Citrus Sinensis ID: 042638

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKKEGTFHLNQMQQDQE
Secondary Structure (PSIPRED)
ccccccEEEccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHEEEcccccEEEEEEEEEEcccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccEEEEEEEEEcccccEEEcccccccc
Coil and Loop (DISEMBL)
ghcpgwqavpvhdpqvqdAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKKEGTFHLNQMQQDQE
Flexible Loop (DISEMBL)
ghcpgwqavpVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVkrgekeeklnvevhkkegtfhlnqmqqdqe
Low Complexity Region (SEG)
GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKKEGTFHLNQMQQDQE
Disordered region (IsUnstruct)
*********************HAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVK*****************************
Disordered Region (DISOPRED)
****GWQ*VPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKL*VEVHKKEGTF**********
Disordered Region (DISEMBL)
GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKKEGTFHL********
Disordered Region (DISPRO)
*****WQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKKEGTFHLNQ******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKKEGTFHLNQMQQDQE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
Q0JNR2	250	Cysteine proteinase inhib	yes	no	1.0	0.368	0.698	4e-32
Q8H0X6	234	Cysteine proteinase inhib	no	no	0.956	0.376	0.629	2e-24
Q8LC76	232	Cysteine proteinase inhib	no	no	0.836	0.331	0.506	6e-17

>sp|Q0JNR2|CYT12_ORYSJ Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100 PE=2 SV=1

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 77/93 (82%), Gaps = 1/93 (1%)

Query: 1   GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLL 60
           GH PGW+ VPVHDP V+DAA+HA+++IQQRSNSLFPY L EIV AKAEV+EDFAKF +L+
Sbjct: 153 GHEPGWRDVPVHDPVVKDAADHAVKSIQQRSNSLFPYELLEIVRAKAEVVEDFAKFDILM 212

Query: 61  KVKRGEKEEKLNVEVHKK-EGTFHLNQMQQDQE 92
           K+KRG KEEK   EVHK  EG F LNQMQQ+ +
Sbjct: 213 KLKRGNKEEKFKAEVHKNLEGAFVLNQMQQEHD 245

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H0X6|CYT6_ARATH Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 66/89 (74%), Gaps = 1/89 (1%)

Query: 2   HCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLK 61
           H  GW+ VP  DP+V+  A  A++TIQQRSNSLFPY L E+VHAKAEV  + AK+ MLLK
Sbjct: 143 HESGWREVPGDDPEVKHVAEQAVKTIQQRSNSLFPYELLEVVHAKAEVTGEAAKYNMLLK 202

Query: 62  VKRGEKEEKLNVEVHKK-EGTFHLNQMQQ 89
           +KRGEKEEK  VEVHK  EG  HLN  +Q
Sbjct: 203 LKRGEKEEKFKVEVHKNHEGALHLNHAEQ 231

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC76|CYT7_ARATH Cysteine proteinase inhibitor 7 OS=Arabidopsis thaliana GN=CYS7 PE=2 SV=2

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 60/77 (77%)

Query: 1   GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLL 60
           G+   W++V  ++P+VQ+AA HA++++QQ+SNSLFPY L +I+ A+A+V+E+  KF +LL
Sbjct: 149 GNGFDWRSVSTNNPEVQEAAKHAMKSLQQKSNSLFPYKLIDIILARAKVVEERVKFELLL 208

Query: 61  KVKRGEKEEKLNVEVHK 77
           K++RG K EK  VEV K
Sbjct: 209 KLERGNKLEKFMVEVMK 225

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
255647357	245	unknown [Glycine max]	0.978	0.367	0.769	2e-33
351721816	245	cysteine proteinase inhibitor precursor	0.978	0.367	0.769	2e-33
388507310	237	unknown [Lotus japonicus]	0.978	0.379	0.758	8e-33
357515449	241	Cysteine proteinase inhibitor [Medicago	0.978	0.373	0.758	2e-32
351720760	245	uncharacterized protein LOC100499887 pre	0.978	0.367	0.758	2e-32
388492618	241	unknown [Medicago truncatula]	0.978	0.373	0.747	8e-32
27752377	246	cysteine protease inhibitor cystatin [Ma	0.978	0.365	0.736	1e-31
224073041	235	predicted protein [Populus trichocarpa]	0.956	0.374	0.730	8e-31
115435888	250	Os01g0270100 [Oryza sativa Japonica Grou	1.0	0.368	0.698	2e-30
192910880	204	cysteine proteinase inhibitor [Elaeis gu	0.967	0.436	0.744	2e-30

>gi|255647357|gb|ACU24145.1| unknown [Glycine max]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 78/91 (85%), Gaps = 1/91 (1%)

Query: 1   GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLL 60
           GH PGWQ+VP HDPQVQDAANHAI+TIQQRSNSL PY L E+  AKAEVI+DFAKF +LL
Sbjct: 153 GHQPGWQSVPTHDPQVQDAANHAIKTIQQRSNSLVPYELHEVADAKAEVIDDFAKFNLLL 212

Query: 61  KVKRGEKEEKLNVEVHK-KEGTFHLNQMQQD 90
           KVKRG+KEEK  VEVHK  +G FHLNQM+QD
Sbjct: 213 KVKRGQKEEKFKVEVHKNNQGGFHLNQMEQD 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721816|ref|NP_001237734.1| cysteine proteinase inhibitor precursor [Glycine max] gi|1944319|dbj|BAA19608.1| cysteine proteinase inhibitor [Glycine max] gi|1944342|dbj|BAA19610.1| cysteine proteinase inhibitor [Glycine max]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 78/91 (85%), Gaps = 1/91 (1%)

Query: 1   GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLL 60
           GH PGWQ+VP HDPQVQDAANHAI+TIQQRSNSL PY L E+  AKAEVI+DFAKF +LL
Sbjct: 153 GHQPGWQSVPTHDPQVQDAANHAIKTIQQRSNSLVPYELHEVADAKAEVIDDFAKFNLLL 212

Query: 61  KVKRGEKEEKLNVEVHK-KEGTFHLNQMQQD 90
           KVKRG+KEEK  VEVHK  +G FHLNQM+QD
Sbjct: 213 KVKRGQKEEKFKVEVHKNNQGGFHLNQMEQD 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507310|gb|AFK41721.1| unknown [Lotus japonicus]

 Score =  144 bits (362), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 69/91 (75%), Positives = 78/91 (85%), Gaps = 1/91 (1%)

Query: 1   GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLL 60
           GH PGWQ+VP+ DPQVQDAANHAI+TIQQRSNSL PY L E+  AKAEVI+D AKF +LL
Sbjct: 145 GHKPGWQSVPIDDPQVQDAANHAIKTIQQRSNSLVPYELHEVADAKAEVIDDVAKFNILL 204

Query: 61  KVKRGEKEEKLNVEVHK-KEGTFHLNQMQQD 90
           K+KRGEKEEK  VEVHK  EG+FHLNQM+QD
Sbjct: 205 KLKRGEKEEKFKVEVHKNNEGSFHLNQMEQD 235

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515449|ref|XP_003628013.1| Cysteine proteinase inhibitor [Medicago truncatula] gi|355522035|gb|AET02489.1| Cysteine proteinase inhibitor [Medicago truncatula]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/91 (75%), Positives = 76/91 (83%), Gaps = 1/91 (1%)

Query: 1   GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLL 60
           GH PGWQ+VP HDPQVQDAANHAI+TIQQRSNSL PY L E+  AKAEVI+D AKF +LL
Sbjct: 149 GHKPGWQSVPAHDPQVQDAANHAIKTIQQRSNSLVPYELHEVTDAKAEVIDDTAKFNLLL 208

Query: 61  KVKRGEKEEKLNVEVHK-KEGTFHLNQMQQD 90
           KVKRG+KEEK  VEVHK  EG FHLNQM+ D
Sbjct: 209 KVKRGQKEEKFKVEVHKNSEGNFHLNQMEAD 239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720760|ref|NP_001237443.1| uncharacterized protein LOC100499887 precursor [Glycine max] gi|255627437|gb|ACU14063.1| unknown [Glycine max]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/91 (75%), Positives = 77/91 (84%), Gaps = 1/91 (1%)

Query: 1   GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLL 60
           GH PGWQ+VP HDPQVQDAANHAI+TIQQRSNSL PY L E+  AKAEVI+DFAKF +LL
Sbjct: 153 GHQPGWQSVPTHDPQVQDAANHAIKTIQQRSNSLVPYELHEVADAKAEVIDDFAKFNLLL 212

Query: 61  KVKRGEKEEKLNVEVHK-KEGTFHLNQMQQD 90
           KVKRG+KEEK  VEVHK  +  FHLNQM+QD
Sbjct: 213 KVKRGQKEEKFKVEVHKNNQRGFHLNQMEQD 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492618|gb|AFK34375.1| unknown [Medicago truncatula]

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/91 (74%), Positives = 75/91 (82%), Gaps = 1/91 (1%)

Query: 1   GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLL 60
           GH PGWQ+VP HDPQVQDAANHAI+TIQQRSNSL PY L E+  AKAEVI+D AKF +LL
Sbjct: 149 GHKPGWQSVPAHDPQVQDAANHAIKTIQQRSNSLVPYELHEVTDAKAEVIDDTAKFNLLL 208

Query: 61  KVKRGEKEEKLNVEVHK-KEGTFHLNQMQQD 90
           KVKRG+KEEK  VEVHK  E  FHLNQM+ D
Sbjct: 209 KVKRGQKEEKFKVEVHKNSESNFHLNQMEAD 239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27752377|gb|AAO19652.1| cysteine protease inhibitor cystatin [Malus x domestica]

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/91 (73%), Positives = 76/91 (83%), Gaps = 1/91 (1%)

