
Q Consensus        55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  132 (219)
                      +.++++|++|++++|......+ ..+...+ +|++|++++ .++.++.. +..+++|++|++++|.+...+...+..+++
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  130 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEE-GAFEGAS-GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS  130 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECT-TTTTTCT-TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred             hccCCCCCEEECCCCcCCEECH-HHhCCCC-CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence            4556666666666655433221 2334444 666666665 55554432 455666666666666665554455566666


Q ss_pred             cceeeec-cccCCceEEEccCCCcccceeeeccc
Q 042636          133 LLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDF  165 (219)
Q Consensus       133 L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~  165 (219)
                      |+.|+++ +...+ ........+++|+.|++.++
T Consensus       131 L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          131 VRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCc
Confidence            6666665 22221 11112234455566655543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.17  E-value=5.7e-11  Score=89.39  Aligned_cols=128  Identities=15%  Similarity=0.096  Sum_probs=77.7

Q ss_pred             cccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCcc
Q 042636           34 RQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVI  110 (219)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~  110 (219)
                      ++++.|+++.  +....+ ...+.++++|++|++++|......+ ..+.+++ +|++|++++ .++.+|.. +..+++|+
T Consensus        32 ~~l~~L~l~~--n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~  107 (220)
T 2v9t_B           32 ETITEIRLEQ--NTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQ  107 (220)
T ss_dssp             TTCCEEECCS--SCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCEEECCC--CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCC
Confidence            5677777773  222222 2245667778888887766544322 3444555 778888877 66666654 45677788


Q ss_pred             EEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636          111 RLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV  166 (219)
Q Consensus       111 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~  166 (219)
                      .|++++|.+...+...+..+++|+.|+++ +....- .......+++|+.|++.+++
T Consensus       108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCCC
Confidence            88887777777666667777778877776 333221 11113345667777776543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.17  E-value=1.9e-11  Score=87.93  Aligned_cols=102  Identities=25%  Similarity=0.229  Sum_probs=61.7

Q ss_pred             ccccceeeeeeCCCCh-hHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC-CChhhhcCCCc
Q 042636           33 LRQLRKLGIRPKNGNG-KDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNV  109 (219)
Q Consensus        33 l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l~~~~~~l~~L  109 (219)
                      .++|++|+++. +... +.++..+.++++|++|++++|.....   ..+...+ +|++|++++ .++. +|..+..+++|
T Consensus        23 ~~~L~~L~l~~-n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           23 PAAVRELVLDN-CKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TTSCSEEECCS-CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             cccCCEEECCC-CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCC
Confidence            46677777763 1111 23344456667777777777655433   3444444 777777776 5555 56555567777


Q ss_pred             cEEEEeeecCCCCC-CccccCCCccceeeec
Q 042636          110 IRLGLDLSGLTEDP-LRVPHALPNLLELRLG  139 (219)
Q Consensus       110 ~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~  139 (219)
                      +.|++++|.+...+ ...+..+++|+.|+++
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~  128 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLF  128 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECC
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEee
Confidence            77777777766542 2456666777777766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.15  E-value=7.2e-12  Score=101.16  Aligned_cols=83  Identities=18%  Similarity=0.223  Sum_probs=36.1

Q ss_pred             HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccc---cC
Q 042636           55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVP---HA  129 (219)
Q Consensus        55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~  129 (219)
                      +.++++|++|++++|......+ ..+..++ +|+.|++++ .+..+ |..+..+++|+.|++++|.+...+...+   ..
T Consensus        84 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~  161 (361)
T 2xot_A           84 FVPVPNLRYLDLSSNHLHTLDE-FLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK  161 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCEECT-TTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred             ccCCCCCCEEECCCCcCCcCCH-HHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence            4445555555555544322211 1222333 555555554 34332 3334445555555555555544333333   33


Q ss_pred             CCccceeeec
Q 042636          130 LPNLLELRLG  139 (219)
Q Consensus       130 l~~L~~L~l~  139 (219)
                      +++|+.|+++
T Consensus       162 l~~L~~L~L~  171 (361)
T 2xot_A          162 LPKLMLLDLS  171 (361)
T ss_dssp             CTTCCEEECC
T ss_pred             CCcCCEEECC
Confidence            4555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.14  E-value=2.3e-11  Score=87.53  Aligned_cols=125  Identities=20%  Similarity=0.134  Sum_probs=96.8

Q ss_pred             ccccccccccccc-C--hHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636           10 SLMDLQKLSIIEA-D--SQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY   86 (219)
Q Consensus        10 ~l~~L~~L~~~~~-~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   86 (219)
                      ...+|++|++.++ .  ..++..++.+++|+.|+++.  +....+ ..+.++++|++|++++|......+ ..+...+ +
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~--n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~   96 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLIN--VGLISV-SNLPKLPKLKKLELSENRIFGGLD-MLAEKLP-N   96 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEES--SCCCCC-SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCT-T
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcC--CCCCCh-hhhccCCCCCEEECcCCcCchHHH-HHHhhCC-C
Confidence            3468899998887 3  36777788999999999995  222222 667889999999999988765322 1222245 9


Q ss_pred             ccEEEecc-cCCCCC--hhhhcCCCccEEEEeeecCCCCCC---ccccCCCccceeeec
Q 042636           87 LQRLYLTG-NMKKLP--DWIFKLKNVIRLGLDLSGLTEDPL---RVPHALPNLLELRLG  139 (219)
Q Consensus        87 L~~L~l~~-~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~  139 (219)
                      |+.|++++ .++.+|  ..+..+++|+.|++++|.+...+.   ..+..+++|++|+++
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  155 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY  155 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence            99999998 777766  577889999999999999987654   467899999999997

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.14  E-value=5.2e-12  Score=108.44  Aligned_cols=132  Identities=18%  Similarity=0.163  Sum_probs=78.8

Q ss_pred             cccCCcccccccccccccccc-ChHhH-HHHhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCcccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVL-KELMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      ++||.++.  .++++|+++++ ...++ .+|+++++|++|+++.  +....+ ..++.++++|++|++++|...... ..
T Consensus        44 ~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~--N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~  118 (635)
T 4g8a_A           44 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LG  118 (635)
T ss_dssp             SSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GG
T ss_pred             CccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCC--CcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HH
Confidence            45666553  35677777766 33333 3567777777777773  222222 224566777777777776554332 22


Q ss_pred             cCCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec
Q 042636           79 SLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG  139 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~  139 (219)
                      .+.+.+ +|++|++++ .++.+|. .+..+++|++|++++|.+.... ...++.+++|++|+++
T Consensus       119 ~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          119 AFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             GGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             HhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence            344444 777777776 5666553 3566777777777777765532 3455667777777776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.13  E-value=1.2e-10  Score=88.17  Aligned_cols=127  Identities=20%  Similarity=0.124  Sum_probs=53.5

Q ss_pred             CCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636           59 ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL  136 (219)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  136 (219)
                      ++|++|++++|......+ ..+..++ +|++|++++ .++.+|.. +..+++|+.|++++|.+...+...+..+++|+.|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~-~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEP-GVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCCT-TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccCH-HHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence            344555554444333211 2222233 455555544 44444322 3445555555555555544433344455555555


Q ss_pred             eec-cccCCceEEEccCCCcccceeeecccCCcceEEEc-CCcccccceeeeecCC
Q 042636          137 RLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFP  190 (219)
Q Consensus       137 ~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~  190 (219)
                      +++ +...  .++.....+++|+.|++.++. +..+... ...+++|+.|++.+++
T Consensus       118 ~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          118 FMCCNKLT--ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             ECCSSCCC--SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             eccCCccc--ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence            554 2221  122222334455555555432 3322211 2234555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.13  E-value=1.4e-12  Score=105.35  Aligned_cols=15  Identities=7%  Similarity=0.231  Sum_probs=7.8

Q ss_pred             HHHhccc-ccceeeee
Q 042636           28 KELMKLR-QLRKLGIR   42 (219)
Q Consensus        28 ~~l~~l~-~L~~L~l~   42 (219)
                      ..+.+++ +|++|+++
T Consensus        44 ~~l~~~~~~L~~L~Ls   59 (362)
T 3goz_A           44 QAFANTPASVTSLNLS   59 (362)
T ss_dssp             HHHHTCCTTCCEEECC
T ss_pred             HHHHhCCCceeEEECc
Confidence            3444555 55555555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.11  E-value=1.9e-12  Score=91.43  Aligned_cols=125  Identities=19%  Similarity=0.180  Sum_probs=72.3

Q ss_pred             ccccceeeeeeCCCCh-hHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC-CChhhhcCCCc
Q 042636           33 LRQLRKLGIRPKNGNG-KDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNV  109 (219)
Q Consensus        33 l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l~~~~~~l~~L  109 (219)
                      .++|++|+++. +... +.++..+.++++|++|++++|.....   ..+...+ +|++|++++ .++. +|..+..+++|
T Consensus        16 ~~~l~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDN-SRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTT-CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CccCeEEEccC-CcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCC-CCCEEECCCCcccchHHHHhhhCCCC
Confidence            45677777663 2111 23344456667777777776655433   3444444 777777776 5555 55555667777


Q ss_pred             cEEEEeeecCCCCC-CccccCCCccceeeec-cccCCceEE---EccCCCcccceeeec
Q 042636          110 IRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNYKLFH---FEAGWFPKLQILTLF  163 (219)
Q Consensus       110 ~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~---~~~~~~~~L~~L~l~  163 (219)
                      ++|++++|.+...+ +..+..+++|++|+++ +...+. ..   .....+++|+.|++.
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL-NDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS-TTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch-HHHHHHHHHHCCCcccccCC
Confidence            77777777776532 3556677777777776 333221 11   112345666666553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.11  E-value=1.4e-10  Score=93.18  Aligned_cols=189  Identities=16%  Similarity=0.084  Sum_probs=105.0

Q ss_pred             cccCCcccccccccccccccc-ChHhHH-HHhcccccceeeeeeCCCChhHHH-HHHhccCCCCe-EEEEecCCCccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLK-ELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLES-LTVLMASKDEILDL   77 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~-L~l~~~~~~~~~~~   77 (219)
                      ++||.++.  +++++|++.++ ...+++ .++++++|++|+++. +...+.+. ..+.++++++. +.+.+|..... +.
T Consensus        22 t~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~   97 (350)
T 4ay9_X           22 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ-NDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NP   97 (350)
T ss_dssp             CSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEEC-CTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CT
T ss_pred             CccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcC-CCCCCccChhHhhcchhhhhhhcccCCccccc-Cc
Confidence            45666653  46777777766 444544 367777777777773 21112111 22456666554 33444433332 22


Q ss_pred             ccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeee-cCCCCCCccccCC-Cccceeeec-cccCCceEEEccC
Q 042636           78 QSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLS-GLTEDPLRVPHAL-PNLLELRLG-GTYNYKLFHFEAG  152 (219)
Q Consensus        78 ~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~-~~~~~~~~~l~~l-~~L~~L~l~-~~~~~~~~~~~~~  152 (219)
                      ..+...+ +|++|++++ .++.+|.. .....++..+++.++ .+...+...+..+ ..++.|+++ +..  ..+.....
T Consensus        98 ~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i--~~i~~~~f  174 (350)
T 4ay9_X           98 EAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI--QEIHNSAF  174 (350)
T ss_dssp             TSBCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC--CEECTTSS
T ss_pred             hhhhhcc-ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc--cCCChhhc
Confidence            3344445 777777776 56555432 233445666666543 3443333344444 357777776 333  22322222


Q ss_pred             CCcccceeeecccCCcceEEEc-CCcccccceeeeecCCCCCcchhH
Q 042636          153 WFPKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFPLWSMYIFL  198 (219)
Q Consensus       153 ~~~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~l~~~~~~  198 (219)
                      ...+|+++.+.+++.++.++.. .+.+++|+.|+++++ ++..+|.+
T Consensus       175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~  220 (350)
T 4ay9_X          175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY  220 (350)
T ss_dssp             TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS
T ss_pred             cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh
Confidence            3467888888766667766543 256789999999986 57777653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.06  E-value=1.8e-11  Score=104.61  Aligned_cols=54  Identities=22%  Similarity=0.149  Sum_probs=35.5

Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCC-ccccCCCccceeeec
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPL-RVPHALPNLLELRLG  139 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~  139 (219)
                      +|+.+.+.. ....+|..+..+++|++|++++|.+..... ..+..+++|+.|++.
T Consensus       271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            666666655 333456666777888888888887554332 234677888888775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.06  E-value=2.6e-11  Score=100.90  Aligned_cols=163  Identities=14%  Similarity=0.060  Sum_probs=85.4

Q ss_pred             CCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccC-------------CCCeEEEEecC
Q 042636            5 HRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLE-------------NLESLTVLMAS   70 (219)
Q Consensus         5 P~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-------------~L~~L~l~~~~   70 (219)
                      |+.+ +.++|++|++.++ .+.+|++++++++|++|+++. +...+.++..+++++             ++++|+++++.
T Consensus         5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~   82 (454)
T 1jl5_A            5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAW-SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG   82 (454)
T ss_dssp             ------------------------------CCHHHHHHHH-HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred             cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccC-CcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence            5555 4689999998877 788999999999999999985 222223333334333             46999998876


Q ss_pred             CCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEE
Q 042636           71 KDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFH  148 (219)
Q Consensus        71 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~  148 (219)
                      ....   +.   .+.+|++|++++ .++.+|..   +++|+.|++++|.+.+.+.    ..++|++|+++ +...+  ++
T Consensus        83 l~~l---p~---~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~--lp  147 (454)
T 1jl5_A           83 LSSL---PE---LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK--LP  147 (454)
T ss_dssp             CSCC---CS---CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS--CC
T ss_pred             cccC---CC---CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCC--Cc
Confidence            5432   22   224999999998 77778743   4899999999998876421    12799999998 44432  33


Q ss_pred             EccCCCcccceeeecccCCcceEEEcCCcccccceeeeecC
Q 042636          149 FEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPF  189 (219)
Q Consensus       149 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~  189 (219)
                       ..+.+++|++|++.++. ++.++   ..+++|+.|++.++
T Consensus       148 -~~~~l~~L~~L~l~~N~-l~~lp---~~~~~L~~L~L~~n  183 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNS-LKKLP---DLPPSLEFIAAGNN  183 (454)
T ss_dssp             -CCTTCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSS
T ss_pred             -ccCCCCCCCEEECCCCc-CcccC---CCcccccEEECcCC
Confidence             35567778888877643 33321   12345555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.06  E-value=3.2e-11  Score=103.12  Aligned_cols=63  Identities=16%  Similarity=0.134  Sum_probs=39.7

Q ss_pred             cCCcccccccccccccccc--ChHhH-HHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEE
Q 042636            4 VHRGLGSLMDLQKLSIIEA--DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVL   67 (219)
Q Consensus         4 lP~~l~~l~~L~~L~~~~~--~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~   67 (219)
                      +|..+..+++|++|++.++  ..... ..++++++|++|++.. ......+......+++|++|+++
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEee
Confidence            4555677888999988877  33333 4467788888888772 22222333334556777777777

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.05  E-value=3.1e-10  Score=91.53  Aligned_cols=150  Identities=20%  Similarity=0.196  Sum_probs=91.7

Q ss_pred             cccceeeeeeCCCChhHH-HHHHh-ccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCCh-hhhcCCCc
Q 042636           34 RQLRKLGIRPKNGNGKDV-CALIA-NLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNV  109 (219)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~-~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L  109 (219)
                      +.++.|+++.  +....+ ...+. ++++|+.|++++|......+ ..+..++ +|++|++++ .++.++. .+..+++|
T Consensus        39 ~~l~~L~Ls~--N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L  114 (361)
T 2xot_A           39 SYTALLDLSH--NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVP-NLRYLDLSSNHLHTLDEFLFSDLQAL  114 (361)
T ss_dssp             TTCSEEECCS--SCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCCCEEECCC--CCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCC-CCCEEECCCCcCCcCCHHHhCCCcCC
Confidence            3577788873  222222 22234 77888888888876644322 3455555 888888887 6666543 46678888


Q ss_pred             cEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEcc----CCCcccceeeecccCCcceEEEc-CCcccc--c
Q 042636          110 IRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEA----GWFPKLQILTLFDFVAVKSVIIE-KGAMPD--I  181 (219)
Q Consensus       110 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~-~~~~p~--L  181 (219)
                      +.|++++|.+...+...+..+++|+.|+++ +....  +....    ..+++|+.|++.++. +..++.. ...++.  +
T Consensus       115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l  191 (361)
T 2xot_A          115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVK  191 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHH
T ss_pred             CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhc
Confidence            888888888876656677788888888887 43322  21111    346788888887643 4443321 122444  3


Q ss_pred             ceeeeecCC
Q 042636          182 RELGIGPFP  190 (219)
Q Consensus       182 ~~L~l~~~~  190 (219)
                      +.|++.+++
T Consensus       192 ~~l~l~~N~  200 (361)
T 2xot_A          192 NGLYLHNNP  200 (361)
T ss_dssp             TTEECCSSC
T ss_pred             ceEEecCCC
Confidence            667777755

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.04  E-value=7.2e-11  Score=101.37  Aligned_cols=179  Identities=17%  Similarity=0.168  Sum_probs=97.9

Q ss_pred             cccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChh-HHHHHHhccCCCCeEEEEecCCCcccccccCCCcc
Q 042636            7 GLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGK-DVCALIANLENLESLTVLMASKDEILDLQSLSSPP   84 (219)
Q Consensus         7 ~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   84 (219)
                      ....+.+|++++...+ ....+..+..+++|+.+++.. ..... .-...+.++.+++.++++.+......+ ..+...+
T Consensus       392 ~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~-~~~~~~~  469 (635)
T 4g8a_A          392 SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLS  469 (635)
T ss_dssp             HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTT-SEEESTTSSCTTTTCTTCCEEECTTSCCEECCT-TTTTTCT
T ss_pred             chhhhhhhhhhhccccccccccccccccccccchhhhh-ccccccccccccccccccccccccccccccccc-cccccch
Confidence            3445667777776555 222333455677777776653 11000 011224556777777776654433222 2233333


Q ss_pred             cCccEEEecc-c-CCC-CChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCccccee
Q 042636           85 QYLQRLYLTG-N-MKK-LPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQIL  160 (219)
Q Consensus        85 ~~L~~L~l~~-~-~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L  160 (219)
                       +++.|++++ . ... .|..+..+++|+.|++++|++...+...+.++++|+.|+++ +...+ ........+++|+.|
T Consensus       470 -~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L  547 (635)
T 4g8a_A          470 -SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVL  547 (635)
T ss_dssp             -TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB-CCCGGGTTCTTCCEE
T ss_pred             -hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC-CChhHHhCCCCCCEE
Confidence             777777765 2 222 45556667777777777777766555667777777777776 33321 112233456777777


Q ss_pred             eecccCCcceEEE-cCCcc-cccceeeeecCC
Q 042636          161 TLFDFVAVKSVII-EKGAM-PDIRELGIGPFP  190 (219)
Q Consensus       161 ~l~~~~~~~~~~~-~~~~~-p~L~~L~l~~~~  190 (219)
                      ++.++. +..+.. ....+ ++|+.|++.+++
T Consensus       548 ~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          548 DYSLNH-IMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             ECTTSC-CCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             ECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            777543 333221 12233 467777776644

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.03  E-value=8.5e-13  Score=109.56  Aligned_cols=111  Identities=19%  Similarity=0.257  Sum_probs=55.1

Q ss_pred             ccccccccccccccc--ChHhHHHHh-----cccccceeeeeeCCCC----hhHHHHHHhccCCCCeEEEEecCCCcccc
Q 042636            8 LGSLMDLQKLSIIEA--DSQVLKELM-----KLRQLRKLGIRPKNGN----GKDVCALIANLENLESLTVLMASKDEILD   76 (219)
Q Consensus         8 l~~l~~L~~L~~~~~--~~~~~~~l~-----~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~   76 (219)
                      +.++++|++|++.++  ....+..+.     ..++|++|+++. +..    ...++..+.++++|++|++++|.......
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES-CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT-SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC-CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            444556666665555  122222221     234666666653 111    12345556666777777777664422110


Q ss_pred             --c-ccCC-CcccCccEEEecc-cCCC-----CChhhhcCCCccEEEEeeecCC
Q 042636           77 --L-QSLS-SPPQYLQRLYLTG-NMKK-----LPDWIFKLKNVIRLGLDLSGLT  120 (219)
Q Consensus        77 --~-~~~~-~~~~~L~~L~l~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~  120 (219)
                        + +.+. ..+ +|++|++++ .++.     ++..+..+++|++|++++|.+.
T Consensus       245 ~~l~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          245 AELCPGLLHPSS-RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             HHHHHHHhcCCC-CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence              0 1111 123 677777765 4443     4445555666777777666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.01  E-value=1.5e-11  Score=99.37  Aligned_cols=133  Identities=15%  Similarity=0.208  Sum_probs=72.7

Q ss_pred             cccccc-cccccccccc--ChHhHHHHhcc-----cccceeeeee---CCCChhHHHHHHhcc-CCCCeEEEEecCCCcc
Q 042636            7 GLGSLM-DLQKLSIIEA--DSQVLKELMKL-----RQLRKLGIRP---KNGNGKDVCALIANL-ENLESLTVLMASKDEI   74 (219)
Q Consensus         7 ~l~~l~-~L~~L~~~~~--~~~~~~~l~~l-----~~L~~L~l~~---~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~   74 (219)
                      .+.+++ +|++|++.++  ....+..+..+     ++|++|+++.   .......+...+..+ ++|++|++++|.....
T Consensus        45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            355566 7888888777  33334444443     7888888875   112233444455555 7788888887765332


Q ss_pred             cc--c-ccCCCcccCccEEEecc-cCCC-----CChhhhcCC-CccEEEEeeecCCCCCCc----cccCC-Cccceeeec
Q 042636           75 LD--L-QSLSSPPQYLQRLYLTG-NMKK-----LPDWIFKLK-NVIRLGLDLSGLTEDPLR----VPHAL-PNLLELRLG  139 (219)
Q Consensus        75 ~~--~-~~~~~~~~~L~~L~l~~-~~~~-----l~~~~~~l~-~L~~L~l~~~~~~~~~~~----~l~~l-~~L~~L~l~  139 (219)
                      ..  + ..+...+.+|++|++++ .++.     ++..+...+ +|++|++++|.+......    .+... ++|+.|+++
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls  204 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS  204 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence            21  1 11222123777777776 4442     233334444 677777777766544322    22334 366666666

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.99  E-value=8.9e-11  Score=82.69  Aligned_cols=124  Identities=22%  Similarity=0.168  Sum_probs=94.7

Q ss_pred             cccccccccccc-C--hHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636           11 LMDLQKLSIIEA-D--SQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL   87 (219)
Q Consensus        11 l~~L~~L~~~~~-~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L   87 (219)
                      ..++++|++.++ .  ..++..++.+++|+.|+++.  +....+ ..++++++|++|++++|......+ ..+...+ +|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~--n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~-~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN--VGLTSI-ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCP-NL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTT--SCCCCC-TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCT-TC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcC--CCCCCc-hhhhcCCCCCEEECCCCcccchHH-HHhhhCC-CC
Confidence            468889998887 3  36777778999999999984  222222 667889999999999987765332 1222244 89


Q ss_pred             cEEEecc-cCCCCC--hhhhcCCCccEEEEeeecCCCCCC---ccccCCCccceeeec
Q 042636           88 QRLYLTG-NMKKLP--DWIFKLKNVIRLGLDLSGLTEDPL---RVPHALPNLLELRLG  139 (219)
Q Consensus        88 ~~L~l~~-~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~  139 (219)
                      ++|++++ .++.++  ..+..+++|++|++++|.+...+.   ..+..+++|+.|+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            9999998 777754  678889999999999999887654   467889999999874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.98  E-value=7.4e-12  Score=103.91  Aligned_cols=133  Identities=22%  Similarity=0.204  Sum_probs=63.5

Q ss_pred             CCcccccccccccccccc--ChHhHHHHh-----cccccceeeeeeCCCC----hhHHHHHHhccCCCCeEEEEecCCCc
Q 042636            5 HRGLGSLMDLQKLSIIEA--DSQVLKELM-----KLRQLRKLGIRPKNGN----GKDVCALIANLENLESLTVLMASKDE   73 (219)
Q Consensus         5 P~~l~~l~~L~~L~~~~~--~~~~~~~l~-----~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~   73 (219)
                      |..+.++++|++|++.++  ....+..+.     ..++|++|+++. +..    ...+...+.++++|++|++++|....
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY-CSLSAASCEPLASVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCC-CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence            444555555566555554  122222221     133455555553 111    12344555566677777776654322


Q ss_pred             ccc--c-ccCC-CcccCccEEEecc-cCCC-----CChhhhcCCCccEEEEeeecCCCCCC-----ccccCCCccceeee
Q 042636           74 ILD--L-QSLS-SPPQYLQRLYLTG-NMKK-----LPDWIFKLKNVIRLGLDLSGLTEDPL-----RVPHALPNLLELRL  138 (219)
Q Consensus        74 ~~~--~-~~~~-~~~~~L~~L~l~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~l~~l~~L~~L~l  138 (219)
                      ...  + ..+. ..+ +|++|++++ .++.     ++.++..+++|++|++++|.+.....     .....+++|++|++
T Consensus       185 ~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L  263 (461)
T 1z7x_W          185 AGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  263 (461)
T ss_dssp             HHHHHHHHHHHHSCC-CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             HHHHHHHHHHhcCCC-CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence            111  0 1111 122 677777765 4443     34455566777777777666543221     11224566666666


Q ss_pred             c
Q 042636          139 G  139 (219)
Q Consensus       139 ~  139 (219)
                      +
T Consensus       264 ~  264 (461)
T 1z7x_W          264 W  264 (461)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.98  E-value=1.2e-12  Score=96.89  Aligned_cols=123  Identities=19%  Similarity=0.156  Sum_probs=88.3

Q ss_pred             ccccccccccccc--------ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCC
Q 042636           10 SLMDLQKLSIIEA--------DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLS   81 (219)
Q Consensus        10 ~l~~L~~L~~~~~--------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~   81 (219)
                      +..+++.+++..+        ...++..++++++|++|+++.  +....++ .+.++++|+.|++++|......  ..+.
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~--n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~--~~~~   90 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALST--NNIEKIS-SLSGMENLRILSLGRNLIKKIE--NLDA   90 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSE--EEESCCC-CHHHHTTCCEEEEEEEEECSCS--SHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCC--CCCcccc-ccccCCCCCEEECCCCCccccc--chhh
Confidence            3445555555444        233455899999999999986  1112222 5678899999999998665321  1122


Q ss_pred             CcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec
Q 042636           82 SPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG  139 (219)
Q Consensus        82 ~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~  139 (219)
                      .++ +|+.|++++ .++.+| .+..+++|+.|++++|.+...+ ...+..+++|++|+++
T Consensus        91 ~~~-~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A           91 VAD-TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             HHH-HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred             cCC-cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence            234 899999998 777776 6778899999999999988643 2467889999999998

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.97  E-value=1.4e-10  Score=99.17  Aligned_cols=69  Identities=10%  Similarity=0.029  Sum_probs=38.8

Q ss_pred             CCccceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEE--cCCcccccceeeeecCCCCCcchhHHhhh
Q 042636          130 LPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVII--EKGAMPDIRELGIGPFPLWSMYIFLTDHI  202 (219)
Q Consensus       130 l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~p~L~~L~l~~~~~l~~~~~~~~~l  202 (219)
                      +++|+.|+++ +...+..+.....++++|+.|++.+|.. ++...  ....+|+|+.|++.+|+.   .+.|+..+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~---~~~~~~~l  526 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV---SFGACKLL  526 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC---BHHHHHHH
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC---CHHHHHHH
Confidence            5666666665 2222111111113468888888887764 32211  123478899999999875   34555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.96  E-value=1.9e-09  Score=79.30  Aligned_cols=103  Identities=18%  Similarity=0.225  Sum_probs=63.9

Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF  163 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~  163 (219)
                      ++++|++++ .++.+|..+..+++|+.|++++|.+...+...+..+++|+.|+++ +... .........+++|+.|++.
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECC
Confidence            677777776 666677677777777777777777776655667777777777776 3322 1111123456677777777


Q ss_pred             ccCCcceEEEc-CCcccccceeeeecCC
Q 042636          164 DFVAVKSVIIE-KGAMPDIRELGIGPFP  190 (219)
Q Consensus       164 ~~~~~~~~~~~-~~~~p~L~~L~l~~~~  190 (219)
                      ++. +..++.. ...+++|+.|++.+++
T Consensus       111 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          111 GND-ISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             SSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCC-CCeeChhhhhcCccccEEEeCCCC
Confidence            543 4433321 2346777777777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.94  E-value=1.8e-09  Score=79.31  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=49.8

Q ss_pred             CccEEEecc-cCCCCCh--hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceee
Q 042636           86 YLQRLYLTG-NMKKLPD--WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILT  161 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~  161 (219)
                      ++++|++++ .++.++.  .+..+++|++|++++|.+.......+..+++|+.|+++ +... .........+++|+.|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC-ccCHHHhcCCCCCCEEE
Confidence            555555555 4444443  24555566666666665555444455556666666665 2221 11111123445566666


Q ss_pred             ecccCCcceE-EEcCCcccccceeeeecCC
Q 042636          162 LFDFVAVKSV-IIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       162 l~~~~~~~~~-~~~~~~~p~L~~L~l~~~~  190 (219)
                      +.++. +..+ +...+.+++|+.|++.+++
T Consensus       109 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          109 LYDNQ-ISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence            65433 3322 1122345566666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.94  E-value=4.7e-10  Score=82.53  Aligned_cols=119  Identities=14%  Similarity=0.146  Sum_probs=62.1

Q ss_pred             cccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHH--HHhccCCCCeEEEEecCCCcccccccCCCcccCccEEE
Q 042636           15 QKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCA--LIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLY   91 (219)
Q Consensus        15 ~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~   91 (219)
                      +++++.++ ...+|..+.  .+++.|+++.  +....+..  .+.++++|++|++++|......+ ..+..++ +|++|+
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~--n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLND--NELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGAS-HIQELQ   84 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCS--CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCT-TCCEEE
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCC--CcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCCcc-cCCEEE
Confidence            34444443 333443322  2666666663  22222221  24566666777766665543322 2334444 666666


Q ss_pred             ecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           92 LTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        92 l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      +++ .++.++ ..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            665 555433 234556666666666666665444555666666666665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.94  E-value=8.4e-12  Score=92.33  Aligned_cols=152  Identities=16%  Similarity=0.074  Sum_probs=104.7

Q ss_pred             HHHHhcccccceeeeee-----CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC
Q 042636           27 LKELMKLRQLRKLGIRP-----KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP  100 (219)
Q Consensus        27 ~~~l~~l~~L~~L~l~~-----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~  100 (219)
                      .+.+....+++.+++..     .......++..+.++++|++|++++|.....   +.+...+ +|+.|++++ .++.+|
T Consensus        11 ~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l---~~~~~l~-~L~~L~l~~n~l~~l~   86 (198)
T 1ds9_A           11 IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI---SSLSGME-NLRILSLGRNLIKKIE   86 (198)
T ss_dssp             HHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC---CCHHHHT-TCCEEEEEEEEECSCS
T ss_pred             HHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc---cccccCC-CCCEEECCCCCccccc
Confidence            34455666666666654     1223344555788999999999998866542   3555555 999999998 788888


Q ss_pred             hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEc-----
Q 042636          101 DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIE-----  174 (219)
Q Consensus       101 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----  174 (219)
                      ..+..+++|+.|++++|.+...  ..+..+++|+.|+++ +....-........+++|+.|++.+++ +......     
T Consensus        87 ~~~~~~~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~  163 (198)
T 1ds9_A           87 NLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATS  163 (198)
T ss_dssp             SHHHHHHHCSEEEEEEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHH
T ss_pred             chhhcCCcCCEEECcCCcCCcC--CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchH
Confidence            8888889999999999998874  357789999999998 444321111134568899999998764 3221110     


Q ss_pred             ------CCcccccceee
Q 042636          175 ------KGAMPDIRELG  185 (219)
Q Consensus       175 ------~~~~p~L~~L~  185 (219)
                            ...+|+|+.|+
T Consensus       164 ~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          164 EYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHHCSSCSEEC
T ss_pred             HHHHHHHHhCCCcEEEC
Confidence                  23478888776

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.92  E-value=6.3e-11  Score=85.92  Aligned_cols=127  Identities=13%  Similarity=0.091  Sum_probs=79.2

Q ss_pred             hcccccceeeeeeCCCChhHHHHHHhccC-CCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhh-hcCC
Q 042636           31 MKLRQLRKLGIRPKNGNGKDVCALIANLE-NLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWI-FKLK  107 (219)
Q Consensus        31 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~-~~l~  107 (219)
                      .++.+|+.|++++  +....+ ..+..+. +|++|++++|.....   +.+...+ +|++|++++ .++.+|..+ ..++
T Consensus        16 ~~~~~L~~L~l~~--n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           16 TNAVRDRELDLRG--YKIPVI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLR-RLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             ECTTSCEEEECTT--SCCCSC-CCGGGGTTCCSEEECCSSCCCEE---CCCCCCS-SCCEEECCSSCCCEECSCHHHHCT
T ss_pred             CCcCCceEEEeeC--CCCchh-HHhhhcCCCCCEEECCCCCCCcc---cccccCC-CCCEEECCCCcccccCcchhhcCC
Confidence            4566777777773  122222 2244444 788888888765543   4455555 888888887 666666443 7788


Q ss_pred             CccEEEEeeecCCCCC-CccccCCCccceeeec-cccCCceEEE----ccCCCcccceeeecccC
Q 042636          108 NVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNYKLFHF----EAGWFPKLQILTLFDFV  166 (219)
Q Consensus       108 ~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~~----~~~~~~~L~~L~l~~~~  166 (219)
                      +|+.|++++|.+...+ ...+..+++|+.|+++ +....  ++.    ....+++|+.|++.++.
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccceeCCCcCC
Confidence            8888888888876543 2356778888888887 43321  111    13356778888776543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.92  E-value=1.1e-10  Score=84.56  Aligned_cols=128  Identities=17%  Similarity=0.132  Sum_probs=91.0

Q ss_pred             hccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccc
Q 042636           56 ANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLL  134 (219)
Q Consensus        56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  134 (219)
                      .++.+|++|++++|.....   +.+.....+|+.|++++ .++.+ ..+..+++|+.|++++|.+...+...+..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            4567899999998876543   33333333899999998 77766 4677889999999999998876545568899999


Q ss_pred             eeeec-cccCCceEEE--ccCCCcccceeeecccCCcceEEEc----CCcccccceeeeecCC
Q 042636          135 ELRLG-GTYNYKLFHF--EAGWFPKLQILTLFDFVAVKSVIIE----KGAMPDIRELGIGPFP  190 (219)
Q Consensus       135 ~L~l~-~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~p~L~~L~l~~~~  190 (219)
                      .|+++ +....  ++.  ....+++|+.|++.+++ +..++..    .+.+|+|+.|++.+++
T Consensus        92 ~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           92 ELILTNNSLVE--LGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEECCCCcCCc--chhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99998 44422  221  33467889999998765 3333221    3357899999988875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.91  E-value=1e-09  Score=93.61  Aligned_cols=161  Identities=14%  Similarity=0.026  Sum_probs=103.0

Q ss_pred             cccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEE
Q 042636           13 DLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLY   91 (219)
Q Consensus        13 ~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~   91 (219)
                      ++++|++.++ ...+|..+  +++|++|+++.  +....++   ..+++|+.|++++|.....   +.+.   .+|++|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~--N~l~~ip---~~l~~L~~L~Ls~N~l~~i---p~l~---~~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQ--NALISLP---ELPASLEYLDACDNRLSTL---PELP---ASLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCS--SCCSCCC---CCCTTCCEEECCSSCCSCC---CCCC---TTCCEEE
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcC--CCCcccc---cccCCCCEEEccCCCCCCc---chhh---cCCCEEE
Confidence            6777777766 33355444  36788888874  2222333   4467888888888766442   2222   2788888