Query: 1   GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLL 60
           GH PGWQ+VP HDPQVQDAANHA++++QQRSNSL PY LQE+VHA+AEV E+ AKF MLL
Sbjct: 154 GHPPGWQSVPPHDPQVQDAANHAVKSLQQRSNSLLPYELQEVVHAQAEVAEEHAKFNMLL 213

Query: 61  KVKRGEKEEKLNVEVHKK-EGTFHLNQMQQD 90
           KVKRG KEEK   EVHK  EGTF LNQM+ D
Sbjct: 214 KVKRGSKEEKFKAEVHKNMEGTFSLNQMEAD 244

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073041|ref|XP_002303955.1| predicted protein [Populus trichocarpa] gi|222841387|gb|EEE78934.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 74/89 (83%), Gaps = 1/89 (1%)

Query: 1   GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLL 60
           GH PGW+AVPVHDP VQDAA HA+++IQQRSNSLFPY LQE+VHA AEV++D AKF MLL
Sbjct: 144 GHAPGWRAVPVHDPSVQDAAVHALKSIQQRSNSLFPYELQEVVHANAEVVDDSAKFDMLL 203

Query: 61  KVKRGEKEEKLNVEVHK-KEGTFHLNQMQ 88
           KVKRG  EEK  V VHK  EG +HLNQM+
Sbjct: 204 KVKRGSTEEKFKVLVHKNNEGNYHLNQME 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115435888|ref|NP_001042702.1| Os01g0270100 [Oryza sativa Japonica Group] gi|122228720|sp|Q0JNR2.1|CYT12_ORYSJ RecName: Full=Cysteine proteinase inhibitor 12; AltName: Full=Oryzacystatin XII; Short=OC-XII; AltName: Full=Oryzacystatin-12; Flags: Precursor gi|113532233|dbj|BAF04616.1| Os01g0270100 [Oryza sativa Japonica Group] gi|215767437|dbj|BAG99665.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 77/93 (82%), Gaps = 1/93 (1%)

Query: 1   GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLL 60
           GH PGW+ VPVHDP V+DAA+HA+++IQQRSNSLFPY L EIV AKAEV+EDFAKF +L+
Sbjct: 153 GHEPGWRDVPVHDPVVKDAADHAVKSIQQRSNSLFPYELLEIVRAKAEVVEDFAKFDILM 212

Query: 61  KVKRGEKEEKLNVEVHKK-EGTFHLNQMQQDQE 92
           K+KRG KEEK   EVHK  EG F LNQMQQ+ +
Sbjct: 213 KLKRGNKEEKFKAEVHKNLEGAFVLNQMQQEHD 245

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910880|gb|ACF06548.1| cysteine proteinase inhibitor [Elaeis guineensis]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/90 (74%), Positives = 76/90 (84%), Gaps = 1/90 (1%)

Query: 1   GHCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLL 60
           GH PGW+ VP HDP VQ+AANHA++TIQQRSNSL PY L EI+ AKAEVIED AKF +LL
Sbjct: 109 GHEPGWRTVPAHDPVVQEAANHAVKTIQQRSNSLAPYELLEILLAKAEVIEDSAKFDLLL 168

Query: 61  KVKRGEKEEKLNVEVHKK-EGTFHLNQMQQ 89
           K+KRG KEEKL VEVHK  EGTFHLN+MQ+
Sbjct: 169 KLKRGSKEEKLKVEVHKNLEGTFHLNKMQE 198

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
TAIR|locus:2092492	234	CYSB "cystatin B" [Arabidopsis	0.989	0.388	0.608	9.7e-25
TAIR|locus:2175294	232	AT5G05110 [Arabidopsis thalian	0.804	0.318	0.513	1.4e-16

TAIR|locus:2092492 CYSB "cystatin B" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 56/92 (60%), Positives = 67/92 (72%)

Query:     2 HCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLK 61
             H  GW+ VP  DP+V+  A  A++TIQQRSNSLFPY L E+VHAKAEV  + AK+ MLLK
Sbjct:   143 HESGWREVPGDDPEVKHVAEQAVKTIQQRSNSLFPYELLEVVHAKAEVTGEAAKYNMLLK 202

Query:    62 VKRGEKEEKLNVEVHKK-EGTFHLNQMQQDQE 92
             +KRGEKEEK  VEVHK  EG  HLN  +Q  +
Sbjct:   203 LKRGEKEEKFKVEVHKNHEGALHLNHAEQHHD 234

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2175294 AT5G05110 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 38/74 (51%), Positives = 59/74 (79%)

Query:     6 WQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRG 65
             W++V  ++P+VQ+AA HA++++QQ+SNSLFPY L +I+ A+A+V+E+  KF +LLK++RG
Sbjct:   154 WRSVSTNNPEVQEAAKHAMKSLQQKSNSLFPYKLIDIILARAKVVEERVKFELLLKLERG 213

Query:    66 EKEEKLNVEVHKKE 79
              K EK  VEV K +
Sbjct:   214 NKLEKFMVEVMKDQ 227


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       92        92   0.00091  102 3  11 22  0.36    30
                                                     29  0.40    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  108 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  11.48u 0.08s 11.56t   Elapsed:  00:00:04
  Total cpu time:  11.48u 0.08s 11.56t   Elapsed:  00:00:05
  Start:  Fri May 10 18:01:49 2013   End:  Fri May 10 18:01:54 2013

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_III0367 hypothetical protein (236 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	92
smart00043	107	smart00043, CY, Cystatin-like domain	0.002

>gnl|CDD|214484 smart00043, CY, Cystatin-like domain

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 16/45 (35%), Positives = 29/45 (64%)

Query: 5  GWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEV 49
          G   VP +DP+VQ+AA+ A+    ++SN  +   + ++V AK++V
Sbjct: 5  GPSDVPPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQV 49

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 107

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
PF00031	94	Cystatin: Cystatin domain; InterPro: IPR000010 Pep	99.75
cd00042	105	CY Substituted updates: Jan 30, 2002	99.72
smart00043	107	CY Cystatin-like domain. Cystatins are a family of	99.67
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	96.44
TIGR01638	92	Atha_cystat_rel Arabidopsis thaliana cystatin-rela	95.56
PF00666	67	Cathelicidins: Cathelicidin; InterPro: IPR001894 T	94.32
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	90.35
PF06907	220	Latexin: Latexin; InterPro: IPR009684 This family	90.26
PF12870	111	Lumazine_bd: Lumazine-binding domain; InterPro: IP	83.34

>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.75  E-value=3.2e-19  Score=114.68  Aligned_cols=63  Identities=25%  Similarity=0.427  Sum_probs=60.6

Q ss_pred             CCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccc
Q 042638            4 PGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEK   67 (92)
Q Consensus         4 gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k   67 (92)
                      |||.+++++||+|+++|++|+..||+.||+.+.|++.+|++|++|||+| .+|.|.+.+.+++-
T Consensus         1 Gg~~~~~~~dp~v~~~~~~al~~~N~~~~~~~~~~~~~v~~a~~QvV~G-~~Y~i~~~~~~t~C   63 (94)
T PF00031_consen    1 GGPSPVDPNDPEVQEAAEFALDKFNEQSNSGYKFKLVKVISATTQVVAG-INYYIEFEVGETNC   63 (94)
T ss_dssp             SSEEEECTTSHHHHHHHHHHHHHHHHHSTTSEEEEEEEEEEEEEEESSS-EEEEEEEEEEEEEE
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHHHhCcccCcceeeeeeEEEEeecCC-ceEEEEEEEEcccc
Confidence            8999999999999999999999999999999999999999999999999 79999999998854

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....

>cd00042 CY Substituted updates: Jan 30, 2002

Probab=99.72  E-value=8e-18  Score=110.27  Aligned_cols=61  Identities=21%  Similarity=0.451  Sum_probs=58.9

Q ss_pred             CCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEecccc
Q 042638            4 PGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGE   66 (92)
Q Consensus         4 gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~   66 (92)
                      |||++++++||+|+++|++|+..||+.||+.| |++.+|++|++|||+| .+|.+.+++++.+
T Consensus         1 gg~~~~~~~d~~~~~~~~~a~~~~N~~~~~~~-~~~~~i~~~~~QvvaG-~~y~i~~~~~~t~   61 (105)
T cd00042           1 GGPSDIPANDPEVQELADFAVAEYNKKSNDKY-LEFFKVLSAKSQVVAG-TNYYITVEAGDTN   61 (105)
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHHhhcCccc-eeEEEEEEEEEEEEee-eEEEEEEEEeccc
Confidence            79999999999999999999999999999999 9999999999999999 9999999999873

>smart00043 CY Cystatin-like domain

Probab=99.67  E-value=6e-17  Score=106.68  Aligned_cols=63  Identities=27%  Similarity=0.465  Sum_probs=59.5

Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEecccc
Q 042638            3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGE   66 (92)
Q Consensus         3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~   66 (92)
                      .|||++++++||+|+++|++|+..||+.||+.|.|++.+|++|++|||+| .+|.+.+++++++
T Consensus         3 ~Gg~~~~~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~~v~~a~~QvvaG-~~y~l~~~v~~t~   65 (107)
T smart00043        3 LGGPSDVPPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAG-TNYYLKVEVGETN   65 (107)
T ss_pred             CCCCccCCCCCHHHHHHHHHHHHHHHHhcccchhhhhhhhheeeeeeecc-eEEEEEEEEEece
Confidence            48999999999999999999999999999999999999999999999999 8999999988654

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=96.44  E-value=0.0049  Score=47.51  Aligned_cols=71  Identities=13%  Similarity=0.270  Sum_probs=57.6

Q ss_pred             CCCcccc-CCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhh-hheeeeeeEeccc-cceeeeeeEEE
Q 042638            3 CPGWQAV-PVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIED-FAKFAMLLKVKRG-EKEEKLNVEVH   76 (92)
Q Consensus         3 ~gG~~~v-~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g-~~K~~l~lklkrg-~k~e~~~vev~   76 (92)
                      ...|.++ ++++|.||+.+.+||.++| ++|+  --|-.+|.++-.|=+.. -.||.|++.-+-| ++.-+|.+-|-
T Consensus       114 ~~~Wi~I~nin~p~VQeLgkFAV~EhN-K~gd--~LkF~KV~eGw~q~l~~d~ikYrLhI~AkDg~G~~~~YeAvV~  187 (202)
T PF07430_consen  114 SKKWIPIPNINNPFVQELGKFAVIEHN-KAGD--KLKFEKVYEGWYQDLGNDGIKYRLHIVAKDGLGRLGNYEAVVW  187 (202)
T ss_pred             cCCCEECCCCCcHHHHHHHHHHHHHHh-hcCC--ceEEEEEeeEEEEeccCCCceEEEEEEeecCCCCcCceEEEEE
Confidence            3578777 8899999999999999999 6666  44567888998887753 3899999999999 78888877554

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein

Probab=95.56  E-value=0.0087  Score=41.09  Aligned_cols=54  Identities=11%  Similarity=0.057  Sum_probs=44.4

Q ss_pred             CCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEecccc
Q 042638           10 PVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGE   66 (92)
Q Consensus        10 ~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~   66 (92)
                      .++.--..+-|+.|++.||+.-+  .-+++++|++|..|..+| .+|.+++..+-..
T Consensus         9 ~T~rd~~~~la~~al~k~N~~~~--t~lEfV~vVrAn~~~~~g-~~~yITF~Ard~~   62 (92)
T TIGR01638         9 ETNRDLLERLSYVASKKYNDTKF--LNLELVEVVRANYRGGAK-SKSYITFEARDKP   62 (92)
T ss_pred             cCHHHHHHHHHHHHHHHhhhhcC--ceEEEEEEEEEEeeccce-EEEEEEEEEecCC
Confidence            34445567999999999999876  567999999999999999 8888888776443

This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.

>PF00666 Cathelicidins: Cathelicidin; InterPro: IPR001894 The precursor sequences of a number of antimicrobial peptides secreted by neutrophils (polymorphonuclear leukocytes) upon activation have been found to be evolutionarily related and are collectively known as cathelicidins []

Probab=94.32  E-value=0.021  Score=37.15  Aligned_cols=34  Identities=18%  Similarity=0.056  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhh
Q 042638           16 VQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEV   49 (92)
Q Consensus        16 Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQV   49 (92)
                      .++|...||..||++|.+.+.|+|++..---.+.
T Consensus         4 Y~eav~~Av~~yN~~s~~~nlfRLLe~~p~P~~~   37 (67)
T PF00666_consen    4 YEEAVLRAVDFYNQGSSGENLFRLLELDPPPGWD   37 (67)
T ss_dssp             CHHHHHHHHHHHHHCS-SSEEEEEEEE---SSSS
T ss_pred             HHHHHHHHHHHHhcCCCccCceeeeeccCCCCCC
Confidence            4799999999999999999999999987544433

Structurally, these proteins consist of three domains: a signal sequence, a conserved region of about 100 residues that contains four cysteines involved in two disulphide bonds, and a highly divergent C-terminal section of variable size. It is in this C-terminal section that the antibacterial peptides are found; they are proteolytically processed from their precursor by enzymes such as elastase. This structure is shown in the following schematic representation: +---+--------------------------------+--------------------+ |Sig| Propeptide C C C C | Antibacterial pep. | +---+----------------|--|--|--|------+--------------------+ | | | | +--+ +--+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0006952 defense response, 0005576 extracellular region; PDB: 1KWI_A 1PFP_A 1LXE_A 1N5P_A 1N5H_A.

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=90.35  E-value=0.3  Score=37.86  Aligned_cols=71  Identities=23%  Similarity=0.365  Sum_probs=47.7

Q ss_pred             CCCcccc-CCCChHHHHHHHHHHHHHhhhc-CCCCcchhhhhhhhh--hhhhhhhheeeeeeE----eccccceeeeeeE
Q 042638            3 CPGWQAV-PVHDPQVQDAANHAIQTIQQRS-NSLFPYVLQEIVHAK--AEVIEDFAKFAMLLK----VKRGEKEEKLNVE   74 (92)
Q Consensus         3 ~gG~~~v-~~~DP~Vq~AA~~AVk~~n~~S-Nsl~~ykl~eIv~Aq--sQVV~g~~K~~l~lk----lkrg~k~e~~~ve   74 (92)
                      .|||-.+ ++.+|.+|+.|.|||.+++-.- ||+.+   ..|.+.-  -+..++ +||-|.++    +.|-=+=|..-.|
T Consensus         7 ~~~w~~ip~v~~~~~q~v~~~~veq~k~~~~~~l~~---~~v~egwy~el~~~~-~~yrlhv~a~d~l~r~l~~e~ii~e   82 (202)
T PF07430_consen    7 SPKWIKIPDVKEPCLQEVAKFAVEQFKIQYGDSLKF---RSVVEGWYFELCPNS-LKYRLHVKAIDFLGRSLKYEAIIIE   82 (202)
T ss_pred             CcccccCCcccchHHHHHHHHHHHHHhhhcccceee---eeeeeceeecccccc-eeEEEeehhhhhhccccceeeeeee
Confidence            5899777 7999999999999999998654 44432   2344443  445566 88888876    4555554544444


Q ss_pred             EEe
Q 042638           75 VHK   77 (92)
Q Consensus        75 v~~   77 (92)
                      =++
T Consensus        83 ~~~   85 (202)
T PF07430_consen   83 EKP   85 (202)
T ss_pred             hhh
Confidence            443

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []

Probab=90.26  E-value=0.23  Score=38.82  Aligned_cols=60  Identities=25%  Similarity=0.264  Sum_probs=49.1

Q ss_pred             ccCCCChHHHHHHHHHHHHHhhhcCCCC-cchhhhhhhhhhhhhhhh-heeeeeeEeccccc
Q 042638            8 AVPVHDPQVQDAANHAIQTIQQRSNSLF-PYVLQEIVHAKAEVIEDF-AKFAMLLKVKRGEK   67 (92)
Q Consensus         8 ~v~~~DP~Vq~AA~~AVk~~n~~SNsl~-~ykl~eIv~AqsQVV~g~-~K~~l~lklkrg~k   67 (92)
                      +++|+.=--++||..|+-=||-++-|.+ .|-|..|.+|.++++.|. -||+|..-+++=..
T Consensus         1 e~~p~h~~a~rAA~va~hy~N~~~GSP~~l~~l~~V~~a~~e~ip~~G~Ky~L~FSte~~~~   62 (220)
T PF06907_consen    1 EINPSHRPAQRAARVAQHYINYRAGSPSRLFVLQQVQKARAEDIPGEGCKYDLVFSTEEYIE   62 (220)
T ss_dssp             E--TTSHHHHHHHHHHHHHHHHHH-BTTB-EEEEEEEEEEEEEETTTEEEEEEEEEEEETTT
T ss_pred             CCCCcchHHHHHHHHHHHHhccccCCCceeeehhhhhhhhheeccCCCCEEEEEEEhHHhhc
Confidence            4677777889999999999999999988 888999999999999776 99999998887543

Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.

>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria

Probab=83.34  E-value=4  Score=25.32  Aligned_cols=62  Identities=16%  Similarity=0.293  Sum_probs=37.1

Q ss_pred             HHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEecCCeeeee
Q 042638           20 ANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKKEGTFHLN   85 (92)
Q Consensus        20 A~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~~g~~~l~   85 (92)
                      .............+...++..+|..-..   ...+...+.+..+-| +.+.+.+.|-|.+|.|-++
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~---g~~A~V~v~~~~~~g-~~~~~~~~lvk~dg~Wkv~  111 (111)
T PF12870_consen   50 EKQFASEMKKKYKKIGSIKIVEVEENTI---GDTATVTVKITYKDG-KEKTFTVPLVKEDGKWKVC  111 (111)
T ss_dssp             HHHHHHHHHHHHHHTTSEEEEEEEEEEE---SSEEEEEEEEEETTS--EEEEEEEEEEETTEEEE-
T ss_pred             HHHHHHHHHHhhhccCceEEEEEEEecc---CCEEEEEEEEEECCC-CeeEEEEEEEEECCEEEeC
Confidence            3333444444444555666666654433   334666666665554 5577899999999999874

Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	92
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	2e-08
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	2e-08
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	5e-07
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	4e-04
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	7e-04
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	7e-04

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 1r4c_A Length = 120

 Score = 46.7 bits (110), Expect = 2e-08
 Identities = 10/60 (16%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 5  GWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKR 64
          G     V +  V+ A + A+    + SN ++     ++V A+ +++     + + +++ R
Sbjct: 12 GPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIV-AGVNYFLDVELCR 70

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens} Length = 131

 Score = 47.1 bits (111), Expect = 2e-08
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 3  CPG-WQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLK 61
           PG  + +  +DP V  AA ++++     +N +F +    I  A  + I    K+ + ++
Sbjct: 16 KPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQ-IVKGLKYMLEVE 74

Query: 62 VKR 64
          + R
Sbjct: 75 IGR 77

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A Length = 111

 Score = 43.2 bits (101), Expect = 5e-07
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 5  GWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKR 64
              V  +D  +Q A   A+    + SN  +   +  ++ AK +++    K+ + +++ R
Sbjct: 5  APVPVDENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGI-KYILQVEIGR 63