Q ss_pred             ecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcc
Q 042636           92 LTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVK  169 (219)
Q Consensus        92 l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  169 (219)
                      +++ .++.+|.   .+++|+.|++++|.+...+.    .+++|+.|+++ +...+  ++. ..  ++|+.|++.++. ++
T Consensus       127 Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~-L~  193 (571)
T 3cvr_A          127 VDNNQLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL-LE  193 (571)
T ss_dssp             CCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CS
T ss_pred             CCCCcCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC-CC
Confidence            887 6777776   57888888888888876432    56888888888 44332  222 21  788899888653 55


Q ss_pred             eEEEcCCccccc-------ceeeeecCCCCCcchhHHhhhh
Q 042636          170 SVIIEKGAMPDI-------RELGIGPFPLWSMYIFLTDHIL  203 (219)
Q Consensus       170 ~~~~~~~~~p~L-------~~L~l~~~~~l~~~~~~~~~l~  203 (219)
                      .++. ..  ++|       +.|++.+| .+..+|.++..+.
T Consensus       194 ~lp~-~~--~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~  230 (571)
T 3cvr_A          194 SLPA-VP--VRNHHSEETEIFFRCREN-RITHIPENILSLD  230 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSC
T ss_pred             chhh-HH--HhhhcccccceEEecCCC-cceecCHHHhcCC
Confidence            4433 21  256       88899886 5667777666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.88  E-value=8.5e-10  Score=96.79  Aligned_cols=105  Identities=17%  Similarity=0.027  Sum_probs=50.8

Q ss_pred             HHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCC
Q 042636           29 ELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLK  107 (219)
Q Consensus        29 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~  107 (219)
                      .+..+++|+.|+++.  +....++..+.++++|++|++++|..... + ..+..++ +|+.|++++ .++.+|..+..+.
T Consensus       219 ~~~~l~~L~~L~Ls~--n~l~~l~~~~~~l~~L~~L~Ls~N~l~~l-p-~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~  293 (727)
T 4b8c_D          219 SKYDDQLWHALDLSN--LQIFNISANIFKYDFLTRLYLNGNSLTEL-P-AEIKNLS-NLRVLDLSHNRLTSLPAELGSCF  293 (727)
T ss_dssp             ---CCCCCCEEECTT--SCCSCCCGGGGGCCSCSCCBCTTSCCSCC-C-GGGGGGT-TCCEEECTTSCCSSCCSSGGGGT
T ss_pred             hhccCCCCcEEECCC--CCCCCCChhhcCCCCCCEEEeeCCcCccc-C-hhhhCCC-CCCEEeCcCCcCCccChhhcCCC
Confidence            344555555555552  22223333344555555665555544321 1 2233333 555556555 4555555555555


Q ss_pred             CccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636          108 NVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      +|++|++++|.+...+ ..++.+++|+.|+++
T Consensus       294 ~L~~L~L~~N~l~~lp-~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLP-WEFGNLCNLQFLGVE  324 (727)
T ss_dssp             TCSEEECCSSCCCCCC-SSTTSCTTCCCEECT
T ss_pred             CCCEEECCCCCCCccC-hhhhcCCCccEEeCC
Confidence            5666666555554332 235555556655555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.86  E-value=2.6e-09  Score=93.72  Aligned_cols=102  Identities=27%  Similarity=0.298  Sum_probs=51.7

Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF  163 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~  163 (219)
                      +|+.|++++ .+..+|..+..+++|++|+|++|.+... +..+..+++|+.|+|+ +.+.  .++...+.+++|+.|++.
T Consensus       225 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFF  301 (727)
T ss_dssp             CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECC
T ss_pred             CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECC
Confidence            555555555 4445555555555556666655555532 2344555555555555 3222  222223345555555555


Q ss_pred             ccCCcceEEEcCCcccccceeeeecCCC
Q 042636          164 DFVAVKSVIIEKGAMPDIRELGIGPFPL  191 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~  191 (219)
                      ++. ++.++...+.+++|+.|++.+++-
T Consensus       302 ~N~-l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          302 DNM-VTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CCC-CCccChhhhcCCCccEEeCCCCcc
Confidence            432 344443344556666666666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.86  E-value=3e-09  Score=78.29  Aligned_cols=118  Identities=19%  Similarity=0.154  Sum_probs=77.0

Q ss_pred             ccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc
Q 042636           16 KLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG   94 (219)
Q Consensus        16 ~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~   94 (219)
                      +++..++ ...+|..+  .++|++|+++.  +....++..+.++++|+.|++++|......+ ..+..++ +|++|++++
T Consensus        14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~--n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~-~L~~L~Ls~   87 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGI--PRDVTELYLDG--NQFTLVPKELSNYKHLTLIDLSNNRISTLSN-QSFSNMT-QLLTLILSY   87 (193)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCCEEECCS--SCCCSCCGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCT-TCCEEECCS
T ss_pred             EEEcCCCCCCcCCCCC--CCCCCEEECCC--CcCchhHHHhhcccCCCEEECCCCcCCEeCH-hHccCCC-CCCEEECCC
Confidence            3444433 33444332  25777887773  2233444567778888888888876654322 3455555 888888887


Q ss_pred             -cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           95 -NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        95 -~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                       .++.++. .+..+++|+.|++++|.+...+...+..+++|+.|+++
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence             6666553 46777888888888888877666667778888888886

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.75  E-value=2.7e-08  Score=71.88  Aligned_cols=103  Identities=22%  Similarity=0.181  Sum_probs=61.2

Q ss_pred             CccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeee
Q 042636           86 YLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTL  162 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l  162 (219)
                      ++++|++++ .++.++.. +..+++|++|++++|.+...+...+..+++|+.|+++ +.... ........+++|+.|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCHHHhhCCcccCEEEC
Confidence            677777766 55555543 4566777777777777766555556677777777776 33321 11111234567777777


Q ss_pred             cccCCcceEEEcC-CcccccceeeeecCC
Q 042636          163 FDFVAVKSVIIEK-GAMPDIRELGIGPFP  190 (219)
Q Consensus       163 ~~~~~~~~~~~~~-~~~p~L~~L~l~~~~  190 (219)
                      .++. +..++... ..+++|+.|++.+++
T Consensus       108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence            7543 44433222 346777777777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.73  E-value=3.8e-08  Score=71.10  Aligned_cols=82  Identities=24%  Similarity=0.314  Sum_probs=34.8

Q ss_pred             hccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636           56 ANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNL  133 (219)
Q Consensus        56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  133 (219)
                      .++++|++|++++|......+ ..+...+ +|++|++++ .++.+|.. +..+++|+.|++++|.+...+...+..+++|
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  126 (177)
T 2o6r_A           49 DKLTQLTKLSLSQNQIQSLPD-GVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL  126 (177)
T ss_dssp             TTCTTCSEEECCSSCCCCCCT-TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCcccccEEECCCCcceEeCh-hHccCCC-ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence            444555555555443322111 1122233 455555544 34443322 2344455555555554444333334444455


Q ss_pred             ceeeec
Q 042636          134 LELRLG  139 (219)
Q Consensus       134 ~~L~l~  139 (219)
                      +.|+++
T Consensus       127 ~~L~l~  132 (177)
T 2o6r_A          127 QKIWLH  132 (177)
T ss_dssp             CEEECC
T ss_pred             CEEEec
Confidence            555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.72  E-value=7.6e-10  Score=94.54  Aligned_cols=179  Identities=21%  Similarity=0.208  Sum_probs=98.8

Q ss_pred             cccccccccccccc--ChH-hHHHHhcccccceeeeeeCCCChhHHHH-HHhccCCCCeEEEEec--------CCCcccc
Q 042636            9 GSLMDLQKLSIIEA--DSQ-VLKELMKLRQLRKLGIRPKNGNGKDVCA-LIANLENLESLTVLMA--------SKDEILD   76 (219)
Q Consensus         9 ~~l~~L~~L~~~~~--~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~--------~~~~~~~   76 (219)
                      .++++|++|++.++  ... +..-+.++++|++|++.. + ....... ....+++|+.|+++++        .......
T Consensus       286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~-~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~  363 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD-Y-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG  363 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG-G-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred             HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC-c-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence            35677788877766  332 233356788888888873 2 2222233 3335788888888542        1111111


Q ss_pred             cccCC-CcccCccEEEecc-cCCC-CChhh-hcCCCccEEEEee------ecCCCCCC-----ccccCCCccceeeeccc
Q 042636           77 LQSLS-SPPQYLQRLYLTG-NMKK-LPDWI-FKLKNVIRLGLDL------SGLTEDPL-----RVPHALPNLLELRLGGT  141 (219)
Q Consensus        77 ~~~~~-~~~~~L~~L~l~~-~~~~-l~~~~-~~l~~L~~L~l~~------~~~~~~~~-----~~l~~l~~L~~L~l~~~  141 (219)
                      +..+. ..+ +|++|.+.. .++. .+..+ ..+++|+.|+++.      +.+...+.     ..+..+++|+.|++++.
T Consensus       364 l~~l~~~~~-~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~  442 (594)
T 2p1m_B          364 LVSVSMGCP-KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL  442 (594)
T ss_dssp             HHHHHHHCT-TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHhch-hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc
Confidence            11111 133 788886654 4433 11222 3578899999982      33332211     12456788999988542


Q ss_pred             cCCceEEEccCCCcccceeeecccCCcceEEE--cCCcccccceeeeecCCC
Q 042636          142 YNYKLFHFEAGWFPKLQILTLFDFVAVKSVII--EKGAMPDIRELGIGPFPL  191 (219)
Q Consensus       142 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~p~L~~L~l~~~~~  191 (219)
                      .....+......+++|+.|++.++. +.+...  -...+|+|+.|++.+|+.
T Consensus       443 l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          443 LTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             ccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            2111111111236789999998765 322111  113479999999999975

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.64  E-value=1.3e-07  Score=68.24  Aligned_cols=54  Identities=33%  Similarity=0.387  Sum_probs=33.0

Q ss_pred             CccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           86 YLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      ++++|++++ .++.+ |..+..+++|+.|++++|.+...+...+..+++|+.|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            666666665 55554 3445566666666666666665544455666666666665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.57  E-value=5.1e-08  Score=70.46  Aligned_cols=79  Identities=19%  Similarity=0.200  Sum_probs=54.4

Q ss_pred             CCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636           59 ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL  136 (219)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  136 (219)
                      ++|++|++++|......+ ..+..++ +|++|++++ .++.+|.. +..+++|+.|++++|.+...+...+..+++|+.|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEP-GVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             TTCSEEECCSSCCCCCCT-TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEEeCCCCccccCH-HHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence            567777777766544322 3344455 788888877 66666654 3677888888888888777655567778888888


Q ss_pred             eec
Q 042636          137 RLG  139 (219)
Q Consensus       137 ~l~  139 (219)
                      +++
T Consensus       111 ~L~  113 (174)
T 2r9u_A          111 YLY  113 (174)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.55  E-value=1.2e-07  Score=68.24  Aligned_cols=99  Identities=24%  Similarity=0.238  Sum_probs=58.5

Q ss_pred             CCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeee
Q 042636           61 LESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRL  138 (219)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  138 (219)
                      .+.++++++......  ..+   +.++++|++++ .++.+ |..+..+++|++|++++|.+...+...+..+++|+.|++
T Consensus        11 ~~~l~~s~n~l~~ip--~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGKSLASVP--TGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTSCCSSCC--SCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCccC--ccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            356666655443321  111   13777777776 66665 445667777788888777777665556677777777777


Q ss_pred             c-cccCCceEEE-ccCCCcccceeeecccC
Q 042636          139 G-GTYNYKLFHF-EAGWFPKLQILTLFDFV  166 (219)
Q Consensus       139 ~-~~~~~~~~~~-~~~~~~~L~~L~l~~~~  166 (219)
                      + +....  +.. ....+++|+.|++.+++
T Consensus        86 ~~N~l~~--~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           86 NDNQLKS--IPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCccCE--eCHHHhcCCCCCCEEEeCCCC
Confidence            6 33321  111 13345666666666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.45  E-value=5e-07  Score=64.85  Aligned_cols=79  Identities=20%  Similarity=0.180  Sum_probs=51.9

Q ss_pred             CCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636           59 ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL  136 (219)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  136 (219)
                      ++|++|++++|......+ ..+..++ +|++|++++ .++.+|.. +..+++|+.|++++|.+...+...+..+++|+.|
T Consensus        30 ~~l~~L~L~~N~i~~~~~-~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEP-GVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             TTCSEEECCSSCCCCCCT-TTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCcCCccCh-hhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence            567777777765544322 3344444 777777776 66666544 4667778888887777776655567777778777


Q ss_pred             eec
Q 042636          137 RLG  139 (219)
Q Consensus       137 ~l~  139 (219)
                      +++
T Consensus       108 ~L~  110 (170)
T 3g39_A          108 WLL  110 (170)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.35  E-value=9.5e-08  Score=68.82  Aligned_cols=98  Identities=8%  Similarity=-0.035  Sum_probs=66.9

Q ss_pred             CCccEEEEeeecCCCCCCccccCCCccceeeecccc--CCceEEEccC---CCcccceeeecccCCcceEEE-cCCcccc
Q 042636          107 KNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTY--NYKLFHFEAG---WFPKLQILTLFDFVAVKSVII-EKGAMPD  180 (219)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~-~~~~~p~  180 (219)
                      -.|+.|++++|.++...+..+..+++|+.|+++.|.  ....+.....   ..++|++|++.+|.++++-.+ ....+|+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468999999998877667777889999999998443  2221111111   135799999999887765221 1235899


Q ss_pred             cceeeeecCCCCCcchhHHhhhhh
Q 042636          181 IRELGIGPFPLWSMYIFLTDHILD  204 (219)
Q Consensus       181 L~~L~l~~~~~l~~~~~~~~~l~~  204 (219)
                      |+.|++++|+.+......+..+..
T Consensus       141 L~~L~L~~c~~Itd~gl~~~~L~~  164 (176)
T 3e4g_A          141 LKYLFLSDLPGVKEKEKIVQAFKT  164 (176)
T ss_dssp             CCEEEEESCTTCCCHHHHHHHHHH
T ss_pred             CCEEECCCCCCCCchHHHHHHHHH
Confidence            999999999988765544444433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.32  E-value=1e-08  Score=83.00  Aligned_cols=34  Identities=18%  Similarity=0.047  Sum_probs=17.3

Q ss_pred             CCCccEEEEeeecCCCCCCc----cccCCCccceeeec
Q 042636          106 LKNVIRLGLDLSGLTEDPLR----VPHALPNLLELRLG  139 (219)
Q Consensus       106 l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~  139 (219)
                      ..+|+.|++++|.+......    .+...++|++|+++
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls  191 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL  191 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC
Confidence            34566666666655432211    22345566666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.16  E-value=3.4e-06  Score=67.22  Aligned_cols=94  Identities=18%  Similarity=0.129  Sum_probs=56.2

Q ss_pred             hHhHHHHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCCh
Q 042636           24 SQVLKELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPD  101 (219)
Q Consensus        24 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~  101 (219)
                      ..+|. +..+++|+.|+++. .+....+. ..+.++++|+.|++++|......+ ..+..++ +|++|++++ .++.+|.
T Consensus        22 ~~ip~-l~~~~~L~~L~l~~-~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~-~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           22 DSLHH-LPGAENLTELYIEN-QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTP-RLSRLNLSFNALESLSW   97 (347)
T ss_dssp             TTTTT-SCSCSCCSEEECCS-CSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCS-CCCEEECCSSCCSCCCS
T ss_pred             CccCC-CCCCCCeeEEEccC-CCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCc-CCCEEeCCCCccceeCH
Confidence            34566 77777777777761 12222222 346677777777777776544322 2334444 777777776 6666665


Q ss_pred             hhhcCCCccEEEEeeecCCC
Q 042636          102 WIFKLKNVIRLGLDLSGLTE  121 (219)
Q Consensus       102 ~~~~l~~L~~L~l~~~~~~~  121 (219)
                      .......|+.|++.+|.+..
T Consensus        98 ~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           98 KTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             TTTCSCCCCEEECCSSCCCC
T ss_pred             HHcccCCceEEEeeCCCccC
Confidence            44333337777777776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.15  E-value=7.3e-07  Score=71.84  Aligned_cols=155  Identities=14%  Similarity=0.137  Sum_probs=69.9

Q ss_pred             Hhcccccceeeeee-CCC---C----hhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC-C
Q 042636           30 LMKLRQLRKLGIRP-KNG---N----GKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-L   99 (219)
Q Consensus        30 l~~l~~L~~L~l~~-~~~---~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l   99 (219)
                      +.++++|+.|.+.. ...   .    ...+...+..+++|+.|+++++...   .+..+. .+ +|++|.+.. .+.. .
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l---~l~~~~-~~-~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL---SIGKKP-RP-NLKSLEIISGGLPDSV  209 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC---BCCSCB-CT-TCSEEEEECSBCCHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc---eecccc-CC-CCcEEEEecCCCChHH
Confidence            34566777776642 100   0    1123344556667777777664211   112221 33 677777754 3221 0


Q ss_pred             Chhh--hcCCCccEEEEeee--cCCCCC-C----ccc--cCCCccceeeeccccCCce---EEEccCCCcccceeeeccc
Q 042636          100 PDWI--FKLKNVIRLGLDLS--GLTEDP-L----RVP--HALPNLLELRLGGTYNYKL---FHFEAGWFPKLQILTLFDF  165 (219)
Q Consensus       100 ~~~~--~~l~~L~~L~l~~~--~~~~~~-~----~~l--~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~  165 (219)
                      ...+  ..+++|++|+++.+  ...... .    ..+  ..+|+|+.|.+.++...+.   .......+++|++|+++.+
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            0111  24667777777532  111110 1    111  2467777777752221110   0111234667777777543