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A Length = 122

 Score = 36.0 bits (82), Expect = 4e-04
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 5  GWQAVPVHDPQVQDAANHAIQTIQQRSNS-LFPYVLQEIVHAKAEVIEDFAKFAMLLKVK 63
          G  A  ++D  VQ A + AI    +  N   +     +++ A  +++     +   +K  
Sbjct: 13 GIHATDLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGV-NYYFNVKFG 71

Query: 64 R 64
          R
Sbjct: 72 R 72

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus} Length = 135

 Score = 35.1 bits (80), Expect = 7e-04
 Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 5   GWQAVPV---HDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLK 61
           G    P+   +    +D A  A++    ++N+L       +V AK +V+       + ++
Sbjct: 45  GIYDAPLNNENGFDKEDLARFAVREYNNKNNAL--LEFVRVVKAKEQVVSGM-MHYLTVE 101

Query: 62  VKRGEKEEKLNVEVHKKEGT 81
           V    K++    +V ++   
Sbjct: 102 VNDAGKKKLYEAKVWEQVWM 121

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata} Length = 115

 Score = 34.8 bits (79), Expect = 7e-04
 Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 5  GWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVI 50
          GW      + +  + A+ A  +  +        V   +   + +V+
Sbjct: 6  GWTRQDPTEARFLELAHFATSSQTEGREFYDTVV--TVKEVETQVV 49

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	92
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	99.82
1cyu_A	98	Cystatin A, stefin A; proteinase inhibitor (cystei	99.82
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	99.79
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	99.78
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	99.78
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	99.77
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	99.75
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	99.74
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	99.73
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	99.71
3ul5_A	139	Canecystatin-1; defense, hydrolase inhibitor; 2.30	99.71
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	99.7
2kxg_A	95	Aspartic protease inhibitor; sqapi, protein, hydro	99.65
2oct_A	98	Cystatin B; stefin, amyloid, domain-swapping, hand	99.6
2o9u_X	97	Monellin chain B and monellin chain A; alternative	99.34
1kwi_A	101	Protegrin-3 precursor; cathelicidin motif, disulfi	94.47
2bo9_B	222	Human latexin, MUM; metallocarboxypeptidase, X-RAY	92.28

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A

Probab=99.82  E-value=1e-20  Score=124.69  Aligned_cols=83  Identities=17%  Similarity=0.193  Sum_probs=74.8

Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEecccc----------------
Q 042638            3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGE----------------   66 (92)
Q Consensus         3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~----------------   66 (92)
                      .|||++++++||+||+||++||..||++||+.|+|++.+|++|++|||+| .+|.|.+++++++                
T Consensus         3 ~Gg~~~~~~~d~~v~~~~~~av~~~N~~s~~~~~~~l~~v~~a~~QvVaG-~~y~l~v~v~~t~C~k~~~~~~~C~~~~~   81 (111)
T 1yvb_I            3 LGAPVPVDENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSG-IKYILQVEIGRTTCPKSSGDLQSCEFHDE   81 (111)
T ss_dssp             TTCEECCCTTCHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCCEEEESSS-EEEEEEEEEEEBSSCSSSSCSSCCCBCSS
T ss_pred             CCCceECCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEEEEEEEEEEECC-eEEEEEEEEEccccCCCCCCcccCCCCCC
Confidence            59999999999999999999999999999999999999999999999999 9999999999996                


Q ss_pred             ----ceeeeeeEEEec--CCeeeeec
Q 042638           67 ----KEEKLNVEVHKK--EGTFHLNQ   86 (92)
Q Consensus        67 ----k~e~~~vev~~~--~g~~~l~~   86 (92)
                          +....+++|.-.  .+.+.|..
T Consensus        82 ~~~~~~~~C~~~V~~~pW~~~~~l~~  107 (111)
T 1yvb_I           82 PEMAKYTTCTFVVYSIPWLNQIKLLE  107 (111)
T ss_dssp             TTTSCCEEEEEEEEEEGGGTEEEEEE
T ss_pred             cccccccEEEEEEEecCCCCccEeec
Confidence                445678888766  77776653

>1cyu_A Cystatin A, stefin A; proteinase inhibitor (cysteine); NMR {Homo sapiens} SCOP: d.17.1.2 PDB: 1cyv_A 1gd3_A 1dvc_A 1dvd_A 1n9j_A 1nb3_I* 1nb5_I* 3k9m_C 3kfq_C 3kse_D* 1gd4_A

Probab=99.82  E-value=1.1e-21  Score=128.97  Aligned_cols=83  Identities=17%  Similarity=0.313  Sum_probs=75.2

Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec----
Q 042638            3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK----   78 (92)
Q Consensus         3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~----   78 (92)
                      .|||++++++||+||++|++|+.++|++||+.|  ++.+|++|++|||+| .+|.|.+++.++.   ..+++|+++    
T Consensus         3 ~GG~~~~~~~d~ev~~~a~~av~~~n~~~n~~~--~~~~vv~a~~QVVaG-~nY~l~v~~~~~~---c~~~~V~~~l~~~   76 (98)
T 1cyu_A            3 PGGLSEAKPATPEIQEIVDKVKPQLEEKTNETY--GKLEAVQYKTQVVAG-TNYYIKVRAGDNK---YLHLKVFKSLPGQ   76 (98)
T ss_dssp             CSSCSSEEESCTTHHHHHHHTCTTTTTSSCCSS--SCEEEEEEEEECSSS-CEEEEEEEECSSC---BCEEEEECCCSSS
T ss_pred             CcccccCCCCCHHHHHHHHHHHHHHHhhcCCCc--ceEEEEEEEEEEecc-eEEEEEEEEcCCc---EEEEEEecCCCCC
Confidence            599999999999999999999999999999976  999999999999999 7888888887765   689999987    


Q ss_pred             CCeeeeecccccc
Q 042638           79 EGTFHLNQMQQDQ   91 (92)
Q Consensus        79 ~g~~~l~~~~~~~   91 (92)
                      +|.|.|++++++.
T Consensus        77 ~~~~~l~~~q~~k   89 (98)
T 1cyu_A           77 NEDLVLTGYQVDK   89 (98)
T ss_dssp             CCCCEEEEEECCS
T ss_pred             CCCeEEEEEecCC
Confidence            6899999998753

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A

Probab=99.79  E-value=9.6e-20  Score=122.70  Aligned_cols=83  Identities=17%  Similarity=0.245  Sum_probs=74.5

Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHhhh-cCCCCcchhhhhhhhhhhhhhhhheeeeeeEecccc---------------
Q 042638            3 CPGWQAVPVHDPQVQDAANHAIQTIQQR-SNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGE---------------   66 (92)
Q Consensus         3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~-SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~---------------   66 (92)
                      .|||++++++||+||++|++||.+||++ ||+.|+|++.+|++|++|||+| .+|.|.+++.+++               
T Consensus        11 ~Gg~~~~~~~d~~v~~~a~~Av~~~N~~~s~~~~~~~l~~v~~a~~QVVaG-~~Y~l~v~v~~t~C~k~~~~~~~C~~~~   89 (122)
T 1roa_A           11 AGGIHATDLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGG-VNYYFNVKFGRTTCTKSQPNLDNCPFND   89 (122)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTE-EEEEEEEEEEEEEEETTSSCCSSCCBCC
T ss_pred             CCCCeECCCCCHHHHHHHHHHHHHHHhcccCCCceeEEEEEEEEEEEEECC-eEEEEEEEEEccccCCCCCCcccCCCCC
Confidence            4899999999999999999999999999 9999999999999999999999 9999999999986               


Q ss_pred             -----ceeeeeeEEEec--CCeeeeec
Q 042638           67 -----KEEKLNVEVHKK--EGTFHLNQ   86 (92)
Q Consensus        67 -----k~e~~~vev~~~--~g~~~l~~   86 (92)
                           +....+++|.-.  .+.+.|..
T Consensus        90 ~~~~~~~~~C~~~V~~~PW~~~~~l~~  116 (122)
T 1roa_A           90 QPKLKEEEFCSFQINEVPWEDKISILN  116 (122)
T ss_dssp             STTCCCCEEEEEEEEEETTTTEEEEEE
T ss_pred             CcccccceEEEEEEEecccCCccEECc
Confidence                 345678888766  77777754

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} SCOP: d.17.1.0

Probab=99.78  E-value=2e-19  Score=117.44  Aligned_cols=84  Identities=19%  Similarity=0.336  Sum_probs=72.4

Q ss_pred             CCCcccc--CCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec--
Q 042638            3 CPGWQAV--PVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK--   78 (92)
Q Consensus         3 ~gG~~~v--~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~--   78 (92)
                      .|||+++  +++||+||++|+|||.+||++||+.|.|  .+|++|++|||+| .+|.|.+++.+|++...+.++|.-.  
T Consensus         3 ~GG~~~~~~~~~d~~v~~~a~fav~~~n~~~n~~~~~--~~Vv~a~~QVVaG-~nY~l~v~~~~~~~~~~y~a~V~~~pW   79 (91)
T 3ima_B            3 MGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQF--SRLVKAKQQVVSG-IMHHLTVEVIEGGKKKVYEAKVWVQAW   79 (91)
T ss_dssp             BTCEEC------CHHHHHHHHHHHHHHHHHHTCCCEE--EEEEEEEEEESSS-EEEEEEEEEEETTEEEEEEEEEEEEGG
T ss_pred             CcccccCcCCCCCHHHHHHHHHHHHHHHHhcCCceEE--EEEEEEEEEEecc-EEEEEEEEEecCCceEEEEEEEEEeeC
Confidence            5999999  7999999999999999999999997655  9999999999999 9999999999999999999999765  