Q ss_pred             CCcceEE---EcC--CcccccceeeeecCC
Q 042636          166 VAVKSVI---IEK--GAMPDIRELGIGPFP  190 (219)
Q Consensus       166 ~~~~~~~---~~~--~~~p~L~~L~l~~~~  190 (219)
                       .+++..   +..  ..+++|+.|++.+|.
T Consensus       290 -~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          290 -VLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             -CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             -CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence             233210   011  235667777776653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.06  E-value=3e-06  Score=67.57  Aligned_cols=59  Identities=25%  Similarity=0.286  Sum_probs=41.0

Q ss_pred             CCCcccCccEEEecc--cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           80 LSSPPQYLQRLYLTG--NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        80 ~~~~~~~L~~L~l~~--~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      +.... +|++|++++  .++.+| .++..+++|+.|+|++|.+...+...+..+++|+.|+|+
T Consensus        27 l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           27 LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            44444 677888863  566655 456677788888888777776656667777888888877

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.01  E-value=3.4e-06  Score=67.97  Aligned_cols=157  Identities=22%  Similarity=0.337  Sum_probs=94.8

Q ss_pred             ccccceeeeee-CCC--C----hhHHHHHHhccCCCCeEEEEecCCCc--c--c---cccc-CCCcccCccEEEecccC-
Q 042636           33 LRQLRKLGIRP-KNG--N----GKDVCALIANLENLESLTVLMASKDE--I--L---DLQS-LSSPPQYLQRLYLTGNM-   96 (219)
Q Consensus        33 l~~L~~L~l~~-~~~--~----~~~~~~~l~~l~~L~~L~l~~~~~~~--~--~---~~~~-~~~~~~~L~~L~l~~~~-   96 (219)
                      ...++.|.+.. ...  .    ...+.+++.++++|+.|.+.......  .  .   .+.. +..+| +|++|.++++. 
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P-~L~~L~L~g~~~  184 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP-LLNNLKIKGTNN  184 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT-TCCEEEEECCBT
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCC-CCcEEEEeCCCC
Confidence            44566776653 111  1    12344456678999999997643211  0  0   1112 23345 99999998732 


Q ss_pred             CCCChhhhcCCCccEEEEeeecCCCCCCcccc--CCCccceeeec-c--ccCCce-E-----EEccCCCcccceeeeccc
Q 042636           97 KKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPH--ALPNLLELRLG-G--TYNYKL-F-----HFEAGWFPKLQILTLFDF  165 (219)
Q Consensus        97 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~-~--~~~~~~-~-----~~~~~~~~~L~~L~l~~~  165 (219)
                      ..++. + ..++|++|++..|.+.......+.  .+|+|++|.|+ +  ...+.. +     ......||+|+.|.+.++
T Consensus       185 l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          185 LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred             ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence            23443 2 378999999998887655444443  79999999986 2  222221 1     112245899999999876


Q ss_pred             CCcce---EEEcCCcccccceeeeecCCCCC
Q 042636          166 VAVKS---VIIEKGAMPDIRELGIGPFPLWS  193 (219)
Q Consensus       166 ~~~~~---~~~~~~~~p~L~~L~l~~~~~l~  193 (219)
                      .....   .....+.+|+|+.|+++++ .+.
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~  292 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAG-VLT  292 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSS-CCB
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCC-CCC
Confidence            54321   1122346899999999875 444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.97  E-value=5.8e-07  Score=72.75  Aligned_cols=154  Identities=16%  Similarity=0.105  Sum_probs=95.8

Q ss_pred             cccccccccccc--ChHhHHHHhcc-----cccceeeeeeCCCChhHHHHHH-hccCCCCeEEEEecCCCcccc--c-cc
Q 042636           11 LMDLQKLSIIEA--DSQVLKELMKL-----RQLRKLGIRPKNGNGKDVCALI-ANLENLESLTVLMASKDEILD--L-QS   79 (219)
Q Consensus        11 l~~L~~L~~~~~--~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~--~-~~   79 (219)
                      +.+|++|++.++  .......+..+     ++|++|+++. +.........+ ..+.+|+.|++++|.......  + ..
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLAS-CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTT-CCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecC-CCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            457888888877  44434444333     6899999984 33333333333 345689999999987643321  1 11


Q ss_pred             C-CCcccCccEEEecc-cCCC-----CChhhhcCCCccEEEEeeecCCCCC----CccccCCCccceeeec-cccCCceE
Q 042636           80 L-SSPPQYLQRLYLTG-NMKK-----LPDWIFKLKNVIRLGLDLSGLTEDP----LRVPHALPNLLELRLG-GTYNYKLF  147 (219)
Q Consensus        80 ~-~~~~~~L~~L~l~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~-~~~~~~~~  147 (219)
                      + ...+ +|++|++++ .++.     ++..+...++|++|++++|.+.+..    ...+...++|+.|+++ +.+.....
T Consensus       150 L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          150 LLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHSTTC-CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHhcCC-ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence            1 1223 899999987 5543     3444567889999999999886533    2345667899999998 43322111


Q ss_pred             ---EEccCCCcccceeeecccC
Q 042636          148 ---HFEAGWFPKLQILTLFDFV  166 (219)
Q Consensus       148 ---~~~~~~~~~L~~L~l~~~~  166 (219)
                         .......+.|++|++.++.
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHHHhCCCCCEEeccCCC
Confidence               0111134789999998765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=1.2e-05  Score=57.75  Aligned_cols=83  Identities=12%  Similarity=0.003  Sum_probs=41.6

Q ss_pred             ccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCc---ccCccEEEecc--cCCC-CChhhhcCCC
Q 042636           35 QLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSP---PQYLQRLYLTG--NMKK-LPDWIFKLKN  108 (219)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~--~~~~-l~~~~~~l~~  108 (219)
                      +|+.|++++ +....+....+.++++|++|++++|.......+..+...   ..+|++|++++  .+++ --..+..+++
T Consensus        62 ~L~~LDLs~-~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATD-SCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEES-CCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcC-CCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            455566653 223333344455566666666666543222222223221   11466666654  2332 0123456788


Q ss_pred             ccEEEEeeec
Q 042636          109 VIRLGLDLSG  118 (219)
Q Consensus       109 L~~L~l~~~~  118 (219)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888888875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.85  E-value=2.8e-05  Score=61.56  Aligned_cols=96  Identities=16%  Similarity=0.064  Sum_probs=64.3

Q ss_pred             CccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccc-eeeeccccCCceEE-EccCCCcccceee
Q 042636           86 YLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLL-ELRLGGTYNYKLFH-FEAGWFPKLQILT  161 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~-~~~~~~~~L~~L~  161 (219)
                      +|+.+++.. .++.+|.. +..+.+|+.+++..+ +...+..+|.++++|+ .+.+....  ..+. ....++++|+.+.
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l--~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASV--TAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTC--CEECTTTTTTCTTEEEEE
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccc--eEEchhhhhCCccCCEEE
Confidence            899999988 67777654 678899999999876 6666667899999999 99996322  2221 1233457788888


Q ss_pred             ecccCCcceEEE-cCCcccccceee
Q 042636          162 LFDFVAVKSVII-EKGAMPDIRELG  185 (219)
Q Consensus       162 l~~~~~~~~~~~-~~~~~p~L~~L~  185 (219)
                      +... .+..+.. ....+++|+.+.
T Consensus       304 l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          304 ATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             eCCC-ccCccchhhhcCCcchhhhc
Confidence            7542 3444432 122356666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.77  E-value=5.5e-06  Score=60.24  Aligned_cols=112  Identities=10%  Similarity=0.098  Sum_probs=68.2

Q ss_pred             hHHHHhcccccceeeeeeCC-CCh----hHHHHHHhccCCCCeEEEEecCCCcccc---cccCCCcccCccEEEecc-cC
Q 042636           26 VLKELMKLRQLRKLGIRPKN-GNG----KDVCALIANLENLESLTVLMASKDEILD---LQSLSSPPQYLQRLYLTG-NM   96 (219)
Q Consensus        26 ~~~~l~~l~~L~~L~l~~~~-~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~-~~   96 (219)
                      +...+...++|++|+++. + ...    ..+...+...++|++|++++|.......   ...+...+ +|++|++++ .+
T Consensus        28 l~~~l~~~~~L~~L~L~~-n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i  105 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNN-IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHTTCTTCCEEECTT-CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCC
T ss_pred             HHHHHhcCCCCCEEEecC-CCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcC
Confidence            444566677888888873 3 222    2344556666788888888876543211   12222223 788888876 54


Q ss_pred             CC-----CChhhhcCCCccEEEE--eeecCCCCCC----ccccCCCccceeeec
Q 042636           97 KK-----LPDWIFKLKNVIRLGL--DLSGLTEDPL----RVPHALPNLLELRLG  139 (219)
Q Consensus        97 ~~-----l~~~~~~l~~L~~L~l--~~~~~~~~~~----~~l~~l~~L~~L~l~  139 (219)
                      ..     +...+...++|++|++  ++|.+.....    ..+...++|++|+++
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~  159 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH  159 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence            43     3344556678888888  7777765322    234456788888886

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.60  E-value=6.8e-05  Score=59.31  Aligned_cols=104  Identities=18%  Similarity=0.149  Sum_probs=71.1

Q ss_pred             cccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecccCCCCC-hhhhcCCCcc
Q 042636           32 KLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLP-DWIFKLKNVI  110 (219)
Q Consensus        32 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~-~~~~~l~~L~  110 (219)
                      ...++..+.+.+ ......+......+++|+.+++..+..... +...+.+.. +|+++.+...++.++ ..+..+.+|+
T Consensus       200 ~~~~~~~l~~~~-~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I-~~~aF~~~~-~L~~l~l~~ni~~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          200 QPRDINFLTIEG-KLDNADFKLIRDYMPNLVSLDISKTNATTI-PDFTFAQKK-YLLKIKLPHNLKTIGQRVFSNCGRLA  276 (329)
T ss_dssp             CGGGCSEEEEEE-CCCHHHHHHHHHHCTTCCEEECTTBCCCEE-CTTTTTTCT-TCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred             CccccceEEEee-eecHHHHHHHHHhcCCCeEEECCCCCccee-cHhhhhCCC-CCCEEECCcccceehHHHhhCChhcc
Confidence            356777777773 222223322233478999999987654433 223445555 899999987666654 4467888999


Q ss_pred             -EEEEeeecCCCCCCccccCCCccceeeec
Q 042636          111 -RLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus       111 -~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                       .+++.. .+...+..+|.++++|+.+.+.
T Consensus       277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          277 GTLELPA-SVTAIEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             EEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred             EEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence             999976 6666666788999999999985

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.56  E-value=9.4e-05  Score=60.33  Aligned_cols=126  Identities=10%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecccCCCC-ChhhhcCCCccEEEEeeecCC-----CCCCcccc
Q 042636           55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKL-PDWIFKLKNVIRLGLDLSGLT-----EDPLRVPH  128 (219)
Q Consensus        55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l-~~~~~~l~~L~~L~l~~~~~~-----~~~~~~l~  128 (219)
                      +.++.+|+.+.+..+ . .......+.. . +|+.+.+...++.+ +..+..+.+|+.+.+.++...     ..+..+|.
T Consensus       222 F~~~~~L~~l~l~~~-l-~~I~~~aF~~-~-~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~  297 (401)
T 4fdw_A          222 FLKTSQLKTIEIPEN-V-STIGQEAFRE-S-GITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE  297 (401)
T ss_dssp             TTTCTTCCCEECCTT-C-CEECTTTTTT-C-CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred             hhCCCCCCEEecCCC-c-cCcccccccc-C-CccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence            456677777777542 1 1222223333 3 78888875555554 345677889999999776554     23345777


Q ss_pred             CCCccceeeeccccCCceEE-EccCCCcccceeeecccCCcceEEEc-CCcccccceeeeecC
Q 042636          129 ALPNLLELRLGGTYNYKLFH-FEAGWFPKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPF  189 (219)
Q Consensus       129 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~  189 (219)
                      ++++|+.+.+.+..  ..+. ....++++|+.+.+...  +..+... ...+ +|+.+.+.++
T Consensus       298 ~c~~L~~l~l~~~i--~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          298 GCPKLARFEIPESI--RILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TCTTCCEECCCTTC--CEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred             CCccCCeEEeCCce--EEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence            88888888885222  1111 11233467777777532  3333211 1234 6777777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.47  E-value=1.4e-05  Score=58.14  Aligned_cols=89  Identities=13%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             hHHHHHHhccCCCCeEEEEec-CCCccc--c-cccCCCcccCccEEEecc-cCCC-----CChhhhcCCCccEEEEeeec
Q 042636           49 KDVCALIANLENLESLTVLMA-SKDEIL--D-LQSLSSPPQYLQRLYLTG-NMKK-----LPDWIFKLKNVIRLGLDLSG  118 (219)
Q Consensus        49 ~~~~~~l~~l~~L~~L~l~~~-~~~~~~--~-~~~~~~~~~~L~~L~l~~-~~~~-----l~~~~~~l~~L~~L~l~~~~  118 (219)
                      +.+...+...++|++|++++| ......  . ...+...+ +|++|++++ .+..     +...+...++|++|++++|.
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            344555666677777777766 443211  1 12233333 677777776 4432     22334455677777777777


Q ss_pred             CCCCC----CccccCCCccceeee
Q 042636          119 LTEDP----LRVPHALPNLLELRL  138 (219)
Q Consensus       119 ~~~~~----~~~l~~l~~L~~L~l  138 (219)
                      +....    ...+...++|++|++
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEe
Confidence            65532    233455667777777

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.37  E-value=0.00019  Score=58.52  Aligned_cols=99  Identities=18%  Similarity=0.230  Sum_probs=51.1

Q ss_pred             CccEEEecccCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccc-cCCc-eEEEcc---CCCccccee
Q 042636           86 YLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGT-YNYK-LFHFEA---GWFPKLQIL  160 (219)
Q Consensus        86 ~L~~L~l~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~-~~~~~~---~~~~~L~~L  160 (219)
                      +|+.+.+...++.++.....-.+|+.+.+. +.+......+|.++++|+.+.+..+ .... ...+..   .++++|+.+
T Consensus       227 ~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l  305 (401)
T 4fdw_A          227 QLKTIEIPENVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF  305 (401)
T ss_dssp             TCCCEECCTTCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred             CCCEEecCCCccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence            566666654333333222122567777773 3454444567778888888888622 2101 011222   345677777


Q ss_pred             eecccCCcceEEEc-CCcccccceeeee
Q 042636          161 TLFDFVAVKSVIIE-KGAMPDIRELGIG  187 (219)
Q Consensus       161 ~l~~~~~~~~~~~~-~~~~p~L~~L~l~  187 (219)
                      .+.+  .+..+... ...+++|+.+.+.
T Consensus       306 ~l~~--~i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          306 EIPE--SIRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             CCCT--TCCEECTTTTTTCCSCCEEEEC
T ss_pred             EeCC--ceEEEhhhhhcCCCCccEEEEC
Confidence            7763  24433211 1235677777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.12  E-value=0.00017  Score=55.46  Aligned_cols=63  Identities=29%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             hccCCCCeEEEEecCCCccccccc-CCCcccCccEEEecc-cCCCCChhhhcCC--CccEEEEeeecCC
Q 042636           56 ANLENLESLTVLMASKDEILDLQS-LSSPPQYLQRLYLTG-NMKKLPDWIFKLK--NVIRLGLDLSGLT  120 (219)
Q Consensus        56 ~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~l~~~~~~l~--~L~~L~l~~~~~~  120 (219)
                      .++++|+.|++++|.......++. +...+ +|+.|++++ .++.+ ..+..+.  +|+.|++++|.+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHST-TCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCC-CCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence            356777777777765544322211 11223 555555554 33332 1222222  5555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.71  E-value=0.00098  Score=51.18  Aligned_cols=81  Identities=16%  Similarity=0.249  Sum_probs=55.0

Q ss_pred             hcccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC-CC-------
Q 042636           31 MKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-LP-------  100 (219)
Q Consensus        31 ~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l~-------  100 (219)
                      .++++|+.|+++. .......+...+..+++|+.|++++|.......+..+...  +|++|.+.+ .+.. +|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l--~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL--KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS--CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC--CcceEEccCCcCccccCcchhHHH
Confidence            4688999999995 2222234555667899999999999887765445555543  899999987 4432 33       


Q ss_pred             hhhhcCCCccEEE
Q 042636          101 DWIFKLKNVIRLG  113 (219)
Q Consensus       101 ~~~~~l~~L~~L~  113 (219)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            1245566776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.62  E-value=0.07  Score=35.98  Aligned_cols=33  Identities=33%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             CCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636          107 KNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      .+|+.|+|++|.+...+...+..+++|+.|+|.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   63 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLG   63 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence            456666666666666555556666666666664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.51  E-value=0.049  Score=39.68  Aligned_cols=109  Identities=11%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             HhcccccceeeeeeCCCC----hhHHHHHHhccCCCCeEEEEecCCCcccc--c-ccCCCcccCccEEEecc-cCCC---
Q 042636           30 LMKLRQLRKLGIRPKNGN----GKDVCALIANLENLESLTVLMASKDEILD--L-QSLSSPPQYLQRLYLTG-NMKK---   98 (219)
Q Consensus        30 l~~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~-~~~~~~~~~L~~L~l~~-~~~~---   98 (219)
                      +.+-+.|+.|+++.....    ...+.+.+..-+.|+.|++++|.......  + +.+..-. .|++|+++. .+..   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC-ccCeEecCCCcCCHHHH
Confidence            344567888887721011    22455666666788888888776543221  1 1222222 788888876 5443   


Q ss_pred             --CChhhhcCCCccEEEEeeecC---CCCC----CccccCCCccceeeec
Q 042636           99 --LPDWIFKLKNVIRLGLDLSGL---TEDP----LRVPHALPNLLELRLG  139 (219)
Q Consensus        99 --l~~~~~~l~~L~~L~l~~~~~---~~~~----~~~l~~l~~L~~L~l~  139 (219)
                        +-..+..-..|+.|+++++..   ....    ...+..-+.|+.|+++
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~  165 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS  165 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence              222334445688888875432   2110    1234445778877775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.27  E-value=0.095  Score=42.17  Aligned_cols=168  Identities=7%  Similarity=-0.032  Sum_probs=81.6