Q ss_pred             CCeeeeecccc
Q 042638           79 EGTFHLNQMQQ   89 (92)
Q Consensus        79 ~g~~~l~~~~~   89 (92)
                      .+.+.|....|
T Consensus        80 ~~~~~l~~F~~   90 (91)
T 3ima_B           80 LNSKKLHEFSP   90 (91)
T ss_dssp             GTEEEEEEEEC
T ss_pred             CCcEEEEEEEe
Confidence            78888776554

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} SCOP: d.17.1.2 PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 3sva_A 3s67_A 1r4c_A

Probab=99.78  E-value=1.6e-19  Score=121.84  Aligned_cols=83  Identities=16%  Similarity=0.295  Sum_probs=71.5

Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccc-----------------
Q 042638            3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRG-----------------   65 (92)
Q Consensus         3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg-----------------   65 (92)
                      .|||++++++||+||+||++||.+||++||+.|+|++.+|++|++|||+| .+|.|.++|.|.                 
T Consensus        10 ~Gg~~~~~~~d~~v~~~a~~av~~~N~~sn~~~~~~~~~v~~a~~QvVaG-~~Y~l~v~v~~t~C~K~~~~~~~C~~~~~   88 (120)
T 3gax_A           10 VGGPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAG-VNYFLDVELCRTTCTKTQPNLDNCPFHDQ   88 (120)
T ss_dssp             --CCEEECTTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEESSS-EEEEEEEEEEEEEEESCC--CCCCCBCSS
T ss_pred             CCCCEeCCCCCHHHHHHHHHHHHHHHhccCCcceeeEEEEEEEEEEEecC-eEEEEEEEEEeeeccCCCCCcccCCCcCC
Confidence            48999999999999999999999999999999999999999999999999 999999999985                 


Q ss_pred             ---cceeeeeeEEEec--CCeeeeec
Q 042638           66 ---EKEEKLNVEVHKK--EGTFHLNQ   86 (92)
Q Consensus        66 ---~k~e~~~vev~~~--~g~~~l~~   86 (92)
                         .+.-...++|.-.  .+.|.|..
T Consensus        89 ~~~~~~~~C~~~V~~~PW~~~~~l~~  114 (120)
T 3gax_A           89 PHLKRKAFCSFQIYAVPWQGTMTLSK  114 (120)
T ss_dssp             HHHHCCEEEEEEEEEETTTTEEEEEE
T ss_pred             ccccCceEEEEEEEecCCCCeEEecc
Confidence               2344566777655  77777654

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens}

Probab=99.77  E-value=3e-19  Score=123.13  Aligned_cols=87  Identities=17%  Similarity=0.240  Sum_probs=75.0

Q ss_pred             CCCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEecccc---------------
Q 042638            2 HCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGE---------------   66 (92)
Q Consensus         2 ~~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~---------------   66 (92)
                      ..|||++++++||+||+||++||.+||++||+.|+|++.+|++|++|||+| .+|.|.++++++.               
T Consensus        16 ~~Gg~~~~~~~d~ev~e~a~~Av~~~N~~sn~~~~~~l~~V~~a~~QVVaG-~~Y~l~v~v~~t~C~K~~~~~~~~C~~~   94 (131)
T 2ch9_A           16 KPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKG-LKYMLEVEIGRTTCKKNQHLRLDDCDFQ   94 (131)
T ss_dssp             CCCCCEECCTTCHHHHHHHHHHHHHHHHHSCCSEEEEEEEEEEEEEEESSS-EEEEEEEEEEEEEEETTSCCCGGGCCBC
T ss_pred             CCCCCeeCCCCCHHHHHHHHHHHHHHHHhCCCCcceEEEEEEEeeeEecCC-eEEEEEEEEEcccccCCCCCccccCCcc
Confidence            369999999999999999999999999999999999999999999999999 9999999999852               


Q ss_pred             -----c-eeeeeeEEEec--CCeeeeecccc
Q 042638           67 -----K-EEKLNVEVHKK--EGTFHLNQMQQ   89 (92)
Q Consensus        67 -----k-~e~~~vev~~~--~g~~~l~~~~~   89 (92)
                           + ....+++|--.  ++.+.|....-
T Consensus        95 ~~~~~~~~~~C~~~V~~~PW~~~~~l~~f~~  125 (131)
T 2ch9_A           95 TNHTLKQTLSCYSEVWVVPWLQHFEVPVLRC  125 (131)
T ss_dssp             CSTTTCCEEEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             cCcccccccEEEEEEEEecCCCeeEEEEEec
Confidence                 1 12577777665  77777775543

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A

Probab=99.75  E-value=1.3e-18  Score=116.37  Aligned_cols=83  Identities=14%  Similarity=0.261  Sum_probs=70.8

Q ss_pred             CCCccccCC-CChHHHHHHHHHHHHHhhhcC-CCCcchhhhhhhhhhhhhhhhheeeeeeEecc----------------
Q 042638            3 CPGWQAVPV-HDPQVQDAANHAIQTIQQRSN-SLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKR----------------   64 (92)
Q Consensus         3 ~gG~~~v~~-~DP~Vq~AA~~AVk~~n~~SN-sl~~ykl~eIv~AqsQVV~g~~K~~l~lklkr----------------   64 (92)
                      .|||+++++ +||+||++|++||..||+.|| +.|+|++.+|++|++|||+| .+|.|.+++.|                
T Consensus         6 ~Gg~~~~~~~~~~~v~~~~~~av~~~N~~sn~~~~~~~~~~V~~a~~QvVaG-~~Y~l~v~v~~t~C~K~~~~~~~~C~~   84 (115)
T 3mwz_A            6 RGGYRERSNQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMKVETQTVAG-TNYRLTLKVAESTCELTSTYNKDTCQA   84 (115)
T ss_dssp             SSCCEEECTTSCTHHHHHHHHHHHHHHHTSTTCCEEEEEEEEEEEEEEESSS-EEEEEEEEEEEEEEETTSCCCTTTCCC
T ss_pred             CCcceECCCCCCHHHHHHHHHHHHHHHhhcCCcccceeeeeeeEEEeeccCC-EEEEEEEEEEeccccCCCcCCcccCCC
Confidence            599999999 999999999999999999999 89999999999999999999 89999999965                


Q ss_pred             --ccceeeeeeEEEec-CCeeeeec
Q 042638           65 --GEKEEKLNVEVHKK-EGTFHLNQ   86 (92)
Q Consensus        65 --g~k~e~~~vev~~~-~g~~~l~~   86 (92)
                        |.+.-...++|.-. .+.+.|..
T Consensus        85 ~~~~~~~~C~~~V~~~P~~~~~l~~  109 (115)
T 3mwz_A           85 NANAAQRTCTTVIYRNMQGEKSINS  109 (115)
T ss_dssp             CTTSCEEEEEEEEEECTTSCEEEEE
T ss_pred             CCCCCeeEEEEEEEECCCCEEEEcc
Confidence              34455666777655 56665543

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata}

Probab=99.74  E-value=1.4e-18  Score=117.81  Aligned_cols=82  Identities=9%  Similarity=0.196  Sum_probs=72.1

Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccc-----------------
Q 042638            3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRG-----------------   65 (92)
Q Consensus         3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg-----------------   65 (92)
                      .|||++++++||+||++|++||.  |+.||+.|+|++.+|++|++|||+| .+|.|.+++.|.                 
T Consensus         4 ~GG~~~i~~~d~~v~~~a~~Av~--N~~s~~~~~~~~~kV~~a~~QVVaG-~~Y~i~v~v~~t~C~K~~~~~~~~~C~~~   80 (115)
T 3l0r_A            4 PGGWTRQDPTEARFLELAHFATS--SQTEGREFYDTVVTVKEVETQVVAG-MNYKLTIEISPSVCKIGEVQYSAEQCVPK   80 (115)
T ss_dssp             CCSCEEECTTCHHHHHHHHHHHT--TCCTTCSEEEEEEEEEEEEEEESSS-EEEEEEEEEEEEEEEBTTBCCCTTTCCBS
T ss_pred             cccceeCCCCCHHHHHHHHHHHh--ccccCCCcceEEEEEEEEEEEEEee-EEEEEEEEEecccccccccccccccCccc
Confidence            59999999999999999999999  9999999999999999999999999 999999999874                 


Q ss_pred             --cceeeeeeEEEec--CCeeeeecc
Q 042638           66 --EKEEKLNVEVHKK--EGTFHLNQM   87 (92)
Q Consensus        66 --~k~e~~~vev~~~--~g~~~l~~~   87 (92)
                        .+-....++|.-.  .+.+.|...
T Consensus        81 ~~~~~~~C~~~V~~~PW~~~~~l~~~  106 (115)
T 3l0r_A           81 DAQQKSTCVAVIYHVPWQNQKSVTSY  106 (115)
T ss_dssp             CTTSCEEEEEEEEEEGGGTEEEEEEE
T ss_pred             CCCceeEEEEEEEEecCCCeeEEEEE
Confidence              2445677777655  777777654

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2

Probab=99.73  E-value=4.3e-18  Score=112.44  Aligned_cols=84  Identities=21%  Similarity=0.355  Sum_probs=75.6