Q ss_pred             cccccccccccccccChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636            8 LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL   87 (219)
Q Consensus         8 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L   87 (219)
                      +.++..|+.+.+...............+|+.+.+..  ....-....+.++..|+.+.+..+.. . .....+.... .+
T Consensus       204 F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~-~-i~~~~F~~~~-~l  278 (394)
T 4fs7_A          204 FAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKL-R-IGGSLFYNCS-GL  278 (394)
T ss_dssp             TTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTC-E-ECSCTTTTCT-TC
T ss_pred             hccccccceeecCCCceEeehhhcccCCCceEEECC--CceecccccccccccceeEEcCCCcc-e-eecccccccc-cc
Confidence            455667777665443111111222345677776652  11000012245677888888765321 1 1112222222 56


Q ss_pred             cEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEE-EccCCCcccceeeeccc
Q 042636           88 QRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFH-FEAGWFPKLQILTLFDF  165 (219)
Q Consensus        88 ~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~  165 (219)
                      +...... .+.  ...+..+.+|+.+.+..+ +......++.++.+|+.+.+.+..  ..+. ....++.+|+.+.+...
T Consensus       279 ~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v--~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          279 KKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLV--EEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             CEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTC--CEECTTTTTTCTTCCEECCCTT
T ss_pred             ceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCcc--cEEhHHhccCCCCCCEEEECcc
Confidence            6655543 221  123456778888888543 444445677788888888874221  1111 11223456777766532


Q ss_pred             CCcceEEE-cCCcccccceeeee
Q 042636          166 VAVKSVII-EKGAMPDIRELGIG  187 (219)
Q Consensus       166 ~~~~~~~~-~~~~~p~L~~L~l~  187 (219)
                        +..+.. ....+++|+.+.+.
T Consensus       354 --l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          354 --LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             --CCEECTTTBTTCTTCCEEEEE
T ss_pred             --ccEehHHHhhCCCCCCEEEEC
Confidence              333221 11234566666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=86.29  E-value=1.3  Score=35.47  Aligned_cols=105  Identities=10%  Similarity=0.042  Sum_probs=60.4

Q ss_pred             HHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecccCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCc
Q 042636           54 LIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPN  132 (219)
Q Consensus        54 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  132 (219)
                      ++.++.+|+.+.+.....  ...-..+.... +|+.+.+...++.++ ..+..+.+|+.+.+..+ +......+|.++.+
T Consensus       260 aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~-~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVV--SIGTGAFMNCP-ALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTCSSCCEEECCTTCC--EECTTTTTTCT-TCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccEEecccccc--eecCccccccc-ccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            356677788877654211  11112233333 788888765555544 34567788888888543 44444467788888


Q ss_pred             cceeeeccccCCceEE-EccCCCcccceeeecc
Q 042636          133 LLELRLGGTYNYKLFH-FEAGWFPKLQILTLFD  164 (219)
Q Consensus       133 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~  164 (219)
                      |+.+.+-...  ..+. ....++++|+.+.+.+
T Consensus       336 L~~i~ip~sv--~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          336 LERIAIPSSV--TKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             CCEEEECTTC--CBCCGGGGTTCTTCCEEEESS
T ss_pred             CCEEEECccc--CEEhHhHhhCCCCCCEEEECC
Confidence            8888884221  1111 1233456777777764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=85.46  E-value=0.33  Score=38.93  Aligned_cols=104  Identities=10%  Similarity=0.034  Sum_probs=66.2

Q ss_pred             HhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecccCCCCC-hhhhcCCC
Q 042636           30 LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLP-DWIFKLKN  108 (219)
Q Consensus        30 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~-~~~~~l~~  108 (219)
                      +.++.+|+.+.+..  ....-...++.++.+|+.+.+.. .. ....-..+.+.. +|+.+.+...++.+. ..+..+.+
T Consensus       261 F~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~-~i-~~I~~~aF~~c~-~L~~i~lp~~v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          261 FDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS-RI-TELPESVFAGCI-SLKSIDIPEGITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT-TC-CEECTTTTTTCT-TCCEEECCTTCCEECTTTTTTCTT
T ss_pred             eeecccccEEeccc--ccceecCcccccccccccccCCC-cc-cccCceeecCCC-CcCEEEeCCcccEehHhHhhCCCC
Confidence            55677888877753  11111112356778888888753 22 222223333334 899998876555543 45678899


Q ss_pred             ccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636          109 VIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus       109 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      |+.+.+.. .+......+|.++++|+.+.+.
T Consensus       336 L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          336 LERIAIPS-SVTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             CCEEEECT-TCCBCCGGGGTTCTTCCEEEES
T ss_pred             CCEEEECc-ccCEEhHhHhhCCCCCCEEEEC
Confidence            99999954 3555556788999999999986

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=84.46  E-value=0.88  Score=36.43  Aligned_cols=125  Identities=11%  Similarity=0.034  Sum_probs=71.9

Q ss_pred             HhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecccCCCCC-hhhhcCCC
Q 042636           30 LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLP-DWIFKLKN  108 (219)
Q Consensus        30 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~-~~~~~l~~  108 (219)
                      +..+.+++.+.+..  ....-....+.++..++........    .+-..+.... +|+.+.+...++.++ ..+..+.+
T Consensus       249 f~~~~~l~~~~~~~--~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~-~L~~i~l~~~i~~I~~~aF~~c~~  321 (394)
T 4fs7_A          249 FYGCTDLESISIQN--NKLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCS-SLTEVKLLDSVKFIGEEAFESCTS  321 (394)
T ss_dssp             TTTCSSCCEEEECC--TTCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCT-TCCEEEECTTCCEECTTTTTTCTT
T ss_pred             ccccccceeEEcCC--CcceeeccccccccccceeccCcee----eccccccccc-cccccccccccceechhhhcCCCC
Confidence            45567777777763  1111111224566777777664321    1112233333 888888876555543 34677899


Q ss_pred             ccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEE-EccCCCcccceeeecc
Q 042636          109 VIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFH-FEAGWFPKLQILTLFD  164 (219)
Q Consensus       109 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~  164 (219)
                      |+.+++.. .+......+|.++.+|+.+.+....  ..+. ....++++|+.+.+..
T Consensus       322 L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~l--~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          322 LVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLSL--RKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CCEECCCT-TCCEECTTTTTTCTTCCEECCCTTC--CEECTTTBTTCTTCCEEEEEG
T ss_pred             CCEEEeCC-cccEEhHHhccCCCCCCEEEECccc--cEehHHHhhCCCCCCEEEECC
Confidence            99999853 3555455678899999999885222  1121 1123456777777753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=84.20  E-value=2.4  Score=33.51  Aligned_cols=53  Identities=21%  Similarity=0.174  Sum_probs=26.9

Q ss_pred             CccEEEecccCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeee
Q 042636           86 YLQRLYLTGNMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRL  138 (219)
Q Consensus        86 ~L~~L~l~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  138 (219)
                      +++.+.+...+..++ ..+..+.+|+.+.+..+.+......++.++.+|+.+.+
T Consensus       264 ~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          264 ALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             TCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             hhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            455555543333322 22345566666666554444433445556666666665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=81.66  E-value=1.4  Score=29.35  Aligned_cols=39  Identities=26%  Similarity=0.204  Sum_probs=30.7

Q ss_pred             cccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCC
Q 042636           83 PPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTE  121 (219)
Q Consensus        83 ~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~  121 (219)
                      .+.++++|++++ .++.+|.. +..+++|+.|+|++|.+.-
T Consensus        29 lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            344899999998 78887754 5678899999999887653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=80.44  E-value=1.4  Score=34.83  Aligned_cols=104  Identities=12%  Similarity=0.107  Sum_probs=63.4

Q ss_pred             HhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC-hhhhcCC
Q 042636           30 LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLK  107 (219)
Q Consensus        30 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~  107 (219)
                      +.++.+|+.+.+..  ....--..++.++.+|+.+.+... . .......+.... +|+.+.+.. .++.++ ..+..+.
T Consensus       236 f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~-i-~~i~~~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          236 FYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK-V-KTVPYLLCSGCS-NLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC-C-SEECTTTTTTCT-TCCEEEECCTTCCEECTTTTTTCT
T ss_pred             ccCCccceEEEcCC--CccEeCccccceeehhcccccccc-c-eecccccccccc-ccccccccccccceehhhhhcCCC
Confidence            44566677776652  110001123466777888887542 1 222222333344 899999975 566554 4567889


Q ss_pred             CccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636          108 NVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      +|+.+.+..+ +......+|.++.+|+.+.+-
T Consensus       311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            9999999543 544445678889999988874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 12/137 (8%)

Query: 7   GLGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTV 66
            L  L  L KL+ ++  +  +  +  L  L  L     N N  +  + I+NL+NL  LT+
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 67  LMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIFKLKNVIRLGLD---LSGLTEDP 123
                + I D+  +SS  + LQRL+   N       +  L N+  L      +S LT  P
Sbjct: 315 ---YFNNISDISPVSSLTK-LQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT--P 368

Query: 124 LRVPHALPNLLELRLGG 140
           L     L  + +L L  
Sbjct: 369 L---ANLTRITQLGLND 382

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.53
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.39
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.38
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.37
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.32
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.31
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.29
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.29
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.27
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.27
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.25
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.19
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.19
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.12
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.01
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.0
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.96
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.95
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.92
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.9
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.88
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.86
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.81
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.78
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.2
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.96
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.24
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.84
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.77

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.6e-15  Score=113.79  Aligned_cols=180  Identities=16%  Similarity=0.059  Sum_probs=129.7

Q ss_pred             CcccCCcccccccccccccccc-ChHhH-HHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA-DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      ++.+|+++.  +++++|++.++ ...++ ..+.++++|++|+++.  +....+. .++.+++|++|++++|......  .
T Consensus        22 L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~--N~l~~l~-~~~~l~~L~~L~Ls~N~l~~~~--~   94 (266)
T d1p9ag_          22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--AELTKLQ-VDGTLPVLGTLDLSHNQLQSLP--L   94 (266)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT--SCCCEEE-CCSCCTTCCEEECCSSCCSSCC--C
T ss_pred             CCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccc--ccccccc-cccccccccccccccccccccc--c
Confidence            456888775  57899999888 44444 5588999999999984  2222221 2467899999999998765432  3


Q ss_pred             cCCCcccCccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCc
Q 042636           79 SLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFP  155 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~  155 (219)
                      .+..++ +|+.|+++. .+..++ ..+..+.+++.|++++|.+...+...+..+++++.++++ +....- .......++
T Consensus        95 ~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~-~~~~~~~l~  172 (266)
T d1p9ag_          95 LGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLE  172 (266)
T ss_dssp             CTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCT
T ss_pred             cccccc-ccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc-Ccccccccc
Confidence            344555 899999987 555544 345677899999999998888777778889999999998 433221 122245678


Q ss_pred             ccceeeecccCCcceEEEcCCcccccceeeeecCC
Q 042636          156 KLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                      +|++|++.++. ++.++.....+++|+.|++.+++
T Consensus       173 ~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         173 NLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccceeecccCC-CcccChhHCCCCCCCEEEecCCC
Confidence            99999999754 66665555567899999999865

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.46  E-value=2.8e-15  Score=116.87  Aligned_cols=190  Identities=17%  Similarity=0.144  Sum_probs=95.6

Q ss_pred             ccCCccccccccccccccc-c--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636            3 KVHRGLGSLMDLQKLSIIE-A--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS   79 (219)
Q Consensus         3 ~lP~~l~~l~~L~~L~~~~-~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   79 (219)
                      .+|++++++++|++|++.+ +  .+.+|++++++++|++|+++. +...+.....+.++.+|+++++++|......+ ..
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~-N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p-~~  144 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PS  144 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE-ECCEEECCGGGGGCTTCCEEECCSSEEESCCC-GG
T ss_pred             CCChHHhcCccccccccccccccccccccccccccccchhhhcc-ccccccccccccchhhhcccccccccccccCc-hh
Confidence            3566666666666666654 2  345666666666666666663 11222222234455556666665543322221 23


Q ss_pred             CCCcccCccEEEecc-cCC-CCChhhhcCCCc-cEEEEeeecCCCC-----------------------CCccccCCCcc
Q 042636           80 LSSPPQYLQRLYLTG-NMK-KLPDWIFKLKNV-IRLGLDLSGLTED-----------------------PLRVPHALPNL  133 (219)
Q Consensus        80 ~~~~~~~L~~L~l~~-~~~-~l~~~~~~l~~L-~~L~l~~~~~~~~-----------------------~~~~l~~l~~L  133 (219)
                      +...+ +++.+++++ .+. .+|.++..+..+ +.++++.|++.+.                       ....+..++++
T Consensus       145 l~~l~-~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l  223 (313)
T d1ogqa_         145 ISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             GGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCC
T ss_pred             hccCc-ccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33333 566666654 332 245444444433 4444444433221                       11223344555


Q ss_pred             ceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchh
Q 042636          134 LELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIF  197 (219)
Q Consensus       134 ~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~  197 (219)
                      +.+++. +...+. + ...+.++.|+.|++.++.-.+.++...+.+++|+.|+++++.--..+|.
T Consensus       224 ~~l~~~~~~l~~~-~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         224 QKIHLAKNSLAFD-L-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             SEEECCSSEECCB-G-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccc-c-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            555554 222221 1 1234467788888876543334544455678888888887643335554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8.5e-14  Score=106.95  Aligned_cols=184  Identities=21%  Similarity=0.165  Sum_probs=110.8

Q ss_pred             cccCCcccccccccccccccc-ChHhH-HHHhcccccceeeeee-CC----------------------CChhHH-HHHH
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVL-KELMKLRQLRKLGIRP-KN----------------------GNGKDV-CALI   55 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~-~~l~~l~~L~~L~l~~-~~----------------------~~~~~~-~~~l   55 (219)
                      +.+|..+.  +++++|+++++ ...++ ..+.++++|++|+++. ..                      .....+ ...+
T Consensus        24 ~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  101 (284)
T d1ozna_          24 QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (284)
T ss_dssp             SSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             CccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            45666654  45677777776 33444 3467777888887764 10                      000000 2235


Q ss_pred             hccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636           56 ANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL  133 (219)
Q Consensus        56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  133 (219)
                      +++++|++|+++++...... ...+.... +|+.+++.+ .++.+| ..+..+.+|+.|++++|.+...+...+.++++|
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~-~~~~~~~~-~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELG-PGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCC-TTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cccccCCEEecCCccccccc-ccccchhc-ccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc
Confidence            66778888888776543322 12233333 788888877 676665 345667788888888887776656677788888


Q ss_pred             ceeeeccccCCceEEEccCCCcccceeeecccCCcceEE-EcCCcccccceeeeecCC
Q 042636          134 LELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVI-IEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       134 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~p~L~~L~l~~~~  190 (219)
                      +.+.+..+............+++|++|++.++. +..+. ...+.+++|+.|++.+++
T Consensus       180 ~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             chhhhhhccccccChhHhhhhhhcccccccccc-cccccccccccccccCEEEecCCC
Confidence            888887332222112234456788888887644 33332 223457888888887754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.6e-13  Score=103.39  Aligned_cols=165  Identities=18%  Similarity=0.032  Sum_probs=102.8

Q ss_pred             hHhHHHHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCccc------------------------ccc
Q 042636           24 SQVLKELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEIL------------------------DLQ   78 (219)
Q Consensus        24 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~------------------------~~~   78 (219)
                      ..+|..+  .+++++|++++  +....++ ..+.++++|++|+++++......                        +..
T Consensus        24 ~~iP~~i--p~~~~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          24 QAVPVGI--PAASQRIFLHG--NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             SSCCTTC--CTTCSEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CccCCCC--CCCCCEEECcC--CcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccch
Confidence            3444433  25789999984  3333333 35788999999999887542111                        011


Q ss_pred             cCCCcccCccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEE-EccCCCc
Q 042636           79 SLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFH-FEAGWFP  155 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~  155 (219)
                      .+..++ +|++|+++. .+..++ ..+....+|+.+++++|.+...+...+..+++|+.|+++.+.. ..+. ....+++
T Consensus       100 ~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l-~~l~~~~f~~l~  177 (284)
T d1ozna_         100 TFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLH  177 (284)
T ss_dssp             TTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCT
T ss_pred             hhcccc-cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc-cccchhhhcccc
Confidence            233344 788888876 554443 3455677888888888888776667778888899888873221 1121 1233467


Q ss_pred             ccceeeecccCCcceEE-EcCCcccccceeeeecCCCCCcch
Q 042636          156 KLQILTLFDFVAVKSVI-IEKGAMPDIRELGIGPFPLWSMYI  196 (219)
Q Consensus       156 ~L~~L~l~~~~~~~~~~-~~~~~~p~L~~L~l~~~~~l~~~~  196 (219)
                      .|+.+.+.++. +..+. ...+.+++|+.|+++++. +..++
T Consensus       178 ~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~  217 (284)
T d1ozna_         178 SLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN-LSALP  217 (284)
T ss_dssp             TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred             ccchhhhhhcc-ccccChhHhhhhhhcccccccccc-ccccc
Confidence            78888888654 33332 233567889999998865 34443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1e-13  Score=105.55  Aligned_cols=183  Identities=17%  Similarity=0.065  Sum_probs=128.2

Q ss_pred             cccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccccccCCCcccCcc
Q 042636           11 LMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQ   88 (219)
Q Consensus        11 l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~   88 (219)
                      ...+.+++..+. ...+|+++.  +++++|+++.  +....++ ..+.++++|++|++++|.....   +....++ +|+
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~--N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l---~~~~~l~-~L~   80 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSE--NLLYTFSLATLMPYTRLTQLNLDRAELTKL---QVDGTLP-VLG   80 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTT--SCCSEEEGGGGTTCTTCCEEECTTSCCCEE---ECCSCCT-TCC
T ss_pred             cCCCeEEEccCCCCCeeCcCcC--cCCCEEECcC--CcCCCcCHHHhhcccccccccccccccccc---ccccccc-ccc
Confidence            334444443333 345665442  5899999994  3333332 4578999999999999876543   2334455 999