Q ss_pred             CCCccccC-CCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec--C
Q 042638            3 CPGWQAVP-VHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK--E   79 (92)
Q Consensus         3 ~gG~~~v~-~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~--~   79 (92)
                      .|||++++ ++||+||++|++||..||++||+.|  ++.+|++|++|||+| .+|.|.+++.+|.+-..+.++|--.  .
T Consensus         9 ~GG~~~~~~~~~~~v~~~a~~Av~~~n~~~n~~~--~~~~Vv~a~~QVVaG-~~Y~l~v~~~~~~~~~~c~~~V~~~PW~   85 (102)
T 1eqk_A            9 LGGVEPVGNENDLHLVDLARFAVTEHNKKANSLL--EFEKLVSVKQQVVAG-TLYYFTIEVKEGDAKKLYEAKVWEKPWM   85 (102)
T ss_dssp             SSSSEEECCTTCHHHHHHHHHHHHHHHHHTTCCE--EEEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEEEEEEEBTTT
T ss_pred             CcccccCCCCCCHHHHHHHHHHHHHHHhhcCCce--EEEEEEEEEEEEecc-EEEEEEEEEecCCCcEEEEEEEEEeeCC
Confidence            58999986 9999999999999999999999975  568999999999999 9999999999999989999999876  7


Q ss_pred             Ceeeeecccc
Q 042638           80 GTFHLNQMQQ   89 (92)
Q Consensus        80 g~~~l~~~~~   89 (92)
                      +.+.|....+
T Consensus        86 ~~~~l~~f~c   95 (102)
T 1eqk_A           86 DFKELQEFKP   95 (102)
T ss_dssp             TBCCEEEEEC
T ss_pred             CceEEEEEEc
Confidence            7777776544

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A

Probab=99.71  E-value=9.1e-18  Score=107.78  Aligned_cols=82  Identities=18%  Similarity=0.258  Sum_probs=72.9

Q ss_pred             Ccccc-CCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEecc-ccceeeeeeEEEec--CC
Q 042638            5 GWQAV-PVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKR-GEKEEKLNVEVHKK--EG   80 (92)
Q Consensus         5 G~~~v-~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkr-g~k~e~~~vev~~~--~g   80 (92)
                      ||.++ +++||+||++|++||..||++||+  .|++.+|++|++|||+| .+|.|.+++.. |.+...+.++|.-.  .+
T Consensus         1 G~~~~~~~~d~~v~~~~~fAv~~~n~~~n~--~~~~~~vv~a~~QVVaG-~~Y~l~v~~~~~~~~~~~c~~~V~~~PW~~   77 (87)
T 2w9q_A            1 GIVNVPNPNNTKFQELARFAIQDYNKKQNA--HLEFVENLNVKEQVVAG-IMYYITLAATDDAGKKKIYKAKIWVKEWED   77 (87)
T ss_dssp             CCEECSSTTSHHHHHHHHHHHHHHHHHHTC--CEEEEEEEEEEEEESSS-EEEEEEEEEEETTTEEEEEEEEEEEEGGGT
T ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhcCC--ceEEEEEEEEEEEEecc-EEEEEEEEEecCCCCeEEEEEEEEEeeCCC
Confidence            79998 499999999999999999999998  89999999999999999 99999999988 45667799999876  88


Q ss_pred             eeeeecccc
Q 042638           81 TFHLNQMQQ   89 (92)
Q Consensus        81 ~~~l~~~~~   89 (92)
                      .+.|....|
T Consensus        78 ~~~l~~f~~   86 (87)
T 2w9q_A           78 FKKVVEFKL   86 (87)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEeecc
Confidence            888776544

>3ul5_A Canecystatin-1; defense, hydrolase inhibitor; 2.30A {Saccharum officinarum} PDB: 3ul6_A*

Probab=99.71  E-value=8.9e-18  Score=119.57  Aligned_cols=85  Identities=16%  Similarity=0.260  Sum_probs=71.7

Q ss_pred             CCCcccc---CCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEecc-ccceeeeeeEEEec
Q 042638            3 CPGWQAV---PVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKR-GEKEEKLNVEVHKK   78 (92)
Q Consensus         3 ~gG~~~v---~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkr-g~k~e~~~vev~~~   78 (92)
                      .|||+++   +++||+||++|+|||.+||+++|+.  |++.+|++|++|||+| .+|.|.++++. |++...|.+.|--.
T Consensus        46 ~GG~~~i~~~~~ndpeVqela~fAV~e~Nkksn~~--l~~~kVv~a~sQVVAG-~nY~L~V~a~d~~g~~~~y~a~Vwek  122 (139)
T 3ul5_A           46 VGDVRDAPAGHENDLEAIELARFAVAEHNSKTNAM--LEFERLVKVRHQVVAG-TMHHFTVQVKEAGGGKKLYEAKVWEK  122 (139)
T ss_dssp             ----------CTTCHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEEEEEEEEE-EEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred             CCCcccccCCCCCCHHHHHHHHHHHHHHHHhCCCc--eeEEEEEEEEEEEecC-EEEEEEEEEecCCCCeEEEEEEEEEe
Confidence            5899999   7999999999999999999999997  6889999999999999 99999999999 88999999999866


Q ss_pred             --CCeeeeeccccc
Q 042638           79 --EGTFHLNQMQQD   90 (92)
Q Consensus        79 --~g~~~l~~~~~~   90 (92)
                        ++...|....|-
T Consensus       123 PW~n~k~L~sF~p~  136 (139)
T 3ul5_A          123 VWENFKQLQSFQPV  136 (139)
T ss_dssp             TTTTEEEEEEEEEC
T ss_pred             eCCCceEEEEEEEc
Confidence              888888877664

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus}

Probab=99.70  E-value=2e-17  Score=116.18  Aligned_cols=85  Identities=18%  Similarity=0.271  Sum_probs=78.2

Q ss_pred             CCCccccC---CCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec-
Q 042638            3 CPGWQAVP---VHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK-   78 (92)
Q Consensus         3 ~gG~~~v~---~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~-   78 (92)
                      .|||++++   ++||+||++|+|||..||++||+.|.|  .+|++|++|||+| .+|.|.+++.+|.+-..+.++|--. 
T Consensus        43 ~GG~~~i~~~~~nd~evqe~a~fAv~e~N~~sn~~~~f--~kVv~a~~QVVAG-~nY~l~vev~~~~~~~~c~a~Vw~kP  119 (135)
T 2l4v_A           43 MGGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEF--VRVVKAKEQVVSG-MMHYLTVEVNDAGKKKLYEAKVWEQV  119 (135)
T ss_dssp             CCCSSCCCCTTTTSHHHHHHHHHHHHHHHHHTSCCCEE--EEEEEEEEECSSS-EEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred             CCccCcCCCCCCCCHHHHHHHHHHHHHHHhhcCCceEE--EEEEEEEEEEecC-EEEEEEEEEecCCceEEEEEEEEEec
Confidence            58999999   999999999999999999999998766  8999999999999 9999999999999999999999876 


Q ss_pred             -CCeeeeeccccc
Q 042638           79 -EGTFHLNQMQQD   90 (92)
Q Consensus        79 -~g~~~l~~~~~~   90 (92)
                       .+.+.|....|-
T Consensus       120 W~n~~~L~~f~~~  132 (135)
T 2l4v_A          120 WMNFRQLQEFTYL  132 (135)
T ss_dssp             SSCCEEEEEEEEC
T ss_pred             CCCceEEEEEEec
Confidence             888888877664

>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}

Probab=99.65  E-value=1.3e-16  Score=106.80  Aligned_cols=79  Identities=20%  Similarity=0.344  Sum_probs=70.8

Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhh-----eeeeeeEeccc--cceeeeeeEE
Q 042638            3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFA-----KFAMLLKVKRG--EKEEKLNVEV   75 (92)
Q Consensus         3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~-----K~~l~lklkrg--~k~e~~~vev   75 (92)
                      .|||++++++||+||++|+|||.+||++     .+++.+|++|  |||+| .     +|.|+|+++++  .+-..|.++|
T Consensus         6 ~Gg~~~i~~nd~~v~e~a~fAv~e~N~~-----~l~~~~Vv~a--QVVaG-~~~~~~~Y~L~l~~~~~~~~~~~~y~a~V   77 (95)
T 2kxg_A            6 IGEVIGISVNDPRVKEIAEFALKQHAEQ-----NLILAGVDAG--QIIKG-IPHWDNYYNLILSAKHSPHEFSKFYNVVV   77 (95)
T ss_dssp             SCCCCCCCTTCHHHHHHHHHHHHHCCTT-----CCEEEEEEEE--EEECS-SCSSCCEEEEEEEEESCTTSCCEEEEEEE
T ss_pred             CCcceECCCCCHHHHHHHHHHHHHHHhh-----CcEEEEEEEE--eEecC-ccccCccEEEEEEEecCCCCCceEEEEEE
Confidence            5899999999999999999999999998     5888999999  99999 8     99999999999  6677799999


Q ss_pred             Eec--CCeeeeecccc
Q 042638           76 HKK--EGTFHLNQMQQ   89 (92)
Q Consensus        76 ~~~--~g~~~l~~~~~   89 (92)
                      --.  ++.+.|....|
T Consensus        78 w~kpW~n~~~L~sF~~   93 (95)
T 2kxg_A           78 LEKASDNSLKLVAFVP   93 (95)
T ss_dssp             EEETTTTEEEEEEEEE
T ss_pred             EEccCCCcEEEEEeEe
Confidence            876  78888876554

>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*

Probab=99.60  E-value=5.9e-16  Score=103.13  Aligned_cols=81  Identities=14%  Similarity=0.231  Sum_probs=69.9

Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec----
Q 042638            3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK----   78 (92)
Q Consensus         3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~----   78 (92)
                      .|||.++++.||+||++|++|+.++|+++|+.  |++.+|+++++|||+| .+|.+.+++.+|.   -..+.|.+.    
T Consensus         3 ~GG~~~~~~~~~evq~i~~~a~~~~n~~~~~~--~~~~~vv~~~tQVVAG-~NY~ikv~v~~~~---~~h~~vy~~lp~~   76 (98)
T 2oct_A            3 SGAPSATQPATAETQHIADQVRSQLEEKYNKK--FPVFKAVSFKSQVVAG-TNYFIKVHVGDED---FVHLRVFQSLPHE   76 (98)
T ss_dssp             CSSCCCCEECCHHHHHHHHHHHHHHHHHHTSC--CSCCEEEEEEEEEEEE-EEEEEEEECSTTC---EEEEEEEEESSTT
T ss_pred             cccCcCCCCCCHHHHHHHHHHHHHHHhhcCCc--cceeEEEEEEEEEeCC-EEEEEEEEECCCc---EEEEEEEecCCCC
Confidence            59999999999999999999999999999998  5788999999999999 7787777776654   467788876    


Q ss_pred             CCeeeeecccc
Q 042638           79 EGTFHLNQMQQ   89 (92)
Q Consensus        79 ~g~~~l~~~~~   89 (92)
                      ++.+.|...+.
T Consensus        77 ~~~~~l~~~q~   87 (98)
T 2oct_A           77 NKSLTLSNYQT   87 (98)
T ss_dssp             CCCEEEEEEEE
T ss_pred             CCceEEEEEec
Confidence            57888888765

>2o9u_X Monellin chain B and monellin chain A; alternative conformations, 3-10 polyproline II helix, plant protein; 1.15A {Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A 1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A 1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B* 2q33_A*

Probab=99.34  E-value=1.7e-12  Score=88.22  Aligned_cols=78  Identities=9%  Similarity=0.240  Sum_probs=64.6

Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHhhhc-CCCCcchhhhhhhh-----------hhhhhhhhheeeeeeEeccccceee
Q 042638            3 CPGWQAVPVHDPQVQDAANHAIQTIQQRS-NSLFPYVLQEIVHA-----------KAEVIEDFAKFAMLLKVKRGEKEEK   70 (92)
Q Consensus         3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~S-Nsl~~ykl~eIv~A-----------qsQVV~g~~K~~l~lklkrg~k~e~   70 (92)
                      -|||.++++ ||+||+.|+|||.++|.++ |+.  -+..+|++|           +.| |+| .+|.|+|+...|    .
T Consensus         1 ~Ggw~~idv-~~~iqela~FAV~e~nk~~~~~~--L~f~~Vv~~~~~~~~~~~~~~~Q-VaG-~nY~Ltlea~d~----~   71 (97)
T 2o9u_X            1 MGEWEIIDI-GPFTQNLGKFAVDEENKIGQYGR--LTFNKVIRPCMKKTIYENEGFRE-IKG-YEYQLYVYASDK----L   71 (97)
T ss_dssp             -CCCEEECC-SHHHHHHHHHHHHHHHHHCTTCS--CCEEEEEEEEEEEEEECSSSSCS-EEE-EEEEEEEEETTE----E
T ss_pred             CCCceECCC-CHHHHHHHHHHHHHHhccccCCC--cEEEEEEEcccccccccchhhee-ecc-EEEEEEEEEeCC----c
Confidence            389999999 9999999999999999987 554  345889999           999 999 999999999887    7


Q ss_pred             eeeEEEec--CCeeeeecccc
Q 042638           71 LNVEVHKK--EGTFHLNQMQQ   89 (92)
Q Consensus        71 ~~vev~~~--~g~~~l~~~~~   89 (92)
                      |.+.|--.  ...+.|....+
T Consensus        72 yeA~V~ekpw~n~k~L~sF~~   92 (97)
T 2o9u_X           72 FRADISEDYKTRGRKLLRFNG   92 (97)
T ss_dssp             C-CEEEEETTTCCEEEEECCC
T ss_pred             eEEEEEEecCCCcEEeeEccC
Confidence            88887755  67777776554

>1kwi_A Protegrin-3 precursor; cathelicidin motif, disulfide, MAD, selenocystine, antimicrobial protein; 2.19A {Sus scrofa} SCOP: d.17.1.3 PDB: 1lxe_A 1n5h_A 1n5p_A 1pfp_A

Probab=94.47  E-value=0.022  Score=38.56  Aligned_cols=37  Identities=16%  Similarity=0.158  Sum_probs=28.0

Q ss_pred             hHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhh
Q 042638           14 PQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVI   50 (92)
Q Consensus        14 P~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV   50 (92)
                      ...++|...||..||++|-+.++|+|+++.-.-..+.
T Consensus         3 lsY~EAv~~Av~~~N~~S~~~nlFRLl~~~p~p~~~~   39 (101)
T 1kwi_A            3 LSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADE   39 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSSEEEEEEEEC-------
T ss_pred             cCHHHHHHHHHHHHhcCCCccceeeeecccCCCccCC
Confidence            3578999999999999999999999999887555554

>2bo9_B Human latexin, MUM; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: d.17.1.5 d.17.1.5 PDB: 1wnh_A

Probab=92.28  E-value=0.084  Score=40.22  Aligned_cols=61  Identities=18%  Similarity=0.183  Sum_probs=54.5

Q ss_pred             ccCCCChHHHHHHHHHHHHHhhhcCCCC-cchhhhhhhhhhhhhhhh-heeeeeeEeccccce
Q 042638            8 AVPVHDPQVQDAANHAIQTIQQRSNSLF-PYVLQEIVHAKAEVIEDF-AKFAMLLKVKRGEKE   68 (92)
Q Consensus         8 ~v~~~DP~Vq~AA~~AVk~~n~~SNsl~-~ykl~eIv~AqsQVV~g~-~K~~l~lklkrg~k~   68 (92)
                      +++|.-=.-++||+.|+.=||-+.-|.+ +|-|..|.+|.++.+.+. -||+|..-+++=..+
T Consensus         2 ei~psh~~a~rAA~vA~hy~N~~~gSP~~l~~L~~V~~a~a~~ip~~G~Ky~l~Fs~e~~~~~   64 (222)
T 2bo9_B            2 EIPPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQK   64 (222)
T ss_dssp             BCCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTC
T ss_pred             CCCCcchHHHHHHHHHHHHhhcccCCCceeeehhhhhhhhhhhccCCCcEEEEEEEeeeeecC
Confidence            5778888889999999999999999988 899999999999999887 999999998876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	92
d1r4ca_	110	d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [Ta	2e-08
d1cewi_	108	d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [T	8e-08
d1roaa_	111	d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [Ta	2e-05
d1eqka_	102	d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza	0.001
d1kwia_	98	d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {P	0.001

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (107), Expect = 2e-08
 Identities = 9/45 (20%), Positives = 21/45 (46%)

Query: 5  GWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEV 49
          G     V +  V+ A + A+    + SN ++     ++V A+ ++
Sbjct: 2  GPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQI 46

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.9 bits (103), Expect = 8e-08
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 5  GWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAE 48
              V  +D  +Q A   A+    + SN  +   +  ++ AK +
Sbjct: 2  APVPVDENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQ 45

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 2e-05
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 5  GWQAVPVHDPQVQDAANHAIQTIQQRSNS-LFPYVLQEIVHAKAEV 49
          G  A  ++D  VQ A + AI    +  N   +     +++ A  ++
Sbjct: 2  GIHATDLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQI 47

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

 Score = 33.3 bits (76), Expect = 0.001
 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 5  GWQAVP-VHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVK 63
          G + V   +D  + D A  A+    +++NSL  +   ++V  K +V+     +   ++VK
Sbjct: 11 GVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFE--KLVSVKQQVVAGT-LYYFTIEVK 67

Query: 64 RGEKEEKLNVEVHKK 78
           G+ ++    +V +K
Sbjct: 68 EGDAKKLYEAKVWEK 82

>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cathelicidin motif
domain: Cathelicidin motif of protegrin-3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 32.7 bits (74), Expect = 0.001
 Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 16 VQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGE--KEEKLNV 73
           ++A   A+  + ++S+    Y L E+        +      +   VK     +  +   
Sbjct: 4  YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 63

Query: 74 EVHKKEGTFHLNQMQ 88
          E+   +    + Q  
Sbjct: 64 ELCDFKENGRVKQCV 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	92
d1roaa_	111	Cystatin D {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1cewi_	108	Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}	99.78
d1r4ca_	110	Cystatin C {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1eqka_	102	Phytocystatin {Japanese rice (Oryza sativa), subsp	99.73
d1kwia_	98	Cathelicidin motif of protegrin-3 {Pig (Sus scrofa	99.06
d1stfi_	98	Cystatin B (stefin B) {Human (Homo sapiens) [TaxId	98.69
d1nb5i_	98	Cystatin A (stefin A) {Human (Homo sapiens) [TaxId	98.04
d2bo9b1	98	Latexin {Human (Homo sapiens) [TaxId: 9606]}	95.51

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.8e-21  Score=127.19  Aligned_cols=61  Identities=20%  Similarity=0.247  Sum_probs=58.3

Q ss_pred             CCccccCCCChHHHHHHHHHHHHHhhhcCC-CCcchhhhhhhhhhhhhhhhheeeeeeEeccc
Q 042638            4 PGWQAVPVHDPQVQDAANHAIQTIQQRSNS-LFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRG   65 (92)
Q Consensus         4 gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNs-l~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg   65 (92)
                      |||++++++||+||+||+|||..||..||+ .|.|++.+|++|++|||+| .+|.|.++|.+.
T Consensus         1 GG~~~~~~~d~~v~~~~~~Av~~~N~~sn~~~~~~~l~~V~~a~~QVVaG-~~Y~l~~~i~~T   62 (111)
T d1roaa_           1 GGIHATDLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGG-VNYYFNVKFGRT   62 (111)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTE-EEEEEEEEEEEE
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHHHhcCCccceeEEEEEEEEEEEEecC-cEEEEEEEEEec
Confidence            899999999999999999999999999996 6999999999999999999 999999999765

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.78  E-value=1.4e-20  Score=123.20  Aligned_cols=60  Identities=18%  Similarity=0.288  Sum_probs=58.1

Q ss_pred             CCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEecc
Q 042638            4 PGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKR   64 (92)
Q Consensus         4 gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkr   64 (92)
                      |||.+++++||+||++|++||..||+.||+.|+|++.+|++|++|||+| .+|.|.++|.+
T Consensus         1 Gg~~~~~~~d~~v~~~~~~Av~~~N~~s~~~~~~~~~~V~~a~~QVVaG-~~Y~l~~~i~~   60 (108)
T d1cewi_           1 GAPVPVDENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSG-IKYILQVEIGR   60 (108)
T ss_dssp             CCCEECCTTCHHHHHHHHHHTHHHHTTSCCSEEEEEEEEEEEEEEESSS-EEEEEEEEEEE
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEEeecC-cEEEEEEEEEe
Confidence            8999999999999999999999999999999999999999999999999 89999999954

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.2e-20  Score=122.57  Aligned_cols=61  Identities=16%  Similarity=0.304  Sum_probs=58.9

Q ss_pred             CCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccc
Q 042638            4 PGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRG   65 (92)
Q Consensus         4 gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg   65 (92)
                      |||.+++++||+|++||++||..||+.||+.|+|++.+|++|++|||+| .+|.|.++|.+.
T Consensus         1 Gg~~~~~~~d~~v~~~~~~Av~~~N~~s~~~~~~~~~kV~~a~~QvVaG-~~Y~l~~~i~~T   61 (110)
T d1r4ca_           1 GGPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAG-VNYFLDVELGRT   61 (110)
T ss_dssp             CCCEECCTTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEEEEE-EEEEEEEEEEEE
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHHhhCCccceeEEEEEEEEEEEeccC-CEEEEEEEEeec
Confidence            8999999999999999999999999999999999999999999999999 999999999754

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

Probab=99.73  E-value=1.5e-18  Score=114.25  Aligned_cols=84  Identities=21%  Similarity=0.357  Sum_probs=73.8

Q ss_pred             CCCcccc-CCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec--C
Q 042638            3 CPGWQAV-PVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK--E   79 (92)
Q Consensus         3 ~gG~~~v-~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~--~   79 (92)
                      .|||+++ +++||+||++|++||..||+.+|+.|  ++.+|++|++|||+| .+|.|.+++..|..-..++++|--.  .
T Consensus         9 ~GG~~~i~d~nd~~v~e~a~~Av~~~N~~~~~~~--~~vkV~~a~~QVVaG-~~Y~i~v~~~~~~~~k~c~~~Vw~~pW~   85 (102)
T d1eqka_           9 LGGVEPVGNENDLHLVDLARFAVTEHNKKANSLL--EFEKLVSVKQQVVAG-TLYYFTIEVKEGDAKKLYEAKVWEKPWM   85 (102)
T ss_dssp             SSSSEEECCTTCHHHHHHHHHHHHHHHHHTTCCE--EEEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEEEEEEEBTTT
T ss_pred             cCCcccCCCCCCHHHHHHHHHHHHHHhhcCCCce--EEEEEEEEeeeeccc-eeEEEEEEEccCCccEEEEEEEEEeeCC
Confidence            5999998 79999999999999999999999975  668999999999999 9999999999999999999999755  6


Q ss_pred             Ceeeeecccc
Q 042638           80 GTFHLNQMQQ   89 (92)
Q Consensus        80 g~~~l~~~~~   89 (92)
                      ....|....|
T Consensus        86 ~~~~l~~f~~   95 (102)
T d1eqka_          86 DFKELQEFKP   95 (102)
T ss_dssp             TBCCEEEEEC
T ss_pred             CccEEEEEEE
Confidence            6656654443

>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cathelicidin motif
domain: Cathelicidin motif of protegrin-3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.06  E-value=2.3e-11  Score=77.96  Aligned_cols=50  Identities=16%  Similarity=0.160  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhh-hhhheeeeeeEeccc
Q 042638           15 QVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVI-EDFAKFAMLLKVKRG   65 (92)
Q Consensus        15 ~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV-~g~~K~~l~lklkrg   65 (92)
                      .+++|+.+||..||.+||+.|.|+|.+|++|+.|+| +| .+|.|.++|++-
T Consensus         3 sy~eav~~Al~~~N~~s~~~~~f~l~~v~~a~~q~v~~g-~~y~l~f~i~eT   53 (98)
T d1kwia_           3 SYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPG-TPKPVSFTVKET   53 (98)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSEEEEEEEEC---------C-CCEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCCcccEEEEEEeecceeeecCC-cEEEEEEEEEEe
Confidence            579999999999999999999999999999999999 78 788888888653

>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin B (stefin B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.6e-09  Score=69.75  Aligned_cols=81  Identities=19%  Similarity=0.290  Sum_probs=67.2

Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec---C
Q 042638            3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK---E   79 (92)
Q Consensus         3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~---~   79 (92)
                      +|||.+..|-+|++|+.+..--.+++.++|..|  ..-++++-++|||+|   .++.+|+..|+- +-.-+.|++.   +
T Consensus         3 ~GG~s~~~~at~Eiq~i~d~Vk~~~e~k~~~k~--~~f~av~yktQvVaG---~NYfIKV~vg~~-~~~HlrV~~~Lp~~   76 (98)
T d1stfi_           3 SGAPSATQPATAETQHIADQVRSQLEEKYNKKF--PVFKAVSFKSQVVAG---TNYFIKVHVGDE-DFVHLRVFQSLPHE   76 (98)
T ss_dssp             BSCCCCCEECCHHHHHHHHTTHHHHHHHHTCCC--SCCEEEEEEEEESSE---EEEEEEEECSSS-CEEEEEEEEECGGG
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCc--ceeEEEEEEEEEEcc---eeEEEEEEeCCC-cEEEEEEeccCCCC
Confidence            599999999999999999999999999999654  566899999999999   666777777775 5577888888   3


Q ss_pred             C-eeeeecccc
Q 042638           80 G-TFHLNQMQQ   89 (92)
Q Consensus        80 g-~~~l~~~~~   89 (92)
                      | ...|..++.
T Consensus        77 ~~~l~L~~~q~   87 (98)
T d1stfi_          77 NKPLTLSNYQT   87 (98)
T ss_dssp             CCCCEEEEEEE
T ss_pred             CCceEEEEEec
Confidence            3 478877664

>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin A (stefin A)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.2e-06  Score=55.86  Aligned_cols=81  Identities=19%  Similarity=0.337  Sum_probs=66.2

Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec---C
Q 042638            3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK---E   79 (92)
Q Consensus         3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~---~   79 (92)
                      +|||.+..|-+|+||+-+.---..+.+++|..|  ..-+.++=++|||+|   .++.+|+.-|+- +-.-+.|++.   +
T Consensus         3 ~GG~s~~~~at~Eiq~I~d~Vk~~le~k~g~~~--~~F~av~yktQvVAG---tNYfIKV~vG~~-~~vHlrVf~~Lp~~   76 (98)
T d1nb5i_           3 PGGLSEAKPATPEIQEIVDKVKPQLEEKTNETY--GKLEAVQYKTQVVAG---TNYYIKVRAGDN-KYMHLKVFKSLPGQ   76 (98)
T ss_dssp             TTSCCCCEECCHHHHHHHHHHHHHHHHHHCCCC--SCCEEEEEEEEESSE---EEEEEEEECSSS-CEEEEEEEEECTTS
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc--ceEEEEEEEEEEEcc---eeEEEEEEeCCC-cEEEEEEeccCCCC
Confidence            699999999999999999998889999999876  356677788999999   777889998876 4567778887   3


Q ss_pred             -Ceeeeecccc
Q 042638           80 -GTFHLNQMQQ   89 (92)
Q Consensus        80 -g~~~l~~~~~   89 (92)
                       +...|..++.
T Consensus        77 ~~~l~L~~~q~   87 (98)
T d1nb5i_          77 NEDLVLTGYQV   87 (98)
T ss_dssp             CCCCEEEEEEE
T ss_pred             CCccEEEEEEc
Confidence             3577776654

>d2bo9b1 d.17.1.5 (B:1-98) Latexin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Latexin-like
domain: Latexin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0044  Score=40.52  Aligned_cols=63  Identities=17%  Similarity=0.181  Sum_probs=54.7

Q ss_pred             cccCCCChHHHHHHHHHHHHHhhhcCCCC-cchhhhhhhhhhhhhhhh-heeeeeeEecccccee
Q 042638            7 QAVPVHDPQVQDAANHAIQTIQQRSNSLF-PYVLQEIVHAKAEVIEDF-AKFAMLLKVKRGEKEE   69 (92)
Q Consensus         7 ~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~-~ykl~eIv~AqsQVV~g~-~K~~l~lklkrg~k~e   69 (92)
                      .++||+.=.-++||.-|+.=||-++-|.+ +|-|..|.+|.++++.++ -||+|..-+..=..+|
T Consensus         1 ~ei~psh~pA~rAA~vA~hy~N~~~GSP~rl~~L~~V~~a~~e~ip~~G~Ky~L~Fs~e~~~~~e   65 (98)
T d2bo9b1           1 MEIPPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQKQ   65 (98)
T ss_dssp             CBCCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTCC
T ss_pred             CCCCCcchHHHHHHHHHHHHhhcccCCCceeeehhHHHhhhhhhccccCcEEEEEEEhhhccccc
Confidence            36889999999999999999999999988 889999999999999886 8999988876554443