Q ss_pred             EEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeecccCC
Q 042636           89 RLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVA  167 (219)
Q Consensus        89 ~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  167 (219)
                      +|++++ .++..+..+..+++|+.|+++++.+.......+..+++++.|.+..+............++.++.+++.++. 
T Consensus        81 ~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-  159 (266)
T d1p9ag_          81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-  159 (266)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-
T ss_pred             ccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc-
Confidence            999998 787788888899999999999999888777778899999999998332222111223457889999998754 


Q ss_pred             cceEEEc-CCcccccceeeeecCCCCCcchhHHhhhh
Q 042636          168 VKSVIIE-KGAMPDIRELGIGPFPLWSMYIFLTDHIL  203 (219)
Q Consensus       168 ~~~~~~~-~~~~p~L~~L~l~~~~~l~~~~~~~~~l~  203 (219)
                      +..+... .+.+++|+.|+++++ ++..+|.++..+.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~  195 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSH  195 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             ccccCccccccccccceeecccC-CCcccChhHCCCC
Confidence            5555432 346899999999997 4778888766543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=9.3e-13  Score=95.90  Aligned_cols=150  Identities=18%  Similarity=0.141  Sum_probs=97.4

Q ss_pred             cccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCcc
Q 042636           32 KLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVI  110 (219)
Q Consensus        32 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~  110 (219)
                      .+.++++|++..  .....+ ..++.+++|++|++++|......   .+..++ +|++|+++. .+..++ .+..+++|+
T Consensus        38 ~l~~l~~L~l~~--~~i~~l-~~l~~l~nL~~L~Ls~N~l~~~~---~l~~l~-~L~~L~l~~n~~~~~~-~l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADR--LGIKSI-DGVEYLNNLTQINFSNNQLTDIT---PLKNLT-KLVDILMNNNQIADIT-PLANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTT--SCCCCC-TTGGGCTTCCEEECCSSCCCCCG---GGTTCT-TCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred             HhcCCCEEECCC--CCCCCc-cccccCCCcCcCccccccccCcc---cccCCc-cccccccccccccccc-ccccccccc
Confidence            466777887774  111111 34677888888888887654432   344555 888888887 555555 467788888


Q ss_pred             EEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCC
Q 042636          111 RLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       111 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~  190 (219)
                      .++++++.....  ..+..+++|+.|+++++.... +. ....+++++.|++.++. +..+. +.+.+++|+.|++++++
T Consensus       110 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~-l~~l~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         110 GLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQ-VTDLK-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred             cccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-ccccccccccccccccc-ccCCc-cccCCCCCCEEECCCCC
Confidence            888887766553  346778888888887322111 11 24567888888887653 44432 24568888899888874


Q ss_pred             CCCcch
Q 042636          191 LWSMYI  196 (219)
Q Consensus       191 ~l~~~~  196 (219)
                       +.+++
T Consensus       184 -i~~i~  188 (199)
T d2omxa2         184 -VSDIS  188 (199)
T ss_dssp             -CCCCG
T ss_pred             -CCCCc
Confidence             66554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=1.1e-12  Score=96.33  Aligned_cols=51  Identities=31%  Similarity=0.471  Sum_probs=22.1

Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      +|+.|++++ .++.+| .+..+++|+.+++++|.+..  ...+..+++++.++++
T Consensus        91 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          91 NLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLG  142 (210)
T ss_dssp             TCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECC
T ss_pred             cccccccccccccccc-cccccccccccccccccccc--cccccccccccccccc
Confidence            445555444 344333 23444445555554444332  1233444444444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.29  E-value=1.4e-13  Score=107.06  Aligned_cols=185  Identities=15%  Similarity=0.079  Sum_probs=124.8

Q ss_pred             ccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636            3 KVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL   80 (219)
Q Consensus         3 ~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   80 (219)
                      .+|++++++++|++|++.++  ....+..+..+.+|+.+++.. +.....++..+.++++++++++++|......+ ..+
T Consensus        92 ~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~-N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip-~~~  169 (313)
T d1ogqa_          92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY-NALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSY  169 (313)
T ss_dssp             CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS-SEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGG
T ss_pred             ccccccccccccchhhhccccccccccccccchhhhccccccc-ccccccCchhhccCcccceeeccccccccccc-ccc
Confidence            58999999999999999887  333445577888999998883 33334455667889999999998876543322 112


Q ss_pred             CCcccCccEEEecc-c-----------------------C-CCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccce
Q 042636           81 SSPPQYLQRLYLTG-N-----------------------M-KKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLE  135 (219)
Q Consensus        81 ~~~~~~L~~L~l~~-~-----------------------~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  135 (219)
                      ......++.+.++. .                       . ...|.++..+.+++.++++++.+... +..+..+++|+.
T Consensus       170 ~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~  248 (313)
T d1ogqa_         170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNG  248 (313)
T ss_dssp             GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            22221223333322 1                       1 12455566778999999998888664 456788999999


Q ss_pred             eeec-cccCCceEEEccCCCcccceeeecccCCcc-eEEEcCCcccccceeeeecCCCCC
Q 042636          136 LRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVK-SVIIEKGAMPDIRELGIGPFPLWS  193 (219)
Q Consensus       136 L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~p~L~~L~l~~~~~l~  193 (219)
                      |+++ +...+. ++...+.+++|++|++.++. +. .++ +.+.+++|+.+++.+++.+-
T Consensus       249 L~Ls~N~l~g~-iP~~l~~L~~L~~L~Ls~N~-l~g~iP-~~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         249 LDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNN-LCGEIP-QGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             EECCSSCCEEC-CCGGGGGCTTCCEEECCSSE-EEEECC-CSTTGGGSCGGGTCSSSEEE
T ss_pred             ccCccCeeccc-CChHHhCCCCCCEEECcCCc-ccccCC-CcccCCCCCHHHhCCCcccc
Confidence            9998 444332 44445678999999999754 44 333 34567888888888876543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4e-13  Score=103.28  Aligned_cols=180  Identities=20%  Similarity=0.174  Sum_probs=114.7

Q ss_pred             ccccccccccccccc--ChHh-HHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC-CCc
Q 042636            8 LGSLMDLQKLSIIEA--DSQV-LKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL-SSP   83 (219)
Q Consensus         8 l~~l~~L~~L~~~~~--~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~   83 (219)
                      .....+|++|++.++  .... ..-+.++++|++|++.+ +.........++++++|++|+++++.......+..+ ...
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~-~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG-LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT-CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc-cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence            345668899998877  4443 44467899999999983 445567778888899999999987644322212222 123


Q ss_pred             ccCccEEEecc--cCCC--CChhhh-cCCCccEEEEeeec--CCCCCCc-cccCCCccceeeecccc-CCceEEEccCCC
Q 042636           84 PQYLQRLYLTG--NMKK--LPDWIF-KLKNVIRLGLDLSG--LTEDPLR-VPHALPNLLELRLGGTY-NYKLFHFEAGWF  154 (219)
Q Consensus        84 ~~~L~~L~l~~--~~~~--l~~~~~-~l~~L~~L~l~~~~--~~~~~~~-~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~  154 (219)
                      + +|++|++++  .++.  +...+. ..++|+.|+++++.  +....+. ...++|+|++|+++.+. ..+........+
T Consensus       121 ~-~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         121 S-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             T-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             H-hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhccc
Confidence            4 899999986  2322  222232 34789999998763  3332222 23568999999997332 222122233457


Q ss_pred             cccceeeecccCCcceEEE-cCCcccccceeeeecC
Q 042636          155 PKLQILTLFDFVAVKSVII-EKGAMPDIRELGIGPF  189 (219)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~-~~~~~p~L~~L~l~~~  189 (219)
                      ++|++|++.+|..+.+-.+ ..+.+|+|+.|++.+|
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            8999999988766543221 2345789999999887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.4e-13  Score=104.47  Aligned_cols=158  Identities=22%  Similarity=0.287  Sum_probs=107.1

Q ss_pred             ccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChh-HHHHHHhccCCCCeEEEEecCCCccccc-ccCCCc
Q 042636            8 LGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGK-DVCALIANLENLESLTVLMASKDEILDL-QSLSSP   83 (219)
Q Consensus         8 l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~   83 (219)
                      +.++++|++|++.++  ....+..++++++|++|++++...... .+.....++++|++|+++++........ ..+...
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            567889999999887  677888899999999999984112222 3333346789999999998643221111 112222


Q ss_pred             ccCccEEEeccc---CCC--CChhhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeecccc-CCceEEEccCCCcc
Q 042636           84 PQYLQRLYLTGN---MKK--LPDWIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLGGTY-NYKLFHFEAGWFPK  156 (219)
Q Consensus        84 ~~~L~~L~l~~~---~~~--l~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~  156 (219)
                      ..+|++|++++.   ++.  +......+++|++|++++|. +++..+..+..+++|++|++++|. ..+........+|+
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            238999999862   322  33344678999999999875 555556778899999999998432 11111122345789


Q ss_pred             cceeeeccc
Q 042636          157 LQILTLFDF  165 (219)
Q Consensus       157 L~~L~l~~~  165 (219)
                      |+.|++.++
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            999999876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=4.5e-12  Score=93.98  Aligned_cols=173  Identities=19%  Similarity=0.194  Sum_probs=111.7

Q ss_pred             ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636            8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY   86 (219)
Q Consensus         8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   86 (219)
                      +..+.+|++|++.++ ...+ +.+.++++|++|+++.  +..... ..+.++++|+.++++++....   ++.+.+++ +
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~--n~i~~~-~~l~~l~~l~~l~~~~n~~~~---i~~l~~l~-~  108 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKD--NQITDL-APLKNLTKITELELSGNPLKN---VSAIAGLQ-S  108 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCS--SCCCCC-GGGTTCCSCCEEECCSCCCSC---CGGGTTCT-T
T ss_pred             HHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCC--ceeecc-ccccccccccccccccccccc---cccccccc-c
Confidence            356788888888877 3334 4688899999999984  211111 236888899999988765543   33455555 8


Q ss_pred             ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeeccc
Q 042636           87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDF  165 (219)
Q Consensus        87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  165 (219)
                      |+.+.++. .....+ .+.....++.+.++.+.+...  ..+..+++|+.|.+..+....  ....+.+++|+.|++.++
T Consensus       109 L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         109 IKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDN  183 (227)
T ss_dssp             CCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSS
T ss_pred             ccccccccccccccc-hhccccchhhhhchhhhhchh--hhhcccccccccccccccccc--chhhcccccceecccCCC
Confidence            88888876 433332 345567778888877766543  345677888888886332211  112456788888888765


Q ss_pred             CCcceEEEcCCcccccceeeeecCCCCCcch
Q 042636          166 VAVKSVIIEKGAMPDIRELGIGPFPLWSMYI  196 (219)
Q Consensus       166 ~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~  196 (219)
                       .++.+. ..+.+|+|+.|++++| ++.+++
T Consensus       184 -~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~  211 (227)
T d1h6ua2         184 -KISDIS-PLASLPNLIEVHLKNN-QISDVS  211 (227)
T ss_dssp             -CCCCCG-GGGGCTTCCEEECTTS-CCCBCG
T ss_pred             -ccCCCh-hhcCCCCCCEEECcCC-cCCCCc
Confidence             355432 2345788888888887 466654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.25  E-value=4.4e-12  Score=93.05  Aligned_cols=165  Identities=20%  Similarity=0.175  Sum_probs=118.6

Q ss_pred             cccccccccccccChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccE
Q 042636           10 SLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQR   89 (219)
Q Consensus        10 ~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~   89 (219)
                      .+.+|++|++.++.......+..+++|++|++++  +....+ ..++++++|++|++++|....   ++.+..++ +|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~--n~i~~l-~~~~~l~~L~~L~l~~n~i~~---l~~l~~l~-~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG--NKLTDI-KPLANLKNLGWLFLDENKVKD---LSSLKDLK-KLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCS--SCCCCC-GGGTTCTTCCEEECCSSCCCC---GGGGTTCT-TCCE
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCC--ccccCc-cccccCccccccccccccccc---cccccccc-cccc
Confidence            4778888888777222223578899999999995  222222 236789999999999886544   33455566 9999


Q ss_pred             EEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCc
Q 042636           90 LYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAV  168 (219)
Q Consensus        90 L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  168 (219)
                      |++.+ .+..++ .+..+++++.++++++.+...  .....+++|+.++++.+.... +. ....+++|+.|++.++. +
T Consensus       117 L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~-i  190 (210)
T d1h6ta2         117 LSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNH-I  190 (210)
T ss_dssp             EECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC-C
T ss_pred             cccccccccccc-ccccccccccccccccccccc--ccccccccccccccccccccc-cc-cccCCCCCCEEECCCCC-C
Confidence            99987 555554 677889999999999988653  456789999999998332222 22 34578999999999764 6


Q ss_pred             ceEEEcCCcccccceeeeec
Q 042636          169 KSVIIEKGAMPDIRELGIGP  188 (219)
Q Consensus       169 ~~~~~~~~~~p~L~~L~l~~  188 (219)
                      ++++ ....+++|+.|++.+
T Consensus       191 ~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         191 SDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CBCG-GGTTCTTCSEEEEEE
T ss_pred             CCCh-hhcCCCCCCEEEccC
Confidence            6553 345689999999864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=6.4e-12  Score=97.10  Aligned_cols=68  Identities=22%  Similarity=0.194  Sum_probs=46.8

Q ss_pred             CcccCCcccccccccccccccc-ChHhHH-HHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCC
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA-DSQVLK-ELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASK   71 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~-~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~   71 (219)
                      ++.+|.++.  +++++|++.++ ...+++ ++.++++|++|+++. .....-.+..+.++++|+.|++++|..
T Consensus        22 L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~-n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          22 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccc-ccccccchhhhhCCCccCEecccCCcc
Confidence            356788774  57888988887 555554 578889999998884 222221234467888888998887654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=1.2e-11  Score=89.89  Aligned_cols=162  Identities=16%  Similarity=0.189  Sum_probs=113.9

Q ss_pred             ccccccccccccccChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCcc
Q 042636            9 GSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQ   88 (219)
Q Consensus         9 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~   88 (219)
                      ..+.++++|++.++.....+++..+++|++|+++.  +....+. .++++++|+.|++++|.....   +.+..++ +|+
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~--N~l~~~~-~l~~l~~L~~L~l~~n~~~~~---~~l~~l~-~L~  109 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSN--NQLTDIT-PLKNLTKLVDILMNNNQIADI---TPLANLT-NLT  109 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCS--SCCCCCG-GGTTCTTCCEEECCSSCCCCC---GGGTTCT-TCS
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCcccc--ccccCcc-cccCCcccccccccccccccc---ccccccc-ccc
Confidence            45678888988877222224578899999999995  2222222 378999999999998765443   3345555 999


Q ss_pred             EEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeecccCC
Q 042636           89 RLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVA  167 (219)
Q Consensus        89 ~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  167 (219)
                      .+++++ ..... ..+..+++|+.+++++|++...  ..+..+++|+.|++.++.... + ...+.+++|+.|++.++. 
T Consensus       110 ~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~-l-~~l~~l~~L~~L~ls~N~-  183 (199)
T d2omxa2         110 GLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTD-L-KPLANLTTLERLDISSNK-  183 (199)
T ss_dssp             EEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCCEEECCSSC-
T ss_pred             cccccccccccc-cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccC-C-ccccCCCCCCEEECCCCC-
Confidence            999987 44444 3577899999999999988653  457889999999998332111 2 135678999999999764 


Q ss_pred             cceEEEcCCccccccee
Q 042636          168 VKSVIIEKGAMPDIREL  184 (219)
Q Consensus       168 ~~~~~~~~~~~p~L~~L  184 (219)
                      ++++. ..+.+++|+.|
T Consensus       184 i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         184 VSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CCCCG-GGGGCTTCSEE
T ss_pred             CCCCc-cccCCCCCCcC
Confidence            66543 23456666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.19  E-value=1.4e-11  Score=95.14  Aligned_cols=183  Identities=16%  Similarity=0.183  Sum_probs=112.2

Q ss_pred             CcccCC-cccccccccccccccc-ChHh-HHHHhcccccceeeeee-CC------------------CC-----------
Q 042636            1 VAKVHR-GLGSLMDLQKLSIIEA-DSQV-LKELMKLRQLRKLGIRP-KN------------------GN-----------   47 (219)
Q Consensus         1 i~~lP~-~l~~l~~L~~L~~~~~-~~~~-~~~l~~l~~L~~L~l~~-~~------------------~~-----------   47 (219)
                      |+++|+ .+.++++|++|++.++ ...+ +..+.++++|++|++.+ ..                  +.           
T Consensus        43 i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~  122 (305)
T d1xkua_          43 ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG  122 (305)
T ss_dssp             CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTT
T ss_pred             CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhc
Confidence            467876 5889999999998877 3333 45578888888888764 00                  00           


Q ss_pred             ----------------hhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC-CChhhhcCCCc
Q 042636           48 ----------------GKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNV  109 (219)
Q Consensus        48 ----------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l~~~~~~l~~L  109 (219)
                                      .......+.++++|+.++++++......  ..   ...++++|++.+ .... .+..+..++.+
T Consensus       123 ~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~--~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l  197 (305)
T d1xkua_         123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--QG---LPPSLTELHLDGNKITKVDAASLKGLNNL  197 (305)
T ss_dssp             CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--SS---CCTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred             cccccccccccccccccCCCccccccccccCccccccCCccccC--cc---cCCccCEEECCCCcCCCCChhHhhccccc
Confidence                            0000112345566666666665443221  11   122777887776 3332 45566777888


Q ss_pred             cEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCcceEEEc-------CCcccccc
Q 042636          110 IRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIE-------KGAMPDIR  182 (219)
Q Consensus       110 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~~~p~L~  182 (219)
                      +.|++++|.+...+...+..+++|+.|+++++.. ..++.....+++|+.|++.++. ++.+...       ....++|+
T Consensus       198 ~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L-~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~  275 (305)
T d1xkua_         198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYS  275 (305)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCS
T ss_pred             cccccccccccccccccccccccceeeecccccc-cccccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCC
Confidence            8888888888776666777888888888873321 2233334557888888888643 5544211       11357788


Q ss_pred             eeeeecCC
Q 042636          183 ELGIGPFP  190 (219)
Q Consensus       183 ~L~l~~~~  190 (219)
                      .|++.+++
T Consensus       276 ~L~L~~N~  283 (305)
T d1xkua_         276 GVSLFSNP  283 (305)
T ss_dssp             EEECCSSS
T ss_pred             EEECCCCc
Confidence            88888876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=1.4e-11  Score=91.19  Aligned_cols=171  Identities=16%  Similarity=0.215  Sum_probs=108.3

Q ss_pred             cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL   80 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   80 (219)
                      +.++ +++++++|++|++.++ .... ..+.++++++.+++..  ..... ...++++++|+.++++++.....   ..+
T Consensus        54 ~~l~-~l~~l~~L~~L~ls~n~i~~~-~~l~~l~~l~~l~~~~--n~~~~-i~~l~~l~~L~~l~l~~~~~~~~---~~~  125 (227)
T d1h6ua2          54 TTIE-GVQYLNNLIGLELKDNQITDL-APLKNLTKITELELSG--NPLKN-VSAIAGLQSIKTLDLTSTQITDV---TPL  125 (227)
T ss_dssp             CCCT-TGGGCTTCCEEECCSSCCCCC-GGGTTCCSCCEEECCS--CCCSC-CGGGTTCTTCCEEECTTSCCCCC---GGG
T ss_pred             Ccch-hHhcCCCCcEeecCCceeecc-cccccccccccccccc--ccccc-ccccccccccccccccccccccc---chh
Confidence            4453 5788888888888877 2222 2367788888888774  22222 13467788888888876544332   223


Q ss_pred             CCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccce
Q 042636           81 SSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQI  159 (219)
Q Consensus        81 ~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  159 (219)
                      ...+ .++.+.+.. .+... ..+..+++|+.|++++|.+...  ..++++++|+.|+++++...+ +. ....+++|++
T Consensus       126 ~~~~-~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~  199 (227)
T d1h6ua2         126 AGLS-NLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIE  199 (227)
T ss_dssp             TTCT-TCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCE
T ss_pred             cccc-chhhhhchhhhhchh-hhhccccccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCE
Confidence            3334 777777765 44433 2456778888888888776543  446788888888887332111 21 2346788888


Q ss_pred             eeecccCCcceEEEcCCcccccceeeeec
Q 042636          160 LTLFDFVAVKSVIIEKGAMPDIRELGIGP  188 (219)
Q Consensus       160 L~l~~~~~~~~~~~~~~~~p~L~~L~l~~  188 (219)
                      |++.++. ++.+. +.+.+++|+.|++.+
T Consensus       200 L~Ls~N~-lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         200 VHLKNNQ-ISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             EECTTSC-CCBCG-GGTTCTTCCEEEEEE
T ss_pred             EECcCCc-CCCCc-ccccCCCCCEEEeeC
Confidence            8888763 55543 245678888888763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=3.8e-11  Score=95.10  Aligned_cols=173  Identities=23%  Similarity=0.206  Sum_probs=99.4

Q ss_pred             cccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636            7 GLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ   85 (219)
Q Consensus         7 ~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   85 (219)
                      ....+++++++++.++ ...++ ..+.+++|++|++..  .....+ ..+..+++|+.|+++++......   .+...+ 
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~--n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~-  263 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNG--NQLKDI-GTLASLTNLTDLDLANNQISNLA---PLSGLT-  263 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCS--SCCCCC-GGGGGCTTCSEEECCSSCCCCCG---GGTTCT-
T ss_pred             ccccccccceeeccCCccCCCC-cccccCCCCEEECCC--CCCCCc-chhhcccccchhccccCccCCCC---cccccc-
Confidence            3556667777776665 22222 245677888887774  211221 24567778888888776554432   234444 


Q ss_pred             CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636           86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF  163 (219)
Q Consensus        86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~  163 (219)
                      +|++|+++. .+..++ .+..+..++.++++.+.+...  ..+..+++++.|+++ +...+  +. ....+++|++|++.
T Consensus       264 ~L~~L~l~~~~l~~~~-~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~--l~-~l~~l~~L~~L~L~  337 (384)
T d2omza2         264 KLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISD--IS-PVSSLTKLQRLFFA  337 (384)
T ss_dssp             TCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSC--CG-GGGGCTTCCEEECC
T ss_pred             cCCEeeccCcccCCCC-ccccccccccccccccccccc--cccchhcccCeEECCCCCCCC--Cc-ccccCCCCCEEECC
Confidence            788888876 555554 345566677777766666542  345666777777776 33322  11 23456777777777


Q ss_pred             ccCCcceEEEcCCcccccceeeeecCCCCCcch
Q 042636          164 DFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYI  196 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~  196 (219)
                      ++. ++.++ ..+.+|+|+.|+++++ ++..++
T Consensus       338 ~n~-l~~l~-~l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         338 NNK-VSDVS-SLANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             SSC-CCCCG-GGGGCTTCCEEECCSS-CCCBCG
T ss_pred             CCC-CCCCh-hHcCCCCCCEEECCCC-cCCCCh
Confidence            653 44433 2345677777777665 344443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=1.8e-10  Score=77.19  Aligned_cols=98  Identities=19%  Similarity=0.132  Sum_probs=52.8

Q ss_pred             CeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-
Q 042636           62 ESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-  139 (219)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-  139 (219)
                      |+|++++|+....   +.+.... +|++|++++ .++.+|..+..+++|+.|++++|.+...  ..++.+++|+.|+++ 
T Consensus         1 R~L~Ls~n~l~~l---~~l~~l~-~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVL---CHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSC---CCGGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCC---cccccCC-CCCEEECCCCccCcchhhhhhhhccccccccccccccc--CccccccccCeEECCC
Confidence            4566666554332   2333333 666777766 5666666666667777777777666553  345666777777766 


Q ss_pred             cccCCceEEEccCCCcccceeeeccc
Q 042636          140 GTYNYKLFHFEAGWFPKLQILTLFDF  165 (219)
Q Consensus       140 ~~~~~~~~~~~~~~~~~L~~L~l~~~  165 (219)
                      +....-........+++|+.|++.++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCC
Confidence            32221100011233455666666543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.4e-10  Score=85.10  Aligned_cols=190  Identities=18%  Similarity=0.104  Sum_probs=93.2

Q ss_pred             cccCCcccccccccccccccc-ChHhHH-HHhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCcccccc
Q 042636            2 AKVHRGLGSLMDLQKLSIIEA-DSQVLK-ELMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDLQ   78 (219)
Q Consensus         2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~   78 (219)
                      +.+|.++.  .++++|++.++ ...++. .+.++++|++|+++. +.....+ ...+.++++++++.+..++........
T Consensus        21 ~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~-n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          21 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ-NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             SSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEES-CTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT
T ss_pred             CCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhcc-ccccceeeccccccccccccccccccccccccccc
Confidence            45676654  46788888776 344443 367788888888874 1111111 122456777777777654332222223


Q ss_pred             cCCCcccCccEEEecc-cCCCCCh--hhhcCCCccEEEEeeecCCCCCCccccCC-CccceeeeccccCCceEEEccCCC
Q 042636           79 SLSSPPQYLQRLYLTG-NMKKLPD--WIFKLKNVIRLGLDLSGLTEDPLRVPHAL-PNLLELRLGGTYNYKLFHFEAGWF  154 (219)
Q Consensus        79 ~~~~~~~~L~~L~l~~-~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~  154 (219)
                      .+..++ +|+++.+++ .+...+.  +...++.+..+...++.+...+...+..+ ..+..|++.++.. ..+.......
T Consensus        98 ~~~~l~-~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l-~~i~~~~~~~  175 (242)
T d1xwdc1          98 AFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNCAFNG  175 (242)
T ss_dssp             SEECCT-TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEECTTTTTT
T ss_pred             cccccc-cccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc-cccccccccc
Confidence            344445 788887776 5554432  12233334433433334433323333333 3555566542111 1111111112


Q ss_pred             cccceeeecccCCcceEEEc-CCcccccceeeeecCCCCCcchh
Q 042636          155 PKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFPLWSMYIF  197 (219)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~l~~~~~  197 (219)
                      ++++.+....+..++.++.. ...+++|+.|++.+++ ++.+|.
T Consensus       176 ~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~  218 (242)
T d1xwdc1         176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS  218 (242)
T ss_dssp             CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS
T ss_pred             hhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH
Confidence            33444433334445544322 2346777777777653 555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.2e-11  Score=86.95  Aligned_cols=127  Identities=16%  Similarity=0.147  Sum_probs=84.4

Q ss_pred             HhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhh-hcCC
Q 042636           30 LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWI-FKLK  107 (219)
Q Consensus        30 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~-~~l~  107 (219)
                      +.+..++|+|++++  +....+......+++|++|++++|...+.   +.+...+ +|++|++++ .++.++..+ ..++
T Consensus        14 ~~n~~~lr~L~L~~--n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l---~~~~~l~-~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          14 YTNAVRDRELDLRG--YKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLR-RLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             EECTTSCEEEECTT--SCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCS-SCCEEECCSSCCCEECSCHHHHCT
T ss_pred             ccCcCcCcEEECCC--CCCCccCccccccccCCEEECCCCCCCcc---CCcccCc-chhhhhcccccccCCCcccccccc
Confidence            34566788888884  22222222346678899999998866543   4455566 899999988 777776544 5789


Q ss_pred             CccEEEEeeecCCCC-CCccccCCCccceeeec-cccCCceE--EEccCCCcccceeee
Q 042636          108 NVIRLGLDLSGLTED-PLRVPHALPNLLELRLG-GTYNYKLF--HFEAGWFPKLQILTL  162 (219)
Q Consensus       108 ~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~-~~~~~~~~--~~~~~~~~~L~~L~l  162 (219)
                      +|+.|++++|.+... +...+..+++|++|+++ +......-  ......+|+|+.|+-
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            999999999988764 34567889999999998 43321100  011234677777653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=5.8e-11  Score=79.62  Aligned_cols=81  Identities=16%  Similarity=0.166  Sum_probs=47.8

Q ss_pred             HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCC-CccccCCCc
Q 042636           55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDP-LRVPHALPN  132 (219)
Q Consensus        55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~  132 (219)
                      +.++++|++|++++|...+..  +.+..++ +|+.|++++ .++.+| .+..+++|+++++++|.+...+ ...+..+++
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp--~~~~~l~-~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALP--PALAALR-CLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR   91 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCC--GGGGGCT-TCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             cccCCCCCEEECCCCccCcch--hhhhhhh-cccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCC
Confidence            455666666666665543321  2334444 666666666 555554 3566667777777776665532 345566677


Q ss_pred             cceeeec
Q 042636          133 LLELRLG  139 (219)
Q Consensus       133 L~~L~l~  139 (219)
                      |+.|+++
T Consensus        92 L~~L~l~   98 (124)
T d1dcea3          92 LVLLNLQ   98 (124)
T ss_dssp             CCEEECT
T ss_pred             CCEEECC
Confidence            7777766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.4e-11  Score=83.56  Aligned_cols=128  Identities=16%  Similarity=0.061  Sum_probs=80.4

Q ss_pred             hccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccc
Q 042636           56 ANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLL  134 (219)
Q Consensus        56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  134 (219)
                      .+..++++|++++|........  ....+ +|+.|++++ .++.++ .+..+++|++|++++|.+...+...+..+++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~--~~~l~-~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENL--GATLD-QFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCG--GGGTT-CCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCccCcc--ccccc-cCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            4556788888888766544221  12334 888888887 676664 466788888888888888765555566788888


Q ss_pred             eeeec-cccCCceEEEccCCCcccceeeecccCCcceEE----EcCCcccccceeeeec
Q 042636          135 ELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVI----IEKGAMPDIRELGIGP  188 (219)
Q Consensus       135 ~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~p~L~~L~l~~  188 (219)
                      .|+++ +....-.-......+++|++|++.+++. ...+    .....+|+|+.|+-..
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i-~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             cceeccccccccccccccccccccchhhcCCCcc-ccccchHHHHHHHCCCcCeeCCCC
Confidence            88887 4332210011234578888888887652 2211    0123467777776443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.92  E-value=1.2e-09  Score=86.13  Aligned_cols=168  Identities=20%  Similarity=0.236  Sum_probs=116.9

Q ss_pred             cccccccccccccccChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636            8 LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL   87 (219)
Q Consensus         8 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L   87 (219)
                      .+.+.+|++|++.++....++.+..+++|+.+++.. + ....+ ..+..+++|+.|+++++......   .+...+ .+
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~-n-~l~~~-~~~~~~~~L~~L~l~~~~l~~~~---~~~~~~-~l  287 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN-N-QISNL-APLSGLTKLTELKLGANQISNIS---PLAGLT-AL  287 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS-S-CCCCC-GGGTTCTTCSEEECCSSCCCCCG---GGTTCT-TC
T ss_pred             ccccCCCCEEECCCCCCCCcchhhcccccchhcccc-C-ccCCC-CcccccccCCEeeccCcccCCCC---cccccc-cc
Confidence            455678888888777222224577889999999884 1 11111 23678899999999887665443   333444 78


Q ss_pred             cEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeecccC
Q 042636           88 QRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFV  166 (219)
Q Consensus        88 ~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  166 (219)
                      +.+.+.. .++.++ .+..+++++.+++++|.+.+.  ..+..+++|+.|+++++.... +. ....+++|++|++.++.
T Consensus       288 ~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l--~~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         288 TNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             SEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCC--GGGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccc-ccchhcccCeEECCCCCCCCC--cccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCc
Confidence            8888876 566544 577889999999999988764  347889999999998332222 22 24568899999998654


Q ss_pred             CcceEEEcCCcccccceeeeecC
Q 042636          167 AVKSVIIEKGAMPDIRELGIGPF  189 (219)
Q Consensus       167 ~~~~~~~~~~~~p~L~~L~l~~~  189 (219)
                       +.++. +...+++|+.|+++++
T Consensus       363 -l~~l~-~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         363 -ISDLT-PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             -CCBCG-GGTTCTTCSEEECCCE
T ss_pred             -CCCCh-hhccCCCCCEeeCCCC
Confidence             55543 3466899999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.90  E-value=6.8e-13  Score=96.61  Aligned_cols=110  Identities=22%  Similarity=0.245  Sum_probs=81.6

Q ss_pred             ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCCh
Q 042636           23 DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPD  101 (219)
Q Consensus        23 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~  101 (219)
                      ....+..+..+++|++|+++.  +....+ ..+.++++|+.|++++|.....   +.+.....+|+.|++++ .++.++ 
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~--n~I~~i-~~l~~l~~L~~L~Ls~N~i~~i---~~~~~~~~~L~~L~l~~N~i~~l~-  109 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALST--NNIEKI-SSLSGMENLRILSLGRNLIKKI---ENLDAVADTLEELWISYNQIASLS-  109 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSE--EEESCC-CCHHHHTTCCEEECCEEEECSC---SSHHHHHHHCCEEECSEEECCCHH-
T ss_pred             hhhhhhHHhcccccceeECcc--cCCCCc-ccccCCccccChhhcccccccc---cccccccccccccccccccccccc-
Confidence            345667899999999999986  111222 2367889999999999865433   22222222799999998 777764 


Q ss_pred             hhhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec
Q 042636          102 WIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG  139 (219)
Q Consensus       102 ~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~  139 (219)
                      .+..+++|+.|++++|.+...+ ...+..+++|+.|+++
T Consensus       110 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~  148 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred             cccccccccccccccchhccccccccccCCCccceeecC
Confidence            4678899999999999997643 3567899999999998

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6e-10  Score=82.85  Aligned_cols=191  Identities=16%  Similarity=0.111  Sum_probs=110.6

Q ss_pred             CcccCCc-ccccccccccccccc--ChHh-HHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccc
Q 042636            1 VAKVHRG-LGSLMDLQKLSIIEA--DSQV-LKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILD   76 (219)
Q Consensus         1 i~~lP~~-l~~l~~L~~L~~~~~--~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~   76 (219)
                      |..+|.+ +.++++|++|++.++  ...+ +..+.++++++++.+.............+.++++|++++++++.......
T Consensus        41 i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~  120 (242)
T d1xwdc1          41 LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD  120 (242)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC
T ss_pred             CCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhccccc
Confidence            4567775 789999999999887  2223 23467788999888763122222233456889999999999986644322


Q ss_pred             cccCCCcccCccEEEecc-cCCCCC-hhhhcC-CCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEE-ccC
Q 042636           77 LQSLSSPPQYLQRLYLTG-NMKKLP-DWIFKL-KNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHF-EAG  152 (219)
Q Consensus        77 ~~~~~~~~~~L~~L~l~~-~~~~l~-~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~  152 (219)
                      ...+.... .+..+.... .+..++ ..+..+ ..++.++++++.+....... ...+++..+....+..-..+.. ...
T Consensus       121 ~~~~~~l~-~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l~~l~~~~f~  198 (242)
T d1xwdc1         121 VHKIHSLQ-KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNNNLEELPNDVFH  198 (242)
T ss_dssp             CTTTCBSS-CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCTTCCCCCTTTTT
T ss_pred             cccccccc-ccccccccccccccccccccccccccceeeeccccccccccccc-ccchhhhccccccccccccccHHHhc
Confidence            22222221 333333333 344433 233333 47888999888887643333 3456665555432211122322 134


Q ss_pred             CCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcch
Q 042636          153 WFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYI  196 (219)
Q Consensus       153 ~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~  196 (219)
                      ++++|+.|++.++. ++.++  .+.+.+|..|...++.+++.+|
T Consensus       199 ~l~~L~~L~Ls~N~-l~~l~--~~~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         199 GASGPVILDISRTR-IHSLP--SYGLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             TSCCCSEEECTTSC-CCCCC--SSSCTTCCEEESSSEESSSCSC
T ss_pred             CCCCCCEEECCCCc-CCccC--HHHHcCCcccccCcCCCCCcCC
Confidence            67899999998754 55443  3445666555555555555555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.86  E-value=2.3e-09  Score=77.04  Aligned_cols=103  Identities=18%  Similarity=0.177  Sum_probs=58.7

Q ss_pred             cccceeeeeeCCCChh-HHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCCh-hhhcCCCcc
Q 042636           34 RQLRKLGIRPKNGNGK-DVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVI  110 (219)
Q Consensus        34 ~~L~~L~l~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~  110 (219)
                      +++++|+++. +.... .-...+.++++|++|+++++...... ...+...+ +|++|++++ .++.+|. ++..+++|+
T Consensus        29 ~~l~~L~Ls~-N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~-~L~~L~Ls~N~l~~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          29 LHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCCEEEeCC-CCCcccccccccCCCceEeeeecccccccccc-cccccccc-ccceeeeccccccccCHHHHhCCCccc
Confidence            4666777663 11111 11223456667777777665544332 23333444 677777766 5555443 355667777


Q ss_pred             EEEEeeecCCCCCCccccCCCccceeeec
Q 042636          111 RLGLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus       111 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      +|++++|++...+...+..+++|++|+++
T Consensus       106 ~L~L~~N~l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_         106 TLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             ccccCCccccccCHHHhcCCccccccccc
Confidence            77777777666555666667777777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.81  E-value=5.9e-10  Score=80.22  Aligned_cols=117  Identities=14%  Similarity=0.084  Sum_probs=87.6

Q ss_pred             CcccCCcccccccccccccccc-C-hHh-HHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccc
Q 042636            1 VAKVHRGLGSLMDLQKLSIIEA-D-SQV-LKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDL   77 (219)
Q Consensus         1 i~~lP~~l~~l~~L~~L~~~~~-~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~   77 (219)
                      ++.||.++.  .++++|++.++ . ... ...++++++|++|+++. +.........+..+++|++|++++|...... .
T Consensus        20 L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~-N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~-~   95 (192)
T d1w8aa_          20 LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLGENKIKEIS-N   95 (192)
T ss_dssp             CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-S
T ss_pred             cCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccc-cccccccccccccccccceeeeccccccccC-H
Confidence            357888775  68899999988 3 223 34578999999999984 2222333455678899999999998775543 3


Q ss_pred             ccCCCcccCccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCC
Q 042636           78 QSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTED  122 (219)
Q Consensus        78 ~~~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~  122 (219)
                      ..+.+.+ +|++|++++ .++.+| .++..+++|+++++++|.+..+
T Consensus        96 ~~F~~l~-~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          96 KMFLGLH-QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SSSTTCT-TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             HHHhCCC-cccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            4566666 999999998 788765 4567899999999999887654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.78  E-value=1.7e-11  Score=89.10  Aligned_cols=126  Identities=17%  Similarity=0.055  Sum_probs=89.0

Q ss_pred             ccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEE
Q 042636           35 QLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLG  113 (219)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~  113 (219)
                      ..+.+++.........+..+++++++|++|++++|.....   +.+..++ +|+.|++++ .++.+|.....+++|+.|+
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i---~~l~~l~-~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI---SSLSGME-NLRILSLGRNLIKKIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCC---CCHHHHT-TCCEEECCEEEECSCSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCc---ccccCCc-cccChhhcccccccccccccccccccccc
Confidence            3445555431223345567789999999999998865443   3455555 999999998 7888886666677899999


Q ss_pred             EeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636          114 LDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV  166 (219)
Q Consensus       114 l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~  166 (219)
                      +++|.+...  ..+..+++|+.|+++ +....-........+++|+.|++.+++
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            999998763  457788999999998 443221001124568999999998754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.2e-07  Score=64.17  Aligned_cols=83  Identities=24%  Similarity=0.306  Sum_probs=36.9

Q ss_pred             HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCc
Q 042636           55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPN  132 (219)
Q Consensus        55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  132 (219)
                      +.++++|++|++.++......+...+.+++ +|+.|++++ .++.+ +..+..+++|++|++++|++...+...+..+ +
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~  104 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-S  104 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-C
T ss_pred             ccCccccCeeecCCCccccccCchhhcccc-ccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-c
Confidence            334444555544433322222223334444 555555554 44443 2334455555555555555554433333322 3


Q ss_pred             cceeeec
Q 042636          133 LLELRLG  139 (219)
Q Consensus       133 L~~L~l~  139 (219)
                      |+.|+++
T Consensus       105 l~~L~L~  111 (156)
T d2ifga3         105 LQELVLS  111 (156)
T ss_dssp             CCEEECC
T ss_pred             ccccccC
Confidence            5555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=8.2e-07  Score=61.20  Aligned_cols=102  Identities=21%  Similarity=0.152  Sum_probs=64.3

Q ss_pred             CCCeEEEEecCCCcccccccCCCcccCccEEEecc--cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636           60 NLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG--NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL  136 (219)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  136 (219)
                      ..+.++..++...+.  ...+.+.+ ++++|++.+  .++.++. .+..+++|+.|++++|.+...+..++..+++|+.|
T Consensus         9 ~~~~l~c~~~~~~~~--p~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           9 GSSGLRCTRDGALDS--LHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SSSCEECCSSCCCTT--TTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CCCeEEecCCCCccC--cccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            345555554443332  33445555 888888865  4666653 46778888889988888877666778888888888


Q ss_pred             eec-cccCCceEEEccCCCcccceeeecccC
Q 042636          137 RLG-GTYNYKLFHFEAGWFPKLQILTLFDFV  166 (219)
Q Consensus       137 ~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~  166 (219)
                      +++ +...  .+.........|++|++.+++
T Consensus        86 ~Ls~N~l~--~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          86 NLSFNALE--SLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             ECCSSCCS--CCCSTTTCSCCCCEEECCSSC
T ss_pred             eccCCCCc--ccChhhhccccccccccCCCc
Confidence            887 4432  122222223467777777544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.20  E-value=3e-07  Score=71.51  Aligned_cols=87  Identities=15%  Similarity=0.086  Sum_probs=45.6

Q ss_pred             hhcCCCccEEEEeeecCCCCC-----CccccCCCccceeeec-cccCCce---EEEccCCCcccceeeecccCCcceEE-
Q 042636          103 IFKLKNVIRLGLDLSGLTEDP-----LRVPHALPNLLELRLG-GTYNYKL---FHFEAGWFPKLQILTLFDFVAVKSVI-  172 (219)
Q Consensus       103 ~~~l~~L~~L~l~~~~~~~~~-----~~~l~~l~~L~~L~l~-~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-  172 (219)
                      +...+.++.++++.|.+....     ...+...++|+.|+++ +.+....   +.......++|++|.+.+|. ++... 
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~  260 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGA  260 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc-cCchhh
Confidence            345667777777777765421     1234567777777776 3321110   11112235677777777654 22110 


Q ss_pred             ------EcCCcccccceeeeecCC
Q 042636          173 ------IEKGAMPDIRELGIGPFP  190 (219)
Q Consensus       173 ------~~~~~~p~L~~L~l~~~~  190 (219)
                            +.....+.|+.|+++++.
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHHHHhhhccCCCCCEEECCCCc
Confidence                  011123567777777754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.96  E-value=9.5e-06  Score=62.27  Aligned_cols=94  Identities=17%  Similarity=0.175  Sum_probs=52.1

Q ss_pred             cccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEE
Q 042636           13 DLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLY   91 (219)
Q Consensus        13 ~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~   91 (219)
                      ++++|+++++ ...+|+   ..++|++|++++  +....+++   ...+|+.|++.++.....   +   ..+..|++|+
T Consensus        39 ~l~~LdLs~~~L~~lp~---~~~~L~~L~Ls~--N~l~~lp~---~~~~L~~L~l~~n~l~~l---~---~lp~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE---LPPHLESLVASC--NSLTELPE---LPQSLKSLLVDNNNLKAL---S---DLPPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCSCCCS---CCTTCSEEECCS--SCCSSCCC---CCTTCCEEECCSSCCSCC---C---SCCTTCCEEE
T ss_pred             CCCEEEeCCCCCCCCCC---CCCCCCEEECCC--CCCccccc---chhhhhhhhhhhcccchh---h---hhcccccccc
Confidence            4566666655 334442   245677777763  22223322   234677777766544322   1   2233677777


Q ss_pred             ecc-cCCCCChhhhcCCCccEEEEeeecCCC
Q 042636           92 LTG-NMKKLPDWIFKLKNVIRLGLDLSGLTE  121 (219)
Q Consensus        92 l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~  121 (219)
                      +++ .++.+|. ...+++|+.++++++.+..
T Consensus       105 L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         105 VSNNQLEKLPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CCSSCCSSCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             ccccccccccc-hhhhccceeeccccccccc
Confidence            776 6666663 4566777777776665543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.95  E-value=5.4e-07  Score=70.01  Aligned_cols=117  Identities=20%  Similarity=0.096  Sum_probs=69.8

Q ss_pred             CccEEEecc-cCCC------CChhhhcCCCccEEEEeeecCCCCC----CccccCCCccceeeeccc-cCCceEE-----
Q 042636           86 YLQRLYLTG-NMKK------LPDWIFKLKNVIRLGLDLSGLTEDP----LRVPHALPNLLELRLGGT-YNYKLFH-----  148 (219)
Q Consensus        86 ~L~~L~l~~-~~~~------l~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~-~~~~~~~-----  148 (219)
                      .++.|+++. .+..      +...+...++|+.|++++|.+....    ...+..+++|++|+++++ .......     
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~  266 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  266 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHH
Confidence            688888865 4332      1223456789999999999875432    234668899999999843 3221111     


Q ss_pred             EccCCCcccceeeecccCCcceE-----EEc-CCcccccceeeeecCCCCCcchhHHhhhhh
Q 042636          149 FEAGWFPKLQILTLFDFVAVKSV-----IIE-KGAMPDIRELGIGPFPLWSMYIFLTDHILD  204 (219)
Q Consensus       149 ~~~~~~~~L~~L~l~~~~~~~~~-----~~~-~~~~p~L~~L~l~~~~~l~~~~~~~~~l~~  204 (219)
                      ......+.|++|++.++. ++.-     .-. ....++|+.|++.++. .++-..++..+..
T Consensus       267 l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~-~~~~~~~~~~l~~  326 (344)
T d2ca6a1         267 FSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIRE  326 (344)
T ss_dssp             HHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHH
T ss_pred             hhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc-CCCcchHHHHHHH
Confidence            111235789999999764 3321     000 1136889999998854 3333334444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.3e-06  Score=67.14  Aligned_cols=107  Identities=23%  Similarity=0.233  Sum_probs=70.3

Q ss_pred             cccccccccc---ChHhHHHHhcccccceeeeeeCCCCh----hHHHHHHhccCCCCeEEEEecCCCccc--c-cccCCC
Q 042636           13 DLQKLSIIEA---DSQVLKELMKLRQLRKLGIRPKNGNG----KDVCALIANLENLESLTVLMASKDEIL--D-LQSLSS   82 (219)
Q Consensus        13 ~L~~L~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~--~-~~~~~~   82 (219)
                      +|++|++.++   ...+.+-+..++++|+|++.. +...    ..+...+..+++|++|++++|......  . ...+..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~-~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDD-CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEES-SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCC-CCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            6788888776   333455567788999999985 3222    345566778899999999887553211  1 122222


Q ss_pred             cccCccEEEecc-cCCC-----CChhhhcCCCccEEEEeeecCC
Q 042636           83 PPQYLQRLYLTG-NMKK-----LPDWIFKLKNVIRLGLDLSGLT  120 (219)
Q Consensus        83 ~~~~L~~L~l~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~  120 (219)
                      ...+|++|+++. .++.     ++..+..+++|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            223799999987 5543     2344567789999999888764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.70  E-value=4.7e-05  Score=58.24  Aligned_cols=90  Identities=24%  Similarity=0.210  Sum_probs=62.4

Q ss_pred             cccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEE
Q 042636           34 RQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRL  112 (219)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L  112 (219)
                      .++++|+++.  .....+++   -.++|++|++++|...+.   +.   ...+|++|++.+ .++.++.   ..+.|++|
T Consensus        38 ~~l~~LdLs~--~~L~~lp~---~~~~L~~L~Ls~N~l~~l---p~---~~~~L~~L~l~~n~l~~l~~---lp~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNN--LGLSSLPE---LPPHLESLVASCNSLTEL---PE---LPQSLKSLLVDNNNLKALSD---LPPLLEYL  103 (353)
T ss_dssp             HTCSEEECTT--SCCSCCCS---CCTTCSEEECCSSCCSSC---CC---CCTTCCEEECCSSCCSCCCS---CCTTCCEE
T ss_pred             cCCCEEEeCC--CCCCCCCC---CCCCCCEEECCCCCCccc---cc---chhhhhhhhhhhcccchhhh---hccccccc
Confidence            4688998884  22233332   246899999998765433   22   123899999987 6666652   23579999


Q ss_pred             EEeeecCCCCCCccccCCCccceeeec
Q 042636          113 GLDLSGLTEDPLRVPHALPNLLELRLG  139 (219)
Q Consensus       113 ~l~~~~~~~~~~~~l~~l~~L~~L~l~  139 (219)
                      ++++|.+...+  ..+.+++|+.|++.
T Consensus       104 ~L~~n~l~~lp--~~~~l~~L~~L~l~  128 (353)
T d1jl5a_         104 GVSNNQLEKLP--ELQNSSFLKIIDVD  128 (353)
T ss_dssp             ECCSSCCSSCC--CCTTCTTCCEEECC
T ss_pred             ccccccccccc--chhhhccceeeccc
Confidence            99999887653  35678999999987

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=8.8e-07  Score=61.42  Aligned_cols=64  Identities=27%  Similarity=0.287  Sum_probs=29.9

Q ss_pred             hccCCCCeEEEEecCCCccccccc-CCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCC
Q 042636           56 ANLENLESLTVLMASKDEILDLQS-LSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLT  120 (219)
Q Consensus        56 ~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~  120 (219)
                      .++++|++|++++|......++.. +...+ +|+.|++++ .++.++.. .....+|+.+++++|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~-~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHST-TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCC-cccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            456777777777765543322111 11122 555555555 44443321 112234555555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=2.8e-05  Score=53.48  Aligned_cols=82  Identities=16%  Similarity=0.213  Sum_probs=53.6

Q ss_pred             Hhcccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCCh------
Q 042636           30 LMKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPD------  101 (219)
Q Consensus        30 l~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~------  101 (219)
                      ..++++|++|++++ .-.....+...+.++++|+.|++++|...+..+...+. .. +++++++.+ .+.....      
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~-~~-~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT-TC-CCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhh-cc-ccceeecCCCCcCcCcccchhHH
Confidence            35789999999996 22223344556778999999999998876654433332 33 788899987 5543211      


Q ss_pred             --hhhcCCCccEEE
Q 042636          102 --WIFKLKNVIRLG  113 (219)
Q Consensus       102 --~~~~l~~L~~L~  113 (219)
                        .+..+++|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence              134566676654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=6.5e-05  Score=59.38  Aligned_cols=105  Identities=20%  Similarity=0.207  Sum_probs=71.1

Q ss_pred             cccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccc--c-cccCCCcccCccEEEecc-cCCC-----CChhhh
Q 042636           34 RQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEIL--D-LQSLSSPPQYLQRLYLTG-NMKK-----LPDWIF  104 (219)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~-~~~~~~~~~~L~~L~l~~-~~~~-----l~~~~~  104 (219)
                      ++|++|++++..-....+.+.+..++++++|++++|+.....  . ...+...+ +|++|++++ .++.     +...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~-~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCC-CCCEEECcCCcCChHHHHHHHHHHh
Confidence            478999999522233455666788899999999998764321  1 12234455 899999987 5532     111221


Q ss_pred             -cCCCccEEEEeeecCCCCCC----ccccCCCccceeeec
Q 042636          105 -KLKNVIRLGLDLSGLTEDPL----RVPHALPNLLELRLG  139 (219)
Q Consensus       105 -~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~  139 (219)
                       ...+|++|++++|.+.+...    ..+..+++|++|+++
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~  120 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS  120 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECC
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccc
Confidence             23479999999998876432    345678999999997

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.84  E-value=0.00019  Score=49.46  Aligned_cols=17  Identities=6%  Similarity=0.169  Sum_probs=9.4

Q ss_pred             hcCCCccEEEEeeecCC
Q 042636          104 FKLKNVIRLGLDLSGLT  120 (219)
Q Consensus       104 ~~l~~L~~L~l~~~~~~  120 (219)
                      ..-++|++|+++++.+.
T Consensus        97 ~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          97 LVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             TTTCCCSEEECCCCSSC
T ss_pred             HhCCcCCEEECCCCcCC
Confidence            33455666666655443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.38  E-value=0.00057  Score=46.76  Aligned_cols=12  Identities=17%  Similarity=0.180  Sum_probs=6.8

Q ss_pred             cCCCccceeeec
Q 042636          128 HALPNLLELRLG  139 (219)
Q Consensus       128 ~~l~~L~~L~l~  139 (219)
                      ...++|+.|++.
T Consensus       129 ~~n~~L~~L~l~  140 (166)
T d1io0a_         129 EKNTTLLKFGYH  140 (166)
T ss_dssp             HHCSSCCEEECC
T ss_pred             HhCCCcCEEeCc
Confidence            345666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.12  E-value=0.00036  Score=47.93  Aligned_cols=36  Identities=17%  Similarity=0.168  Sum_probs=19.3

Q ss_pred             hcCCCccEEEEeeecCCCCCC----ccccCCCccceeeec
Q 042636          104 FKLKNVIRLGLDLSGLTEDPL----RVPHALPNLLELRLG  139 (219)
Q Consensus       104 ~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~  139 (219)
                      ...+.|++|++++|.+.....    .++..-+.|++|++.
T Consensus        69 ~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~  108 (167)
T d1pgva_          69 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKAD  108 (167)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred             hhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECC
Confidence            344556666666666554321    234445666666665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.77  E-value=0.0029  Score=42.97  Aligned_cols=9  Identities=11%  Similarity=0.050  Sum_probs=4.2

Q ss_pred             cccceeeec
Q 042636          155 PKLQILTLF  163 (219)
Q Consensus       155 ~~L~~L~l~  163 (219)
                      +.|++|++.
T Consensus       132 ~~L~~L~l~  140 (166)
T d1io0a_         132 TTLLKFGYH  140 (166)
T ss_dssp             SSCCEEECC
T ss_pred             CCcCEEeCc
Confidence            445555443